BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750951.2.1
(1014 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF303132.1|CF303132 ABF1--01-G22.g1 ABF3-overexpressing ... 238 5e-060
gb|CF303247.1|CF303247 ABF1--01-L23.g1 ABF3-overexpressing ... 238 5e-060
gb|CF322778.1|CF322778 HDN--02-A16.g1 OsHDAC1-overexpressin... 238 5e-060
gb|CF324550.1|CF324550 HDN--06-N09.g1 OsHDAC1-overexpressin... 238 5e-060
dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA... 238 5e-060
dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA... 238 5e-060
ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA 238 5e-060
gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, co... 234 8e-059
gb|CB668311.1|CB668311 OSJNEd16B19.f OSJNEd Oryza sativa (j... 232 3e-058
dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA... 232 3e-058
gb|CF322973.1|CF322973 HDN--02-J09.g1 OsHDAC1-overexpressin... 230 1e-057
gb|D24959.1|D24959 RICR2847A Rice root Oryza sativa (japoni... 226 2e-056
dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA... 226 2e-056
gb|CF323484.1|CF323484 HDN--03-P15.g1 OsHDAC1-overexpressin... 224 7e-056
gb|CB674932.1|CB674932 OSJNEe10E15.f OSJNEe Oryza sativa (j... 222 3e-055
gb|BP185059.1|BP185059 BP185059 pNS rice panicle cDNA, flow... 222 3e-055
gb|CB648777.1|CB648777 OSJNEb12F12.f OSJNEb Oryza sativa (j... 214 7e-053
gb|AU183651.1|AU183651 AU183651 Rice panicle shorter than 3... 212 3e-052
gb|AU097444.1|AU097444 AU097444 Rice shoot Oryza sativa (ja... 206 2e-050
gb|CF323520.1|CF323520 HDN--04-B03.g1 OsHDAC1-overexpressin... 202 3e-049
gb|CB654045.1|CB654045 OSJNEc05K05.f OSJNEc Oryza sativa (j... 190 1e-045
gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 ... 190 1e-045
gb|AACV01007734.1| Oryza sativa (japonica cultivar-group) c... 190 1e-045
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 190 1e-045
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 190 1e-045
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 190 1e-045
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 190 1e-045
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 190 1e-045
gb|AC091670.7| Oryza sativa (japonica cultivar-group) chrom... 190 1e-045
gb|CB663657.1|CB663657 OSJNEd08O07.f OSJNEd Oryza sativa (j... 180 1e-042
gb|CF304361.1|CF304361 ABF1--04-M08.g1 ABF3-overexpressing ... 174 6e-041
gb|CF312911.1|CF312911 ABF--08-N15.b1 ABF3-overexpressing t... 174 6e-041
gb|C26022.2|C26022 C26022 Rice callus cDNA Oryza sativa (ja... 174 6e-041
gb|CF323923.1|CF323923 HDN--05-C04.g1 OsHDAC1-overexpressin... 172 2e-040
gb|CB643857.1|CB643857 OSJNEb04M14.f OSJNEb Oryza sativa (j... 157 1e-035
gb|CB643189.1|CB643189 OSJNEb03L22.f OSJNEb Oryza sativa (j... 149 3e-033
dbj|AB041840.1| Oryza sativa Hd1 gene, complete cds, strain... 139 3e-030
dbj|AB041837.1| Oryza sativa (japonica cultivar-group) gene... 139 3e-030
dbj|AB041838.1| Oryza sativa (japonica cultivar-group) mRNA... 139 3e-030
gb|AACV01013544.1| Oryza sativa (japonica cultivar-group) c... 139 3e-030
dbj|AP003044.1| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
dbj|AP005813.1| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
ref|NM_185797.1| Oryza sativa (japonica cultivar-group), p... 139 3e-030
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 139 3e-030
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 139 3e-030
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 139 3e-030
gb|D46605.1|D46605 RICS11375A Rice green shoot Oryza sativa... 137 1e-029
dbj|AG213590.1| Oryza sativa (japonica cultivar-group) DNA,... 133 2e-028
gb|C27840.1|C27840 C27840 Rice callus cDNA Oryza sativa (ja... 133 2e-028
gb|CB668191.1|CB668191 OSJNEd15O19.f OSJNEd Oryza sativa (j... 127 1e-026
gb|CF196154.1|CF196154 Azvi1.2_E12 AZ-VI Oryza sativa (japo... 123 2e-025
gb|AU069490.1|AU069490 AU069490 Rice callus Oryza sativa (j... 115 5e-023
gb|CB663623.1|CB663623 OSJNEd08N06.f OSJNEd Oryza sativa (j... 115 5e-023
gb|CB656093.1|CB656093 OSJNEc10A12.f OSJNEc Oryza sativa (j... 103 2e-019
gb|D46619.1|D46619 RICS11396A Rice green shoot Oryza sativa... 94 2e-016
dbj|AK105850.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
dbj|AK120790.1| Oryza sativa (japonica cultivar-group) cDNA... 94 2e-016
ref|XM_469438.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-016
ref|XM_469437.1| Oryza sativa (japonica cultivar-group), mRNA 88 1e-014
gb|AU174681.1|AU174681 AU174681 Rice cDNA from leaf Oryza s... 84 2e-013
dbj|AB001887.1| Oryza sativa (japonica cultivar-group) cDNA... 84 2e-013
dbj|AP005560.3| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|AACV01019176.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
ref|NT_107079.1| Oryza sativa (japonica cultivar-group) 84 2e-013
gb|CH401233.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|AU176521.1|AU176521 AU176521 Rice root Oryza sativa (jap... 78 1e-011
gb|CB646371.1|CB646371 OSJNEb08M23.f OSJNEb Oryza sativa (j... 78 1e-011
gb|AU183650.1|AU183650 AU183650 Rice panicle shorter than 3... 74 2e-010
gb|AU183652.1|AU183652 AU183652 Rice panicle shorter than 3... 74 2e-010
gb|CB641230.1|CB641230 OSJNEa18F21.f OSJNEa Oryza sativa (j... 72 6e-010
gb|CB678870.1|CB678870 OSJNEf01K05.r OSJNEf Oryza sativa (j... 60 2e-006
dbj|AK059517.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
gb|AU032064.2|AU032064 AU032064 Rice root Oryza sativa (jap... 48 0.009
dbj|AK120101.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AP004274.5| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AACV01016982.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|NM_186092.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.009
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.009
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AQ273257.1|AQ273257 nbxb0029H15f CUGI Rice BAC Library O... 44 0.15
gb|AQ574428.1|AQ574428 nbxb0085B03f CUGI Rice BAC Library O... 44 0.15
dbj|AK071372.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.15
gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, N... 44 0.15
gb|AACV01021195.1| Oryza sativa (japonica cultivar-group) c... 44 0.15
ref|NM_195684.1| Oryza sativa (japonica cultivar-group) put... 44 0.15
ref|NT_080064.1| Oryza sativa (japonica cultivar-group) chr... 44 0.15
gb|CH401251.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 44 0.15
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.15
>gb|CF303132.1|CF303132 ABF1--01-G22.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--01-G22, mRNA sequence
Length = 639
Score = 238 bits (120), Expect = 5e-060
Identities = 305/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 555 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 496
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 495 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 436
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 435 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 376
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 375 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 316
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 315 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 256
