BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070026.1| Oryza sativa (japonica cultivar-group) cDNA... 426 e-117
ref|XM_466220.1| Oryza sativa (japonica cultivar-group), mRNA 426 e-117
dbj|AK064925.1| Oryza sativa (japonica cultivar-group) cDNA... 155 4e-035
ref|XM_472625.1| Oryza sativa (japonica cultivar-group), p... 155 4e-035
dbj|AP004793.1| Oryza sativa (japonica cultivar-group) chro... 141 5e-031
dbj|AP005808.3| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
gb|AACV01004674.1| Oryza sativa (japonica cultivar-group) c... 141 5e-031
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 141 5e-031
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 141 5e-031
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 141 5e-031
emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromoso... 84 1e-013
gb|AACV01009842.1| Oryza sativa (japonica cultivar-group) c... 84 1e-013
ref|NT_079861.2| Oryza sativa (japonica cultivar-group) 84 1e-013
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 84 1e-013
emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromoso... 84 1e-013
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 84 1e-013
dbj|AK066725.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.094
dbj|AK070569.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.094
dbj|AP004093.3| Oryza sativa (japonica cultivar-group) geno... 44 0.094
dbj|AP004863.3| Oryza sativa (japonica cultivar-group) geno... 44 0.094
gb|AACV01003410.1| Oryza sativa (japonica cultivar-group) c... 44 0.094
ref|XM_464221.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.094
ref|XM_506725.1| PREDICTED Oryza sativa (japonica cultivar-... 44 0.094
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 44 0.094
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.094
dbj|AP005294.3| Oryza sativa (japonica cultivar-group) geno... 42 0.37
gb|AACV01003315.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.37
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 42 0.37
>dbj|AK070026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036G16, full
insert sequence
Length = 3106
Score = 426 bits (215), Expect = e-117
Identities = 353/399 (88%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 363 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 422
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacagcttgaagcatcta 381
|||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 423 gccaaggcgaattggtttactacttcccccagggccatatggaacagcttgaggcatcta 482
Query: 382 cagatcaacaacttgatcagcacttacctttgtttgatctaccacccaagattctctgca 441
|||| ||||| ||||| ||||| | ||||||||| | || ||| | ||||| |||||||
Sbjct: 483 cagaccaacagcttgaccagcatctgcctttgtttaacctgccatctaagatcctctgca 542
Query: 442 aggtggtcaatgtagaacttagagctgaaactgattctgatgaagtttatgctcaaatta 501
| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 543 aagtggtcaatgtagaacttagggctgaaaccgattcagatgaggtttatgctcaaatta 602
Query: 502 tgctgcaaccagaagcagatcaaagtgagcccaccagcccagattctgagccaccggagc 561
|||||||||||||||||||||||| ||| | |||||||||| | ||||||||| || |
Sbjct: 603 tgctgcaaccagaagcagatcaaaatgaactcaccagcccaaaacctgagccacatgaac 662
Query: 562 ctgaaagatgcaacgtctattccttctgcaagaccttgactgcttcagatacaagtaccc 621
|||||| |||||| ||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 663 ctgaaaaatgcaatgtccattccttctgcaagactttgactgcttcagatacaagcaccc 722
Query: 622 atggtggattctctgtcctcaggaggcatgctgaagaat 660
|||||||||| || || || ||||||||||| |||||||
Sbjct: 723 atggtggattttcagttcttaggaggcatgcagaagaat 761
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 232 ggcatggggtgaccagatcgg 252
>ref|XM_466220.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3110
Score = 426 bits (215), Expect = e-117
Identities = 353/399 (88%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 363 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 422
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacagcttgaagcatcta 381
|||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 423 gccaaggcgaattggtttactacttcccccagggccatatggaacagcttgaggcatcta 482
Query: 382 cagatcaacaacttgatcagcacttacctttgtttgatctaccacccaagattctctgca 441
|||| ||||| ||||| ||||| | ||||||||| | || ||| | ||||| |||||||
Sbjct: 483 cagaccaacagcttgaccagcatctgcctttgtttaacctgccatctaagatcctctgca 542
Query: 442 aggtggtcaatgtagaacttagagctgaaactgattctgatgaagtttatgctcaaatta 501
| |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 543 aagtggtcaatgtagaacttagggctgaaaccgattcagatgaggtttatgctcaaatta 602
Query: 502 tgctgcaaccagaagcagatcaaagtgagcccaccagcccagattctgagccaccggagc 561
|||||||||||||||||||||||| ||| | |||||||||| | ||||||||| || |
Sbjct: 603 tgctgcaaccagaagcagatcaaaatgaactcaccagcccaaaacctgagccacatgaac 662
Query: 562 ctgaaagatgcaacgtctattccttctgcaagaccttgactgcttcagatacaagtaccc 621
|||||| |||||| ||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 663 ctgaaaaatgcaatgtccattccttctgcaagactttgactgcttcagatacaagcaccc 722
Query: 622 atggtggattctctgtcctcaggaggcatgctgaagaat 660
