BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2751069.2.1
(940 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102378.1| Oryza sativa (japonica cultivar-group) cDNA... 866 0.0
gb|AY425991.1| Oryza sativa (japonica cultivar-group) homeo... 866 0.0
ref|XM_468564.1| Oryza sativa (japonica cultivar-group), p... 864 0.0
emb|AJ556802.1|OSA556802 Oryza sativa (japonica cultivar-gr... 718 0.0
dbj|AK059498.1| Oryza sativa (japonica cultivar-group) cDNA... 555 e-155
ref|NM_197030.1| Oryza sativa (japonica cultivar-group) put... 521 e-145
dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA... 513 e-143
dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA... 293 9e-077
gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeo... 293 9e-077
dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA... 242 3e-061
gb|AC105733.2| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
gb|AACV01005752.1| Oryza sativa (japonica cultivar-group) c... 208 4e-051
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 208 4e-051
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 208 4e-051
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 208 4e-051
gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11... 127 1e-026
gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) c... 127 1e-026
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 127 1e-026
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|AQ446450.2|AQ446450 nbxb0069H22r CUGI Rice BAC Library O... 56 4e-005
dbj|AK102183.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC O... 56 4e-005
emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Parti... 56 4e-005
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|AACV01025516.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
>dbj|AK102378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091P14, full
insert sequence
Length = 3252
Score = 866 bits (437), Expect = 0.0
Identities = 749/853 (87%), Gaps = 3/853 (0%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||| |
Sbjct: 2202 ctgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttcatctg 2143
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct: 2142 ggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagacttctcgt 2086
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||| ||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct: 2085 ctattccagtgcagagctgaagcaggtggatatcccttgaaagaagagcttcatcatgag 2026
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 2025 taagaggttgaccctcaaggcgaacaacttcaagaatctcctcattctcaactgtgtgag 1966
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
||||||| ||||| || || | ||||||||||||||||||||||||||||| |||||| |
Sbjct: 1965 caagtggaatgatgatttggctcccagaaaatctcatgggtcgcaacccagtaagtgaac 1906
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| ||||| || |||| | |||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 1905 atgcacttgttttcagagttgaagccaaatatgcatcaatattgtaatcggcccattcag 1846
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
|||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |
Sbjct: 1845 atctatgctccctcagaaatcgaaccagtactgctggaggaacactctgcagtaacattg 1786
Query: 477 atgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtat 536
||||||| ||||| ||||| ||||| ||||||||||| | || ||||||||||| ||
Sbjct: 1785 atgccttagcacatataatacctccgggggctccaaaggcgatgccagcattgctgttac 1726
Query: 537 tcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgccatctcccccca 596
||||||||||||| |||||||||||||||| ||| || ||||||| || ||||| ||||
Sbjct: 1725 tcctaattttcttagttgagttgcaagcaataactacatcttcaacaccgtctccgccca 1666
Query: 597 ttacagaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtc 656
||| |||||| ||||||||||||||||||||||||||||| ||||| || ||||| || |
Sbjct: 1665 ttatagaccacccatcatcattgaaaccactaatggcatcgttaaagcctctgctcagcc 1606
Query: 657 tttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccac 716
|||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| ||||
Sbjct: 1605 tttgactaaaagtccgtagcactgctggttgcctccccaaggcatacaccacttccccac 1546
Query: 717 ttgtttcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaa 776
|||||||||||||||||||||| | ||| || |||||| ||||||||||||||||||| |
Sbjct: 1545 ttgtttcttgagcaatttgtctgatgtgccggagtgccgcagtagtcattttctgagcga 1486
Query: 777 ctactctagaagactcatatagtggtcgaagcacttcaggaacactccatgcctcgagat 836
|||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 1485 ctacccttgaagattcatagagtggccgaagcacctcaggaacactccatgcctcaagat 1426
Query: 837 ctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgcactaaatacc 896
| |||||||||||||| |||||||| || || |||||| |||||||| || | || |
Sbjct: 1425 ccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaaccaggtatc 1366
Query: 897 cacttggaagcat 909
|||||||||||||
Sbjct: 1365 cacttggaagcat 1353
>gb|AY425991.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper
protein Hox10 mRNA, complete cds
Length = 3252
Score = 866 bits (437), Expect = 0.0
Identities = 749/853 (87%), Gaps = 3/853 (0%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||| |
Sbjct: 2202 ctgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttcatctg 2143
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct: 2142 ggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagacttctcgt 2086
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||| ||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct: 2085 ctattccagtgcagagctgaagcaggtggatatcccttgaaagaagagcttcatcatgag 2026
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 2025 taagaggttgaccctcaaggcgaacaacttcaagaatctcctcattctcaactgtgtgag 1966
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
||||||| ||||| || || | ||||||||||||||||||||||||||||| |||||| |
Sbjct: 1965 caagtggaatgatgatttggctcccagaaaatctcatgggtcgcaacccagtaagtgaac 1906
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| ||||| || |||| | |||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 1905 atgcacttgttttcagagttgaagccaaatatgcatcaatattgtaatcggcccattcag 1846
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
|||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |
Sbjct: 1845 atctatgctccctcagaaatcgaaccagtactgctggaggaacactctgcagtaacattg 1786
Query: 477 atgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtat 536
||||||| ||||| ||||| ||||| ||||||||||| | || ||||||||||| ||
Sbjct: 1785 atgccttagcacatataatacctccgggggctccaaaggcgatgccagcattgctgttac 1726
Query: 537 tcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgccatctcccccca 596
||||||||||||| |||||||||||||||| ||| || ||||||| || ||||| ||||
Sbjct: 1725 tcctaattttcttagttgagttgcaagcaataactacatcttcaacaccgtctccgccca 1666
Query: 597 ttacagaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtc 656
||| |||||| ||||||||||||||||||||||||||||| ||||| || ||||| || |
Sbjct: 1665 ttatagaccacccatcatcattgaaaccactaatggcatcgttaaagcctctgctcagcc 1606
Query: 657 tttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccac 716
|||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| ||||
Sbjct: 1605 tttgactaaaagtccgtagcactgctggttgcctccccaaggcatacaccacttccccac 1546
Query: 717 ttgtttcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaa 776
|||||||||||||||||||||| | ||| || |||||| ||||||||||||||||||| |
Sbjct: 1545 ttgtttcttgagcaatttgtctgatgtgccggagtgccgcagtagtcattttctgagcga 1486
Query: 777 ctactctagaagactcatatagtggtcgaagcacttcaggaacactccatgcctcgagat 836
|||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 1485 ctacccttgaagattcatagagtggccgaagcacctcaggaacactccatgcctcaagat 1426
Query: 837 ctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgcactaaatacc 896
| |||||||||||||| |||||||| || || |||||| |||||||| || | || |
Sbjct: 1425 ccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaaccaggtatc 1366
Query: 897 cacttggaagcat 909
|||||||||||||
Sbjct: 1365 cacttggaagcat 1353
>ref|XM_468564.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2574
Score = 864 bits (436), Expect = 0.0
Identities = 748/852 (87%), Gaps = 3/852 (0%)
Strand = Plus / Minus
Query: 58 tgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccgg 117
||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||| ||
Sbjct: 1791 tgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttcatctgg 1732
Query: 118 aaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcatc 177
|||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||| ||
Sbjct: 1731 gaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagacttctcgtc 1675
Query: 178 tattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgagt 237
|||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct: 1674 tattccagtgcagagctgaagcaggtggatatcccttgaaagaagagcttcatcatgagt 1615
Query: 238 aagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgagc 297
||||||||| || |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 1614 aagaggttgaccctcaaggcgaacaacttcaagaatctcctcattctcaactgtgtgagc 1555
Query: 298 aagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagca 357
|||||| ||||| || || | ||||||||||||||||||||||||||||| |||||| ||
Sbjct: 1554 aagtggaatgatgatttggctcccagaaaatctcatgggtcgcaacccagtaagtgaaca 1495
Query: 358 cgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcaga 417
||||| || |||| | |||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1494 tgcacttgttttcagagttgaagccaaatatgcatcaatattgtaatcggcccattcaga 1435
Query: 418 tctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgga 477
