BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750995.2.1
(729 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK099096.1| Oryza sativa (japonica cultivar-group) cDNA... 561 e-157
dbj|AK103919.1| Oryza sativa (japonica cultivar-group) cDNA... 561 e-157
emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC O... 561 e-157
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 561 e-157
gb|AACV01024705.1| Oryza sativa (japonica cultivar-group) c... 561 e-157
gb|CH401275.1| Oryza sativa (japonica cultivar-group) chrom... 561 e-157
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 561 e-157
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 561 e-157
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 561 e-157
gb|AQ865593.1|AQ865593 nbeb0025N07f CUGI Rice BAC Library (... 553 e-155
dbj|AK104003.1| Oryza sativa (japonica cultivar-group) cDNA... 553 e-155
dbj|AK105768.1| Oryza sativa (japonica cultivar-group) cDNA... 553 e-155
gb|C71864.1|C71864 C71864 Rice panicle at flowering stage O... 476 e-132
gb|AU096914.1|AU096914 AU096914 Rice green shoot Oryza sati... 387 e-105
gb|AC079887.17| Oryza sativa (japonica cultivar-group) chro... 387 e-105
gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) c... 387 e-105
ref|XM_469834.1| Oryza sativa (japonica cultivar-group), mRNA 387 e-105
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 387 e-105
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 387 e-105
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 387 e-105
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 387 e-105
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 387 e-105
dbj|AK098880.1| Oryza sativa (japonica cultivar-group) cDNA... 379 e-102
gb|CF276273.1|CF276273 14ETL--01-F21.b1 Rice etiolated leaf... 371 e-100
gb|AU161844.1|AU161844 AU161844 Rice shoot Oryza sativa (ja... 363 9e-098
gb|CF332317.1|CF332317 NACL--08-M12.b1 Rice callus plasmid ... 339 1e-090
gb|AU070753.1|AU070753 AU070753 Rice cDNA from young root O... 311 3e-082
gb|AU031349.1|AU031349 AU031349 Rice cDNA from immature lea... 309 1e-081
gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 ... 307 4e-081
gb|AACV01006953.1| Oryza sativa (japonica cultivar-group) c... 307 4e-081
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 307 4e-081
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 307 4e-081
ref|XM_468764.1| Oryza sativa (japonica cultivar-group), mRNA 301 3e-079
gb|CF589243.1|CF589243 EST00G12 Subtracted cDNA library of ... 281 3e-073
gb|AU164816.1|AU164816 AU164816 Rice cDNA from immature lea... 268 4e-069
gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 ... 252 2e-064
gb|AACV01007276.1| Oryza sativa (japonica cultivar-group) c... 252 2e-064
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 252 2e-064
gb|AU164298.1|AU164298 AU164298 Rice panicle shorter than 3... 248 4e-063
gb|AU161843.2|AU161843 AU161843 Rice shoot Oryza sativa (ja... 228 3e-057
gb|AU184249.1|AU184249 AU184249 Rice root Oryza sativa (jap... 208 3e-051
gb|CF296283.1|CF296283 30DGS--06-J07.g1 Rice leaf plasmid c... 204 5e-050
gb|C99482.1|C99482 C99482 Rice panicle (longer than 10cm) O... 174 4e-041
gb|D39326.1|D39326 RICR3339A Rice root Oryza sativa (japoni... 157 1e-035
gb|AU197416.1|AU197416 AU197416 Rice cDNA from young root O... 157 1e-035
gb|CA997851.1|CA997851 S234B1_D07 Rice cold stress germinat... 141 6e-031
gb|C74313.1|C74313 C74313 Rice panicle shorter than 3cm Ory... 121 6e-025
gb|D49288.1|D49288 RICS16488A Rice green shoot Oryza sativa... 94 1e-016
gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, N... 66 3e-008
gb|AACV01005868.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
ref|XM_470220.1| Oryza sativa (japonica cultivar-group), p... 66 3e-008
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 66 3e-008
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|AU070454.1|AU070454 AU070454 Rice green shoot Oryza sati... 60 2e-006
dbj|AK101692.1| Oryza sativa (japonica cultivar-group) cDNA... 58 7e-006
gb|AACV01010375.1| Oryza sativa (japonica cultivar-group) c... 58 7e-006
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 58 7e-006
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromoso... 58 7e-006
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 58 7e-006
gb|AACV01003526.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 54 1e-004
dbj|AP004046.2| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
dbj|AP005849.3| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 54 1e-004
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 54 1e-004
ref|XM_473644.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
dbj|AP003819.1| Oryza sativa (japonica cultivar-group) chro... 46 0.026
dbj|AP005764.5| Oryza sativa (japonica cultivar-group) geno... 46 0.026
gb|AACV01015503.1| Oryza sativa (japonica cultivar-group) c... 46 0.026
ref|XM_477165.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.026
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 46 0.026
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.026
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.026
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 46 0.026
gb|CV721999.1|CV721999 YBH--06-A16.b1 Rice before heading y... 42 0.41
dbj|AP004820.1| Oryza sativa (japonica cultivar-group) chro... 42 0.41
dbj|AB024337.1| Oryza sativa (japonica cultivar-group) mRNA... 42 0.41
dbj|AB073546.1| Oryza sativa (japonica cultivar-group) OsCR... 42 0.41
dbj|AK064910.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.41
gb|AACV01004744.1| Oryza sativa (japonica cultivar-group) c... 42 0.41
ref|XM_466372.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.41
dbj|AP005699.3| Oryza sativa (japonica cultivar-group) geno... 42 0.41
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.41
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.41
>dbj|AK099096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023C02, full
insert sequence
Length = 1824
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 233 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 292
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 293 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 352
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 353 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 412
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 413 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 472
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 473 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 532
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 533 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 592
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 593 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 652
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 653 atcttgacccacaacagcaagggcatcaactaccagatcct 693
>dbj|AK103919.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A09, full
insert sequence
Length = 1774
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 104 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 163
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 164 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 223
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 224 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 283
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 284 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 343
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 344 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 403
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 404 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 463
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 464 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 523
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 524 atcttgacccacaacagcaagggcatcaactaccagatcct 564
>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 174521
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Minus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 142978 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 142919
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 142918 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 142859
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 142858 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 142799
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 142798 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 142739
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 142738 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 142679
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 142678 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 142619
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 142618 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 142559
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 142558 atcttgacccacaacagcaagggcatcaactaccagatcct 142518
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Minus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 148854 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 148795
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 148794 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 148735
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 148734 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 148675
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 148674 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 148615
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 148614 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 148555
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 148554 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 148495
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 148494 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 148435
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 148434 atcttgacccacaacagcaagggcatcaactaccagatcct 148394
