BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921788.2.1
(606 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU225644.1|AU225644 AU225644 Oryza sativa Koshihikari pi... 168 2e-039
dbj|AK106296.1| Oryza sativa (japonica cultivar-group) cDNA... 168 2e-039
gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbar... 167 9e-039
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 167 9e-039
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 167 9e-039
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 167 9e-039
gb|AACV01006434.1| Oryza sativa (japonica cultivar-group) c... 145 3e-032
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 145 3e-032
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 145 3e-032
dbj|AK121901.1| Oryza sativa (japonica cultivar-group) cDNA... 115 3e-023
gb|AACV01011920.1| Oryza sativa (japonica cultivar-group) c... 115 3e-023
gb|AC121363.2| Oryza sativa (japonica cultivar-group) chrom... 115 3e-023
ref|NT_107209.1| Oryza sativa (japonica cultivar-group) 115 3e-023
gb|CH401205.1| Oryza sativa (japonica cultivar-group) chrom... 115 3e-023
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 115 3e-023
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 115 3e-023
gb|CF296734.1|CF296734 30DGS--07-D24.b1 Rice leaf plasmid c... 78 6e-012
gb|CF296735.1|CF296735 30DGS--07-D24.g1 Rice leaf plasmid c... 78 6e-012
gb|CF334345.1|CF334345 JMT--03-J18.b1 AtJMT-overexpressing ... 78 6e-012
dbj|AK108269.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
gb|AACV01017053.1| Oryza sativa (japonica cultivar-group) c... 78 6e-012
ref|NM_185537.2| Oryza sativa (japonica cultivar-group), mRNA 78 6e-012
dbj|AP004316.4| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 78 6e-012
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
gb|CF334346.1|CF334346 JMT--03-J18.g1 AtJMT-overexpressing ... 52 4e-004
dbj|AK107213.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AB110444.1| Oryza sativa (japonica cultivar-group) rf-1... 48 0.006
gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E0... 48 0.006
gb|AACV01021873.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 48 0.006
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AK071422.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.022
dbj|AP002873.2| Oryza sativa (japonica cultivar-group) geno... 46 0.022
dbj|AP003567.4| Oryza sativa (japonica cultivar-group) geno... 46 0.022
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.022
ref|NM_189305.1| Oryza sativa (japonica cultivar-group), p... 46 0.022
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 46 0.022
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.022
gb|CB646019.1|CB646019 OSJNEb08C14.r OSJNEb Oryza sativa (j... 42 0.34
dbj|AK120408.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.34
gb|AACV01009682.1| Oryza sativa (japonica cultivar-group) c... 42 0.34
ref|NM_197170.1| Oryza sativa (japonica cultivar-group) put... 42 0.34
ref|XM_472393.1| Oryza sativa (japonica cultivar-group), p... 42 0.34
ref|NT_107197.1| Oryza sativa (japonica cultivar-group) 42 0.34
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.34
emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromoso... 42 0.34
emb|AL731641.4| Oryza sativa (japonica cultivar-group) chro... 42 0.34
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 42 0.34
>gb|AU225644.1|AU225644 AU225644 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0625, mRNA sequence
Length = 482
Score = 168 bits (85), Expect = 2e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 240 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 299
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
||||||||||||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 300 ggcggcgggtggcgagctacaaggcgtactcggtggaggggaatgtcaagtcctccctcc 359
Query: 269 ccaggggattccgctggatcaaggccaagtgctccgagctcatccatggctga 321
|||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 360 gcaggggtttccgctggatcaaggccaagtgctccgagttgatccatggctga 412
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 105 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 164
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 165 tcgtcaagcc 174
>dbj|AK106296.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B11, full
insert sequence
Length = 667
Score = 168 bits (85), Expect = 2e-039
Identities = 151/173 (87%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 229 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 288
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
||||||||||||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 289 ggcggcgggtggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 348
Query: 269 ccaggggattccgctggatcaaggccaagtgctccgagctcatccatggctga 321
|||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 349 gcaggggtttccgctggatcaaggccaagtgctccgagttgatccatggctga 401
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 94 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 153
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 154 tcgtcaagcc 163
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0032G21, from chromosome 3, complete sequence
Length = 187621
Score = 167 bits (84), Expect = 9e-039
Identities = 150/172 (87%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 51517 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 51576
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
||||||||||||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 51577 ggcggcgggtggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 51636
