BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK067645.1| Oryza sativa (japonica cultivar-group) cDNA... 123 1e-025
ref|XM_479582.1| Oryza sativa (japonica cultivar-group), mRNA 123 1e-025
gb|AACV01017041.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
dbj|AP005167.4| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 72 4e-010
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
gb|CA998296.1|CA998296 S345B_C01 Rice cold stress germinati... 68 6e-009
gb|CB649467.1|CB649467 OSJNEb13G15.f OSJNEb Oryza sativa (j... 68 6e-009
dbj|AK100282.1| Oryza sativa (japonica cultivar-group) cDNA... 68 6e-009
gb|CB656056.1|CB656056 OSJNEc09P11.f OSJNEc Oryza sativa (j... 62 4e-007
dbj|AK119588.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbar... 58 6e-006
gb|AACV01006521.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 58 6e-006
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|AC097175.2| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|AACV01012451.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 52 3e-004
dbj|AP005294.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP005647.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01003306.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 46 0.021
dbj|AP003628.3| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|AACV01014747.1| Oryza sativa (japonica cultivar-group) c... 46 0.021
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.021
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.021
gb|AZ127591.1|AZ127591 OSJNBb0089K12f CUGI Rice BAC Library... 44 0.083
dbj|AK101849.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.083
gb|AACV01010311.1| Oryza sativa (japonica cultivar-group) c... 44 0.083
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 44 0.083
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.083
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.083
emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromoso... 44 0.083
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 44 0.083
gb|AC144558.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|AC137589.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
ref|NT_107131.1| Oryza sativa (japonica cultivar-group) 42 0.33
gb|AACV01023483.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
>dbj|AK067645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112H14, full
insert sequence
Length = 1521
Score = 123 bits (62), Expect = 1e-025
Identities = 146/174 (83%)
Strand = Plus / Plus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 335 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 394
Query: 470 agcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaaaacca 529
|||||||||| || || || ||||||| ||||| || |||||||| ||||||||||| |
Sbjct: 395 agcgttttgtggaagcagtaaatcagctgggagggccggacaaggcgacgccgaaaacaa 454
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || |||||| | ||||| |||||||| ||||| ||||
Sbjct: 455 tcatgaggctcatgggaattcctggattaaccctttaccatcttaagagtcatc 508
>ref|XM_479582.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1521
Score = 123 bits (62), Expect = 1e-025
Identities = 146/174 (83%)
Strand = Plus / Plus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 335 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 394
Query: 470 agcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaaaacca 529
|||||||||| || || || ||||||| ||||| || |||||||| ||||||||||| |
Sbjct: 395 agcgttttgtggaagcagtaaatcagctgggagggccggacaaggcgacgccgaaaacaa 454
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || |||||| | ||||| |||||||| ||||| ||||
Sbjct: 455 tcatgaggctcatgggaattcctggattaaccctttaccatcttaagagtcatc 508
>gb|AACV01017041.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017041, whole
genome shotgun sequence
Length = 36127
Score = 71.9 bits (36), Expect = 4e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 512 aggccacgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatc 571
|||| ||||||||||| ||||||||||||||||| || |||||| | ||||| |||||||
Sbjct: 5878 aggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatc 5819
Query: 572 tcaagagccatc 583
| ||||| ||||
Sbjct: 5818 ttaagagtcatc 5807
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 6078 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 6019
Query: 470 agcgttttgt 479
||||||||||
Sbjct: 6018 agcgttttgt 6009
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0060O17
Length = 180015
Score = 71.9 bits (36), Expect = 4e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 512 aggccacgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatc 571
|||| ||||||||||| ||||||||||||||||| || |||||| | ||||| |||||||
Sbjct: 157442 aggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatc 157383
Query: 572 tcaagagccatc 583
| ||||| ||||
Sbjct: 157382 ttaagagtcatc 157371
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 157642 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 157583
Query: 470 agcgttttgt 479
||||||||||
Sbjct: 157582 agcgttttgt 157573