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 1254531 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 1254590
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 1254591 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 1254650
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 1254651 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 1254710
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 1254711 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 1254770
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 1254771 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 1254830
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 1254831 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 1254890
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 1254891 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 1254950
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 1254951 atcttgacccacaacagcaagggcatcaactaccagatcct 1254991
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 1248655 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 1248714
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 1248715 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 1248774
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 1248775 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 1248834
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 1248835 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 1248894
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1248895 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 1248954
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 1248955 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 1249014
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 1249015 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 1249074
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 1249075 atcttgacccacaacagcaagggcatcaactaccagatcct 1249115
>gb|AACV01024705.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024705, whole
genome shotgun sequence
Length = 64049
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 42286 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 42345
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 42346 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 42405
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 42406 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 42465
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 42466 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 42525
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 42526 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 42585
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 42586 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 42645
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 42646 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 42705
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 42706 atcttgacccacaacagcaagggcatcaactaccagatcct 42746
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 36410 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 36469
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 36470 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 36529
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 36530 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 36589
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 36590 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 36649
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 36650 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 36709
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 36710 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 36769
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 36770 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 36829
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 36830 atcttgacccacaacagcaagggcatcaactaccagatcct 36870
>gb|CH401275.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000112
genomic scaffold, whole genome shotgun sequence
Length = 845600
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 393471 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 393530
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 393531 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 393590
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 393591 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 393650
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 393651 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 393710
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 393711 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 393770
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 393771 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 393830
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 393831 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 393890
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 393891 atcttgacccacaacagcaagggcatcaactaccagatcct 393931
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 387595 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 387654
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 387655 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 387714
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 387715 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 387774
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 387775 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 387834
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 387835 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 387894
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 387895 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 387954
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 387955 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 388014
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 388015 atcttgacccacaacagcaagggcatcaactaccagatcct 388055
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 12426530 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 12426589
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 12426590 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 12426649
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 12426650 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 12426709
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 12426710 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 12426769
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 12426770 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 12426829
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 12426830 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 12426889
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 12426890 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 12426949
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 12426950 atcttgacccacaacagcaagggcatcaactaccagatcct 12426990
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 12420654 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 12420713
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 12420714 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 12420773
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 12420774 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 12420833
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 12420834 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 12420893
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 12420894 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 12420953
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 12420954 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 12421013
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 12421014 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 12421073
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 12421074 atcttgacccacaacagcaagggcatcaactaccagatcct 12421114
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 14938869 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 14938928
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 14938929 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 14938988
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 14938989 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 14939048
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 14939049 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 14939108
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 14939109 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 14939168
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 14939169 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 14939228
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 14939229 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 14939288
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 14939289 atcttgacccacaacagcaagggcatcaactaccagatcct 14939329
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 14932993 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 14933052
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 14933053 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 14933112
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 14933113 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 14933172
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 14933173 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 14933232
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 14933233 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 14933292
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 14933293 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 14933352
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 14933353 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 14933412
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 14933413 atcttgacccacaacagcaagggcatcaactaccagatcct 14933453