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 255 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 196
Query: 831 acaccttct 839
|| ||||||
Sbjct: 195 acgccttct 187
>gb|CF303247.1|CF303247 ABF1--01-L23.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--01-L23, mRNA sequence
Length = 740
Score = 238 bits (120), Expect = 5e-060
Identities = 305/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 529 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 470
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 469 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 410
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 409 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 350
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 349 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 290
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 289 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 230
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 229 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 170
Query: 831 acaccttct 839
|| ||||||
Sbjct: 169 acgccttct 161
>gb|CF322778.1|CF322778 HDN--02-A16.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-A16, mRNA sequence
Length = 520
Score = 238 bits (120), Expect = 5e-060
Identities = 305/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 519 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 460
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 459 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 400
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 399 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 340
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 339 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 280
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 279 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 220
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 219 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 160
Query: 831 acaccttct 839
|| ||||||
Sbjct: 159 acgccttct 151
>gb|CF324550.1|CF324550 HDN--06-N09.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-N09, mRNA sequence
Length = 530
Score = 238 bits (120), Expect = 5e-060
Identities = 305/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 519 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 460
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 459 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 400
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 399 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 340
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 339 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 280
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 279 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 220
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 219 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 160
Query: 831 acaccttct 839
|| ||||||
Sbjct: 159 acgccttct 151
>dbj|AK100165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021K07, full
insert sequence
Length = 1894
Score = 238 bits (120), Expect = 5e-060
Identities = 305/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 862 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 803
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 802 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 743
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 742 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 683
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 682 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 623
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 622 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 563
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 562 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 503
Query: 831 acaccttct 839
|| ||||||
Sbjct: 502 acgccttct 494
>dbj|AK105026.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-H02, full
insert sequence
Length = 1846
Score = 238 bits (120), Expect = 5e-060
Identities = 305/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 859 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 800
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 799 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 740
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 739 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 680
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 679 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 620
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 619 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 560
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 559 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 500
Query: 831 acaccttct 839
|| ||||||
Sbjct: 499 acgccttct 491
>ref|XM_469436.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1849
Score = 238 bits (120), Expect = 5e-060
Identities = 305/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 856 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 797
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 796 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 737
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 736 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 677
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 676 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 617
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 616 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 557
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 556 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 497
Query: 831 acaccttct 839
|| ||||||
Sbjct: 496 acgccttct 488
>gb|U28047.2|OSU28047 Oryza sativa beta-glucosidase mRNA, complete cds
Length = 1909
Score = 234 bits (118), Expect = 8e-059
Identities = 270/322 (83%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 867 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 808
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 807 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 748
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 747 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 688
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 687 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 628
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 627 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 568
Query: 771 ttgatgtaaggagtnatgcctt 792
|||| |||||||| || ||||
Sbjct: 567 ttgacataaggagtgatacctt 546
>gb|CB668311.1|CB668311 OSJNEd16B19.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16B19 5', mRNA sequence
Length = 856
Score = 232 bits (117), Expect = 3e-058
Identities = 304/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||| | || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 847 cggtatcttgcancagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 788
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 787 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 728
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 727 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 668