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 71.9 bits (36), Expect = 4e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 512 aggccacgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatc 571
|||| ||||||||||| ||||||||||||||||| || |||||| | ||||| |||||||
Sbjct: 16652910 aggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatc 16652851
Query: 572 tcaagagccatc 583
| ||||| ||||
Sbjct: 16652850 ttaagagtcatc 16652839
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 16653110 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 16653051
Query: 470 agcgttttgt 479
||||||||||
Sbjct: 16653050 agcgttttgt 16653041
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 71.9 bits (36), Expect = 4e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 512 aggccacgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatc 571
|||| ||||||||||| ||||||||||||||||| || |||||| | ||||| |||||||
Sbjct: 14647651 aggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatc 14647592
Query: 572 tcaagagccatc 583
| ||||| ||||
Sbjct: 14647591 ttaagagtcatc 14647580
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 14647851 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 14647792
Query: 470 agcgttttgt 479
||||||||||
Sbjct: 14647791 agcgttttgt 14647782
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 71.9 bits (36), Expect = 4e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 512 aggccacgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatc 571
|||| ||||||||||| ||||||||||||||||| || |||||| | ||||| |||||||
Sbjct: 28047090 aggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatc 28047031
Query: 572 tcaagagccatc 583
| ||||| ||||
Sbjct: 28047030 ttaagagtcatc 28047019
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 28047290 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 28047231
Query: 470 agcgttttgt 479
||||||||||
Sbjct: 28047230 agcgttttgt 28047221
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 71.9 bits (36), Expect = 4e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 512 aggccacgccgaaaaccatcatgaggctcatggggatccctggactcaccctgtaccatc 571
|||| ||||||||||| ||||||||||||||||| || |||||| | ||||| |||||||
Sbjct: 29039905 aggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatc 29039846
Query: 572 tcaagagccatc 583
| ||||| ||||
Sbjct: 29039845 ttaagagtcatc 29039834
Score = 52.0 bits (26), Expect = 3e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| |||||||| ||||| ||||| ||||| | ||||||||| | ||| |||| |
Sbjct: 29040105 cagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatg 29040046
Query: 470 agcgttttgt 479
||||||||||
Sbjct: 29040045 agcgttttgt 29040036
>gb|CA998296.1|CA998296 S345B_C01 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 517
Score = 67.9 bits (34), Expect = 6e-009
Identities = 139/174 (79%)
Strand = Plus / Plus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| || ||||| || ||||| |||||| | | |||||||| || ||||| || |
Sbjct: 78 cagggcttgttctctcaactgatgcaaagcctaggttaaaatggacccctgagctacatg 137
Query: 470 agcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaaaacca 529
|||| ||||| ||||| || |||| || || || ||||| || || || || ||||| |
Sbjct: 138 agcgatttgtggaggcagtaaatcaacttggtggtccagaaaaagctaccccaaaaacaa 197
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| |||||||| | || ||||| ||||||||||| ||||
Sbjct: 198 tcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcatc 251
>gb|CB649467.1|CB649467 OSJNEb13G15.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13G15 5', mRNA sequence
Length = 842
Score = 67.9 bits (34), Expect = 6e-009
Identities = 139/174 (79%)
Strand = Plus / Plus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| || ||||| || ||||| |||||| | | |||||||| || ||||| || |
Sbjct: 276 cagggcttgttctctcaactgatgcaaagcctaggttaaaatggacccctgagctacatg 335
Query: 470 agcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaaaacca 529
|||| ||||| ||||| || |||| || || || ||||| || || || || ||||| |
Sbjct: 336 agcgatttgtggaggcagtaaatcaacttggtggtccagaaaaagctaccccaaaaacaa 395
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| |||||||| | || ||||| ||||||||||| ||||
Sbjct: 396 tcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcatc 449
>dbj|AK100282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074M06, full
insert sequence
Length = 1617
Score = 67.9 bits (34), Expect = 6e-009
Identities = 139/174 (79%)
Strand = Plus / Plus
Query: 410 cagggctcgtcctctccaccgatgctaagcctcgcctgaaatggacacccgagctgcacg 469
||||||| || ||||| || ||||| |||||| | | |||||||| || ||||| || |
Sbjct: 288 cagggcttgttctctcaactgatgcaaagcctaggttaaaatggacccctgagctacatg 347
Query: 470 agcgttttgttgaggcggtgcatcagctcggaggcccagacaaggccacgccgaaaacca 529
|||| ||||| ||||| || |||| || || || ||||| || || || || ||||| |
Sbjct: 348 agcgatttgtggaggcagtaaatcaacttggtggtccagaaaaagctaccccaaaaacaa 407
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| |||||||| | || ||||| ||||||||||| ||||
Sbjct: 408 tcatgaggctcatgggcgtccctggattaacactgtagcatctcaagagtcatc 461
>gb|CB656056.1|CB656056 OSJNEc09P11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09P11 5', mRNA sequence
Length = 823