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 561 bits (283), Expect = e-157
Identities = 416/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 14893152 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 14893211
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 14893212 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 14893271
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 14893272 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 14893331
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 14893332 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 14893391
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 14893392 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 14893451
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 14893452 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 14893511
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 14893512 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggccattgagaag 14893571
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 14893572 atcttgacccacaacagcaagggcatcaactaccagatcct 14893612
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 14887276 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 14887335
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 14887336 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 14887395
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 14887396 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 14887455
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 14887456 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 14887515
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 14887516 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 14887575
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 14887576 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 14887635
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 14887636 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 14887695
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 14887696 atcttgacccacaacagcaagggcatcaactaccagatcct 14887736
>gb|AQ865593.1|AQ865593 nbeb0025N07f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0025N07f, DNA sequence
Length = 797
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Minus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 502 aagatggtgaagatctgctgcatcggagctggatatgtcggcggcccaaccatggctgtc 443
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| |||||||| || |||||||||||||||||||| ||| ||
Sbjct: 442 attgccctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgtt 383
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||
Sbjct: 382 gatgcctggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaag 323
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| |||||||||||||||||||||||||| || || || |||||||| |||||||||||
Sbjct: 322 gaatgcaggggcaggaacctcttcttcagtacggacgtcgagaagcatgtcgctgaggca 263
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||| || || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct: 262 gacatcatttttgtgtctgtcaacacccctaccaagacccgtggacttggagcaggcaag 203
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||
Sbjct: 202 gctgctgacctcacctactgggagagtgctgctcggatgattgctgatgtctccaagtct 143
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct: 142 gacaagatcgttgttgagaagtccactgtccctgtcaagaccgcagaggacattgagaag 83
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 82 atcttgacccacaacagcaagggcatcaactaccagatcct 42
>dbj|AK104003.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H11, full
insert sequence
Length = 1852
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 118 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 177
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 178 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 237
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 238 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 297
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 298 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 357
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 358 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 417
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 418 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 477
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 478 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 537
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 538 atcttgacccacaacagcaagggcatcaactaccagatcct 578
>dbj|AK105768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-E05, full
insert sequence
Length = 1865
Score = 553 bits (279), Expect = e-155
Identities = 415/461 (90%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||
Sbjct: 118 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtc 177
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 178 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 237
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 238 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 297
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 298 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 357
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 358 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 417
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 418 gctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 477
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 478 gacaagatcgttgttgagaagtccactgtccctgtcaagactgcagaggccattgagaag 537
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||| |||||||||||||||||||||||||||
Sbjct: 538 atcttgacccacaacagcaagggcatcaactaccagatcct 578
>gb|C71864.1|C71864 C71864 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0489_1A, mRNA sequence
Length = 447
Score = 476 bits (240), Expect = e-132
Identities = 378/425 (88%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct: 23 aagatggtgaagatctgctgcattggagctggctatgtcggcggcccaaccatggccgtn 82
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
||||||||||| ||||||| || ||||| || ||||||||||| |||||||| ||||||
Sbjct: 83 attgccctcaaatgcccagcaatcgaggtggtggttgttgacatttccaagcctcgcatt 142
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||
Sbjct: 143 gatgcctggaacagcgaacagctcccgatctacgagcctggcctcgatgaggtcgtgaag 202
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 203 gagtgcagaggcaggaacctcttcttcagcactgatgtggagaagcatgtcgccgaggcg 262
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||| || || || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 263 aacatcatctttgtatctgtcaacacccccaccaagacccgtggtcttggagcaggcaag 322
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
||||| ||||||| ||||||||| || |||||||| ||||| || |||||||||||||||
Sbjct: 323 gctgctgacctcanctactgggaaagtgctgctcggatgattgctgatgtctccaagtct 382
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||||||||||| ||||||||||| |||||||||||||| | ||||| |||||||||
Sbjct: 383 gacaagatcgttgttgagaagtccactgtccctgtcaagactncagaggccattgagaag 442
Query: 618 atctt 622
|||||
Sbjct: 443 atctt 447
>gb|AU096914.1|AU096914 AU096914 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S16488, mRNA sequence
Length = 631
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 100 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 159
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 160 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 219
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 220 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 279
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 280 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 339
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 340 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 399
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 400 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 459
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 460 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 519
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 520 atcctgacgcacaacagcaagggcatcaactaccagatcct 560
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
genomic sequence, complete sequence
Length = 168759
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Minus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 83453 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 83394
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 83393 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 83334
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 83333 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 83274
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 83273 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 83214
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 83213 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 83154
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 83153 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 83094
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 83093 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 83034
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 83033 atcctgacgcacaacagcaagggcatcaactaccagatcct 82993
>gb|AACV01007956.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007956, whole
genome shotgun sequence
Length = 44568
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 34752 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 34811
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 34812 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 34871
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 34872 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 34931
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 34932 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 34991
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 34992 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 35051
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 35052 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 35111
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 35112 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 35171