||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||
Sbjct: 1434 tctatgctccctcagaaatcgaaccagtactgctggaggaacactctgcagtaacattga 1375
Query: 478 tgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtatt 537
|||||| ||||| ||||| ||||| ||||||||||| | || ||||||||||| || |
Sbjct: 1374 tgccttagcacatataatacctccgggggctccaaaggcgatgccagcattgctgttact 1315
Query: 538 cctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgccatctccccccat 597
|||||||||||| |||||||||||||||| ||| || ||||||| || ||||| |||||
Sbjct: 1314 cctaattttcttagttgagttgcaagcaataactacatcttcaacaccgtctccgcccat 1255
Query: 598 tacagaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtct 657
|| |||||| ||||||||||||||||||||||||||||| ||||| || ||||| || ||
Sbjct: 1254 tatagaccacccatcatcattgaaaccactaatggcatcgttaaagcctctgctcagcct 1195
Query: 658 ttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccact 717
||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| |||||
Sbjct: 1194 ttgactaaaagtccgtagcactgctggttgcctccccaaggcatacaccacttccccact 1135
Query: 718 tgtttcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaac 777
||||||||||||||||||||| | ||| || |||||| ||||||||||||||||||| ||
Sbjct: 1134 tgtttcttgagcaatttgtctgatgtgccggagtgccgcagtagtcattttctgagcgac 1075
Query: 778 tactctagaagactcatatagtggtcgaagcacttcaggaacactccatgcctcgagatc 837
||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 1074 tacccttgaagattcatagagtggccgaagcacctcaggaacactccatgcctcaagatc 1015
Query: 838 tagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgcactaaataccc 897
|||||||||||||| |||||||| || || |||||| |||||||| || | || ||
Sbjct: 1014 cagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaaccaggtatcc 955
Query: 898 acttggaagcat 909
||||||||||||
Sbjct: 954 acttggaagcat 943
>emb|AJ556802.1|OSA556802 Oryza sativa (japonica cultivar-group) partial mRNA for HD-ZIP
protein (hb1 gene)
Length = 1354
Score = 718 bits (362), Expect = 0.0
Identities = 598/676 (88%), Gaps = 3/676 (0%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||| |
Sbjct: 673 ctgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttcatctg 614
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct: 613 ggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagacttctcgt 557
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||| ||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct: 556 ctattccagtgcagagctgaagcaggtggatatcccttgaaagaagagcttcatcatgag 497
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 496 taagaggttgaccctcaaggcgaacaacttcaagaatctcctcattctcaactgtgtgag 437
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
||||||| ||||| || || | ||||||||||||||||||||||||||||| |||||| |
Sbjct: 436 caagtggaatgatgatttggctcccagaaaatctcatgggtcgcaacccagtaagtgaac 377
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| ||||| || |||| | |||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 376 atgcacttgttttcagagttgaagccaaatatgcatcaatattgtaatcggcccattcag 317
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
|||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |
Sbjct: 316 atctatgctccctcagaaatcgaaccagtactgctggaggaacactctgcagtaacattg 257
Query: 477 atgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtat 536
||||||| ||||| ||||| ||||| ||||||||||| | || ||||||||||| ||
Sbjct: 256 atgccttagcacatataatacctccgggggctccaaaggcgatgccagcattgctgttac 197
Query: 537 tcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgccatctcccccca 596
||||||||||||| |||||||||||||||| ||| || ||||||| || ||||| ||||
Sbjct: 196 tcctaattttcttagttgagttgcaagcaataactacatcttcaacaccgtctccgccca 137
Query: 597 ttacagaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtc 656
||| |||||| ||||||||||||||||||||||||||||| ||||| || ||||| || |
Sbjct: 136 ttatagaccacccatcatcattgaaaccactaatggcatcgttaaagcctctgctcagcc 77
Query: 657 tttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccac 716
|||||||||| |||||||| ||||| |||||||| |||||||||||||| ||||| ||||
Sbjct: 76 tttgactaaaagtccgtagcactgctggttgcctccccaaggcatacaccacttccccac 17
Query: 717 ttgtttcttgagcaat 732
||||||||||||||||
Sbjct: 16 ttgtttcttgagcaat 1
>dbj|AK059498.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H11, full
insert sequence
Length = 1573
Score = 555 bits (280), Expect = e-155
Identities = 477/542 (88%), Gaps = 3/542 (0%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||| |
Sbjct: 539 ctgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttcatctg 480
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||||| |
Sbjct: 479 ggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagacttctcgt 423
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||| ||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct: 422 ctattccagtgcagagctgaagcaggtggatatcccttgaaagaagagcttcatcatgag 363
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 362 taagaggttgaccctcaaggcgaacaacttcaagaatctcctcattctcaactgtgtgag 303
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
||||||| ||||| || || | ||||||||||||||||||||||||||||| |||||| |
Sbjct: 302 caagtggaatgatgatttggctcccagaaaatctcatgggtcgcaacccagtaagtgaac 243
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| ||||| || |||| | |||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 242 atgcacttgttttcagagttgaagccaaatatgcatcaatattgtaatcggcccattcag 183
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
|||||||||||||||||||||| ||||||||||| || || || |||||||||||||| |
Sbjct: 182 atctatgctccctcagaaatcgaaccagtactgctggaggaacactctgcagtaacattg 123
Query: 477 atgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtat 536
||||||| ||||| ||||| ||||| ||||||||||| | || ||||||||||| ||
Sbjct: 122 atgccttagcacatataatacctccgggggctccaaaggcgatgccagcattgctgttac 63
Query: 537 tcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgccatctcccccca 596
||||||||||||| |||||||||||||||| ||| || ||||||| || ||||| ||||
Sbjct: 62 tcctaattttcttagttgagttgcaagcaataactacatcttcaacaccgtctccgccca 3
Query: 597 tt 598
||
Sbjct: 2 tt 1
>ref|NM_197030.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine
zipper protein (OSJNBa0093B11.11), mRNA
Length = 2523
Score = 521 bits (263), Expect = e-145
Identities = 710/859 (82%), Gaps = 3/859 (0%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||| || || ||||| ||||||||||| || || || || ||||||||||| |
Sbjct: 1798 ctgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatcag 1739
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| ||| ||||||| ||||||||| | |||||||||||| |||| |||| ||||||||||
Sbjct: 1738 ggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctcat 1679
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||||||||| || ||||| || || || || | ||| | |||||||| |
Sbjct: 1678 ctattccagtgcaaagctgaagcaggtgaatatctctagacataagaccatcatcatgtg 1619
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||| | |||||||||||| ||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 1618 taagtgcttgtccttcaagacggacaacttctaaaatctcctcattctccaccgtgtgag 1559
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
|||||||||| || ||||| | ||||||||||||||| || ||||||||||||||||| |
Sbjct: 1558 caagtggcataatgatctggctcccagaaaatctcataggccgcaacccaggaagtgaac 1499
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| | || ||||||| |||||||| |||| ||||| | || ||||| ||||||||||
Sbjct: 1498 atgagcttgtcttcagagatgaagctgaatatgcatcgaagttataatccgcccattcag 1439
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
| | ||| ||||||| |||||| |||| ||||| |||||||| |||||||||| |||||
Sbjct: 1438 aacgatgttccctcaaaaatcgaaccaaaactgcaggtgggacactctgcagtagcatgg 1379
Query: 477 atgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtat 536
||||||| ||||| |||| |||||||| | | |||| | | | | | | |||||||||
Sbjct: 1378 atgccttagcacatataacacctcctggagttacaaaagcattggccgaagtgctagtat 1319
Query: 537 tcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgccatctcccccca 596
|||||| |||| ||| |||||||||| | || |||||||||||||| || ||||
Sbjct: 1318 tcctaaccttct---ttgcattgcaagcaatgatcacatcttcaatgccatccccaccca 1262
Query: 597 ttacagaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtc 656
| ||||||||||||||||||||||||||||| || |||||||| || || || || | |
Sbjct: 1261 tgacagaccaaccatcatcattgaaaccacttatagcatcattgaagcctctactcaacc 1202
Query: 657 tttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccac 716
| |||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |
Sbjct: 1201 tctgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgc 1142
Query: 717 ttgtttcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaa 776
|||| ||||||||||||||||| | ||| || ||||| |||||||||||||||||||||
Sbjct: 1141 ttgtctcttgagcaatttgtctgatgtgccgtagtgctgcagtagtcattttctgagcaa 1082
Query: 777 ctactctagaagactcatatagtggtcgaagcacttcaggaacactccatgcctcgagat 836
|||| ||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| ||||
Sbjct: 1081 ctaccctagatgactcgtagagtggccgaagcacttctggaacactccaagcctcaagat 1022
Query: 837 ctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgcactaaatacc 896
| ||||||||||| |||||||| || || || ||| |||||||||||||||| ||| |
Sbjct: 1021 ccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgcactagatagc 962
Query: 897 cacttggaagcatctcagc 915
| || ||||||||||||||
Sbjct: 961 cgctaggaagcatctcagc 943
>dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109G06, full
insert sequence
Length = 3000
Score = 513 bits (259), Expect = e-143
Identities = 709/859 (82%), Gaps = 3/859 (0%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||| || || ||||| ||||||||||| || || || || ||||||||||| |