Score = 61.9 bits (31), Expect = 4e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 493 cagctcggaggcccagacaaggccacgccgaaaaccatcatgaggctcatggggatccct 552
|||||||||||||| |||||||| || || || || ||||||||| | ||||| ||
Sbjct: 71 cagctcggaggcccggacaaggcgactccaaagacgatcatgagggttatgggagtcaag 130
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 131 ggactcacactttaccatctcaagagccatc 161
>dbj|AK119588.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C12, full
insert sequence
Length = 1423
Score = 61.9 bits (31), Expect = 4e-007
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 493 cagctcggaggcccagacaaggccacgccgaaaaccatcatgaggctcatggggatccct 552
|||||||||||||| |||||||| || || || || ||||||||| | ||||| ||
Sbjct: 181 cagctcggaggcccggacaaggcgactccaaagacgatcatgagggttatgggagtcaag 240
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 241 ggactcacactttaccatctcaagagccatc 271
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0035J18, from chromsome 3, complete sequence
Length = 162711
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 523 aaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccat 582
||||| ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||
Sbjct: 97980 aaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcat 97921
Query: 583 c 583
|
Sbjct: 97920 c 97920
>gb|AACV01006521.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006521, whole
genome shotgun sequence
Length = 52599
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 523 aaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccat 582
||||| ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||
Sbjct: 43805 aaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcat 43864
Query: 583 c 583
|
Sbjct: 43865 c 43865
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 523 aaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccat 582
||||| ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||
Sbjct: 3154933 aaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcat 3154992
Query: 583 c 583
|
Sbjct: 3154993 c 3154993
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 523 aaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccat 582
||||| ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||
Sbjct: 11929528 aaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcat 11929587
Query: 583 c 583
|
Sbjct: 11929588 c 11929588
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 523 aaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccat 582
||||| ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||
Sbjct: 12121890 aaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcat 12121949
Query: 583 c 583
|
Sbjct: 12121950 c 12121950
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 523 aaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccat 582
||||| ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||
Sbjct: 11809436 aaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcat 11809495
Query: 583 c 583
|
Sbjct: 11809496 c 11809496
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 523 aaaaccatcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccat 582
||||| ||||||||||||||||| |||||||| | || ||||| ||||||||||| |||
Sbjct: 11812673 aaaacaatcatgaggctcatgggcgtccctggattaacactgtatcatctcaagagtcat 11812732
Query: 583 c 583
|
Sbjct: 11812733 c 11812733
>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
complete sequence
Length = 138584
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| | |||||||| || |||||||
Sbjct: 75856 tcatgaggctcatgggcattccaggactcaccttataccatctgaaaagccatc 75803
>gb|AACV01012451.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012451, whole
genome shotgun sequence
Length = 34650
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| | |||||||| || |||||||
Sbjct: 23464 tcatgaggctcatgggcattccaggactcaccttataccatctgaaaagccatc 23517
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| | |||||||| || |||||||
Sbjct: 261973 tcatgaggctcatgggcattccaggactcaccttataccatctgaaaagccatc 261920
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| | |||||||| || |||||||
Sbjct: 6273317 tcatgaggctcatgggcattccaggactcaccttataccatctgaaaagccatc 6273264
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| | |||||||| || |||||||
Sbjct: 23573630 tcatgaggctcatgggcattccaggactcaccttataccatctgaaaagccatc 23573577
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 52.0 bits (26), Expect = 3e-004
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 530 tcatgaggctcatggggatccctggactcaccctgtaccatctcaagagccatc 583
|||||||||||||||| || || ||||||||| | |||||||| || |||||||
Sbjct: 23872021 tcatgaggctcatgggcattccaggactcaccttataccatctgaaaagccatc 23871968
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1679_B08
Length = 142529
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gtctcactcactcactcactcccagaaga 101
||||||||||||||||||||||| |||||
Sbjct: 12351 gtctcactcactcactcactccctgaaga 12379
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0026E05
Length = 159860
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gtctcactcactcactcactcccagaaga 101