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 35172 atcctgacgcacaacagcaagggcatcaactaccagatcct 35212
>ref|XM_469834.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2058
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 205 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 264
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 265 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 324
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 325 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 384
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 385 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 444
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 445 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 504
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 505 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 564
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 565 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 624
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 625 atcctgacgcacaacagcaagggcatcaactaccagatcct 665
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 192018 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 192077
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 192078 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 192137
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 192138 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 192197
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 192198 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 192257
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 192258 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 192317
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 192318 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 192377
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 192378 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 192437
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 192438 atcctgacgcacaacagcaagggcatcaactaccagatcct 192478
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 4657302 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 4657361
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 4657362 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 4657421
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 4657422 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 4657481
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 4657482 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 4657541
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 4657542 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 4657601
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 4657602 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 4657661
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 4657662 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 4657721
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 4657722 atcctgacgcacaacagcaagggcatcaactaccagatcct 4657762
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 31923465 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 31923524
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 31923525 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 31923584
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 31923585 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 31923644
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 31923645 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 31923704
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 31923705 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 31923764
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 31923765 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 31923824
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 31923825 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 31923884
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 31923885 atcctgacgcacaacagcaagggcatcaactaccagatcct 31923925
Score = 307 bits (155), Expect = 4e-081
Identities = 356/423 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct: 18391566 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 18391625
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| ||| | ||||| ||||| || ||||||||| |||||||
Sbjct: 18391626 atcgccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatc 18391685
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| | ||||||||||||||||| |||||||| || || |||
Sbjct: 18391686 gacgcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgc 18391745
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| ||| | || ||||||||||||||||||| || || |||| |||||||| |||||
Sbjct: 18391746 cgctgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggcc 18391805
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||| |||||||||| |||||||||||||||||| |||| || || || || ||||||
Sbjct: 18391806 gacatcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaag 18391865
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || || |||||||||| || | | |||
Sbjct: 18391866 gccgccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtcc 18391925
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 18391926 gacaaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaag 18391985
Query: 618 atc 620
|||
Sbjct: 18391986 atc 18391988
Score = 252 bits (127), Expect = 2e-064
Identities = 362/441 (82%)
Strand = Plus / Minus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| || || || || || ||||| || ||||| || ||
Sbjct: 23089218 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 23089159
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|| ||||||||||| ||| | ||||| || || || |||||||| ||| || || |||
Sbjct: 23089158 gcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgag 23089099
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
| ||||||||||| |||||| ||||||||||||||||| || ||||| || | ||||
Sbjct: 23089098 gggtggaacagcgagcgcctccccatctacgagcccggcctggacgatgtcgtcaggcag 23089039
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | ||| | ||||||||||||||||| || || ||| |||||||| || || | |
Sbjct: 23089038 tgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggc 23088979
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| || |||||||||||||||||||| || || || || || |||||
Sbjct: 23088978 atcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggcc 23088919
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || || |||||||| |||||| || |||
Sbjct: 23088918 gccgacctcacctactgggagagcgccgcccgcatcatcgccgacgtctcccgctccgac 23088859
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 23088858 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgccgaggccatcgagaagatc 23088799
Query: 621 ttgacccacnncagcaagggc 641
| ||||| ||||||||||
Sbjct: 23088798 ctcgcccacaacagcaagggc 23088778
Score = 65.9 bits (33), Expect = 3e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 560 caagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagat 619
|||| |||| |||||||||||||||||||| |||||||| || ||||| || ||||||||
Sbjct: 2814464 caaggtcgtcgtcgagaagtccaccgtccccgtcaagacggccgaggccatagagaagat 2814405
Query: 620 c 620
|
Sbjct: 2814404 c 2814404
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 492 ggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccga 544
|||||||| ||||||||| |||||||||||||||| || | |||||||||||
Sbjct: 2814532 ggcaaggccgccgacctcgcctactgggagagcgcggcgaggatgatcgccga 2814480
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 31103134 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 31103193
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 31103194 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 31103253
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 31103254 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 31103313
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 31103314 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 31103373
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 31103374 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 31103433
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 31103434 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 31103493
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 31103494 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 31103553
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 31103554 atcctgacgcacaacagcaagggcatcaactaccagatcct 31103594
Score = 307 bits (155), Expect = 4e-081
Identities = 356/423 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct: 17580080 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 17580139
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| ||| | ||||| ||||| || ||||||||| |||||||
Sbjct: 17580140 atcgccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatc 17580199
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| | ||||||||||||||||| |||||||| || || |||
Sbjct: 17580200 gacgcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgc 17580259
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| ||| | || ||||||||||||||||||| || || |||| |||||||| |||||
Sbjct: 17580260 cgctgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggcc 17580319
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||| |||||||||| |||||||||||||||||| |||| || || || || ||||||
Sbjct: 17580320 gacatcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaag 17580379
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || || |||||||||| || | | |||
Sbjct: 17580380 gccgccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtcc 17580439
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 17580440 gacaaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaag 17580499
Query: 618 atc 620
|||
Sbjct: 17580500 atc 17580502
Score = 252 bits (127), Expect = 2e-064
Identities = 362/441 (82%)
Strand = Plus / Minus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| || || || || || ||||| || ||||| || ||
Sbjct: 22443975 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 22443916