|||||||||| || || || ||||||||||| |||||||
Sbjct: 723 atggtggattttcagttcttaggaggcatgcagaagaat 761
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 232 ggcatggggtgaccagatcgg 252
>dbj|AK064925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N16, full
insert sequence
Length = 2973
Score = 155 bits (78), Expect = 4e-035
Identities = 210/254 (82%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 471 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 530
Query: 345 ttcccacagggtcatatggaacagcttgaagcatctacagatcaacaacttgatcagcac 404
|| || ||||||||||||||||||||||| || |||||| | || || ||||| ||| ||
Sbjct: 531 tttccccagggtcatatggaacagcttgaggcgtctacaaaccagcagcttgaccagtac 590
Query: 405 ttacctttgtttgatctaccacccaagattctctgcaaggtggtcaatgtagaacttaga 464
| || |||| |||||||| ||||||| || |||| |||||||| |||||||| |
Sbjct: 591 ctgccgatgttcaatctaccatccaagatcctatgcagcgtggtcaacgtagaactccgg 650
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagatcaa 524
|| || ||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 651 gcggaggctgattcagatgaagtttatgctcaaattatgctgcaaccagaagctgatcaa 710
Query: 525 agtgagcccaccag 538
||||| | ||||||
Sbjct: 711 agtgaactcaccag 724
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 766 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 825
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 826 ttaggaggcatgctgaagaat 846
>ref|XM_472625.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5022
Score = 155 bits (78), Expect = 4e-035
Identities = 210/254 (82%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 64 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 123
Query: 345 ttcccacagggtcatatggaacagcttgaagcatctacagatcaacaacttgatcagcac 404
|| || ||||||||||||||||||||||| || |||||| | || || ||||| ||| ||
Sbjct: 124 tttccccagggtcatatggaacagcttgaggcgtctacaaaccagcagcttgaccagtac 183
Query: 405 ttacctttgtttgatctaccacccaagattctctgcaaggtggtcaatgtagaacttaga 464
| || |||| |||||||| ||||||| || |||| |||||||| |||||||| |
Sbjct: 184 ctgccgatgttcaatctaccatccaagatcctatgcagcgtggtcaacgtagaactccgg 243
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagatcaa 524
|| || ||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 244 gcggaggctgattcagatgaagtttatgctcaaattatgctgcaaccagaagctgatcaa 303
Query: 525 agtgagcccaccag 538
||||| | ||||||
Sbjct: 304 agtgaactcaccag 317
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 359 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 418
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 419 ttaggaggcatgctgaagaat 439
>dbj|AP004793.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0506A08, ***
SEQUENCING IN PROGRESS ***
Length = 144983
Score = 141 bits (71), Expect = 5e-031
Identities = 98/107 (91%)
Strand = Plus / Minus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 78114 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 78055
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
|||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 78054 gccaaggcgaattggtttactacttcccccagggccatatggaacag 78008
Score = 127 bits (64), Expect = 8e-027
Identities = 112/128 (87%)
Strand = Plus / Minus
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
|||||||||| | ||||||||| || ||||||| |||||| ||| |||||||||||||
Sbjct: 77275 caccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaa 77216
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||| |||||||||||||||||||| |||||||||||||| || || || |||||||||||
Sbjct: 77215 gactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgc 77156
Query: 653 tgaagaat 660
|||||||
Sbjct: 77155 agaagaat 77148
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagat 521
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 77557 gctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagat 77501
Score = 81.8 bits (41), Expect = 4e-013
Identities = 83/97 (85%)
Strand = Plus / Minus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
||||||| ||||||||||| ||||| ||||| ||||| | ||||||||| | || |||
Sbjct: 77786 agcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccat 77727
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttag 463
| ||||| |||||||| ||||||||||||||||||||
Sbjct: 77726 ctaagatcctctgcaaagtggtcaatgtagaacttag 77690
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 79019 ggcatggggtgaccagatcgg 78999
>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0038F20
Length = 129595
Score = 141 bits (71), Expect = 5e-031
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 25435 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 25494
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
|||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 25495 gccaaggcgaattggtttactacttcccccagggccatatggaacag 25541
Score = 127 bits (64), Expect = 8e-027
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
|||||||||| | ||||||||| || ||||||| |||||| ||| |||||||||||||
Sbjct: 26274 caccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaa 26333