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 667 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 608
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 607 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 548
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 547 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 488
Query: 831 acaccttct 839
|| ||||||
Sbjct: 487 acgccttct 479
>dbj|AK103027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117C01, full
insert sequence
Length = 1857
Score = 232 bits (117), Expect = 3e-058
Identities = 264/314 (84%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 858 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 799
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 798 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 739
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 738 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 679
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 678 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 619
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 618 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 559
Query: 771 ttgatgtaaggagt 784
|||| ||||||||
Sbjct: 558 ttgacataaggagt 545
>gb|CF322973.1|CF322973 HDN--02-J09.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--02-J09, mRNA sequence
Length = 607
Score = 230 bits (116), Expect = 1e-057
Identities = 304/369 (82%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 523 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 464
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 463 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 404
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 403 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 344
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| | ||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 343 cgattgccaaaagtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 284
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 283 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 224
Query: 771 ttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgct 830
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| |||
Sbjct: 223 ttgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgct 164
Query: 831 acaccttct 839
|| ||||||
Sbjct: 163 acgccttct 155
>gb|D24959.1|D24959 RICR2847A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2847_1A, mRNA sequence
Length = 470
Score = 226 bits (114), Expect = 2e-056
Identities = 269/322 (83%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 380 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 321
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| | |||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 320 tctgttgctgagtccccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 261
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 260 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 201
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 200 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 141
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaagg 770
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 140 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaaga 81
Query: 771 ttgatgtaaggagtnatgcctt 792
|||| |||||||| || ||||
Sbjct: 80 ttgacataaggagtgatacctt 59
>dbj|AK059920.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G08, full
insert sequence
Length = 1302
Score = 226 bits (114), Expect = 2e-056
Identities = 252/299 (84%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 303 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 244
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 243 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 184
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 183 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 124
Query: 651 cgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttc 710
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 123 cgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccattttt 64
Query: 711 gcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaag 769
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 63 gcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaag 5
>gb|CF323484.1|CF323484 HDN--03-P15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--03-P15, mRNA sequence
Length = 647
Score = 224 bits (113), Expect = 7e-056
Identities = 305/370 (82%), Gaps = 1/370 (0%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtag-catgtgccaagagaaaattatgagcaactatgtaagg 529
|||||||||||||| || | || |||||| |||||||||||||||||||| ||||| ||
Sbjct: 564 cggtatcttgcaacagctgcaggcatgtgataagagaaaattatgagcaacaatgtatgg 505
Query: 530 ttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccc 589
||| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| ||
Sbjct: 504 ttctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcc 445
Query: 590 tgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttac 649
| |||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 444 ttggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgac 385
Query: 650 gcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatctt 709
|||| ||| ||||||| ||||||||||| || || || || || | |||||||| ||
Sbjct: 384 acgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaatagatccgccatttt 325
Query: 710 cgcgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaag 769
|| | ||||| ||||| || |||||||||||||||||||| ||||| |||||||||||
Sbjct: 324 tgcattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaag 265
Query: 770 gttgatgtaaggagtnatgccttgctgaagcagatagnntatcaaattattgtnatacgc 829
|||| |||||||| || |||| ||| || || ||| ||| | ||| |||| ||| ||
Sbjct: 264 attgacataaggagtgatacctttctgcagaaggtagtttataagattgttgtaatatgc 205
Query: 830 tacaccttct 839
||| ||||||
Sbjct: 204 tacgccttct 195
>gb|CB674932.1|CB674932 OSJNEe10E15.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E15 5', mRNA sequence
Length = 806
Score = 222 bits (112), Expect = 3e-055
Identities = 288/349 (82%)
Strand = Plus / Minus
Query: 491 agcatgtgccaagagaaaattatgagcaactatgtaaggttcggttgctgaattcccacc 550
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 802 agcatgtgataagagaaaattatgagcaacaatgtatggttctgttgctgagttcccacc 743
Query: 551 agcagcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgc 610
|||||||||| | |||||||||| ||||||||||| ||| |||||| ||||| || ||
Sbjct: 742 agcagcgcattttgtgcaccttttaggaggatttgttccttggtcataaccaagaagtgc 683
Query: 611 tactatccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaa 670
|||||||||||||||||| ||| ||||||||||| || |||| ||| ||||||| ||
Sbjct: 682 tactatccttggctcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaa 623
Query: 671 acagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccata 730
||||||||| || || || || || | |||||||| || || | ||||| ||||| ||
Sbjct: 622 acagaagtccgcgtactccgtgaatagatccgccatttttgcattcaaccagcctccgta 563
Query: 731 tttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcc 790
|||||||||||||||||||| ||||| ||||||||||| |||| |||||||| || ||
Sbjct: 562 cttcttctcaagcgcaagagggagatcgtagtggtaaagattgacataaggagtgatacc 503