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|| ||||||||||| ||| | ||||| || || || |||||||| ||| || || |||
Sbjct: 22443915 gcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgag 22443856
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
| ||||||||||| |||||| ||||||||||||||||| || ||||| || | ||||
Sbjct: 22443855 gggtggaacagcgagcgcctccccatctacgagcccggcctggacgatgtcgtcaggcag 22443796
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | ||| | ||||||||||||||||| || || ||| |||||||| || || | |
Sbjct: 22443795 tgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggc 22443736
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| || |||||||||||||||||||| || || || || || |||||
Sbjct: 22443735 atcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggcc 22443676
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || || |||||||| |||||| || |||
Sbjct: 22443675 gccgacctcacctactgggagagcgccgcccgcatcatcgccgacgtctcccgctccgac 22443616
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 22443615 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgccgaggccatcgagaagatc 22443556
Query: 621 ttgacccacnncagcaagggc 641
| ||||| ||||||||||
Sbjct: 22443555 ctcgcccacaacagcaagggc 22443535
Score = 65.9 bits (33), Expect = 3e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 560 caagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagat 619
|||| |||| |||||||||||||||||||| |||||||| || ||||| || ||||||||
Sbjct: 2610102 caaggtcgtcgtcgagaagtccaccgtccccgtcaagacggccgaggccatagagaagat 2610043
Query: 620 c 620
|
Sbjct: 2610042 c 2610042
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 492 ggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccga 544
|||||||| ||||||||| |||||||||||||||| || | |||||||||||
Sbjct: 2610170 ggcaaggccgccgacctcgcctactgggagagcgcggcgaggatgatcgccga 2610118
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 387 bits (195), Expect = e-105
Identities = 394/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 31012611 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 31012670
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 31012671 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 31012730
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 31012731 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 31012790
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 31012791 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 31012850
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 31012851 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 31012910
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 31012911 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 31012970
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 31012971 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 31013030
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 31013031 atcctgacgcacaacagcaagggcatcaactaccagatcct 31013071
Score = 307 bits (155), Expect = 4e-081
Identities = 356/423 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct: 17586539 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 17586598
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| ||| | ||||| ||||| || ||||||||| |||||||
Sbjct: 17586599 atcgccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatc 17586658
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| | ||||||||||||||||| |||||||| || || |||
Sbjct: 17586659 gacgcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgc 17586718
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| ||| | || ||||||||||||||||||| || || |||| |||||||| |||||
Sbjct: 17586719 cgctgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggcc 17586778
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||| |||||||||| |||||||||||||||||| |||| || || || || ||||||
Sbjct: 17586779 gacatcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaag 17586838
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || || |||||||||| || | | |||
Sbjct: 17586839 gccgccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtcc 17586898
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 17586899 gacaaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaag 17586958
Query: 618 atc 620
|||
Sbjct: 17586959 atc 17586961
Score = 252 bits (127), Expect = 2e-064
Identities = 362/441 (82%)
Strand = Plus / Minus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| || || || || || ||||| || ||||| || ||
Sbjct: 22450946 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 22450887
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|| ||||||||||| ||| | ||||| || || || |||||||| ||| || || |||
Sbjct: 22450886 gcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgag 22450827
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
| ||||||||||| |||||| ||||||||||||||||| || ||||| || | ||||
Sbjct: 22450826 gggtggaacagcgagcgcctccccatctacgagcccggcctggacgatgtcgtcaggcag 22450767
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | ||| | ||||||||||||||||| || || ||| |||||||| || || | |
Sbjct: 22450766 tgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggc 22450707
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| || |||||||||||||||||||| || || || || || |||||
Sbjct: 22450706 atcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggcc 22450647
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || || |||||||| |||||| || |||
Sbjct: 22450646 gccgacctcacctactgggagagcgccgcccgcatcatcgccgacgtctcccgctccgac 22450587
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 22450586 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgccgaggccatcgagaagatc 22450527
Query: 621 ttgacccacnncagcaagggc 641
| ||||| ||||||||||
Sbjct: 22450526 ctcgcccacaacagcaagggc 22450506
Score = 65.9 bits (33), Expect = 3e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 560 caagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagat 619
|||| |||| |||||||||||||||||||| |||||||| || ||||| || ||||||||
Sbjct: 2609992 caaggtcgtcgtcgagaagtccaccgtccccgtcaagacggccgaggccatagagaagat 2609933
Query: 620 c 620
|
Sbjct: 2609932 c 2609932
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 492 ggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccga 544
|||||||| ||||||||| |||||||||||||||| || | |||||||||||
Sbjct: 2610060 ggcaaggccgccgacctcgcctactgggagagcgcggcgaggatgatcgccga 2610008
>dbj|AK098880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F12, full
insert sequence
Length = 1946
Score = 379 bits (191), Expect = e-102
Identities = 393/461 (85%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 110 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 169
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 170 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 229
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 230 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 289
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 290 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 349
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 350 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 409
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | |||||| |||| || ||||||||
Sbjct: 410 gcggccgacctcacctactgggagagcgcggcgaggatgatctccgacgtgtccaagtcc 469
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 470 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 529
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 530 atcctgacgcacaacagcaagggcatcaactaccagatcct 570
>gb|CF276273.1|CF276273 14ETL--01-F21.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-F21, mRNA sequence
Length = 572
Score = 371 bits (187), Expect = e-100
Identities = 393/461 (85%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 112 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 171
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||| ||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 172 atcgccctcaagt-cccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 230
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 231 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 290
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 291 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 350
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 351 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 410
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 411 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 470
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 471 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 530
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 531 atcctgacgcacaacagcaagggcatcaactaccagatcct 571
>gb|AU161844.1|AU161844 AU161844 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6101, mRNA sequence
Length = 534
Score = 363 bits (183), Expect = 9e-098
Identities = 392/461 (85%), Gaps = 1/461 (0%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 4 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 63
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| ||| |||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 64 atcgccttcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 123
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 124 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 183
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 184 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 243
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 244 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 303
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 304 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 363
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||| ||| || |||||||| || ||||| || ||||||
Sbjct: 364 gacaagatcgtcgtcgagaagtcca-cgtgccggtcaagacggccgaggcgatcgagaag 422
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 423 atcctgacgcacaacagcaagggcatcaactaccagatcct 463
>gb|CF332317.1|CF332317 NACL--08-M12.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-M12, mRNA sequence
Length = 617
Score = 339 bits (171), Expect = 1e-090
Identities = 390/461 (84%), Gaps = 2/461 (0%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| |