Query: 269 ccaggggattccgctggatcaaggccaagtgctccgagctcatccatggctg 320
|||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 51637 gcaggggtttccgctggatcaaggccaagtgctccgagttgatccatggctg 51688
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 51382 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 51441
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 51442 tcgtcaagcc 51451
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 167 bits (84), Expect = 9e-039
Identities = 150/172 (87%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 1978520 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 1978579
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
||||||||||||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 1978580 ggcggcgggtggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 1978639
Query: 269 ccaggggattccgctggatcaaggccaagtgctccgagctcatccatggctg 320
|||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 1978640 gcaggggtttccgctggatcaaggccaagtgctccgagttgatccatggctg 1978691
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 1978385 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 1978444
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 1978445 tcgtcaagcc 1978454
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 167 bits (84), Expect = 9e-039
Identities = 150/172 (87%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 10632704 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 10632763
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
||||||||||||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 10632764 ggcggcgggtggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 10632823
Query: 269 ccaggggattccgctggatcaaggccaagtgctccgagctcatccatggctg 320
|||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 10632824 gcaggggtttccgctggatcaaggccaagtgctccgagttgatccatggctg 10632875
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 10632569 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 10632628
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 10632629 tcgtcaagcc 10632638
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 167 bits (84), Expect = 9e-039
Identities = 150/172 (87%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 10634603 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 10634662
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
||||||||||||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 10634663 ggcggcgggtggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 10634722
Query: 269 ccaggggattccgctggatcaaggccaagtgctccgagctcatccatggctg 320
|||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 10634723 gcaggggtttccgctggatcaaggccaagtgctccgagttgatccatggctg 10634774
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 10634468 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 10634527
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 10634528 tcgtcaagcc 10634537
>gb|AACV01006434.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006434, whole
genome shotgun sequence
Length = 38209
Score = 145 bits (73), Expect = 3e-032
Identities = 149/173 (86%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 3343 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 3284
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
|||||||| |||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 3283 ggcggcggttggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 3224
Query: 269 cca-ggggattccgctggatcaaggccaagtgctccgagctcatccatggctg 320
|| |||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 3223 gcagggggtttccgctggatcaaggccaagtgctccgagttgatccatggctg 3171
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Minus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 3478 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 3419
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 3418 tcgtcaagcc 3409
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 145 bits (73), Expect = 3e-032
Identities = 149/173 (86%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 10711276 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 10711335
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
|||||||| |||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 10711336 ggcggcggttggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 10711395
Query: 269 cca-ggggattccgctggatcaaggccaagtgctccgagctcatccatggctg 320
|| |||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 10711396 gcagggggtttccgctggatcaaggccaagtgctccgagttgatccatggctg 10711448
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 10711141 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 10711200
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 10711201 tcgtcaagcc 10711210
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 145 bits (73), Expect = 3e-032
Identities = 149/173 (86%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtggggtcggcgtggtgcttcagcgatccggagatgaaaaggc 208
||||||| || ||||| |||| || || |||||||||||||| ||||||||||| ||||
Sbjct: 10903638 ggggcgggggaggaggcatgggatccgcctggtgcttcagcgacccggagatgaagaggc 10903697
Query: 209 ggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgttcc 268
|||||||| |||| ||||||||||| ||||||| |||||| || |||||| | || |||
Sbjct: 10903698 ggcggcggttggcgagctacaaggcgtactcggtggaggggaaggtcaagtcctccctcc 10903757
Query: 269 cca-ggggattccgctggatcaaggccaagtgctccgagctcatccatggctg 320
|| |||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 10903758 gcagggggtttccgctggatcaaggccaagtgctccgagttgatccatggctg 10903810
Score = 56.0 bits (28), Expect = 2e-005