Query: 791 ttgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
|| ||| || || ||| ||| | ||| |||| ||| ||||| ||||||
Sbjct: 502 tttctgcagaaggtagtttataagattgttgtaatatgctacgccttct 454
>gb|BP185059.1|BP185059 BP185059 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone 12YPR039, mRNA
sequence
Length = 467
Score = 222 bits (112), Expect = 3e-055
Identities = 288/349 (82%)
Strand = Plus / Minus
Query: 491 agcatgtgccaagagaaaattatgagcaactatgtaaggttcggttgctgaattcccacc 550
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 383 agcatgtgataagagaaaattatgagcaacaatgtatggttctgttgctgagttcccacc 324
Query: 551 agcagcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgc 610
|||||||||| | |||||||||| ||||||||||| ||| |||||| ||||| || ||
Sbjct: 323 agcagcgcattttgtgcaccttttaggaggatttgttccttggtcataaccaagaagtgc 264
Query: 611 tactatccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaa 670
|||||||||||||||||| ||| ||||||||||| || |||| ||| ||||||| ||
Sbjct: 263 tactatccttggctcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaa 204
Query: 671 acagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccata 730
||||||||| || || || || || | |||||||| || || | ||||| ||||| ||
Sbjct: 203 acagaagtccgcgtactccgtgaatagatccgccatttttgcattcaaccagcctccgta 144
Query: 731 tttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcc 790
|||||||||||||||||||| ||||| ||||||||||| |||| |||||||| || ||
Sbjct: 143 cttcttctcaagcgcaagagggagatcgtagtggtaaagattgacataaggagtgatacc 84
Query: 791 ttgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
|| ||| || || ||| ||| | ||| |||| ||| ||||| ||||||
Sbjct: 83 tttctgcagaaggtagtttataagattgttgtaatatgctacgccttct 35
>gb|CB648777.1|CB648777 OSJNEb12F12.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb12F12 5', mRNA sequence
Length = 826
Score = 214 bits (108), Expect = 7e-053
Identities = 287/349 (82%)
Strand = Plus / Minus
Query: 491 agcatgtgccaagagaaaattatgagcaactatgtaaggttcggttgctgaattcccacc 550
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||
Sbjct: 824 agcatgtgataagagaaaattatgagcaacaatgtatggttctgttgctgagttcccacc 765
Query: 551 agcagcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgc 610
|||||||||| | |||||||||| ||||||||| | ||| |||||| ||||| || ||
Sbjct: 764 agcagcgcattttgtgcaccttttaggaggattagttccttggtcataaccaagaagtgc 705
Query: 611 tactatccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaa 670
|||||||||||||||||| ||| ||||||||||| || |||| ||| ||||||| ||
Sbjct: 704 tactatccttggctcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaa 645
Query: 671 acagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccata 730
||||||||| || || || || || | |||||||| || || | ||||| ||||| ||
Sbjct: 644 acagaagtccgcgtactccgtgaatagatccgccatttttgcattcaaccagcctccgta 585
Query: 731 tttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcc 790
|||||||||||||||||||| ||||| ||||||||||| |||| |||||||| || ||
Sbjct: 584 cttcttctcaagcgcaagagggagatcgtagtggtaaagattgacataaggagtgatacc 525
Query: 791 ttgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
|| ||| || || ||| ||| | ||| |||| ||| ||||| ||||||
Sbjct: 524 tttctgcagaaggtagtttataagattgttgtaatatgctacgccttct 476
>gb|AU183651.1|AU183651 AU183651 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31058, mRNA sequence
Length = 531
Score = 212 bits (107), Expect = 3e-052
Identities = 244/291 (83%)
Strand = Plus / Minus
Query: 502 agagaaaattatgagcaactatgtaaggttcggttgctgaattcccaccagcagcgcatc 561
||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 531 agagaaaattatgagcaacaatgtatggttctgttgctgagttcccaccagcagcgcatt 472
Query: 562 tggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgctactatccttg 621
| |||||||||| ||||||||||| ||| |||||| ||||| || |||||||||||||
Sbjct: 471 ttgtgcaccttttaggaggatttgttccttggtcataaccaagaagtgctactatccttg 412
Query: 622 gctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcag 681
||||||| ||| ||||||||||| || |||| ||| ||||||| ||||||||||| |
Sbjct: 411 gctcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaaacagaagtccg 352
Query: 682 catagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttcttctcaa 741
| || || || || | |||||||| || || | ||||| ||||| || ||||||||||
Sbjct: 351 cgtactccgtgaatagatccgccatttttgcattcaaccagcctccgtacttcttctcaa 292
Query: 742 gcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcctt 792
|||||||||| ||||| ||||||||||| |||| |||||||| || ||||
Sbjct: 291 gcgcaagagggagatcgtagtggtaaagattgacataaggagtgatacctt 241
>gb|AU097444.1|AU097444 AU097444 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4984, mRNA sequence
Length = 561
Score = 206 bits (104), Expect = 2e-050
Identities = 266/321 (82%), Gaps = 1/321 (0%)
Strand = Plus / Minus
Query: 473 gtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggttc 532
|||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||||
Sbjct: 561 gtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggttc 502
Query: 533 ggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccctgt 592
|||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 501 tgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttccttg 442
Query: 593 gtcatagccaagtagcgctactat-ccttggctcattgaatnnnaaccagtgctttacgc 651
|||||| ||||| || |||||||| |||||||||||| ||| ||||||||||| | |
Sbjct: 441 gtcataaccaagaagtgctactatcccttggctcattaaatgtaaaccagtgcttgncac 382
Query: 652 gatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaacaagtccgccatcttcg 711
||| ||| ||||||| || |||||||| || || || || || | |||||||| || |
Sbjct: 381 gattgccaaaggtcttgaancagaagtccgcntactccgtgaatagatccgccatttttg 322
Query: 712 cgcttaaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggt 771
| | ||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 321 cattcaaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagat 262
Query: 772 tgatgtaaggagtnatgcctt 792
||| |||||||| || ||||
Sbjct: 261 tgacataaggagtgatacctt 241
>gb|CF323520.1|CF323520 HDN--04-B03.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-B03, mRNA sequence
Length = 514
Score = 202 bits (102), Expect = 3e-049
Identities = 272/331 (82%)
Strand = Plus / Minus
Query: 509 attatgagcaactatgtaaggttcggttgctgaattcccaccagcagcgcatctggtgca 568
|||||||||||| ||||| ||||| |||||||| |||||||||||||||||| | |||||
Sbjct: 514 attatgagcaacaatgtatggttctgttgctgagttcccaccagcagcgcattttgtgca 455
Query: 569 cctttgaggaggatttgaccctgtgtcatagccaagtagcgctactatccttggctcatt 628
||||| ||||||||||| ||| |||||| ||||| || ||||||||||||||||||||
Sbjct: 454 ccttttaggaggatttgttccttggtcataaccaagaagtgctactatccttggctcatt 395
Query: 629 gaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
||| ||||||||||| || |||| ||| ||||||| ||||||||||| || || ||
Sbjct: 394 aaatgtaaaccagtgcttgacacgattgccaaaggtcttgaaacagaagtccgcgtactc 335
Query: 689 tgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaag 748
|| || | |||||||| || || | ||||| ||||| || |||||||||||||||||
Sbjct: 334 cgtgaatagatccgccatttttgcattcaaccagcctccgtacttcttctcaagcgcaag 275
Query: 749 aggaagatcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagatagnn 808
||| ||||| ||||||||||| |||| |||||||| || |||| ||| || || |||
Sbjct: 274 agggagatcgtagtggtaaagattgacataaggagtgatacctttctgcagaaggtagtt 215
Query: 809 tatcaaattattgtnatacgctacaccttct 839
||| | ||| |||| ||| ||||| ||||||
Sbjct: 214 tataagattgttgtaatatgctacgccttct 184
