BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 58 8e-006
gb|AACV01022906.1| Oryza sativa (japonica cultivar-group) c... 58 8e-006
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 58 8e-006
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 58 8e-006
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 58 8e-006
gb|AC112208.3| Oryza sativa (japonica cultivar-group) chrom... 58 8e-006
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 58 8e-006
dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA... 54 1e-004
gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0... 50 0.002
ref|NT_107144.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AACV01022671.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01022918.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|CH401260.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AC138195.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AC135258.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AC147811.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP003916.2| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|AACV01016104.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.008
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|AACV01016102.1| Oryza sativa (japonica cultivar-group) c... 44 0.12
ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.12
gb|CV722871.1|CV722871 root--01-N05.g1 Rice root lambda pha... 42 0.48
gb|AACV01022921.1| Oryza sativa (japonica cultivar-group) c... 42 0.48
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 58.0 bits (29), Expect = 8e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 cctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggatgagg 446
||||||||||| | |||||||| | |||||||||||||| |||||||| || |||
Sbjct: 543427 cctcgagctcccagtttcttcacaatattgtagtcactgaagcctgctttgctgaagaga 543486
Query: 447 tcacgccagtcattcacgtcccgctgccggcct 479
|||||||| |||||| |||| ||||| ||||||
Sbjct: 543487 tcacgccaatcattctcgtctcgctgtcggcct 543519
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 519118 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 519177
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 519178 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 519228
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 683647 gaacaagtcacctgcaacatagttaacgacaccatca 683683
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 680352 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 680411
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 680412 caatcatcatcgctccagtggtgca 680436
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 738835 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 738894
Query: 430 ctgct 434
|||||
Sbjct: 738895 ctgct 738899
Score = 42.1 bits (21), Expect = 0.48
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 543658 aggatcttcacacaatcctcgtcattccagtggtgaagcac 543698
>gb|AACV01022906.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022906, whole
genome shotgun sequence
Length = 51114
Score = 58.0 bits (29), Expect = 8e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 cctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggatgagg 446
||||||||||| | |||||||| | |||||||||||||| |||||||| || |||
Sbjct: 14716 cctcgagctcccagtttcttcacaatattgtagtcactgaagcctgctttgctgaagaga 14775
Query: 447 tcacgccagtcattcacgtcccgctgccggcct 479
|||||||| |||||| |||| ||||| ||||||
Sbjct: 14776 tcacgccaatcattctcgtctcgctgtcggcct 14808
Score = 42.1 bits (21), Expect = 0.48
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 14947 aggatcttcacacaatcctcgtcattccagtggtgaagcac 14987
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 58.0 bits (29), Expect = 8e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 cctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggatgagg 446
||||||||||| | |||||||| | |||||||||||||| |||||||| || |||
Sbjct: 2507971 cctcgagctcccagtttcttcacaatattgtagtcactgaagcctgctttgctgaagaga 2508030
Query: 447 tcacgccagtcattcacgtcccgctgccggcct 479
|||||||| |||||| |||| ||||| ||||||
Sbjct: 2508031 tcacgccaatcattctcgtctcgctgtcggcct 2508063
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 2486896 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 2486955
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 2486956 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 2487006
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 2644629 gaacaagtcacctgcaacatagttaacgacaccatca 2644665
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 2641334 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 2641393
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 2641394 caatcatcatcgctccagtggtgca 2641418
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 2703183 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 2703242
Query: 430 ctgct 434
|||||
Sbjct: 2703243 ctgct 2703247
Score = 42.1 bits (21), Expect = 0.48
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 2508202 aggatcttcacacaatcctcgtcattccagtggtgaagcac 2508242
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 58.0 bits (29), Expect = 8e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 cctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggatgagg 446