Sbjct: 1926 ctgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatcag 1867
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| ||| ||||||| ||||||||| | |||||||||||| |||| |||| ||||||||||
Sbjct: 1866 ggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctcat 1807
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||||||||| || ||||| || || || || | ||| | |||||||| |
Sbjct: 1806 ctattccagtgcaaagctgaagcaggtgaatatctctagacataagaccatcatcatgtg 1747
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||| | |||||||||||| ||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 1746 taagtgcttgtccttcaagacggacaacttctaaaatctcctcattctccaccgtgtgag 1687
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
|||||||||| || ||||| | ||||||||||||||| || ||||||||||||||||| |
Sbjct: 1686 caagtggcataatgatctggctcccagaaaatctcataggccgcaacccaggaagtgaac 1627
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| | || ||||||| |||||||| |||| ||||| | || ||||| ||||||||||
Sbjct: 1626 atgagcttgtcttcagagatgaagctgaatatgcatcgaagttataatccgcccattcag 1567
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
| | ||| ||||||| |||||| |||| ||||| |||||||| |||||||||| |||||
Sbjct: 1566 aacgatgttccctcaaaaatcgaaccaaaactgcaggtgggacactctgcagtagcatgg 1507
Query: 477 atgccttcgcacaaataatgcctcctggggctccaaatgtaatcccagcattgctagtat 536
||||||| ||||| |||| |||||||| | | |||| | | | | | | |||||||||
Sbjct: 1506 atgccttagcacatataacacctcctggagttacaaaagcattggccgaagtgctagtat 1447
Query: 537 tcctaattttcttggttgagttgcaagcaacaacaacgtcttcaatgccatctcccccca 596
|||||| |||| ||| |||||||||| | || |||||||||||||| || ||||
Sbjct: 1446 tcctaaccttct---ttgcattgcaagcaatgatcacatcttcaatgccatccccaccca 1390
Query: 597 ttacagaccaaccatcatcattgaaaccactaatggcatcattaaaccccctgcttagtc 656
| |||||||||||||||||| |||||||||| || |||||||| || || || || | |
Sbjct: 1389 tgacagaccaaccatcatcactgaaaccacttatagcatcattgaagcctctactcaacc 1330
Query: 657 tttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccac 716
| |||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |
Sbjct: 1329 tctgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgc 1270
Query: 717 ttgtttcttgagcaatttgtctaaggtggcgcagtgccacagtagtcattttctgagcaa 776
|||| ||||||||||||||||| | ||| || ||||| |||||||||||||||||||||
Sbjct: 1269 ttgtctcttgagcaatttgtctgatgtgccgtagtgctgcagtagtcattttctgagcaa 1210
Query: 777 ctactctagaagactcatatagtggtcgaagcacttcaggaacactccatgcctcgagat 836
|||| ||||| ||||| || ||||| ||||||||||| ||||||||||| ||||| ||||
Sbjct: 1209 ctaccctagatgactcgtagagtggccgaagcacttctggaacactccaagcctcaagat 1150
Query: 837 ctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgcactaaatacc 896
| ||||||||||| |||||||| || || || ||| |||||||||||||||| ||| |
Sbjct: 1149 ccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgcactagatagc 1090
Query: 897 cacttggaagcatctcagc 915
| || ||||||||||||||
Sbjct: 1089 cgctaggaagcatctcagc 1071
>dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098N12, full
insert sequence
Length = 3227
Score = 293 bits (148), Expect = 9e-077
Identities = 373/448 (83%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||| | || ||||| ||||||||||| || || || || |||||||||| |
Sbjct: 2150 ctgttttcatgttcagcggtataacacgaaagcctgaagatattaactgagcatcatcag 2091
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| ||| ||||||| ||||||||| | |||||||||||| |||| |||| ||||||||||
Sbjct: 2090 ggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctcat 2031
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||||||||| || ||||| || || || || | ||| | |||||||| |
Sbjct: 2030 ctattccagtgcaaagctgaagcaggtgaatatctctagacataagaccatcatcatgtg 1971
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||| | |||||||||||| ||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 1970 taagtgcttgtccttcaagacggacaacttctaaaatctcctcattctccaccgtgtgag 1911
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
|||||||||| || ||||| | ||||||||||||||| || ||||||||||||||||| |
Sbjct: 1910 caagtggcataatgatctggctcccagaaaatctcataggccgcaacccaggaagtgaac 1851
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| | || ||||||| |||||||| |||| ||||| | || ||||| ||||||||||
Sbjct: 1850 atgagcttgtcttcagagatgaagctgaatatgcatcgaagttataatccgcccattcag 1791
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
| | ||| ||||||| |||||| |||| ||||| |||||||| |||||||||| |||||
Sbjct: 1790 aacgatgttccctcaaaaatcgaaccaaaactgcaggtgggacactctgcagtagcatgg 1731
Query: 477 atgccttcgcacaaataatgcctcctgg 504
||||||| ||||| |||| ||||||||
Sbjct: 1730 atgccttagcacatataacacctcctgg 1703
Score = 252 bits (127), Expect = 3e-064
Identities = 287/341 (84%)
Strand = Plus / Minus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 1635 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 1576
Query: 635 tcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgccttccc 694
||||| || || || || | || |||||||| ||||| | ||| ||||||||||| |||
Sbjct: 1575 tcattgaagcctctactcaacctctgactaaatgtccgcaaaacagcaggttgcctcccc 1516
Query: 695 aaggcatacactacttctccacttgtttcttgagcaatttgtctaaggtggcgcagtgcc 754
|| || || || || || || ||||| ||||||||||||||||| | ||| || |||||
Sbjct: 1515 aaagcgtatacaacctccccgcttgtctcttgagcaatttgtctgatgtgccgtagtgct 1456
Query: 755 acagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttca 814
||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 1455 gcagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttct 1396
Query: 815 ggaacactccatgcctcgagatctagatggtccactatatgcacaatcgaacctnnacct 874
||||||||||| ||||| ||||| ||||||||||| |||||||| || || || |||
Sbjct: 1395 ggaacactccaagcctcaagatccagatggtccacaatatgcacgatggagccaccaccc 1336
Query: 875 tcgcatgggcgcactaaatacccacttggaagcatctcagc 915
|||||||||||||||| ||| || || | ||||||||||||
Sbjct: 1335 tcgcatgggcgcactagatagccgctagtaagcatctcagc 1295
>gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper
protein Hox9 mRNA, complete cds
Length = 3174
Score = 293 bits (148), Expect = 9e-077
Identities = 373/448 (83%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||| | || ||||| ||||||||||| || || || || |||||||||| |
Sbjct: 2079 ctgttttcatgttcagcggtataacacgaaagcctgaagatattaactgagcatcatcag 2020
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| ||| ||||||| ||||||||| | |||||||||||| |||| |||| ||||||||||
Sbjct: 2019 ggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctcat 1960
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||||||||| || ||||| || || || || | ||| | |||||||| |
Sbjct: 1959 ctattccagtgcaaagctgaagcaggtgaatatctctagacataagaccatcatcatgtg 1900
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||| | |||||||||||| ||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 1899 taagtgcttgtccttcaagacggacaacttctaaaatctcctcattctccaccgtgtgag 1840
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtgagc 356
|||||||||| || ||||| | ||||||||||||||| || ||||||||||||||||| |
Sbjct: 1839 caagtggcataatgatctggctcccagaaaatctcataggccgcaacccaggaagtgaac 1780
Query: 357 acgcactggtcttcaatgatgaagccaaatacgcatcaatattgtaatcagcccattcag 416
| | || ||||||| |||||||| |||| ||||| | || ||||| ||||||||||
Sbjct: 1779 atgagcttgtcttcagagatgaagctgaatatgcatcgaagttataatccgcccattcag 1720
Query: 417 atctatgctccctcagaaatcgtaccagtactgccggtgggacgctctgcagtaacatgg 476
| | ||| ||||||| |||||| |||| ||||| |||||||| |||||||||| |||||
Sbjct: 1719 aacgatgttccctcaaaaatcgaaccaaaactgcaggtgggacactctgcagtagcatgg 1660
Query: 477 atgccttcgcacaaataatgcctcctgg 504
||||||| ||||| |||| ||||||||
Sbjct: 1659 atgccttagcacatataacacctcctgg 1632
Score = 252 bits (127), Expect = 3e-064
Identities = 287/341 (84%)
Strand = Plus / Minus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 1564 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 1505
Query: 635 tcattaaaccccctgcttagtctttgactaaaggtccgtagaactgcaggttgccttccc 694
||||| || || || || | || |||||||| ||||| | ||| ||||||||||| |||
Sbjct: 1504 tcattgaagcctctactcaacctctgactaaatgtccgcaaaacagcaggttgcctcccc 1445
Query: 695 aaggcatacactacttctccacttgtttcttgagcaatttgtctaaggtggcgcagtgcc 754
|| || || || || || || ||||| ||||||||||||||||| | ||| || |||||
Sbjct: 1444 aaagcgtatacaacctccccgcttgtctcttgagcaatttgtctgatgtgccgtagtgct 1385
Query: 755 acagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttca 814
||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||
Sbjct: 1384 gcagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttct 1325
Query: 815 ggaacactccatgcctcgagatctagatggtccactatatgcacaatcgaacctnnacct 874
||||||||||| ||||| ||||| ||||||||||| |||||||| || || || |||
Sbjct: 1324 ggaacactccaagcctcaagatccagatggtccacaatatgcacgatggagccaccaccc 1265
Query: 875 tcgcatgggcgcactaaatacccacttggaagcatctcagc 915
|||||||||||||||| ||| || || | ||||||||||||
Sbjct: 1264 tcgcatgggcgcactagatagccgctagtaagcatctcagc 1224
>dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E12, full
insert sequence
Length = 1481
Score = 242 bits (122), Expect = 3e-061
Identities = 254/298 (85%)
Strand = Plus / Minus
Query: 57 ctgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatccg 116
|||||||||| || || ||||| ||||||||||| || || || || ||||||||||| |
Sbjct: 338 ctgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatcag 279
Query: 117 gaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctcat 176
| ||| ||||||| ||||||||| | |||||||||||| |||| |||| ||||||||||
Sbjct: 278 ggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctcat 219
Query: 177 ctattccagtgcaaagctggagaaggtggatgtcccttgaaagaagggcttcatcatgag 236