Identities = 60/70 (85%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 50 acgaccgcccctacc---gcaacgaggtcgtgccctacggtgaccgccgcatcgacatca 106
||||||||||||||| || |||||| ||||| ||||| ||||||||||||||| ||
Sbjct: 10903503 acgaccgcccctaccacggccgcgaggtggtgccgtacggggaccgccgcatcgacgtcg 10903562
Query: 107 tcgtcaagcc 116
||||||||||
Sbjct: 10903563 tcgtcaagcc 10903572
>dbj|AK121901.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105G24, full
insert sequence
Length = 1068
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 397 gtggtgcttcagcgacccggagatgaagcggcggcggcgggtggcgagctacaaggcgta 456
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| ||||||||| | ||||| ||| | | ||||| |||||||| |||||| |||
Sbjct: 457 ctcggtggagggcaagatgaaggcgtcgctgcggagggggctccgctggttcaagggcaa 516
Query: 297 gtgctccgag 306
||||||||||
Sbjct: 517 gtgctccgag 526
>gb|AACV01011920.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011920, whole
genome shotgun sequence
Length = 21356
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Minus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 20030 gtggtgcttcagcgacccggagatgaagcggcggcggcgggtggcgagctacaaggcgta 19971
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| ||||||||| | ||||| ||| | | ||||| |||||||| |||||| |||
Sbjct: 19970 ctcggtggagggcaagatgaaggcgtcgctgcggagggggctccgctggttcaagggcaa 19911
Query: 297 gtgctccgag 306
||||||||||
Sbjct: 19910 gtgctccgag 19901
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0036C12, complete sequence
Length = 145517
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Minus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 98300 gtggtgcttcagcgacccggagatgaagcggcggcggcgggtggcgagctacaaggcgta 98241
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| ||||||||| | ||||| ||| | | ||||| |||||||| |||||| |||
Sbjct: 98240 ctcggtggagggcaagatgaaggcgtcgctgcggagggggctccgctggttcaagggcaa 98181
Query: 297 gtgctccgag 306
||||||||||
Sbjct: 98180 gtgctccgag 98171
>ref|NT_107209.1| Oryza sativa (japonica cultivar-group)
Length = 505262
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Minus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 272929 gtggtgcttcagcgacccggagatgaagcggcggcggcgggtggcgagctacaaggcgta 272870
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| ||||||||| | ||||| ||| | | ||||| |||||||| |||||| |||
Sbjct: 272869 ctcggtggagggcaagatgaaggcgtcgctgcggagggggctccgctggttcaagggcaa 272810
Query: 297 gtgctccgag 306
||||||||||
Sbjct: 272809 gtgctccgag 272800
>gb|CH401205.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000042 genomic
scaffold, whole genome shotgun sequence
Length = 2493951
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Minus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 1638922 gtggtgcttcagcgacccggagatgaagcggcggcggcgggtggcgagctacaaggcgta 1638863
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| ||||||||| | ||||| ||| | | ||||| |||||||| |||||| |||
Sbjct: 1638862 ctcggtggagggcaagatgaaggcgtcgctgcggagggggctccgctggttcaagggcaa 1638803
Query: 297 gtgctccgag 306
||||||||||
Sbjct: 1638802 gtgctccgag 1638793
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Minus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 16445184 gtggtgcttcagcgacccggagatgaagcggcggcggcgggtggcgagctacaaggcgta 16445125
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| ||||||||| | ||||| ||| | | ||||| |||||||| |||||| |||
Sbjct: 16445124 ctcggtggagggcaagatgaaggcgtcgctgcggagggggctccgctggttcaagggcaa 16445065
Query: 297 gtgctccgag 306
||||||||||
Sbjct: 16445064 gtgctccgag 16445055
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Minus
Query: 177 gtggtgcttcagcgatccggagatgaaaaggcggcggcgggtggccagctacaaggctta 236
||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 16774190 gtggtgcttcagcgacccggagatgaagcggcggcggcgggtggcgagctacaaggcgta 16774131
Query: 237 ctcggcggagggcaaagtcaaggcatcgttccccaggggattccgctggatcaaggccaa 296
||||| ||||||||| | ||||| ||| | | ||||| |||||||| |||||| |||
Sbjct: 16774130 ctcggtggagggcaagatgaaggcgtcgctgcggagggggctccgctggttcaagggcaa 16774071
Query: 297 gtgctccgag 306
||||||||||
Sbjct: 16774070 gtgctccgag 16774061
>gb|CF296734.1|CF296734 30DGS--07-D24.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--07-D24, mRNA sequence
Length = 501
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 380 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 321
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 320 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 270
>gb|CF296735.1|CF296735 30DGS--07-D24.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--07-D24, mRNA sequence
Length = 546
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 166 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 225
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 226 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 276
>gb|CF334345.1|CF334345 JMT--03-J18.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--03-J18, mRNA sequence
Length = 498
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 385 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 326
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 325 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 275
>dbj|AK108269.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C01, full
insert sequence
Length = 777
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 294 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 353
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 354 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 404
>gb|AACV01017053.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017053, whole