>gb|CB654045.1|CB654045 OSJNEc05K05.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05K05 5', mRNA sequence
Length = 794
Score = 190 bits (96), Expect = 1e-045
Identities = 266/325 (81%)
Strand = Plus / Minus
Query: 515 agcaactatgtaaggttcggttgctgaattcccaccagcagcgcatctggtgcacctttg 574
|||||| ||||| ||||| |||||||| |||||||||||||||||| | ||||||||||
Sbjct: 794 agcaacaatgtatggttctgttgctgagttcccaccagcagcgcattttgtgcacctttt 735
Query: 575 aggaggatttgaccctgtgtcatagccaagtagcgctactatccttggctcattgaatnn 634
||||||||||| ||| |||||| ||||| || |||||||||||||||||||| |||
Sbjct: 734 aggaggatttgttccttggtcataaccaagaagtgctactatccttggctcattaaatgt 675
Query: 635 naaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcatagtctgtaaa 694
||||||||||| || |||| ||| ||||||| ||||||||||| || || || || ||
Sbjct: 674 aaaccagtgcttgacacgattgccaaaggtcttgaaacagaagtccgcgtactccgtgaa 615
Query: 695 caagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagcgcaagaggaag 754
| |||||||| || || | ||||| ||||| || |||||||||||||||||||| ||
Sbjct: 614 tagatccgccatttttgcattcaaccagcctccgtacttcttctcaagcgcaagagggag 555
Query: 755 atcatagtggtaaaggttgatgtaaggagtnatgccttgctgaagcagatagnntatcaa 814
||| ||||||||||| |||| |||||||| || |||| ||| || || ||| ||| |
Sbjct: 554 atcgtagtggtaaagattgacataaggagtgatacctttctgcagaaggtagtttataag 495
Query: 815 attattgtnatacgctacaccttct 839
||| |||| ||| ||||| ||||||
Sbjct: 494 attgttgtaatatgctacgccttct 470
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
sequence
Length = 133889
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 77823 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 77764
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 77763 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 77704
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 77703 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 77644
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 77643 cgattgccaaaggtcttgaaacagaagtc 77615
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Minus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 68582 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 68523
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 68522 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 68463
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 68462 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 68403
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 68402 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 68363
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 77206 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 77147
Query: 777 taaggagt 784
||||||||
Sbjct: 77146 taaggagt 77139
>gb|AACV01007734.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007734, whole
genome shotgun sequence
Length = 18411
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 17697 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 17638
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 17637 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 17578
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 17577 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 17518
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 17517 cgattgccaaaggtcttgaaacagaagtc 17489
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Minus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 8456 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 8397
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 8396 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 8337
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 8336 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 8277
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 8276 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 8237
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 17080 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 17021
Query: 777 taaggagt 784
||||||||
Sbjct: 17020 taaggagt 17013
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Plus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 1252468 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 1252527
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 1252528 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 1252587
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 1252588 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 1252647
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 1252648 cgattgccaaaggtcttgaaacagaagtc 1252676
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Plus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 1261709 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 1261768
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 1261769 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 1261828
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 1261829 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 1261888
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 1261889 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 1261928
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 1253085 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 1253144
Query: 777 taaggagt 784
||||||||
Sbjct: 1253145 taaggagt 1253152
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Plus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 1729394 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 1729453
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 1729454 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 1729513
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 1729514 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 1729573
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 1729574 cgattgccaaaggtcttgaaacagaagtc 1729602
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Plus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 1738635 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 1738694
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 1738695 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 1738754
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 1738755 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 1738814
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 1738815 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 1738854
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 1730011 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 1730070
Query: 777 taaggagt 784
||||||||
Sbjct: 1730071 taaggagt 1730078
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Plus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 28995557 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 28995616
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 28995617 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 28995676
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 28995677 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 28995736
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 28995737 cgattgccaaaggtcttgaaacagaagtc 28995765
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Plus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 29004798 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 29004857
