BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2823202.2.1
(529 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB665368.1|CB665368 OSJNEd11L13.r OSJNEd Oryza sativa (j... 153 1e-034
gb|CB666819.1|CB666819 OSJNEd13N23.r OSJNEd Oryza sativa (j... 153 1e-034
gb|CB668149.1|CB668149 OSJNEd15N19.r OSJNEd Oryza sativa (j... 153 1e-034
dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA... 153 1e-034
ref|XM_474151.1| Oryza sativa (japonica cultivar-group), p... 153 1e-034
gb|CB665367.1|CB665367 OSJNEd11L13.f OSJNEd Oryza sativa (j... 151 4e-034
dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA... 145 3e-032
gb|CB668148.1|CB668148 OSJNEd15N19.f OSJNEd Oryza sativa (j... 139 2e-030
gb|CB666818.1|CB666818 OSJNEd13N23.f OSJNEd Oryza sativa (j... 80 1e-012
gb|AQ864274.1|AQ864274 nbeb0022J06r CUGI Rice BAC Library (... 64 8e-008
gb|AZ130201.1|AZ130201 OSJNBb0102O07r CUGI Rice BAC Library... 64 8e-008
gb|AACV01010593.1| Oryza sativa (japonica cultivar-group) c... 64 8e-008
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 64 8e-008
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 64 8e-008
emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromoso... 64 8e-008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 64 8e-008
gb|AZ130066.1|AZ130066 OSJNBb0102I19f CUGI Rice BAC Library... 50 0.001
gb|CF308557.1|CF308557 ABF--02-G21.b1 ABF3-overexpressing t... 50 0.001
>gb|CB665368.1|CB665368 OSJNEd11L13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L13 3', mRNA sequence
Length = 806
Score = 153 bits (77), Expect = 1e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 459 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 400
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| |||||||||||||| || ||||| ||||||||
Sbjct: 399 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtgttgagcaagaatccacctta 340
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||
Sbjct: 339 gaagatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggc 280
Query: 225 gtcaggctggccgcgatcctcaacaggat 253
|| ||||| || || || |||||| ||||
Sbjct: 279 gtgaggcttgctgcaatactcaaccggat 251
>gb|CB666819.1|CB666819 OSJNEd13N23.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13N23 3', mRNA sequence
Length = 808
Score = 153 bits (77), Expect = 1e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 493 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 434
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| |||||||||||||| || ||||| ||||||||
Sbjct: 433 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtgttgagcaagaatccacctta 374
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||
Sbjct: 373 gaagatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggc 314
Query: 225 gtcaggctggccgcgatcctcaacaggat 253
|| ||||| || || || |||||| ||||
Sbjct: 313 gtgaggcttgctgcaatactcaaccggat 285
>gb|CB668149.1|CB668149 OSJNEd15N19.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15N19 3', mRNA sequence
Length = 818
Score = 153 bits (77), Expect = 1e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 495 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 436
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| |||||||||||||| || ||||| ||||||||
Sbjct: 435 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtgttgagcaagaatccacctta 376
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||
Sbjct: 375 gaagatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggc 316
Query: 225 gtcaggctggccgcgatcctcaacaggat 253
|| ||||| || || || |||||| ||||
Sbjct: 315 gtgaggcttgctgcaatactcaaccggat 287
>dbj|AK059436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F11, full
insert sequence
Length = 484
Score = 153 bits (77), Expect = 1e-034
Identities = 176/209 (84%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 35 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 94
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| |||||||||||||| || ||||| ||||||||
Sbjct: 95 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtgttgagcaagaatccacctta 154
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||
Sbjct: 155 gaagatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggc 214
Query: 225 gtcaggctggccgcgatcctcaacaggat 253
|| ||||| || || || |||||| ||||
Sbjct: 215 gtgaggcttgctgcaatactcaaccggat 243
>ref|XM_474151.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 873
Score = 153 bits (77), Expect = 1e-034
Identities = 176/209 (84%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 634 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 693
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| |||||||||||||| || ||||| ||||||||
Sbjct: 694 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtgttgagcaagaatccacctta 753
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||
Sbjct: 754 gaagatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggc 813
Query: 225 gtcaggctggccgcgatcctcaacaggat 253
|| ||||| || || || |||||| ||||
Sbjct: 814 gtgaggcttgctgcaatactcaaccggat 842
>gb|CB665367.1|CB665367 OSJNEd11L13.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11L13 5', mRNA sequence
Length = 835
Score = 151 bits (76), Expect = 4e-034
Identities = 160/188 (85%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 638 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 697
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| |||||||||||||| || ||||| ||||||||
Sbjct: 698 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtgttgagcaagaatccacctta 757
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||
Sbjct: 758 gaagatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggc 817
Query: 225 gtcaggct 232
|| |||||
Sbjct: 818 gtgaggct 825
>dbj|AK106059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F11, full
insert sequence
Length = 1146
Score = 145 bits (73), Expect = 3e-032
Identities = 175/209 (83%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 660 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 719
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| ||||| |||||||| || ||||| ||||||||
Sbjct: 720 gaggagagtgcaaagctcgcgtgcaaagcgtatgagggtgttgagcaagaatccacctta 779
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggc 224
||||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||
Sbjct: 780 gaagatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggc 839
Query: 225 gtcaggctggccgcgatcctcaacaggat 253
|| ||||| || || || |||||| ||||
Sbjct: 840 gtgaggcttgctgcaatactcaaccggat 868
>gb|CB668148.1|CB668148 OSJNEd15N19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15N19 5', mRNA sequence
Length = 804
Score = 139 bits (70), Expect = 2e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 639 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 698
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtgtcgaccaagactccaccttg 164
| ||||| || ||||| || |||| |||||||||||||| || ||||| ||||||||
Sbjct: 699 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtgttgagcaagaatccacctta 758
Query: 165 gaagatgactacttcttcgccgcgctgccggtggttcagaagagga 210
||||||||||| |||||||| || ||||| || |||||||||||||
Sbjct: 759 gaagatgactatttcttcgctgccctgcctgttgttcagaagagga 804
>gb|CB666818.1|CB666818 OSJNEd13N23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13N23 5', mRNA sequence
Length = 816
Score = 79.8 bits (40), Expect = 1e-012
Identities = 85/100 (85%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagtacgct 104
||||||||| |||||||| | |||||||||||||||||||| ||||| || ||||||||
Sbjct: 717 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagtacgcc 776
Query: 105 gcagagagcgcgaagctggcctgcacggcgtacgagggtg 144
| ||||| || ||||| || |||| |||||||||||||
Sbjct: 777 gaggagagtgcaaagctcgcgtgcaaagcgtacgagggtg 816
>gb|AQ864274.1|AQ864274 nbeb0022J06r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0022J06r, DNA sequence
Length = 732
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 230 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 285
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct: 553 agatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggcgt 612
Query: 227 caggctggccgcgatcctcaacaggat 253
||||| || || || |||||| ||||
Sbjct: 613 gaggcttgctgcaatactcaaccggat 639
>gb|AZ130201.1|AZ130201 OSJNBb0102O07r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0102O07r, DNA
sequence
Length = 1136
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 163 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 218
Score = 42.1 bits (21), Expect = 0.30
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 189 ctgccggtggttcagaagaggatcgcgcaagggggcgtcaggctggccgcgatcctcaac 248
||||| || |||||||||||||| || ||||| ||||| ||||| || || || ||||||
Sbjct: 507 ctgcctgttgttcagaagaggattgctcaaggtggcgtgaggcttgctgcaatactcaac 566
Query: 249 aggat 253
||||
Sbjct: 567 cggat 571
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaag 168
|||||||||||||| || ||||| |||||||| ||||
Sbjct: 340 gcgtacgagggtgttgagcaagaatccaccttagaag 376
>gb|AACV01010593.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010593, whole
genome shotgun sequence
Length = 24024
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 13660 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 13715
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct: 13982 agatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggcgt 14041
Query: 227 caggctggccgcgatcctcaacaggat 253
||||| || || || |||||| ||||
Sbjct: 14042 gaggcttgctgcaatactcaaccggat 14068
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaag 168