Sbjct: 139 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggg- 197
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 198 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 257
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 258 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 317
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||| ||| || || |||||||||||||| |||||
Sbjct: 318 gagtgcaggggcaggaacctcttcttca-cacggacgtcgagaagcacgtcgcggaggcg 376
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||| ||| || |||||||| || || || || || ||||||
Sbjct: 377 gacatcatcttcgtgtccgtgagcacgccgaccaagacgcgcggcctcggcgccggcaag 436
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| ||| |||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 437 gcggccaacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 496
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
||||||||||| ||||||||||||||||| || |||||||| || ||||| || ||||||
Sbjct: 497 gacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaag 556
Query: 618 atcttgacccacnncagcaagggcatcaactaccagatcct 658
||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 557 atcctgacgcacaacagcaagggcatcaactaccagatcct 597
>gb|AU070753.1|AU070753 AU070753 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10192_2A, mRNA sequence
Length = 427
Score = 311 bits (157), Expect = 3e-082
Identities = 299/347 (86%)
Strand = Plus / Minus
Query: 312 cgcattgaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgtt 371
||||| || |||||||||||||| || |||||||||||||| || ||||| || ||
Sbjct: 424 cgcatcgacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtg 365
Query: 372 gtgaagcagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgct 431
|| ||| ||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct: 364 gtcaaggagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcg 305
Query: 432 gaggctgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagct 491
||||| |||||||||||||| || |||||||| || |||||||| || || || || ||
Sbjct: 304 gaggcggacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgcc 245
Query: 492 ggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctcc 551
|||||||| |||||||||||||||||||||||||| || | ||||||||||| || |||
Sbjct: 244 ggcaaggcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtcc 185
Query: 552 aagtctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctatt 611
||||| ||||||||||| ||||||||||||||||| || |||||||| || ||||| ||
Sbjct: 184 aagtccgacaagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatc 125
Query: 612 gagaagatcttgacccacnncagcaagggcatcaactaccagatcct 658
||||||||| |||| ||| |||||||||||||||||||||||||||
Sbjct: 124 gagaagatcctgacgcacaacagcaagggcatcaactaccagatcct 78
>gb|AU031349.1|AU031349 AU031349 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61383_1A, mRNA sequence
Length = 694
Score = 309 bits (156), Expect = 1e-081
Identities = 390/464 (84%), Gaps = 4/464 (0%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 212 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 271
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 272 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 331
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 332 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 391
Query: 378 cagtg-caggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggc 436
|||| ||||||||||||||||||||||||||| || || |||||||||||||| || ||
Sbjct: 392 gagtggcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaagc 451
Query: 437 tgacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaa 496
|||||||||||||| || |||||||| || |||||||| || || || || || |||||
Sbjct: 452 ggacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaa 511
Query: 497 ggctgccgacctcacctactgggag-agcgctgctcgtatgatcgccgatgtctccaagt 555
||| ||||||||||||||||||||| ||||| || | ||||||||||| || |||||||
Sbjct: 512 ggcggccgacctcacctactgggagaagcgcggcgaggatgatcgccgacgtgtccaagt 571
Query: 556 ctgacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgag- 614
| ||||||||||| ||||||||||||||||| || ||||||| || || || || |||
Sbjct: 572 ccgacaagatcgtcgtcgagaagtccaccgtgccggtcaagaaggccgangcgatcgaga 631
Query: 615 aagatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||| |||| ||| |||||| ||||||||||||||||||||
Sbjct: 632 aagatc-tgacgcacaacagcaanggcatcaactaccagatcct 674
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete
sequence
Length = 97152
Score = 307 bits (155), Expect = 4e-081
Identities = 356/423 (84%)
Strand = Plus / Minus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct: 68538 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 68479
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| ||| | ||||| ||||| || ||||||||| |||||||
Sbjct: 68478 atcgccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatc 68419
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| | ||||||||||||||||| |||||||| || || |||
Sbjct: 68418 gacgcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgc 68359
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| ||| | || ||||||||||||||||||| || || |||| |||||||| |||||
Sbjct: 68358 cgctgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggcc 68299
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||| |||||||||| |||||||||||||||||| |||| || || || || ||||||
Sbjct: 68298 gacatcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaag 68239
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || || |||||||||| || | | |||
Sbjct: 68238 gccgccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtcc 68179
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 68178 gacaaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaag 68119
Query: 618 atc 620
|||
Sbjct: 68118 atc 68116
>gb|AACV01006953.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006953,
whole genome shotgun sequence
Length = 3901
Score = 307 bits (155), Expect = 4e-081
Identities = 356/423 (84%)
Strand = Plus / Minus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct: 554 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 495
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| ||| | ||||| ||||| || ||||||||| |||||||
Sbjct: 494 atcgccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatc 435
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| | ||||||||||||||||| |||||||| || || |||
Sbjct: 434 gacgcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgc 375
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| ||| | || ||||||||||||||||||| || || |||| |||||||| |||||
Sbjct: 374 cgctgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggcc 315
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||| |||||||||| |||||||||||||||||| |||| || || || || ||||||
Sbjct: 314 gacatcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaag 255
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || || |||||||||| || | | |||
Sbjct: 254 gccgccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtcc 195
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 194 gacaaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaag 135
Query: 618 atc 620
|||
Sbjct: 134 atc 132
>ref|NT_079921.2| Oryza sativa (japonica cultivar-group)
Length = 1595909
Score = 307 bits (155), Expect = 4e-081
Identities = 356/423 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct: 1066248 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 1066307
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| ||| | ||||| ||||| || ||||||||| |||||||
Sbjct: 1066308 atcgccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatc 1066367
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| | ||||||||||||||||| |||||||| || || |||
Sbjct: 1066368 gacgcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgc 1066427
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| ||| | || ||||||||||||||||||| || || |||| |||||||| |||||
Sbjct: 1066428 cgctgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggcc 1066487
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||| |||||||||| |||||||||||||||||| |||| || || || || ||||||
Sbjct: 1066488 gacatcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaag 1066547
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || || |||||||||| || | | |||
Sbjct: 1066548 gccgccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtcc 1066607
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 1066608 gacaaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaag 1066667
Query: 618 atc 620
|||
Sbjct: 1066668 atc 1066670
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 307 bits (155), Expect = 4e-081
Identities = 356/423 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
||||||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||
Sbjct: 4340859 aagatggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtc 4340918
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| ||| | ||||| ||||| || ||||||||| |||||||
Sbjct: 4340919 atcgccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatc 4340978
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| ||||||||||||||| | ||||||||||||||||| |||||||| || || |||
Sbjct: 4340979 gacgcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgc 4341038
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
| ||| | || ||||||||||||||||||| || || |||| |||||||| |||||
Sbjct: 4341039 cgctgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggcc 4341098
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||| |||||||||| |||||||||||||||||| |||| || || || || ||||||
Sbjct: 4341099 gacatcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaag 4341158
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || || |||||||||| || | | |||
Sbjct: 4341159 gccgccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtcc 4341218
Query: 558 gacaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaag 617
|||||| |||| ||||||||||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 4341219 gacaaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaag 4341278
Query: 618 atc 620
|||
Sbjct: 4341279 atc 4341281
Score = 252 bits (127), Expect = 2e-064
Identities = 362/441 (82%)
Strand = Plus / Minus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| || || || || || ||||| || ||||| || ||