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 29004858 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 29004917
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 29004918 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 29004977
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 29004978 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 29005017
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 28996174 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 28996233
Query: 777 taaggagt 784
||||||||
Sbjct: 28996234 taaggagt 28996241
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Plus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 28038527 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 28038586
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 28038587 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 28038646
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 28038647 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 28038706
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 28038707 cgattgccaaaggtcttgaaacagaagtc 28038735
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Plus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 28047768 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 28047827
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 28047828 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 28047887
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 28047888 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 28047947
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 28047948 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 28047987
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 28039144 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 28039203
Query: 777 taaggagt 784
||||||||
Sbjct: 28039204 taaggagt 28039211
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Plus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 27947203 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 27947262
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 27947263 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 27947322
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 27947323 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 27947382
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 27947383 cgattgccaaaggtcttgaaacagaagtc 27947411
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Plus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 27956444 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 27956503
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 27956504 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 27956563
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 27956564 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 27956623
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 27956624 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 27956663
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 27947820 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 27947879
Query: 777 taaggagt 784
||||||||
Sbjct: 27947880 taaggagt 27947887
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
map R2847, complete sequence
Length = 100918
Score = 190 bits (96), Expect = 1e-045
Identities = 180/209 (86%)
Strand = Plus / Plus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 82931 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 82990
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 82991 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 83050
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 83051 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 83110
Query: 651 cgatcgccgtaggtcttaaaacagaagtc 679
|||| ||| ||||||| |||||||||||
Sbjct: 83111 cgattgccaaaggtcttgaaacagaagtc 83139
Score = 93.7 bits (47), Expect = 2e-016
Identities = 176/220 (80%)
Strand = Plus / Plus
Query: 469 tacggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaag 528
|||||||||| |||||||||||||||| | |||| | |||||||||||| || || |
Sbjct: 92172 tacggtatctatcaactgcagtagcatgagataagatgatattatgagcaacaatatatg 92231
Query: 529 gttcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgacc 588
| || |||||||| |||||||| ||||| || ||||||| | | ||| || | || ||
Sbjct: 92232 gctctgttgctgagttcccaccggcagcacacttggtgcatcggttaggtgggtctgtcc 92291
Query: 589 ctgtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgcttta 648
|||| |||| ||||||| |||||||||||||||||||| || ||||||| ||| |
Sbjct: 92292 ctgtatcatggccaagtgctgctactatccttggctcattaaacgtaaaccagttcttga 92351
Query: 649 cgcgatcgccgtaggtcttaaaacagaagtcagcatagtc 688
| |||||||| || ||||| ||||| || |||||||||||
Sbjct: 92352 ctcgatcgccatatgtcttgaaacaaaactcagcatagtc 92391
Score = 71.9 bits (36), Expect = 6e-010
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 717 aaccaccctccatatttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatg 776
||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct: 83548 aaccagcctccgtacttcttctcaagcgcaagagggagatcgtagtggtaaagattgaca 83607
Query: 777 taaggagt 784
||||||||
Sbjct: 83608 taaggagt 83615
>gb|CB663657.1|CB663657 OSJNEd08O07.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08O07 5', mRNA sequence
Length = 829
Score = 180 bits (91), Expect = 1e-042
Identities = 285/350 (81%), Gaps = 2/350 (0%)
Strand = Plus / Minus
Query: 491 agcatgtgccaagagaaaattatgagcaactatgtaaggttcggttgctgaatt-cccac 549
|||||||| |||||| ||||||||||||| ||||| ||||| || ||||| || |||||
Sbjct: 827 agcatgtgataagaganaattatgagcaacaatgtatggttctgt-gctgagtttcccac 769
Query: 550 cagcagcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcg 609
||||||||||| | ||||||||| ||||||||||| ||| |||||| ||||| || |
Sbjct: 768 cagcagcgcattttgtgcaccttntaggaggatttgttccttggtcataaccaagaagtg 709
Query: 610 ctactatccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaa 669
||||||||||||||||||| ||| ||||||||||| || |||| ||| ||||||| |
Sbjct: 708 ctactatccttggctcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttga 649
Query: 670 aacagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccat 729
|||||||||| || || || || || | |||||||| || || | ||||| ||||| |
Sbjct: 648 aacagaagtccgcgtactccgtgaatagatccgccatttttgcattcaaccagcctccgt 589
Query: 730 atttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgc 789
| |||||||||||||||||||| ||||| ||||||||||| |||| |||||||| || |
Sbjct: 588 acttcttctcaagcgcaagagggagatcgtagtggtaaagattgacataaggagtgatac 529
Query: 790 cttgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
||| ||| || || ||| ||| | ||| |||| ||| ||||| ||||||
Sbjct: 528 ctttctgcagaaggtagtttataagattgttgtaatatgctacgccttct 479
>gb|CF304361.1|CF304361 ABF1--04-M08.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-M08, mRNA sequence
Length = 587
Score = 174 bits (88), Expect = 6e-041
Identities = 160/185 (86%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 192 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 133
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 132 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 73
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 72 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 13