||||||||||||||||||||||| |||||
Sbjct: 147866 gtctcactcactcactcactccctgaaga 147894
>gb|AACV01003306.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003306, whole
genome shotgun sequence
Length = 29945
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gtctcactcactcactcactcccagaaga 101
||||||||||||||||||||||| |||||
Sbjct: 24994 gtctcactcactcactcactccctgaaga 25022
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gtctcactcactcactcactcccagaaga 101
||||||||||||||||||||||| |||||
Sbjct: 2097658 gtctcactcactcactcactccctgaaga 2097686
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gtctcactcactcactcactcccagaaga 101
||||||||||||||||||||||| |||||
Sbjct: 2119243 gtctcactcactcactcactccctgaaga 2119271
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gtctcactcactcactcactcccagaaga 101
||||||||||||||||||||||| |||||
Sbjct: 2119243 gtctcactcactcactcactccctgaaga 2119271
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 73 gtctcactcactcactcactcccagaaga 101
||||||||||||||||||||||| |||||
Sbjct: 2097658 gtctcactcactcactcactccctgaaga 2097686
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 46.1 bits (23), Expect = 0.021
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 4539200 ggactcacactttaccatctcaagagccatc 4539230
>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0473H04
Length = 155204
Score = 46.1 bits (23), Expect = 0.021
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 42525 ggactcacactttaccatctcaagagccatc 42555
>gb|AACV01014747.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014747, whole
genome shotgun sequence
Length = 14667
Score = 46.1 bits (23), Expect = 0.021
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 3493 ggactcacactttaccatctcaagagccatc 3523
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 46.1 bits (23), Expect = 0.021
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 8398064 ggactcacactttaccatctcaagagccatc 8398094
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 46.1 bits (23), Expect = 0.021
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 26096801 ggactcacactttaccatctcaagagccatc 26096831
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 46.1 bits (23), Expect = 0.021
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 553 ggactcaccctgtaccatctcaagagccatc 583
|||||||| || |||||||||||||||||||
Sbjct: 27073715 ggactcacactttaccatctcaagagccatc 27073745
>gb|AZ127591.1|AZ127591 OSJNBb0089K12f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0089K12f, DNA
sequence
Length = 476
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 336 aaggctgtctctctcactcactcgctcact 365
>dbj|AK101849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069K05, full
insert sequence
Length = 1396
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 125 aaggctgtctctctcactcactcgctcact 96
>gb|AACV01010311.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010311, whole
genome shotgun sequence
Length = 74610
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 39615 aaggctgtctctctcactcactcgctcact 39644
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 2220429 aaggctgtctctctcactcactcgctcact 2220400
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 6261000 aaggctgtctctctcactcactcgctcact 6260971
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 25405099 aaggctgtctctctcactcactcgctcact 25405070
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02,
complete sequence
Length = 175163
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 92453 aaggctgtctctctcactcactcgctcact 92424
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 44.1 bits (22), Expect = 0.083
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 63 aaggctgtctgtctcactcactcactcact 92
|||||||||| |||||||||||| ||||||
Sbjct: 28443778 aaggctgtctctctcactcactcgctcact 28443749
>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0072L08, sequencing in progress, complete sequence
Length = 152272
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tcactcactcactcactccca 96
|||||||||||||||||||||
Sbjct: 114731 tcactcactcactcactccca 114751
>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0072L08, complete sequence
Length = 152272
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tcactcactcactcactccca 96
|||||||||||||||||||||
Sbjct: 114731 tcactcactcactcactccca 114751
>ref|NT_107131.1| Oryza sativa (japonica cultivar-group)
Length = 979141
Score = 42.1 bits (21), Expect = 0.33
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tcactcactcactcactccca 96
|||||||||||||||||||||
Sbjct: 819743 tcactcactcactcactccca 819763
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 761,138
Number of Sequences: 438736
Number of extensions: 761138
Number of successful extensions: 20987
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19871
Number of HSP's gapped (non-prelim): 1061
length of query: 583
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 562
effective length of database: 2,791,206,460
effective search space: 1568658030520
effective search space used: 1568658030520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)