||||||||||| | |||||||| | |||||||||||||| |||||||| || |||
Sbjct: 10363015 cctcgagctcccagtttcttcacaatattgtagtcactgaagcctgctttgctgaagaga 10363074
Query: 447 tcacgccagtcattcacgtcccgctgccggcct 479
|||||||| |||||| |||| ||||| ||||||
Sbjct: 10363075 tcacgccaatcattctcgtctcgctgtcggcct 10363107
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 10341940 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 10341999
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 10342000 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 10342050
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 10499673 gaacaagtcacctgcaacatagttaacgacaccatca 10499709
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 10496378 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 10496437
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 10496438 caatcatcatcgctccagtggtgca 10496462
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 6712434 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 6712493
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 6712494 cagtcgtcatcgctcca 6712510
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 6712945 aacatgtcacctgcaacatagttaaccacgccatca 6712980
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 10558227 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 10558286
Query: 430 ctgct 434
|||||
Sbjct: 10558287 ctgct 10558291
Score = 42.1 bits (21), Expect = 0.48
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 10363246 aggatcttcacacaatcctcgtcattccagtggtgaagcac 10363286
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 58.0 bits (29), Expect = 8e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 cctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggatgagg 446
||||||||||| | |||||||| | |||||||||||||| |||||||| || |||
Sbjct: 11353907 cctcgagctcccagtttcttcacaatattgtagtcactgaagcctgctttgctgaagaga 11353966
Query: 447 tcacgccagtcattcacgtcccgctgccggcct 479
|||||||| |||||| |||| ||||| ||||||
Sbjct: 11353967 tcacgccaatcattctcgtctcgctgtcggcct 11353999
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 11329598 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 11329657
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 11329658 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 11329708
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 11494127 gaacaagtcacctgcaacatagttaacgacaccatca 11494163
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 11490832 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 11490891
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 11490892 caatcatcatcgctccagtggtgca 11490916
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 7137733 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 7137792
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 7137793 cagtcgtcatcgctcca 7137809
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 7138244 aacatgtcacctgcaacatagttaaccacgccatca 7138279
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 11549315 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11549374
Query: 430 ctgct 434
|||||
Sbjct: 11549375 ctgct 11549379
Score = 42.1 bits (21), Expect = 0.48
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 11354138 aggatcttcacacaatcctcgtcattccagtggtgaagcac 11354178
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
map C53961S, complete sequence
Length = 175121
Score = 58.0 bits (29), Expect = 8e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 cctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggatgagg 446
||||||||||| | |||||||| | |||||||||||||| |||||||| || |||
Sbjct: 140265 cctcgagctcccagtttcttcacaatattgtagtcactgaagcctgctttgctgaagaga 140324
Query: 447 tcacgccagtcattcacgtcccgctgccggcct 479
|||||||| |||||| |||| ||||| ||||||
Sbjct: 140325 tcacgccaatcattctcgtctcgctgtcggcct 140357
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 115956 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 116015
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 116016 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 116066
Score = 42.1 bits (21), Expect = 0.48
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 140496 aggatcttcacacaatcctcgtcattccagtggtgaagcac 140536
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 58.0 bits (29), Expect = 8e-006
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 387 cctcgagctccaaatttcttcagcagcttgtagtcactgaaacctgctttctggatgagg 446
||||||||||| | |||||||| | |||||||||||||| |||||||| || |||
Sbjct: 11433096 cctcgagctcccagtttcttcacaatattgtagtcactgaagcctgctttgctgaagaga 11433155
Query: 447 tcacgccagtcattcacgtcccgctgccggcct 479
|||||||| |||||| |||| ||||| ||||||
Sbjct: 11433156 tcacgccaatcattctcgtctcgctgtcggcct 11433188
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 11408787 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 11408846
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 11408847 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 11408897
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 11573316 gaacaagtcacctgcaacatagttaacgacaccatca 11573352
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 11570021 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 11570080