Query: 651 cgatc 655
|||||
Sbjct: 12 cgatc 8
>gb|CF312911.1|CF312911 ABF--08-N15.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-N15, mRNA sequence
Length = 519
Score = 174 bits (88), Expect = 6e-041
Identities = 169/197 (85%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 197 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 138
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 137 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 78
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctttacg 650
|||||| ||||| || |||||||||||||||||||| ||| ||||||||||| ||
Sbjct: 77 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgcttgaca 18
Query: 651 cgatcgccgtaggtctt 667
|||| ||| |||||||
Sbjct: 17 cgattgccaaaggtctt 1
>gb|C26022.2|C26022 C26022 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C11496_1A, mRNA sequence
Length = 435
Score = 174 bits (88), Expect = 6e-041
Identities = 239/288 (82%), Gaps = 2/288 (0%)
Strand = Plus / Minus
Query: 505 gaaaattatgagcaactatgtaaggttcggttgctgaattcccaccagcagcgcatctgg 564
|||||||||||||||| ||||| ||| | |||||||| | |||||||||||||||| | |
Sbjct: 364 gaaaattatgagcaacaatgtatggt-ctgttgctgagt-cccaccagcagcgcattttg 307
Query: 565 tgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgctactatccttggct 624
||||||||| ||||||||||| ||| |||||| ||||| || ||||||||||||||||
Sbjct: 306 tgcaccttttaggaggatttgttccttggtcataaccaagaagtgctactatccttggct 247
Query: 625 cattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagcat 684
|||| ||| ||||||||||| || |||| ||| ||||||| ||||||||||| || |
Sbjct: 246 cattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaaacagaagtccgcgt 187
Query: 685 agtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagcg 744
| || || || | |||||||| || || | ||||| ||||| || |||||||||||||
Sbjct: 186 actccgtgaatagatccgccatttttgcattcaaccagcctccgtacttcttctcaagcg 127
Query: 745 caagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcctt 792
||||||| ||||| ||||||||||| |||| |||||||| || ||||
Sbjct: 126 caagagggagatcgtagtggtaaagattgacataaggagtgatacctt 79
>gb|CF323923.1|CF323923 HDN--05-C04.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--05-C04, mRNA sequence
Length = 190
Score = 172 bits (87), Expect = 2e-040
Identities = 153/176 (86%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 187 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 128
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttgaccct 590
|| |||||||| |||||||||||||||||| | |||||||||| ||||||||||| |||
Sbjct: 127 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttgttcct 68
Query: 591 gtgtcatagccaagtagcgctactatccttggctcattgaatnnnaaccagtgctt 646
|||||| ||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct: 67 tggtcataaccaagaagtgctactatccttggctcattaaatgtaaaccagtgctt 12
>gb|CB643857.1|CB643857 OSJNEb04M14.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04M14 5', mRNA sequence
Length = 766
Score = 157 bits (79), Expect = 1e-035
Identities = 234/288 (81%)
Strand = Plus / Minus
Query: 552 gcagcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgct 611
||||||||| | |||||||||| ||||||||||| |||| |||||| ||||| || |||
Sbjct: 766 gcagcgcattttgtgcaccttttaggaggatttgttcctgggtcataaccaagaagtgct 707
Query: 612 actatccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaa 671
||||||||||||||||| ||| ||||||||||| || |||| ||| ||||||| |||
Sbjct: 706 actatccttggctcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaaa 647
Query: 672 cagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatat 731
|||||||| || || || || || | |||||||| || || | ||||| ||||| ||
Sbjct: 646 cagaagtccgcgtactccgtgaatagatccgccatttttgcattcaaccagcctccgtac 587
Query: 732 ttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcct 791
|||||||||||||||||||| ||||| ||||||||||| |||| |||||||| || |||
Sbjct: 586 ttcttctcaagcgcaagagggagatcgtagtggtaaagattgacataaggagtgatacct 527
Query: 792 tgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
| ||| || || ||| ||| | ||| |||| ||| ||||| ||||||
Sbjct: 526 ttctgcagaaggtagtttataagattgttgtaatatgctacgccttct 479
>gb|CB643189.1|CB643189 OSJNEb03L22.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L22 5', mRNA sequence
Length = 760
Score = 149 bits (75), Expect = 3e-033
Identities = 233/288 (80%)
Strand = Plus / Minus
Query: 552 gcagcgcatctggtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgct 611
||||||||| | |||||||||| ||||||||||| ||| |||||| ||||| || |||
Sbjct: 760 gcagcgcattttgtgcaccttttaggaggatttgttccttggtcataaccaagaagtgct 701
Query: 612 actatccttggctcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaa 671
||||||||||||||||| ||| ||||||||||| || |||| ||| ||||||| |||
Sbjct: 700 actatccttggctcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaaa 641
Query: 672 cagaagtcagcatagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatat 731
|||||||| || || || || || | |||||||| || || | ||||| ||||| ||
Sbjct: 640 cagaagtccgcgtactccgtgaatagatccgccatttttgcattcaaccagcctccgtac 581
Query: 732 ttcttctcaagcgcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcct 791
|||||||||||||||||||| ||||| ||||||||||| |||| |||||||| || |||
Sbjct: 580 ttcttctcaagcgcaagagggagatcgtagtggtaaagattgacataaggagtgatacct 521
Query: 792 tgctgaagcagatagnntatcaaattattgtnatacgctacaccttct 839
| ||| || || ||| ||| | ||| |||| ||| ||||| ||||||
Sbjct: 520 ttctgcagaaggtagtttataagattgttgtaatatgctacgccttct 473
>dbj|AB041840.1| Oryza sativa Hd1 gene, complete cds, strain:Ginbouzu
Length = 4850
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 2938 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 2997
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 2998 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 3057
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 3058 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 3103
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 2838 tcaatggaggcgggtatagtaccagaca 2865
>dbj|AB041837.1| Oryza sativa (japonica cultivar-group) gene for Hd1, complete cds
Length = 4814
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 2902 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 2961
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 2962 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 3021
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 3022 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 3067
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 2802 tcaatggaggcgggtatagtaccagaca 2829
>dbj|AB041838.1| Oryza sativa (japonica cultivar-group) mRNA for Hd1, complete cds
Length = 1557
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1100 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 1159
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 1160 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 1219
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 1220 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 1265
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 1000 tcaatggaggcgggtatagtaccagaca 1027
>gb|AACV01013544.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013544, whole
genome shotgun sequence
Length = 4710
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1862 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 1921