||||||||||||||||||| || ||||| || || || || | ||| | |||||||| |
Sbjct: 218 ctattccagtgcaaagctgaagcaggtgaatatctctagacataagaccatcatcatgtg 159
Query: 237 taagaggttgtccttcaaggcggacaacttcaagaatctcctcgttctccactgtgtgag 296
|||| | |||||||||||| ||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 158 taagtgcttgtccttcaagacggacaacttctaaaatctcctcattctccaccgtgtgag 99
Query: 297 caagtggcatgatcatctgccccccagaaaatctcatgggtcgcaacccaggaagtga 354
|||||||||| || ||||| | ||||||||||||||| || |||||||||||||||||
Sbjct: 98 caagtggcataatgatctggctcccagaaaatctcataggccgcaacccaggaagtga 41
>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0043C10, complete sequence
Length = 108688
Score = 208 bits (105), Expect = 4e-051
Identities = 159/177 (89%)
Strand = Plus / Plus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| ||||| ||||||||||||||||| ||||| || || | |||||||||||||||
Sbjct: 82758 ctcctcattctcaactgtgtgagcaagtggaatgatgatttggctcccagaaaatctcat 82817
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|||||||||||||| |||||| || ||||| || |||| | |||||||||||| |||||
Sbjct: 82818 gggtcgcaacccagtaagtgaacatgcacttgttttcagagttgaagccaaatatgcatc 82877
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgc 450
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 82878 aatattgtaatcggcccattcagatctatgctccctcagaaatcgaaccagtactgc 82934
Score = 174 bits (88), Expect = 6e-041
Identities = 157/180 (87%)
Strand = Plus / Plus
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatccc 522
|||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 83372 ctgcagtaacattgatgccttagcacatataatacctccgggggctccaaaggcgatgcc 83431
Query: 523 agcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaat 582
||||||||| || ||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 83432 agcattgctgttactcctaattttcttagttgagttgcaagcaataactacatcttcaac 83491
Query: 583 gccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaa 642
|| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 83492 accgtctccgcccattatagaccacccatcatcattgaaaccactaatggcatcgttaaa 83551
Score = 155 bits (78), Expect = 5e-035
Identities = 128/144 (88%), Gaps = 3/144 (2%)
Strand = Plus / Plus
Query: 52 cttaactgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatc 111
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 81985 cttaactgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttc 82044
Query: 112 atccggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagattt 171
||| || |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 82045 atctgggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagactt 82101
Query: 172 ctcatctattccagtgcaaagctg 195
||| |||||||||||||| |||||
Sbjct: 82102 ctcgtctattccagtgcagagctg 82125
Score = 121 bits (61), Expect = 7e-025
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 83637 cctgctcagcctttgactaaaagtccgtagcactgctggttgcctccccaaggcatacac 83696
Query: 706 tacttctccacttgtttcttgagcaatttgtct 738
||||| ||||||||||||||||||||||||||
Sbjct: 83697 cacttccccacttgtttcttgagcaatttgtct 83729
Score = 111 bits (56), Expect = 7e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 200 aggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttcaaggcgg 259
|||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 82471 aggtggatatcccttgaaagaagagcttcatcatgagtaagaggttgaccctcaaggcga 82530
Query: 260 acaacttcaagaatct 275
||||||||||||||||
Sbjct: 82531 acaacttcaagaatct 82546
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 84089 cagtagtcattttctgagcgactacccttgaagattcatagagtggccgaagcacctcag 84148
Query: 816 gaacactccatgcct 830
|||||||||||||||
Sbjct: 84149 gaacactccatgcct 84163
Score = 56.0 bits (28), Expect = 4e-005
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| |||||||||||||| |||||||| || || |||||| |||||||| |
Sbjct: 84267 cctcaagatccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaa 84326
Query: 888 ctaaatacccacttggaagcat 909
| | || ||||||||||||||
Sbjct: 84327 ccaggtatccacttggaagcat 84348
>gb|AACV01005752.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005752, whole
genome shotgun sequence
Length = 45615
Score = 208 bits (105), Expect = 4e-051
Identities = 159/177 (89%)
Strand = Plus / Plus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| ||||| ||||||||||||||||| ||||| || || | |||||||||||||||
Sbjct: 27446 ctcctcattctcaactgtgtgagcaagtggaatgatgatttggctcccagaaaatctcat 27505
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|||||||||||||| |||||| || ||||| || |||| | |||||||||||| |||||
Sbjct: 27506 gggtcgcaacccagtaagtgaacatgcacttgttttcagagttgaagccaaatatgcatc 27565
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgc 450
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 27566 aatattgtaatcggcccattcagatctatgctccctcagaaatcgaaccagtactgc 27622
Score = 174 bits (88), Expect = 6e-041
Identities = 157/180 (87%)
Strand = Plus / Plus
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatccc 522
|||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 28060 ctgcagtaacattgatgccttagcacatataatacctccgggggctccaaaggcgatgcc 28119
Query: 523 agcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaat 582
||||||||| || ||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 28120 agcattgctgttactcctaattttcttagttgagttgcaagcaataactacatcttcaac 28179
Query: 583 gccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaa 642
|| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 28180 accgtctccgcccattatagaccacccatcatcattgaaaccactaatggcatcgttaaa 28239
Score = 155 bits (78), Expect = 5e-035
Identities = 128/144 (88%), Gaps = 3/144 (2%)
Strand = Plus / Plus
Query: 52 cttaactgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatc 111
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 26673 cttaactgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttc 26732
Query: 112 atccggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagattt 171
||| || |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 26733 atctgggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagactt 26789
Query: 172 ctcatctattccagtgcaaagctg 195
||| |||||||||||||| |||||
Sbjct: 26790 ctcgtctattccagtgcagagctg 26813
Score = 121 bits (61), Expect = 7e-025
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 28325 cctgctcagcctttgactaaaagtccgtagcactgctggttgcctccccaaggcatacac 28384
Query: 706 tacttctccacttgtttcttgagcaatttgtct 738
||||| ||||||||||||||||||||||||||
Sbjct: 28385 cacttccccacttgtttcttgagcaatttgtct 28417
Score = 111 bits (56), Expect = 7e-022
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 200 aggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttcaaggcgg 259
|||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 27159 aggtggatatcccttgaaagaagagcttcatcatgagtaagaggttgaccctcaaggcga 27218
Query: 260 acaacttcaagaatct 275
||||||||||||||||
Sbjct: 27219 acaacttcaagaatct 27234
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 28777 cagtagtcattttctgagcgactacccttgaagattcatagagtggccgaagcacctcag 28836
Query: 816 gaacactccatgcct 830
|||||||||||||||
Sbjct: 28837 gaacactccatgcct 28851
Score = 56.0 bits (28), Expect = 4e-005
Identities = 68/82 (82%)
Strand = Plus / Plus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| |||||||||||||| |||||||| || || |||||| |||||||| |
Sbjct: 28955 cctcaagatccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaa 29014
Query: 888 ctaaatacccacttggaagcat 909
| | || ||||||||||||||
Sbjct: 29015 ccaggtatccacttggaagcat 29036
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 208 bits (105), Expect = 4e-051
Identities = 159/177 (89%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| ||||| ||||||||||||||||| ||||| || || | |||||||||||||||
Sbjct: 533158 ctcctcattctcaactgtgtgagcaagtggaatgatgatttggctcccagaaaatctcat 533099
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|||||||||||||| |||||| || ||||| || |||| | |||||||||||| |||||
Sbjct: 533098 gggtcgcaacccagtaagtgaacatgcacttgttttcagagttgaagccaaatatgcatc 533039
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgc 450
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 533038 aatattgtaatcggcccattcagatctatgctccctcagaaatcgaaccagtactgc 532982
Score = 174 bits (88), Expect = 6e-041
Identities = 157/180 (87%)
Strand = Plus / Minus
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatccc 522
|||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 532544 ctgcagtaacattgatgccttagcacatataatacctccgggggctccaaaggcgatgcc 532485
Query: 523 agcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaat 582
||||||||| || ||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 532484 agcattgctgttactcctaattttcttagttgagttgcaagcaataactacatcttcaac 532425
Query: 583 gccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaa 642
|| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 532424 accgtctccgcccattatagaccacccatcatcattgaaaccactaatggcatcgttaaa 532365
Score = 155 bits (78), Expect = 5e-035
Identities = 128/144 (88%), Gaps = 3/144 (2%)
Strand = Plus / Minus
Query: 52 cttaactgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatc 111
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 533931 cttaactgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttc 533872
Query: 112 atccggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagattt 171
||| || |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 533871 atctgggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagactt 533815
Query: 172 ctcatctattccagtgcaaagctg 195