Sbjct: 9038511 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 9038452
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|| ||||||||||| ||| | ||||| || || || |||||||| ||| || || |||
Sbjct: 9038451 gcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgag 9038392
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
| ||||||||||| |||||| ||||||||||||||||| || ||||| || | ||||
Sbjct: 9038391 gggtggaacagcgagcgcctccccatctacgagcccggcctggacgatgtcgtcaggcag 9038332
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | ||| | ||||||||||||||||| || || ||| |||||||| || || | |
Sbjct: 9038331 tgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggc 9038272
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| || |||||||||||||||||||| || || || || || |||||
Sbjct: 9038271 atcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggcc 9038212
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || || |||||||| |||||| || |||
Sbjct: 9038211 gccgacctcacctactgggagagcgccgcccgcatcatcgccgacgtctcccgctccgac 9038152
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 9038151 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgccgaggccatcgagaagatc 9038092
Query: 621 ttgacccacnncagcaagggc 641
| ||||| ||||||||||
Sbjct: 9038091 ctcgcccacaacagcaagggc 9038071
>ref|XM_468764.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1446
Score = 301 bits (152), Expect = 3e-079
Identities = 353/420 (84%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
|||||||||||||||||| |||| || ||||||||||| ||||| |||||||| |||||
Sbjct: 1 atggtgaagatctgctgcctcggagccggctatgtcggcggcccgaccatggcggtcatc 60
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|||||||||||||| ||| | ||||| ||||| || ||||||||| ||||||| ||
Sbjct: 61 gccctcaagtgccccgacgtcgaggtggtcgtcgtcgacatctccgccgcccgcatcgac 120
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
||||||||||||||| | ||||||||||||||||| |||||||| || || ||| |
Sbjct: 121 gcctggaacagcgacgcgctcccgatctacgagccgggcctcgacgacgtcgtgcgccgc 180
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | || ||||||||||||||||||| || || |||| |||||||| ||||| |||
Sbjct: 181 tgccgcgggaggaacctcttcttcagcagcgacgtcgagaggcacgtcggcgaggccgac 240
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| |||||||||||||||||| |||| || || || || ||||||||
Sbjct: 241 atcgtcttcgtctccgtgaacacccccaccaaggcccgcggcctcggcgccggcaaggcc 300
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || |||||||||| || | | ||| |||
Sbjct: 301 gccgacctcacctactgggagagcgcggcgcggatgatcgccgccgtggcgacgtccgac 360
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
||| |||| ||||||||||||||||| || ||||||||||| ||||| || |||||||||
Sbjct: 361 aaggtcgtcgtcgagaagtccaccgtgccggtcaagaccgcggaggccatcgagaagatc 420
>gb|CF589243.1|CF589243 EST00G12 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI110, mRNA
sequence
Length = 733
Score = 281 bits (142), Expect = 3e-073
Identities = 310/366 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 93 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 152
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 153 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 212
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 213 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 272
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 273 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcg 332
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 333 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 392
Query: 498 gctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtct 557
|| |||||||||||||||||||||||||| || | ||||||||||| || ||||||||
Sbjct: 393 gcggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtcc 452
Query: 558 gacaag 563
||||||
Sbjct: 453 gacaag 458
>gb|AU164816.1|AU164816 AU164816 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61383, mRNA sequence
Length = 368
Score = 268 bits (135), Expect = 4e-069
Identities = 244/280 (87%), Gaps = 1/280 (0%)
Strand = Plus / Plus
Query: 379 agtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctg 438
||||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |
Sbjct: 19 agtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcgg 78
Query: 439 acatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaagg 498
||||||||||||| || |||||||| || |||||||| || || | || || |||||||
Sbjct: 79 acatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcntcggcgccggcaagg 138
Query: 499 ctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctg 558
| |||||||||||||||||||||||||| || | ||||||||||| || |||||||| |
Sbjct: 139 cggccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtccg 198
Query: 559 acaagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaaga 618
|||||||||| ||||||||||||| ||| || |||||||| || ||||| || |||||||
Sbjct: 199 acaagatcgtcgtcgagaagtcca-cgtgccggtcaagacggccgaggcgatcgagaaga 257
Query: 619 tcttgacccacnncagcaagggcatcaactaccagatcct 658
|| |||| ||| |||||||||||||||||||||||||||
Sbjct: 258 tcctgacgcacaacagcaagggcatcaactaccagatcct 297
>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
sequence
Length = 145590
Score = 252 bits (127), Expect = 2e-064
Identities = 362/441 (82%)
Strand = Plus / Minus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| || || || || || ||||| || ||||| || ||
Sbjct: 46193 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 46134
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|| ||||||||||| ||| | ||||| || || || |||||||| ||| || || |||
Sbjct: 46133 gcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgag 46074
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
| ||||||||||| |||||| ||||||||||||||||| || ||||| || | ||||
Sbjct: 46073 gggtggaacagcgagcgcctccccatctacgagcccggcctggacgatgtcgtcaggcag 46014
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | ||| | ||||||||||||||||| || || ||| |||||||| || || | |
Sbjct: 46013 tgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggc 45954
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| || |||||||||||||||||||| || || || || || |||||
Sbjct: 45953 atcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggcc 45894
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || || |||||||| |||||| || |||
Sbjct: 45893 gccgacctcacctactgggagagcgccgcccgcatcatcgccgacgtctcccgctccgac 45834
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 45833 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgccgaggccatcgagaagatc 45774
Query: 621 ttgacccacnncagcaagggc 641
| ||||| ||||||||||
Sbjct: 45773 ctcgcccacaacagcaagggc 45753
>gb|AACV01007276.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007276, whole
genome shotgun sequence
Length = 14197
Score = 252 bits (127), Expect = 2e-064
Identities = 362/441 (82%)
Strand = Plus / Minus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| || || || || || ||||| || ||||| || ||
Sbjct: 5076 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 5017
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|| ||||||||||| ||| | ||||| || || || |||||||| ||| || || |||
Sbjct: 5016 gcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgag 4957
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
| ||||||||||| |||||| ||||||||||||||||| || ||||| || | ||||
Sbjct: 4956 gggtggaacagcgagcgcctccccatctacgagcccggcctggacgatgtcgtcaggcag 4897
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | ||| | ||||||||||||||||| || || ||| |||||||| || || | |
Sbjct: 4896 tgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggc 4837
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| || |||||||||||||||||||| || || || || || |||||
Sbjct: 4836 atcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggcc 4777
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || || |||||||| |||||| || |||
Sbjct: 4776 gccgacctcacctactgggagagcgccgcccgcatcatcgccgacgtctcccgctccgac 4717
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 4716 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgccgaggccatcgagaagatc 4657
Query: 621 ttgacccacnncagcaagggc 641
| ||||| ||||||||||
Sbjct: 4656 ctcgcccacaacagcaagggc 4636
>ref|NT_107174.1| Oryza sativa (japonica cultivar-group)
Length = 4376475
Score = 252 bits (127), Expect = 2e-064
Identities = 362/441 (82%)
Strand = Plus / Minus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| || || || || || ||||| || ||||| || ||
Sbjct: 3039050 atggtgaagatctgctgcatcggggcggggtacgtgggcggcccgacgatggcggtgatc 3038991
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|| ||||||||||| ||| | ||||| || || || |||||||| ||| || || |||
Sbjct: 3038990 gcgctcaagtgccccgacgtggaggtggtggtggtggacatctcggcgccgcggatcgag 3038931
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
| ||||||||||| |||||| ||||||||||||||||| || ||||| || | ||||
Sbjct: 3038930 gggtggaacagcgagcgcctccccatctacgagcccggcctggacgatgtcgtcaggcag 3038871
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||| | ||| | ||||||||||||||||| || || ||| |||||||| || || | |
Sbjct: 3038870 tgccgcggccgcaacctcttcttcagcaccgacgtcgagcgccacgtcgccgacgccggc 3038811
Query: 441 atcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaaggct 500
||| |||||||||| || |||||||||||||||||||| || || || || || |||||
Sbjct: 3038810 atcgtcttcgtctccgtcaacacccccaccaagacccgcggcctcggcgccgggaaggcc 3038751
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || || || |||||||| |||||| || |||
Sbjct: 3038750 gccgacctcacctactgggagagcgccgcccgcatcatcgccgacgtctcccgctccgac 3038691
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||||
Sbjct: 3038690 aagatcgtcgtcgagaagtccaccgtccccgtcaagaccgccgaggccatcgagaagatc 3038631
Query: 621 ttgacccacnncagcaagggc 641
| ||||| ||||||||||
Sbjct: 3038630 ctcgcccacaacagcaagggc 3038610
>gb|AU164298.1|AU164298 AU164298 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30860, mRNA sequence
Length = 330
Score = 248 bits (125), Expect = 4e-063
Identities = 225/259 (86%)
Strand = Plus / Plus
Query: 400 tcttcagcactgatgttgagaagcacgtcgctgaggctgacatcatcttcgtctcggtga 459
|||||||||| || || |||||||||||||| ||||| |||||||||||||| || ||||
Sbjct: 1 tcttcagcacggacgtcgagaagcacgtcgcggaggcggacatcatcttcgtgtccgtga 60
Query: 460 acacccccaccaagacccgtgggcttggagctggcaaggctgccgacctcacctactggg 519
|||| || |||||||| || || || || || |||||||| |||||||||||||||||||