genome shotgun sequence
Length = 20652
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 18473 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 18532
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 18533 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 18583
>ref|NM_185537.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 777
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Plus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 294 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 353
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 354 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 404
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0597G07
Length = 152928
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 86888 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 86829
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 86828 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 86778
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 16911204 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 16911145
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 16911144 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 16911094
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 14897103 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 14897044
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 14897043 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 14896993
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 28296542 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 28296483
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 28296482 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 28296432
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 77.8 bits (39), Expect = 6e-012
Identities = 93/111 (83%)
Strand = Plus / Minus
Query: 193 ccggagatgaaaaggcggcggcgggtggccagctacaaggcttactcggcggagggcaaa 252
||||||||||| |||||||| |||||||| | |||||| | ||| ||| |||||| ||
Sbjct: 29298199 ccggagatgaagcggcggcggagggtggccggatacaagtcgtacgcggtggaggggaag 29298140
Query: 253 gtcaaggcatcgttccccaggggattccgctggatcaaggccaagtgctcc 303
|| ||||| || ||| |||||| ||||||||||||||||||||||||||
Sbjct: 29298139 gtgaaggcgtccatccgcagggggctccgctggatcaaggccaagtgctcc 29298089
>gb|CF334346.1|CF334346 JMT--03-J18.g1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--03-J18, mRNA sequence
Length = 696
Score = 52.0 bits (26), Expect = 4e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 278 tccgctggatcaaggccaagtgctcc 303
||||||||||||||||||||||||||
Sbjct: 382 tccgctggatcaaggccaagtgctcc 407
>dbj|AK107213.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-C04, full
insert sequence
Length = 1375
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 90 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 149
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 150 ctgcatcaaggccaactgctccga 173
>dbj|AB110444.1| Oryza sativa (japonica cultivar-group) rf-1gene for fertility restorer,
hypothetical proteins, complete cds
Length = 45315
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 43073 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 43132
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 43133 ctgcatcaaggccaactgctccga 43156
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete
sequence
Length = 136120
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 67470 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 67411
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 67410 ctgcatcaaggccaactgctccga 67387
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 115566 ggcggcgggggaggggtgggg 115546
>gb|AACV01021873.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021873, whole
genome shotgun sequence
Length = 51320
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 30057 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 29998
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 29997 ctgcatcaaggccaactgctccga 29974
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 358879 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 358938
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 358939 ctgcatcaaggccaactgctccga 358962
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 310783 ggcggcgggggaggggtgggg 310803
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 6439032 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 6439091
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 6439092 ctgcatcaaggccaactgctccga 6439115
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 17304826 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 17304885
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 17304886 ctgcatcaaggccaactgctccga 17304909
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 18439223 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 18439282
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 18439283 ctgcatcaaggccaactgctccga 18439306
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 18391127 ggcggcgggggaggggtgggg 18391147
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 48.1 bits (24), Expect = 0.006
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 223 agctacaaggcttactcggcggagggcaaagtcaaggcatcgt-tccccaggggattccg 281
||||||||||| ||||| | ||||||||| ||||||| || ||| |||||| ||||
Sbjct: 18449276 agctacaaggcatactcagtggagggcaagatcaaggcctcccgtccgtaggggactccg 18449335
Query: 282 ctggatcaaggccaagtgctccga 305
||| ||||||||||| ||||||||
Sbjct: 18449336 ctgcatcaaggccaactgctccga 18449359