||| |||||||||||||| |||||
Sbjct: 533814 ctcgtctattccagtgcagagctg 533791
Score = 121 bits (61), Expect = 7e-025
Identities = 85/93 (91%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 532279 cctgctcagcctttgactaaaagtccgtagcactgctggttgcctccccaaggcatacac 532220
Query: 706 tacttctccacttgtttcttgagcaatttgtct 738
||||| ||||||||||||||||||||||||||
Sbjct: 532219 cacttccccacttgtttcttgagcaatttgtct 532187
Score = 111 bits (56), Expect = 7e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 200 aggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttcaaggcgg 259
|||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 533445 aggtggatatcccttgaaagaagagcttcatcatgagtaagaggttgaccctcaaggcga 533386
Query: 260 acaacttcaagaatct 275
||||||||||||||||
Sbjct: 533385 acaacttcaagaatct 533370
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 531827 cagtagtcattttctgagcgactacccttgaagattcatagagtggccgaagcacctcag 531768
Query: 816 gaacactccatgcct 830
|||||||||||||||
Sbjct: 531767 gaacactccatgcct 531753
Score = 56.0 bits (28), Expect = 4e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| |||||||||||||| |||||||| || || |||||| |||||||| |
Sbjct: 531649 cctcaagatccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaa 531590
Query: 888 ctaaatacccacttggaagcat 909
| | || ||||||||||||||
Sbjct: 531589 ccaggtatccacttggaagcat 531568
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 208 bits (105), Expect = 4e-051
Identities = 159/177 (89%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| ||||| ||||||||||||||||| ||||| || || | |||||||||||||||
Sbjct: 546986 ctcctcattctcaactgtgtgagcaagtggaatgatgatttggctcccagaaaatctcat 546927
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|||||||||||||| |||||| || ||||| || |||| | |||||||||||| |||||
Sbjct: 546926 gggtcgcaacccagtaagtgaacatgcacttgttttcagagttgaagccaaatatgcatc 546867
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgc 450
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 546866 aatattgtaatcggcccattcagatctatgctccctcagaaatcgaaccagtactgc 546810
Score = 174 bits (88), Expect = 6e-041
Identities = 157/180 (87%)
Strand = Plus / Minus
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatccc 522
|||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 546372 ctgcagtaacattgatgccttagcacatataatacctccgggggctccaaaggcgatgcc 546313
Query: 523 agcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaat 582
||||||||| || ||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 546312 agcattgctgttactcctaattttcttagttgagttgcaagcaataactacatcttcaac 546253
Query: 583 gccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaa 642
|| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 546252 accgtctccgcccattatagaccacccatcatcattgaaaccactaatggcatcgttaaa 546193
Score = 155 bits (78), Expect = 5e-035
Identities = 128/144 (88%), Gaps = 3/144 (2%)
Strand = Plus / Minus
Query: 52 cttaactgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatc 111
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 547759 cttaactgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttc 547700
Query: 112 atccggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagattt 171
||| || |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 547699 atctgggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagactt 547643
Query: 172 ctcatctattccagtgcaaagctg 195
||| |||||||||||||| |||||
Sbjct: 547642 ctcgtctattccagtgcagagctg 547619
Score = 121 bits (61), Expect = 7e-025
Identities = 85/93 (91%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 546107 cctgctcagcctttgactaaaagtccgtagcactgctggttgcctccccaaggcatacac 546048
Query: 706 tacttctccacttgtttcttgagcaatttgtct 738
||||| ||||||||||||||||||||||||||
Sbjct: 546047 cacttccccacttgtttcttgagcaatttgtct 546015
Score = 111 bits (56), Expect = 7e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 200 aggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttcaaggcgg 259
|||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 547273 aggtggatatcccttgaaagaagagcttcatcatgagtaagaggttgaccctcaaggcga 547214
Query: 260 acaacttcaagaatct 275
||||||||||||||||
Sbjct: 547213 acaacttcaagaatct 547198
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 545655 cagtagtcattttctgagcgactacccttgaagattcatagagtggccgaagcacctcag 545596
Query: 816 gaacactccatgcct 830
|||||||||||||||
Sbjct: 545595 gaacactccatgcct 545581
Score = 56.0 bits (28), Expect = 4e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| |||||||||||||| |||||||| || || |||||| |||||||| |
Sbjct: 545477 cctcaagatccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaa 545418
Query: 888 ctaaatacccacttggaagcat 909
| | || ||||||||||||||
Sbjct: 545417 ccaggtatccacttggaagcat 545396
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 208 bits (105), Expect = 4e-051
Identities = 159/177 (89%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| ||||| ||||||||||||||||| ||||| || || | |||||||||||||||
Sbjct: 739348 ctcctcattctcaactgtgtgagcaagtggaatgatgatttggctcccagaaaatctcat 739289
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|||||||||||||| |||||| || ||||| || |||| | |||||||||||| |||||
Sbjct: 739288 gggtcgcaacccagtaagtgaacatgcacttgttttcagagttgaagccaaatatgcatc 739229
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgc 450
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 739228 aatattgtaatcggcccattcagatctatgctccctcagaaatcgaaccagtactgc 739172
Score = 174 bits (88), Expect = 6e-041
Identities = 157/180 (87%)
Strand = Plus / Minus
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatccc 522
|||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 738734 ctgcagtaacattgatgccttagcacatataatacctccgggggctccaaaggcgatgcc 738675
Query: 523 agcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaat 582
||||||||| || ||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 738674 agcattgctgttactcctaattttcttagttgagttgcaagcaataactacatcttcaac 738615
Query: 583 gccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaa 642
|| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 738614 accgtctccgcccattatagaccacccatcatcattgaaaccactaatggcatcgttaaa 738555
Score = 155 bits (78), Expect = 5e-035
Identities = 128/144 (88%), Gaps = 3/144 (2%)
Strand = Plus / Minus
Query: 52 cttaactgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatc 111
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 740121 cttaactgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttc 740062
Query: 112 atccggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagattt 171
||| || |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 740061 atctgggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagactt 740005
Query: 172 ctcatctattccagtgcaaagctg 195
||| |||||||||||||| |||||
Sbjct: 740004 ctcgtctattccagtgcagagctg 739981
Score = 121 bits (61), Expect = 7e-025
Identities = 85/93 (91%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 738469 cctgctcagcctttgactaaaagtccgtagcactgctggttgcctccccaaggcatacac 738410
Query: 706 tacttctccacttgtttcttgagcaatttgtct 738
||||| ||||||||||||||||||||||||||
Sbjct: 738409 cacttccccacttgtttcttgagcaatttgtct 738377
Score = 111 bits (56), Expect = 7e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 200 aggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttcaaggcgg 259
|||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 739635 aggtggatatcccttgaaagaagagcttcatcatgagtaagaggttgaccctcaaggcga 739576
Query: 260 acaacttcaagaatct 275
||||||||||||||||
Sbjct: 739575 acaacttcaagaatct 739560
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 738017 cagtagtcattttctgagcgactacccttgaagattcatagagtggccgaagcacctcag 737958
Query: 816 gaacactccatgcct 830
|||||||||||||||
Sbjct: 737957 gaacactccatgcct 737943
Score = 56.0 bits (28), Expect = 4e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| |||||||||||||| |||||||| || || |||||| |||||||| |
Sbjct: 737839 cctcaagatccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaa 737780
Query: 888 ctaaatacccacttggaagcat 909
| | || ||||||||||||||
Sbjct: 737779 ccaggtatccacttggaagcat 737758
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 208 bits (105), Expect = 4e-051
Identities = 159/177 (89%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| ||||| ||||||||||||||||| ||||| || || | |||||||||||||||
Sbjct: 533158 ctcctcattctcaactgtgtgagcaagtggaatgatgatttggctcccagaaaatctcat 533099
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|||||||||||||| |||||| || ||||| || |||| | |||||||||||| |||||
Sbjct: 533098 gggtcgcaacccagtaagtgaacatgcacttgttttcagagttgaagccaaatatgcatc 533039
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgc 450
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 533038 aatattgtaatcggcccattcagatctatgctccctcagaaatcgaaccagtactgc 532982
Score = 174 bits (88), Expect = 6e-041
Identities = 157/180 (87%)
Strand = Plus / Minus
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatccc 522
|||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 532544 ctgcagtaacattgatgccttagcacatataatacctccgggggctccaaaggcgatgcc 532485
Query: 523 agcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaat 582
||||||||| || ||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 532484 agcattgctgttactcctaattttcttagttgagttgcaagcaataactacatcttcaac 532425
Query: 583 gccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaa 642
|| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 532424 accgtctccgcccattatagaccacccatcatcattgaaaccactaatggcatcgttaaa 532365
Score = 155 bits (78), Expect = 5e-035
Identities = 128/144 (88%), Gaps = 3/144 (2%)
Strand = Plus / Minus
Query: 52 cttaactgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatc 111
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 533931 cttaactgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttc 533872
Query: 112 atccggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagattt 171
||| || |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 533871 atctgggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagactt 533815
Query: 172 ctcatctattccagtgcaaagctg 195
||| |||||||||||||| |||||
Sbjct: 533814 ctcgtctattccagtgcagagctg 533791
Score = 121 bits (61), Expect = 7e-025
Identities = 85/93 (91%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 532279 cctgctcagcctttgactaaaagtccgtagcactgctggttgcctccccaaggcatacac 532220
Query: 706 tacttctccacttgtttcttgagcaatttgtct 738
||||| ||||||||||||||||||||||||||
Sbjct: 532219 cacttccccacttgtttcttgagcaatttgtct 532187
Score = 111 bits (56), Expect = 7e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 200 aggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttcaaggcgg 259
|||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 533445 aggtggatatcccttgaaagaagagcttcatcatgagtaagaggttgaccctcaaggcga 533386
Query: 260 acaacttcaagaatct 275
||||||||||||||||
Sbjct: 533385 acaacttcaagaatct 533370
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 531827 cagtagtcattttctgagcgactacccttgaagattcatagagtggccgaagcacctcag 531768
Query: 816 gaacactccatgcct 830
|||||||||||||||
Sbjct: 531767 gaacactccatgcct 531753
Score = 56.0 bits (28), Expect = 4e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| |||||||||||||| |||||||| || || |||||| |||||||| |
Sbjct: 531649 cctcaagatccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaa 531590
Query: 888 ctaaatacccacttggaagcat 909
| | || ||||||||||||||
Sbjct: 531589 ccaggtatccacttggaagcat 531568
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 208 bits (105), Expect = 4e-051
Identities = 159/177 (89%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| ||||| ||||||||||||||||| ||||| || || | |||||||||||||||
Sbjct: 533160 ctcctcattctcaactgtgtgagcaagtggaatgatgatttggctcccagaaaatctcat 533101
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|||||||||||||| |||||| || ||||| || |||| | |||||||||||| |||||
Sbjct: 533100 gggtcgcaacccagtaagtgaacatgcacttgttttcagagttgaagccaaatatgcatc 533041
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgc 450
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 533040 aatattgtaatcggcccattcagatctatgctccctcagaaatcgaaccagtactgc 532984
Score = 174 bits (88), Expect = 6e-041
Identities = 157/180 (87%)
Strand = Plus / Minus
Query: 463 ctgcagtaacatggatgccttcgcacaaataatgcctcctggggctccaaatgtaatccc 522
|||||||||||| |||||||| ||||| ||||| ||||| ||||||||||| | || ||
Sbjct: 532546 ctgcagtaacattgatgccttagcacatataatacctccgggggctccaaaggcgatgcc 532487
Query: 523 agcattgctagtattcctaattttcttggttgagttgcaagcaacaacaacgtcttcaat 582
||||||||| || ||||||||||||| |||||||||||||||| ||| || |||||||
Sbjct: 532486 agcattgctgttactcctaattttcttagttgagttgcaagcaataactacatcttcaac 532427
Query: 583 gccatctccccccattacagaccaaccatcatcattgaaaccactaatggcatcattaaa 642
|| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 532426 accgtctccgcccattatagaccacccatcatcattgaaaccactaatggcatcgttaaa 532367
Score = 155 bits (78), Expect = 5e-035
Identities = 128/144 (88%), Gaps = 3/144 (2%)
Strand = Plus / Minus
Query: 52 cttaactgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatc 111
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 533933 cttaactgttttcatatcaagtggtataacacggaagccagaagaaatcaatggagtttc 533874
Query: 112 atccggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagattt 171
||| || |||| ||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct: 533873 atctgggaaat---catcaatcggtgcaaacacaagctgaaaggaggatcccacagactt 533817
Query: 172 ctcatctattccagtgcaaagctg 195
||| |||||||||||||| |||||
Sbjct: 533816 ctcgtctattccagtgcagagctg 533793
Score = 121 bits (61), Expect = 7e-025
Identities = 85/93 (91%)
Strand = Plus / Minus
Query: 646 cctgcttagtctttgactaaaggtccgtagaactgcaggttgccttcccaaggcatacac 705
|||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 532281 cctgctcagcctttgactaaaagtccgtagcactgctggttgcctccccaaggcatacac 532222
Query: 706 tacttctccacttgtttcttgagcaatttgtct 738
||||| ||||||||||||||||||||||||||
Sbjct: 532221 cacttccccacttgtttcttgagcaatttgtct 532189
Score = 111 bits (56), Expect = 7e-022
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 200 aggtggatgtcccttgaaagaagggcttcatcatgagtaagaggttgtccttcaaggcgg 259
|||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct: 533447 aggtggatatcccttgaaagaagagcttcatcatgagtaagaggttgaccctcaaggcga 533388
Query: 260 acaacttcaagaatct 275
||||||||||||||||
Sbjct: 533387 acaacttcaagaatct 533372
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 531829 cagtagtcattttctgagcgactacccttgaagattcatagagtggccgaagcacctcag 531770
Query: 816 gaacactccatgcct 830
|||||||||||||||
Sbjct: 531769 gaacactccatgcct 531755
Score = 56.0 bits (28), Expect = 4e-005
Identities = 68/82 (82%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| |||||||||||||| |||||||| || || |||||| |||||||| |
Sbjct: 531651 cctcaagatccagatggtccactatgtgcacaattgatcccccaccttcacatgggcgaa 531592
Query: 888 ctaaatacccacttggaagcat 909
| | || ||||||||||||||
Sbjct: 531591 ccaggtatccacttggaagcat 531570
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
sequence
Length = 178692
Score = 127 bits (64), Expect = 1e-026
Identities = 121/140 (86%)
Strand = Plus / Plus
Query: 56 actgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatcc 115
||||||||||| || || ||||| ||||||||||| || || || || |||||||||||
Sbjct: 98874 actgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatca 98933
Query: 116 ggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctca 175
|| ||| ||||||| ||||||||| | |||||||||||| |||| |||| |||||||||
Sbjct: 98934 gggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctca 98993
Query: 176 tctattccagtgcaaagctg 195
||||||||||||||||||||
Sbjct: 98994 tctattccagtgcaaagctg 99013
Score = 125 bits (63), Expect = 5e-026
Identities = 159/191 (83%)
Strand = Plus / Plus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| |||||||| ||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 99611 ctcctcattctccaccgtgtgagcaagtggcataatgatctggctcccagaaaatctcat 99670
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|| ||||||||||||||||| || | || ||||||| |||||||| |||| |||||
Sbjct: 99671 aggccgcaacccaggaagtgaacatgagcttgtcttcagagatgaagctgaatatgcatc 99730
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccgg 453
| || ||||| ||||||||||| | ||| ||||||| |||||| |||| ||||| ||
Sbjct: 99731 gaagttataatccgcccattcagaacgatgttccctcaaaaatcgaaccaaaactgcagg 99790
Query: 454 tgggacgctct 464
|||||| ||||
Sbjct: 99791 tgggacactct 99801
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct: 100815 cagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttctg 100874
Query: 816 gaacactccatgcct 830
|||||||||| ||||
Sbjct: 100875 gaacactccaagcct 100889
Score = 89.7 bits (45), Expect = 3e-015
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 100052 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 100111
Query: 635 tcatt 639
|||||
Sbjct: 100112 tcatt 100116
Score = 67.9 bits (34), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| ||||||||||| |||||||| || || || ||| |||||||||||||
Sbjct: 100982 cctcaagatccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgca 101041
Query: 888 ctaaatacccacttggaagcatctcagc 915
||| ||| || || ||||||||||||||
Sbjct: 101042 ctagatagccgctaggaagcatctcagc 101069
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 659 tgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccactt 718
|||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |||
Sbjct: 100219 tgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgctt 100278
Query: 719 gtttcttgagcaatttgtct 738
|| |||||||||||||||||
Sbjct: 100279 gtctcttgagcaatttgtct 100298
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 227 tcatcatgagtaagaggttgtccttcaaggcggacaacttc 267
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 99188 tcatcatgtgtaagtgcttgtccttcaagacggacaacttc 99228
>gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021807, whole
genome shotgun sequence
Length = 45064
Score = 127 bits (64), Expect = 1e-026
Identities = 121/140 (86%)
Strand = Plus / Plus
Query: 56 actgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatcc 115
||||||||||| || || ||||| ||||||||||| || || || || |||||||||||
Sbjct: 29591 actgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatca 29650
Query: 116 ggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctca 175
|| ||| ||||||| ||||||||| | |||||||||||| |||| |||| |||||||||
Sbjct: 29651 gggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctca 29710
Query: 176 tctattccagtgcaaagctg 195
||||||||||||||||||||
Sbjct: 29711 tctattccagtgcaaagctg 29730
Score = 125 bits (63), Expect = 5e-026
Identities = 159/191 (83%)
Strand = Plus / Plus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| |||||||| ||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 30328 ctcctcattctccaccgtgtgagcaagtggcataatgatctggctcccagaaaatctcat 30387