Sbjct: 61 acacgccgaccaagacgcgcggcctcggcgccggcaaggcggccgacctcacctactggg 120
Query: 520 agagcgctgctcgtatgatcgccgatgtctccaagtctgacaagatcgttgtcgagaagt 579
||||||| || | ||||||||||| || |||||||| ||||||||||| ||||||||||
Sbjct: 121 agagcgcggcgaggatgatcgccgacgtgtccaagtccgacaagatcgtcgtcgagaagt 180
Query: 580 ccaccgtccctgtcaagaccgctgaggctattgagaagatcttgacccacnncagcaagg 639
||||||| || |||||||| || ||||| || ||||||||| |||| ||| ||||||||
Sbjct: 181 ccaccgtgccggtcaagacggccgaggcgatcgagaagatcctgacgcacaacagcaagg 240
Query: 640 gcatcaactaccagatcct 658
|||||||||||||||||||
Sbjct: 241 gcatcaactaccagatcct 259
>gb|AU161843.2|AU161843 AU161843 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6101, mRNA sequence
Length = 394
Score = 228 bits (115), Expect = 3e-057
Identities = 264/314 (84%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 80 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 139
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 140 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 199
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 200 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 259
Query: 378 cagtgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggct 437
||||||||||||||||||||||||||||||| || || |||||||||||||| || ||
Sbjct: 260 gagtgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggangcg 319
Query: 438 gacatcatcttcgtctcggtgaacacccccaccaagacccgtgggcttggagctggcaag 497
|||||||||||||| || |||||||| || |||||||| || || || || || ||||||
Sbjct: 320 gacatcatcttcgtgtccgtgaacacgccgaccaagacgcgcggcctcggcgccggcaag 379
Query: 498 gctgccgacctcac 511
|| |||||||||||
Sbjct: 380 gcggccgacctcac 393
>gb|AU184249.1|AU184249 AU184249 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1691, mRNA sequence
Length = 343
Score = 208 bits (105), Expect = 3e-051
Identities = 149/163 (91%), Gaps = 1/163 (0%)
Strand = Plus / Plus
Query: 497 ggctgccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtc 556
|||||| ||||||||||||||||| || |||||||| ||||| || ||||||||||||||
Sbjct: 1 ggctgctgacctcacctactgggaaagtgctgctcggatgattgctgatgtctccaagtc 60
Query: 557 tgacaagatcgttgtcgagaagtccaccgtccctgtcaa-gaccgctgaggctattgaga 615
||||||||||||||| ||||||||||| ||||||||||| ||| || ||||| |||||||
Sbjct: 61 tgacaagatcgttgttgagaagtccactgtccctgtcaaggactgcagaggccattgaga 120
Query: 616 agatcttgacccacnncagcaagggcatcaactaccagatcct 658
|||||||||||||| |||||||||||||||||||||||||||
Sbjct: 121 agatcttgacccacaacagcaagggcatcaactaccagatcct 163
>gb|CF296283.1|CF296283 30DGS--06-J07.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--06-J07, mRNA sequence
Length = 374
Score = 204 bits (103), Expect = 5e-050
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 201 atggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtcatt 260
||||||||||||||||||||||| ||||| || || || || || |||||||| || ||
Sbjct: 79 atggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtgatc 138
Query: 261 gccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgag 320
|||||||||||||| | || ||||| || || || ||||||||||||| ||||| ||
Sbjct: 139 gccctcaagtgcccggcgatcgaggtggtggtcgtctacatctccaagccgcgcatcgac 198
Query: 321 gcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcag 380
|||||||||||||| || |||||||||||||| || ||||| || || || ||| ||
Sbjct: 199 gcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaaggag 258
Query: 381 tgcaggggcaggaacctcttcttcagcactgatgttgagaagcacgtcgctgaggctgac 440
||||||||||||||||||||||||||||| || || |||||||||||||| ||||| |||
Sbjct: 259 tgcaggggcaggaacctcttcttcagcacggacgtcgagaagcacgtcgcggaggcggac 318
Query: 441 atcatcttcgtctcggtgaacacccccaccaagac 475
||||||||||| || |||||||| || ||||||||
Sbjct: 319 atcatcttcgtgtccgtgaacacgccgaccaagac 353
>gb|C99482.1|C99482 C99482 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20222_2A, mRNA sequence
Length = 376
Score = 174 bits (88), Expect = 4e-041
Identities = 140/158 (88%)
Strand = Plus / Plus
Query: 501 gccgacctcacctactgggagagcgctgctcgtatgatcgccgatgtctccaagtctgac 560
|||||||||||||||||||||||||| || | ||||||||||| || |||||||| |||
Sbjct: 32 gccgacctcacctactgggagagcgcggcgaggatgatcgccgacgtgtccaagtccgac 91
Query: 561 aagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagatc 620
|||||||| ||||||||||||||||| || |||||||| || ||||| || |||||||||
Sbjct: 92 aagatcgtcgtcgagaagtccaccgtgccggtcaagacggccgaggcgatcgagaagatc 151
Query: 621 ttgacccacnncagcaagggcatcaactaccagatcct 658
|||| ||| |||||||||||||||||||||||||||
Sbjct: 152 ctgacgcacaacagcaagggcatcaactaccagatcct 189
>gb|D39326.1|D39326 RICR3339A Rice root Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 344
Score = 157 bits (79), Expect = 1e-035
Identities = 196/234 (83%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 86 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 145
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 146 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 205
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 206 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 265
Query: 378 cagtgcaggggcaggaacctcttc-ttcagcactgatgttgagaagcacgtcgc 430
||| ||||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct: 266 gagttcaggggcaggaacctcttctttcagcacggacgtngagaagcacgtcgc 319
>gb|AU197416.1|AU197416 AU197416 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10192, mRNA sequence
Length = 306
Score = 157 bits (79), Expect = 1e-035
Identities = 178/211 (84%)
Strand = Plus / Minus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 211 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 152
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 151 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 92
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaag 377
|| |||||||||||||| || |||||||||||||| || ||||| || || || |||
Sbjct: 91 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaggtggtcaag 32
Query: 378 cagtgcaggggcaggaacctcttcttcagca 408
||||||||||||||||||||||||||||||
Sbjct: 31 gagtgcaggggcaggaacctcttcttcagca 1
>gb|CA997851.1|CA997851 S234B1_D07 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 152
Score = 141 bits (71), Expect = 6e-031
Identities = 125/143 (87%)
Strand = Plus / Plus
Query: 264 ctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcattgaggcc 323
||||| ||||||| |||||||| || |||||||||||||||||||| ||| |||| |||
Sbjct: 5 ctcaaatgcccagcaattgaggtggtggttgttgacatctccaagcctcgcgttgatgcc 64
Query: 324 tggaacagcgacaccctcccgatctacgagcccggcctcgatgatgttgtgaagcagtgc 383
|||||||||||| ||||| |||||||||||||| || ||||| ||||||||| | |||
Sbjct: 65 tggaacagcgaccagctcccaatctacgagcccggtcttgatgaggttgtgaaggaatgc 124
Query: 384 aggggcaggaacctcttcttcag 406
| |||||||||||||||||||||
Sbjct: 125 acgggcaggaacctcttcttcag 147
>gb|C74313.1|C74313 C74313 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30860_4A, mRNA sequence
Length = 314
Score = 121 bits (61), Expect = 6e-025
Identities = 173/209 (82%), Gaps = 1/209 (0%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 96 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 155
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| |||||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 156 atcgccctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 215
Query: 318 gaggcctggaacagcgacaccctcccgatctacgagcccggcctcgatg-atgttgtgaa 376
|| |||||||||||||| || |||||||||||||| || ||||| | | || || ||
Sbjct: 216 gacgcctggaacagcgagcagctgccgatctacgagccggggctcgacgaaggtggtcaa 275
Query: 377 gcagtgcaggggcaggaacctcttcttca 405
||| |||||||||||||||||||||||
Sbjct: 276 agagttcaggggcaggaacctcttcttca 304
>gb|D49288.1|D49288 RICS16488A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 352
Score = 93.7 bits (47), Expect = 1e-016
Identities = 114/137 (83%)
Strand = Plus / Plus
Query: 198 aagatggtgaagatctgctgcatcggtgctggctatgtcggtggcccaaccatggctgtc 257
|||||||||||||||||||||||||| ||||| || || || || || |||||||| ||
Sbjct: 99 aagatggtgaagatctgctgcatcggagctgggtacgtgggcgggccgaccatggcggtg 158
Query: 258 attgccctcaagtgcccagacattgaggttgtcgttgttgacatctccaagccccgcatt 317
|| | |||||||||||| | || ||||| || || || |||||||||||||| |||||
Sbjct: 159 atcgncctcaagtgcccggcgatcgaggtggtggtcgtcgacatctccaagccgcgcatc 218
Query: 318 gaggcctggaacagcga 334
|| | ||||||||||||
Sbjct: 219 gacgnctggaacagcga 235
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0067N01, from chromosome 3, complete sequence
Length = 159636
Score = 65.9 bits (33), Expect = 3e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 560 caagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagat 619
|||| |||| |||||||||||||||||||| |||||||| || ||||| || ||||||||
Sbjct: 60102 caaggtcgtcgtcgagaagtccaccgtccccgtcaagacggccgaggccatagagaagat 60161
Query: 620 c 620
|
Sbjct: 60162 c 60162
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 492 ggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccga 544
|||||||| ||||||||| |||||||||||||||| || | |||||||||||
Sbjct: 60034 ggcaaggccgccgacctcgcctactgggagagcgcggcgaggatgatcgccga 60086
>gb|AACV01005868.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005868, whole
genome shotgun sequence
Length = 55492
Score = 65.9 bits (33), Expect = 3e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 560 caagatcgttgtcgagaagtccaccgtccctgtcaagaccgctgaggctattgagaagat 619
|||| |||| |||||||||||||||||||| |||||||| || ||||| || ||||||||
Sbjct: 52924 caaggtcgtcgtcgagaagtccaccgtccccgtcaagacggccgaggccatagagaagat 52865
Query: 620 c 620
|
Sbjct: 52864 c 52864
Score = 58.0 bits (29), Expect = 7e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 492 ggcaaggctgccgacctcacctactgggagagcgctgctcgtatgatcgccga 544
|||||||| ||||||||| |||||||||||||||| || | |||||||||||
Sbjct: 52992 ggcaaggccgccgacctcgcctactgggagagcgcggcgaggatgatcgccga 52940
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 830,947
Number of Sequences: 438736
Number of extensions: 830947
Number of successful extensions: 5838
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5248
Number of HSP's gapped (non-prelim): 524
length of query: 729
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 708
effective length of database: 2,791,206,460
effective search space: 1976174173680
effective search space used: 1976174173680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)