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 11570081 caatcatcatcgctccagtggtgca 11570105
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 7203704 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 7203763
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 7203764 cagtcgtcatcgctcca 7203780
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 7204215 aacatgtcacctgcaacatagttaaccacgccatca 7204250
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 11628504 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 11628563
Query: 430 ctgct 434
|||||
Sbjct: 11628564 ctgct 11628568
Score = 42.1 bits (21), Expect = 0.48
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 621 aggatcttcacgcagtcctcatcactccagtggtgcagcac 661
||||||||||| || ||||| ||| |||||||||| |||||
Sbjct: 11433327 aggatcttcacacaatcctcgtcattccagtggtgaagcac 11433367
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
insert sequence
Length = 1262
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Minus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 1167 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 1108
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 1107 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 1057
>gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022905, whole
genome shotgun sequence
Length = 10752
Score = 54.0 bits (27), Expect = 1e-004
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 369 ggatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaa 428
||||||| ||| | |||| ||||||||| ||||| |||| | ||| |||| | ||||
Sbjct: 4443 ggatagacctcaaagacagctcgagctctcaattttttcacaatcttatagttattgaag 4502
Query: 429 cctgctttctggatgaggtcacgccagtcattcacgtcccgctgccggcct 479
|||||||||| || ||| |||||||||||||| |||| ||||| ||||||
Sbjct: 4503 cctgctttcttgaagagatcacgccagtcattttcgtctcgctgtcggcct 4553
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
insert sequence
Length = 1264
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 954 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 895
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 894 caatcatcatcgctccagtggtgca 870
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 826 gaacaagtcacctgcaacatagttaacgacaccatca 790
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
insert sequence
Length = 1362
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 949 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 890
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 889 caatcatcatcgctccagtggtgca 865
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 821 gaacaagtcacctgcaacatagttaacgacaccatca 785
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
Length = 128418
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 8705 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 8646
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 8645 caatcatcatcgctccagtggtgca 8621
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 5410 gaacaagtcacctgcaacatagttaacgacaccatca 5374
>ref|NT_107144.1| Oryza sativa (japonica cultivar-group)
Length = 965832
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 921011 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 921070
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 921071 cagtcgtcatcgctcca 921087
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 921522 aacatgtcacctgcaacatagttaaccacgccatca 921557
>gb|AACV01022671.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022671,
whole genome shotgun sequence
Length = 32089
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 757 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 698
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 697 cagtcgtcatcgctcca 681
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 246 aacatgtcacctgcaacatagttaaccacgccatca 211
>gb|AACV01022918.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022918, whole
genome shotgun sequence
Length = 11538
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 6231 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 6172
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 6171 caatcatcatcgctccagtggtgca 6147
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 2936 gaacaagtcacctgcaacatagttaacgacaccatca 2900
>gb|CH401260.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000097
genomic scaffold, whole genome shotgun sequence
Length = 385661
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 327880 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 327939
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 327940 cagtcgtcatcgctcca 327956
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 328391 aacatgtcacctgcaacatagttaaccacgccatca 328426
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21,
complete sequence
Length = 147381
Score = 50.1 bits (25), Expect = 0.002
Identities = 70/85 (82%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| || ||||| || || ||||| ||||| | | | ||||||||||
Sbjct: 122956 accttccctccctcctctcgtgatggaatggcctttctgcactgagtcaagatcttcacg 122897
Query: 633 cagtcctcatcactccagtggtgca 657
|| || ||||| |||||||||||||