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|| ||||||||||||||||| || | || ||||||| |||||||| |||| |||||
Sbjct: 30388 aggccgcaacccaggaagtgaacatgagcttgtcttcagagatgaagctgaatatgcatc 30447
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccgg 453
| || ||||| ||||||||||| | ||| ||||||| |||||| |||| ||||| ||
Sbjct: 30448 gaagttataatccgcccattcagaacgatgttccctcaaaaatcgaaccaaaactgcagg 30507
Query: 454 tgggacgctct 464
|||||| ||||
Sbjct: 30508 tgggacactct 30518
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct: 31532 cagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttctg 31591
Query: 816 gaacactccatgcct 830
|||||||||| ||||
Sbjct: 31592 gaacactccaagcct 31606
Score = 89.7 bits (45), Expect = 3e-015
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 30769 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 30828
Query: 635 tcatt 639
|||||
Sbjct: 30829 tcatt 30833
Score = 67.9 bits (34), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| ||||||||||| |||||||| || || || ||| |||||||||||||
Sbjct: 31699 cctcaagatccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgca 31758
Query: 888 ctaaatacccacttggaagcatctcagc 915
||| ||| || || ||||||||||||||
Sbjct: 31759 ctagatagccgctaggaagcatctcagc 31786
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 659 tgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccactt 718
|||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |||
Sbjct: 30936 tgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgctt 30995
Query: 719 gtttcttgagcaatttgtct 738
|| |||||||||||||||||
Sbjct: 30996 gtctcttgagcaatttgtct 31015
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 227 tcatcatgagtaagaggttgtccttcaaggcggacaacttc 267
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 29905 tcatcatgtgtaagtgcttgtccttcaagacggacaacttc 29945
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 127 bits (64), Expect = 1e-026
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 56 actgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatcc 115
||||||||||| || || ||||| ||||||||||| || || || || |||||||||||
Sbjct: 4308188 actgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatca 4308129
Query: 116 ggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctca 175
|| ||| ||||||| ||||||||| | |||||||||||| |||| |||| |||||||||
Sbjct: 4308128 gggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctca 4308069
Query: 176 tctattccagtgcaaagctg 195
||||||||||||||||||||
Sbjct: 4308068 tctattccagtgcaaagctg 4308049
Score = 125 bits (63), Expect = 5e-026
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| |||||||| ||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 4307451 ctcctcattctccaccgtgtgagcaagtggcataatgatctggctcccagaaaatctcat 4307392
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|| ||||||||||||||||| || | || ||||||| |||||||| |||| |||||
Sbjct: 4307391 aggccgcaacccaggaagtgaacatgagcttgtcttcagagatgaagctgaatatgcatc 4307332
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccgg 453
| || ||||| ||||||||||| | ||| ||||||| |||||| |||| ||||| ||
Sbjct: 4307331 gaagttataatccgcccattcagaacgatgttccctcaaaaatcgaaccaaaactgcagg 4307272
Query: 454 tgggacgctct 464
|||||| ||||
Sbjct: 4307271 tgggacactct 4307261
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct: 4306247 cagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttctg 4306188
Query: 816 gaacactccatgcct 830
|||||||||| ||||
Sbjct: 4306187 gaacactccaagcct 4306173
Score = 89.7 bits (45), Expect = 3e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 4307010 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 4306951
Query: 635 tcatt 639
|||||
Sbjct: 4306950 tcatt 4306946
Score = 67.9 bits (34), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| ||||||||||| |||||||| || || || ||| |||||||||||||
Sbjct: 4306080 cctcaagatccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgca 4306021
Query: 888 ctaaatacccacttggaagcatctcagc 915
||| ||| || || ||||||||||||||
Sbjct: 4306020 ctagatagccgctaggaagcatctcagc 4305993
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 659 tgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccactt 718
|||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |||
Sbjct: 4306843 tgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgctt 4306784
Query: 719 gtttcttgagcaatttgtct 738
|| |||||||||||||||||
Sbjct: 4306783 gtctcttgagcaatttgtct 4306764
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 227 tcatcatgagtaagaggttgtccttcaaggcggacaacttc 267
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 4307874 tcatcatgtgtaagtgcttgtccttcaagacggacaacttc 4307834
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 127 bits (64), Expect = 1e-026
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 56 actgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatcc 115
||||||||||| || || ||||| ||||||||||| || || || || |||||||||||
Sbjct: 5521829 actgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatca 5521770
Query: 116 ggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctca 175
|| ||| ||||||| ||||||||| | |||||||||||| |||| |||| |||||||||
Sbjct: 5521769 gggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctca 5521710
Query: 176 tctattccagtgcaaagctg 195
||||||||||||||||||||
Sbjct: 5521709 tctattccagtgcaaagctg 5521690
Score = 125 bits (63), Expect = 5e-026
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| |||||||| ||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 5521092 ctcctcattctccaccgtgtgagcaagtggcataatgatctggctcccagaaaatctcat 5521033
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|| ||||||||||||||||| || | || ||||||| |||||||| |||| |||||
Sbjct: 5521032 aggccgcaacccaggaagtgaacatgagcttgtcttcagagatgaagctgaatatgcatc 5520973
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccgg 453
| || ||||| ||||||||||| | ||| ||||||| |||||| |||| ||||| ||
Sbjct: 5520972 gaagttataatccgcccattcagaacgatgttccctcaaaaatcgaaccaaaactgcagg 5520913
Query: 454 tgggacgctct 464
|||||| ||||
Sbjct: 5520912 tgggacactct 5520902
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct: 5519888 cagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttctg 5519829
Query: 816 gaacactccatgcct 830
|||||||||| ||||
Sbjct: 5519828 gaacactccaagcct 5519814
Score = 89.7 bits (45), Expect = 3e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 5520651 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 5520592
Query: 635 tcatt 639
|||||
Sbjct: 5520591 tcatt 5520587
Score = 67.9 bits (34), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| ||||||||||| |||||||| || || || ||| |||||||||||||
Sbjct: 5519721 cctcaagatccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgca 5519662
Query: 888 ctaaatacccacttggaagcatctcagc 915
||| ||| || || ||||||||||||||
Sbjct: 5519661 ctagatagccgctaggaagcatctcagc 5519634
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 659 tgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccactt 718
|||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |||
Sbjct: 5520484 tgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgctt 5520425
Query: 719 gtttcttgagcaatttgtct 738
|| |||||||||||||||||
Sbjct: 5520424 gtctcttgagcaatttgtct 5520405
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 227 tcatcatgagtaagaggttgtccttcaaggcggacaacttc 267
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 5521515 tcatcatgtgtaagtgcttgtccttcaagacggacaacttc 5521475
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 127 bits (64), Expect = 1e-026
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 56 actgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatcc 115
||||||||||| || || ||||| ||||||||||| || || || || |||||||||||
Sbjct: 16387623 actgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatca 16387564
Query: 116 ggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctca 175
|| ||| ||||||| ||||||||| | |||||||||||| |||| |||| |||||||||
Sbjct: 16387563 gggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctca 16387504
Query: 176 tctattccagtgcaaagctg 195
||||||||||||||||||||
Sbjct: 16387503 tctattccagtgcaaagctg 16387484
Score = 125 bits (63), Expect = 5e-026
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| |||||||| ||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 16386886 ctcctcattctccaccgtgtgagcaagtggcataatgatctggctcccagaaaatctcat 16386827
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|| ||||||||||||||||| || | || ||||||| |||||||| |||| |||||
Sbjct: 16386826 aggccgcaacccaggaagtgaacatgagcttgtcttcagagatgaagctgaatatgcatc 16386767
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccgg 453
| || ||||| ||||||||||| | ||| ||||||| |||||| |||| ||||| ||
Sbjct: 16386766 gaagttataatccgcccattcagaacgatgttccctcaaaaatcgaaccaaaactgcagg 16386707
Query: 454 tgggacgctct 464
|||||| ||||
Sbjct: 16386706 tgggacactct 16386696
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct: 16385682 cagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttctg 16385623
Query: 816 gaacactccatgcct 830
|||||||||| ||||
Sbjct: 16385622 gaacactccaagcct 16385608
Score = 89.7 bits (45), Expect = 3e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 16386445 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 16386386
Query: 635 tcatt 639
|||||
Sbjct: 16386385 tcatt 16386381
Score = 67.9 bits (34), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| ||||||||||| |||||||| || || || ||| |||||||||||||