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 18401180 ggcggcgggggaggggtgggg 18401200
>dbj|AK071422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094M01, full
insert sequence
Length = 829
Score = 46.1 bits (23), Expect = 0.022
Identities = 80/99 (80%)
Strand = Plus / Plus
Query: 206 ggcggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgt 265
|||||||||||||||| ||||||||| ||| | | ||||||||| || ||||| |||
Sbjct: 331 ggcggcggcgggtggcggtctacaaggcgtacgccgtggagggcaaggtgaaggcctcgc 390
Query: 266 tccccaggggattccgctggatcaaggccaagtgctccg 304
||| | | || |||||||| ||||| |||||||||||
Sbjct: 391 tccgccgcggcatccgctggttcaagcgcaagtgctccg 429
>dbj|AP002873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0552C05
Length = 136586
Score = 46.1 bits (23), Expect = 0.022
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 206 ggcggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgt 265
|||||||||||||||| ||||||||| ||| | | ||||||||| || ||||| |||
Sbjct: 78792 ggcggcggcgggtggcggtctacaaggcgtacgccgtggagggcaaggtgaaggcctcgc 78733
Query: 266 tccccaggggattccgctggatcaaggccaagtgctccg 304
||| | | || |||||||| ||||| |||||||||||
Sbjct: 78732 tccgccgcggcatccgctggttcaagcgcaagtgctccg 78694
>dbj|AP003567.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBb0022N24
Length = 124062
Score = 46.1 bits (23), Expect = 0.022
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 206 ggcggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgt 265
|||||||||||||||| ||||||||| ||| | | ||||||||| || ||||| |||
Sbjct: 2405 ggcggcggcgggtggcggtctacaaggcgtacgccgtggagggcaaggtgaaggcctcgc 2346
Query: 266 tccccaggggattccgctggatcaaggccaagtgctccg 304
||| | | || |||||||| ||||| |||||||||||
Sbjct: 2345 tccgccgcggcatccgctggttcaagcgcaagtgctccg 2307
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.022
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 206 ggcggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgt 265
|||||||||||||||| ||||||||| ||| | | ||||||||| || ||||| |||
Sbjct: 11362989 ggcggcggcgggtggcggtctacaaggcgtacgccgtggagggcaaggtgaaggcctcgc 11362930
Query: 266 tccccaggggattccgctggatcaaggccaagtgctccg 304
||| | | || |||||||| ||||| |||||||||||
Sbjct: 11362929 tccgccgcggcatccgctggttcaagcgcaagtgctccg 11362891
>ref|NM_189305.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 726
Score = 46.1 bits (23), Expect = 0.022
Identities = 80/99 (80%)
Strand = Plus / Plus
Query: 206 ggcggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgt 265
|||||||||||||||| ||||||||| ||| | | ||||||||| || ||||| |||
Sbjct: 611 ggcggcggcgggtggcggtctacaaggcgtacgccgtggagggcaaggtgaaggcctcgc 670
Query: 266 tccccaggggattccgctggatcaaggccaagtgctccg 304
||| | | || |||||||| ||||| |||||||||||
Sbjct: 671 tccgccgcggcatccgctggttcaagcgcaagtgctccg 709
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 46.1 bits (23), Expect = 0.022
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 206 ggcggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgt 265
|||||||||||||||| ||||||||| ||| | | ||||||||| || ||||| |||
Sbjct: 1312676 ggcggcggcgggtggcggtctacaaggcgtacgccgtggagggcaaggtgaaggcctcgc 1312617
Query: 266 tccccaggggattccgctggatcaaggccaagtgctccg 304
||| | | || |||||||| ||||| |||||||||||
Sbjct: 1312616 tccgccgcggcatccgctggttcaagcgcaagtgctccg 1312578
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 46.1 bits (23), Expect = 0.022
Identities = 80/99 (80%)
Strand = Plus / Minus
Query: 206 ggcggcggcgggtggccagctacaaggcttactcggcggagggcaaagtcaaggcatcgt 265
|||||||||||||||| ||||||||| ||| | | ||||||||| || ||||| |||
Sbjct: 11365207 ggcggcggcgggtggcggtctacaaggcgtacgccgtggagggcaaggtgaaggcctcgc 11365148
Query: 266 tccccaggggattccgctggatcaaggccaagtgctccg 304
||| | | || |||||||| ||||| |||||||||||
Sbjct: 11365147 tccgccgcggcatccgctggttcaagcgcaagtgctccg 11365109
>gb|CB646019.1|CB646019 OSJNEb08C14.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb08C14 3', mRNA sequence
Length = 439
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 149 ggggcggcgggggaggggtgg 169
|||||||||||||||||||||
Sbjct: 416 ggggcggcgggggaggggtgg 436
>dbj|AK120408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M08, full
insert sequence
Length = 3407
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 589 ggcggcgggggaggggtgggg 609
>gb|AACV01009682.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009682, whole
genome shotgun sequence
Length = 22651
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 11642 ggcggcgggggaggggtgggg 11662
>ref|NM_197170.1| Oryza sativa (japonica cultivar-group) putative dentin phosphoryn
protein (OSJNBa0017E08.7), mRNA
Length = 3024
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 236 ggcggcgggggaggggtgggg 256
>ref|XM_472393.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1584
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 468 ggcggcgggggaggggtgggg 488
>ref|NT_107197.1| Oryza sativa (japonica cultivar-group)
Length = 297308
Score = 42.1 bits (21), Expect = 0.34
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 ggcggcgggggaggggtgggg 171
|||||||||||||||||||||
Sbjct: 294876 ggcggcgggggaggggtgggg 294896
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,416,667
Number of Sequences: 438736
Number of extensions: 1416667
Number of successful extensions: 30542
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29298
Number of HSP's gapped (non-prelim): 1234
length of query: 606
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 585
effective length of database: 2,791,206,460
effective search space: 1632855779100
effective search space used: 1632855779100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)