Sbjct: 122896 caatcatcatcgctccagtggtgca 122872
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 701 gaacatgtcacctccaacatagttaacaacaccatca 737
||||| ||||||| ||||||||||||| |||||||||
Sbjct: 119661 gaacaagtcacctgcaacatagttaacgacaccatca 119625
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 64473 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 64414
Query: 430 ctgct 434
|||||
Sbjct: 64413 ctgct 64409
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0097K08 map C827S, complete sequence
Length = 137870
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 44822 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 44763
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 44762 cagtcgtcatcgctcca 44746
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 44311 aacatgtcacctgcaacatagttaaccacgccatca 44276
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0026P08 map near C827S, complete sequence
Length = 148676
Score = 50.1 bits (25), Expect = 0.002
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 573 accttccctccctcttcccgtgaaggtattgccttcctgcagttggcaaggatcttcacg 632
|||||||||||||| | |||||||| || || ||| |||| | || ||||||||||||
Sbjct: 50953 accttccctccctcctttcgtgaagggatggctttcttgcactgggacaggatcttcacg 51012
Query: 633 cagtcctcatcactcca 649
||||| ||||| |||||
Sbjct: 51013 cagtcgtcatcgctcca 51029
Score = 48.1 bits (24), Expect = 0.008
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 702 aacatgtcacctccaacatagttaacaacaccatca 737
|||||||||||| ||||||||||||| || ||||||
Sbjct: 51464 aacatgtcacctgcaacatagttaaccacgccatca 51499
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1634_H04
Length = 151699
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactccagt 651
||||| ||||||||||||||||||||||
Sbjct: 114158 atctttacgcagtcctcatcactccagt 114185
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactcca 649
||||||| ||||||||||||||||||
Sbjct: 82250 atcttcatgcagtcctcatcactcca 82275
>gb|AACV01016104.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016104, whole
genome shotgun sequence
Length = 12834
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactccagt 651
||||| ||||||||||||||||||||||
Sbjct: 1297 atctttacgcagtcctcatcactccagt 1324
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactccagt 651
||||| ||||||||||||||||||||||
Sbjct: 3916795 atctttacgcagtcctcatcactccagt 3916822
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactcca 649
||||||| ||||||||||||||||||
Sbjct: 3884887 atcttcatgcagtcctcatcactcca 3884912
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactccagt 651
||||| ||||||||||||||||||||||
Sbjct: 2009170 atctttacgcagtcctcatcactccagt 2009197
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactcca 649
||||||| ||||||||||||||||||
Sbjct: 1990062 atcttcatgcagtcctcatcactcca 1990087
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactccagt 651
||||| ||||||||||||||||||||||
Sbjct: 15408609 atctttacgcagtcctcatcactccagt 15408636
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactcca 649
||||||| ||||||||||||||||||
Sbjct: 15389501 atcttcatgcagtcctcatcactcca 15389526
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactccagt 651
||||| ||||||||||||||||||||||
Sbjct: 16293720 atctttacgcagtcctcatcactccagt 16293747
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactcca 649
||||||| ||||||||||||||||||
Sbjct: 16261812 atcttcatgcagtcctcatcactcca 16261837
>gb|AACV01016102.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016102, whole
genome shotgun sequence
Length = 34323
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 624 atcttcacgcagtcctcatcactcca 649
||||||| ||||||||||||||||||
Sbjct: 23286 atcttcatgcagtcctcatcactcca 23311
>ref|XM_477999.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1083
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 624 atcttcacgcagtcctcatcactcca 649
||||||| ||||||||||||||||||
Sbjct: 824 atcttcatgcagtcctcatcactcca 799
>gb|CV722871.1|CV722871 root--01-N05.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--01-N05, mRNA sequence
Length = 483
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 305 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 364
Query: 430 ctgct 434
|||||
Sbjct: 365 ctgct 369
>gb|AACV01022921.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022921, whole
genome shotgun sequence
Length = 6663
Score = 42.1 bits (21), Expect = 0.48
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 370 gatagatctccaggacacctcgagctccaaatttcttcagcagcttgtagtcactgaaac 429
|||||| ||| | |||| ||||||| |||| |||||||| | ||| ||||||||||| |
Sbjct: 5724 gatagacctcgaagacagctcgagcaccaagtttcttcacaatcttatagtcactgaatc 5783
Query: 430 ctgct 434
|||||
Sbjct: 5784 ctgct 5788
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,163,483
Number of Sequences: 438736
Number of extensions: 1163483
Number of successful extensions: 5971
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5654
Number of HSP's gapped (non-prelim): 307
length of query: 847
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 826
effective length of database: 2,791,206,460
effective search space: 2305536535960
effective search space used: 2305536535960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)