Sbjct: 16385515 cctcaagatccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgca 16385456
Query: 888 ctaaatacccacttggaagcatctcagc 915
||| ||| || || ||||||||||||||
Sbjct: 16385455 ctagatagccgctaggaagcatctcagc 16385428
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 659 tgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccactt 718
|||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |||
Sbjct: 16386278 tgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgctt 16386219
Query: 719 gtttcttgagcaatttgtct 738
|| |||||||||||||||||
Sbjct: 16386218 gtctcttgagcaatttgtct 16386199
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 227 tcatcatgagtaagaggttgtccttcaaggcggacaacttc 267
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 16387309 tcatcatgtgtaagtgcttgtccttcaagacggacaacttc 16387269
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 127 bits (64), Expect = 1e-026
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 56 actgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatcc 115
||||||||||| || || ||||| ||||||||||| || || || || |||||||||||
Sbjct: 17575757 actgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatca 17575698
Query: 116 ggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctca 175
|| ||| ||||||| ||||||||| | |||||||||||| |||| |||| |||||||||
Sbjct: 17575697 gggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctca 17575638
Query: 176 tctattccagtgcaaagctg 195
||||||||||||||||||||
Sbjct: 17575637 tctattccagtgcaaagctg 17575618
Score = 125 bits (63), Expect = 5e-026
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| |||||||| ||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 17575020 ctcctcattctccaccgtgtgagcaagtggcataatgatctggctcccagaaaatctcat 17574961
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|| ||||||||||||||||| || | || ||||||| |||||||| |||| |||||
Sbjct: 17574960 aggccgcaacccaggaagtgaacatgagcttgtcttcagagatgaagctgaatatgcatc 17574901
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccgg 453
| || ||||| ||||||||||| | ||| ||||||| |||||| |||| ||||| ||
Sbjct: 17574900 gaagttataatccgcccattcagaacgatgttccctcaaaaatcgaaccaaaactgcagg 17574841
Query: 454 tgggacgctct 464
|||||| ||||
Sbjct: 17574840 tgggacactct 17574830
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct: 17573816 cagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttctg 17573757
Query: 816 gaacactccatgcct 830
|||||||||| ||||
Sbjct: 17573756 gaacactccaagcct 17573742
Score = 89.7 bits (45), Expect = 3e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 17574579 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 17574520
Query: 635 tcatt 639
|||||
Sbjct: 17574519 tcatt 17574515
Score = 67.9 bits (34), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| ||||||||||| |||||||| || || || ||| |||||||||||||
Sbjct: 17573649 cctcaagatccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgca 17573590
Query: 888 ctaaatacccacttggaagcatctcagc 915
||| ||| || || ||||||||||||||
Sbjct: 17573589 ctagatagccgctaggaagcatctcagc 17573562
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 659 tgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccactt 718
|||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |||
Sbjct: 17574412 tgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgctt 17574353
Query: 719 gtttcttgagcaatttgtct 738
|| |||||||||||||||||
Sbjct: 17574352 gtctcttgagcaatttgtct 17574333
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 227 tcatcatgagtaagaggttgtccttcaaggcggacaacttc 267
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 17575443 tcatcatgtgtaagtgcttgtccttcaagacggacaacttc 17575403
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 127 bits (64), Expect = 1e-026
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 56 actgttttcatatcaagtggtatgacacgaaagccagaggaaatcaatggagcatcatcc 115
||||||||||| || || ||||| ||||||||||| || || || || |||||||||||
Sbjct: 17584797 actgttttcatgtccagcggtataacacgaaagcctgaagatattaacggagcatcatca 17584738
Query: 116 ggaaaatgctcatcaattggtgcaaacacaagctggaaggaggaacccacagatttctca 175
|| ||| ||||||| ||||||||| | |||||||||||| |||| |||| |||||||||
Sbjct: 17584737 gggaaaagctcatcgattggtgcagagacaagctggaagcaggatcccattgatttctca 17584678
Query: 176 tctattccagtgcaaagctg 195
||||||||||||||||||||
Sbjct: 17584677 tctattccagtgcaaagctg 17584658
Score = 125 bits (63), Expect = 5e-026
Identities = 159/191 (83%)
Strand = Plus / Minus
Query: 274 ctcctcgttctccactgtgtgagcaagtggcatgatcatctgccccccagaaaatctcat 333
|||||| |||||||| ||||||||||||||||| || ||||| | |||||||||||||||
Sbjct: 17584060 ctcctcattctccaccgtgtgagcaagtggcataatgatctggctcccagaaaatctcat 17584001
Query: 334 gggtcgcaacccaggaagtgagcacgcactggtcttcaatgatgaagccaaatacgcatc 393
|| ||||||||||||||||| || | || ||||||| |||||||| |||| |||||
Sbjct: 17584000 aggccgcaacccaggaagtgaacatgagcttgtcttcagagatgaagctgaatatgcatc 17583941
Query: 394 aatattgtaatcagcccattcagatctatgctccctcagaaatcgtaccagtactgccgg 453
| || ||||| ||||||||||| | ||| ||||||| |||||| |||| ||||| ||
Sbjct: 17583940 gaagttataatccgcccattcagaacgatgttccctcaaaaatcgaaccaaaactgcagg 17583881
Query: 454 tgggacgctct 464
|||||| ||||
Sbjct: 17583880 tgggacactct 17583870
Score = 93.7 bits (47), Expect = 2e-016
Identities = 68/75 (90%)
Strand = Plus / Minus
Query: 756 cagtagtcattttctgagcaactactctagaagactcatatagtggtcgaagcacttcag 815
||||||||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |
Sbjct: 17582856 cagtagtcattttctgagcaactaccctagatgactcgtagagtggccgaagcacttctg 17582797
Query: 816 gaacactccatgcct 830
|||||||||| ||||
Sbjct: 17582796 gaacactccaagcct 17582782
Score = 89.7 bits (45), Expect = 3e-015
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 575 tcttcaatgccatctccccccattacagaccaaccatcatcattgaaaccactaatggca 634
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| || |||
Sbjct: 17583619 tcttcaatgccatccccacccatgacagaccaaccatcatcattgaaaccacttatagca 17583560
Query: 635 tcatt 639
|||||
Sbjct: 17583559 tcatt 17583555
Score = 67.9 bits (34), Expect = 9e-009
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 828 cctcgagatctagatggtccactatatgcacaatcgaacctnnaccttcgcatgggcgca 887
|||| ||||| ||||||||||| |||||||| || || || ||| |||||||||||||
Sbjct: 17582689 cctcaagatccagatggtccacaatatgcacgatggagccaccaccctcgcatgggcgca 17582630
Query: 888 ctaaatacccacttggaagcatctcagc 915
||| ||| || || ||||||||||||||
Sbjct: 17582629 ctagatagccgctaggaagcatctcagc 17582602
Score = 56.0 bits (28), Expect = 4e-005
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 659 tgactaaaggtccgtagaactgcaggttgccttcccaaggcatacactacttctccactt 718
|||||||| ||||| | ||| ||||||||||| ||||| || || || || || || |||
Sbjct: 17583452 tgactaaatgtccgcaaaacagcaggttgcctccccaaagcgtatacaacctccccgctt 17583393
Query: 719 gtttcttgagcaatttgtct 738
|| |||||||||||||||||
Sbjct: 17583392 gtctcttgagcaatttgtct 17583373
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 227 tcatcatgagtaagaggttgtccttcaaggcggacaacttc 267
|||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 17584483 tcatcatgtgtaagtgcttgtccttcaagacggacaacttc 17584443
>gb|AQ446450.2|AQ446450 nbxb0069H22r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0069H22r, DNA sequence
Length = 897
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 304 atcagcccattcagaacgatgctccctcagaaatcg 269
>dbj|AK102183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086M14, full
insert sequence
Length = 3140
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 1769 atcagcccattcagaacgatgctccctcagaaatcg 1734
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161806
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 154921 atcagcccattcagaacgatgctccctcagaaatcg 154886
>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of
library Monsanto from chromosome 12 of cultivar Nipponbare
of ssp. japonica of Oryza sativa (rice), complete sequence
Length = 61296
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 18541 atcagcccattcagaacgatgctccctcagaaatcg 18506
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 2128346 atcagcccattcagaacgatgctccctcagaaatcg 2128381
>gb|AACV01025516.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025516, whole
genome shotgun sequence
Length = 38783
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 22604 atcagcccattcagaacgatgctccctcagaaatcg 22569
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 2979063 atcagcccattcagaacgatgctccctcagaaatcg 2979098
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 22162709 atcagcccattcagaacgatgctccctcagaaatcg 22162744
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 25956748 atcagcccattcagaacgatgctccctcagaaatcg 25956783
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 56.0 bits (28), Expect = 4e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 403 atcagcccattcagatctatgctccctcagaaatcg 438
||||||||||||||| | ||||||||||||||||||
Sbjct: 25884926 atcagcccattcagaacgatgctccctcagaaatcg 25884961
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,300,486
Number of Sequences: 438736
Number of extensions: 1300486
Number of successful extensions: 6150
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5816
Number of HSP's gapped (non-prelim): 313
length of query: 940
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 919
effective length of database: 2,791,206,460
effective search space: 2565118736740
effective search space used: 2565118736740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)