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 1922 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 1981
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 1982 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 2027
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 1762 tcaatggaggcgggtatagtaccagaca 1789
>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0038C05
Length = 152941
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 77339 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 77398
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 77399 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 77458
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 77459 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 77504
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 77239 tcaatggaggcgggtatagtaccagaca 77266
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0676F10
Length = 142510
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 116270 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 116329
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 116330 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 116389
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 116390 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 116435
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 116170 tcaatggaggcgggtatagtaccagaca 116197
>ref|NM_185797.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1188
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 941 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 1000
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 1001 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 1060
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 1061 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 1106
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 841 tcaatggaggcgggtatagtaccagaca 868
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 5040509 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 5040568
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 5040569 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 5040628
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 5040629 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 5040674
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 5040409 tcaatggaggcgggtatagtaccagaca 5040436
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 761017 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 761076
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 761077 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 761136
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 761137 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 761182
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 760917 tcaatggaggcgggtatagtaccagaca 760944
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 9368669 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 9368728
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 9368729 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 9368788
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 9368789 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 9368834
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 9368569 tcaatggaggcgggtatagtaccagaca 9368596
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 139 bits (70), Expect = 3e-030
Identities = 142/166 (85%)
Strand = Plus / Plus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 9348929 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 9348988
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||||| ||||| |||| ||| || ||| |||
Sbjct: 9348989 gggagaagaagaaggccaggaagtttgagaagacaatacgttatgaaacaagaaaggcgt 9349048
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 9349049 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 9349094
Score = 48.1 bits (24), Expect = 0.009
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 125 tcaatggaggtgggtatagtaccagaca 152
|||||||||| |||||||||||||||||
Sbjct: 9348829 tcaatggaggcgggtatagtaccagaca 9348856
>gb|D46605.1|D46605 RICS11375A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 364
Score = 137 bits (69), Expect = 1e-029
Identities = 188/229 (82%)
Strand = Plus / Minus
Query: 564 gtgcacctttgaggaggatttgaccctgtgtcatagccaagtagcgctactatccttggc 623
|||||||||| ||||||||||| ||| |||||| ||||| || |||||||||||||||
Sbjct: 356 gtgcaccttttaggaggatttgttccttggtcataaccaagaagtgctactatccttggc 297
Query: 624 tcattgaatnnnaaccagtgctttacgcgatcgccgtaggtcttaaaacagaagtcagca 683
||||| ||| ||||||||||| || |||| ||| ||||||| ||||||||||| ||
Sbjct: 296 tcattaaatgtaaaccagtgcttgacacgattgccaaaggtcttgaaacagaagtccgcg 237
Query: 684 tagtctgtaaacaagtccgccatcttcgcgcttaaccaccctccatatttcttctcaagc 743
|| || || || | |||||||| || || | ||||| ||||| || ||||||||||||
Sbjct: 236 tactccgtgaatagatccgccatttttgcattcaaccagcctccgtacttcttctcaagc 177
Query: 744 gcaagaggaagatcatagtggtaaaggttgatgtaaggagtnatgcctt 792
|||||||| ||||| ||||||||||| |||| |||||||| || ||||
Sbjct: 176 gcaagagggagatcgtagtggtaaagattgacataaggagtgatacctt 128
>dbj|AG213590.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09921T, 3'
flanking sequence of Tos17 insertion in rice strain
ND5008, genomic survey sequence
Length = 646
Score = 133 bits (67), Expect = 2e-028
Identities = 141/166 (84%)
Strand = Plus / Minus
Query: 234 cgctccagatgccgcttcacttggcctccatggacagggaggccagggtgctgaggtaca 293
|||| |||||| | |||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 535 cgcttcagatgtcccttcacttcagctccatggacagggaggccagggtgctcaggtaca 476
Query: 294 gggagaagaagaagagcaggaagtttgagaagaccatacggtatgcaacgaggaagacgt 353
|||||||||||||| |||||||||||||||| | ||||| |||| ||| || ||| |||
Sbjct: 475 gggagaagaagaaggccaggaagtttgagaagncaatacgttatgaaacaagaaaggcgt 416
Query: 354 acgcagaagcacggccgaggatcaagggacgcttcgcgaaaagatc 399
| ||||| ||||| || |||||||||| || ||||| || |||||
Sbjct: 415 atgcagaggcacgaccccggatcaagggccgtttcgccaagagatc 370
>gb|C27840.1|C27840 C27840 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53203_1A, mRNA sequence
Length = 271
Score = 133 bits (67), Expect = 2e-028
Identities = 103/115 (89%)
Strand = Plus / Minus
Query: 471 cggtatcttgcaactgcagtagcatgtgccaagagaaaattatgagcaactatgtaaggt 530
|||||||||||||| || | |||||||| |||||||||||||||||||| ||||| |||
Sbjct: 123 cggtatcttgcaacagctgcagcatgtgataagagaaaattatgagcaacaatgtatggt 64
Query: 531 tcggttgctgaattcccaccagcagcgcatctggtgcacctttgaggaggatttg 585
|| |||||||| |||||||||||||||||| | |||||||||| |||||||||||
Sbjct: 63 tctgttgctgagttcccaccagcagcgcattttgtgcaccttttaggaggatttg 9
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,091,239
Number of Sequences: 438736
Number of extensions: 1091239
Number of successful extensions: 7202
Number of sequences better than 0.5: 95
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6764
Number of HSP's gapped (non-prelim): 361
length of query: 1014
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 993
effective length of database: 2,791,206,460
effective search space: 2771668014780
effective search space used: 2771668014780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)