|||||||||||||| || ||||| |||||||| ||||
Sbjct: 13837 gcgtacgagggtgttgagcaagaatccaccttagaag 13873
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 684812 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 684867
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct: 685134 agatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggcgt 685193
Query: 227 caggctggccgcgatcctcaacaggat 253
||||| || || || |||||| ||||
Sbjct: 685194 gaggcttgctgcaatactcaaccggat 685220
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaag 168
|||||||||||||| || ||||| |||||||| ||||
Sbjct: 684989 gcgtacgagggtgttgagcaagaatccaccttagaag 685025
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 10894053 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 10894108
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct: 10894375 agatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggcgt 10894434
Query: 227 caggctggccgcgatcctcaacaggat 253
||||| || || || |||||| ||||
Sbjct: 10894435 gaggcttgctgcaatactcaaccggat 10894461
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaag 168
|||||||||||||| || ||||| |||||||| ||||
Sbjct: 10894230 gcgtacgagggtgttgagcaagaatccaccttagaag 10894266
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 30038152 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 30038207
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct: 30038474 agatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggcgt 30038533
Query: 227 caggctggccgcgatcctcaacaggat 253
||||| || || || |||||| ||||
Sbjct: 30038534 gaggcttgctgcaatactcaaccggat 30038560
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaag 168
|||||||||||||| || ||||| |||||||| ||||
Sbjct: 30038329 gcgtacgagggtgttgagcaagaatccaccttagaag 30038365
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
complete sequence
Length = 151506
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 62045 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 62100
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct: 62367 agatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggcgt 62426
Query: 227 caggctggccgcgatcctcaacaggat 253
||||| || || || |||||| ||||
Sbjct: 62427 gaggcttgctgcaatactcaaccggat 62453
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaag 168
|||||||||||||| || ||||| |||||||| ||||
Sbjct: 62222 gcgtacgagggtgttgagcaagaatccaccttagaag 62258
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 63.9 bits (32), Expect = 8e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagacctgtgctgacaagta 100
||||||||| |||||||| | |||||||||||||||||||| ||||| || |||||
Sbjct: 33289784 gaggagaagcagtgggagacttgccgtagccggacaaagacttgtgccgataagta 33289839
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 167 agatgactacttcttcgccgcgctgccggtggttcagaagaggatcgcgcaagggggcgt 226
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct: 33290106 agatgactatttcttcgctgccctgcctgttgttcagaagaggattgctcaaggtggcgt 33290165
Query: 227 caggctggccgcgatcctcaacaggat 253
||||| || || || |||||| ||||
Sbjct: 33290166 gaggcttgctgcaatactcaaccggat 33290192
Score = 42.1 bits (21), Expect = 0.30
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 132 gcgtacgagggtgtcgaccaagactccaccttggaag 168
|||||||||||||| || ||||| |||||||| ||||
Sbjct: 33289961 gcgtacgagggtgttgagcaagaatccaccttagaag 33289997
>gb|AZ130066.1|AZ130066 OSJNBb0102I19f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0102I19f, DNA
sequence
Length = 668
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 45 gaggagaagaagtgggaggcctgccgtagccggacaaagac 85
||||||||| |||||||| | |||||||||||||||||||
Sbjct: 180 gaggagaagcagtgggagactcgccgtagccggacaaagac 220
>gb|CF308557.1|CF308557 ABF--02-G21.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-G21, mRNA sequence
Length = 459
Score = 50.1 bits (25), Expect = 0.001
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 140 gggtgtcgaccaagactccaccttggaagatgactacttcttcgccgcgctgccggtggt 199
|||||| || ||||| ||| |||| ||||||||||| || ||||| || ||||| || ||
Sbjct: 459 gggtgttgagcaagaatcccccttagaagatgactattttttcgctgccctgcctgttgt 400
Query: 200 tcagaagaggatcgcgcaagggggcgtcaggct 232
||| || ||||| || ||||| ||||| |||||
Sbjct: 399 tcaaaaaaggattgctcaaggtggcgtgaggct 367
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 743,253
Number of Sequences: 438736
Number of extensions: 743253
Number of successful extensions: 15351
Number of sequences better than 0.5: 19
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15219
Number of HSP's gapped (non-prelim): 132
length of query: 529
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 508
effective length of database: 2,791,206,460
effective search space: 1417932881680
effective search space used: 1417932881680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)