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||| |||||||||||||||||||| |||||||||||||| || || || |||||||||||
Sbjct: 26334 gactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgc 26393
Query: 653 tgaagaat 660
|||||||
Sbjct: 26394 agaagaat 26401
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagat 521
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 25992 gctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagat 26048
Score = 81.8 bits (41), Expect = 4e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
||||||| ||||||||||| ||||| ||||| ||||| | ||||||||| | || |||
Sbjct: 25763 agcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccat 25822
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttag 463
| ||||| |||||||| ||||||||||||||||||||
Sbjct: 25823 ctaagatcctctgcaaagtggtcaatgtagaacttag 25859
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 24530 ggcatggggtgaccagatcgg 24550
>gb|AACV01004674.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004674, whole
genome shotgun sequence
Length = 38624
Score = 141 bits (71), Expect = 5e-031
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 34150 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 34209
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
|||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 34210 gccaaggcgaattggtttactacttcccccagggccatatggaacag 34256
Score = 127 bits (64), Expect = 8e-027
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
|||||||||| | ||||||||| || ||||||| |||||| ||| |||||||||||||
Sbjct: 34989 caccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaa 35048
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||| |||||||||||||||||||| |||||||||||||| || || || |||||||||||
Sbjct: 35049 gactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgc 35108
Query: 653 tgaagaat 660
|||||||
Sbjct: 35109 agaagaat 35116
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagat 521
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 34707 gctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagat 34763
Score = 81.8 bits (41), Expect = 4e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
||||||| ||||||||||| ||||| ||||| ||||| | ||||||||| | || |||
Sbjct: 34478 agcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccat 34537
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttag 463
| ||||| |||||||| ||||||||||||||||||||
Sbjct: 34538 ctaagatcctctgcaaagtggtcaatgtagaacttag 34574
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 33245 ggcatggggtgaccagatcgg 33265
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 141 bits (71), Expect = 5e-031
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 2302961 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 2303020
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
|||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 2303021 gccaaggcgaattggtttactacttcccccagggccatatggaacag 2303067
Score = 127 bits (64), Expect = 8e-027
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
|||||||||| | ||||||||| || ||||||| |||||| ||| |||||||||||||
Sbjct: 2303800 caccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaa 2303859
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||| |||||||||||||||||||| |||||||||||||| || || || |||||||||||
Sbjct: 2303860 gactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgc 2303919
Query: 653 tgaagaat 660
|||||||
Sbjct: 2303920 agaagaat 2303927
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagat 521
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2303518 gctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagat 2303574
Score = 81.8 bits (41), Expect = 4e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
||||||| ||||||||||| ||||| ||||| ||||| | ||||||||| | || |||
Sbjct: 2303289 agcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccat 2303348
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttag 463
| ||||| |||||||| ||||||||||||||||||||
Sbjct: 2303349 ctaagatcctctgcaaagtggtcaatgtagaacttag 2303385
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 2302056 ggcatggggtgaccagatcgg 2302076
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 141 bits (71), Expect = 5e-031
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 7528141 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 7528200
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
|||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 7528201 gccaaggcgaattggtttactacttcccccagggccatatggaacag 7528247
Score = 127 bits (64), Expect = 8e-027
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
|||||||||| | ||||||||| || ||||||| |||||| ||| |||||||||||||
Sbjct: 7528980 caccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaa 7529039
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||| |||||||||||||||||||| |||||||||||||| || || || |||||||||||
Sbjct: 7529040 gactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgc 7529099
Query: 653 tgaagaat 660
|||||||
Sbjct: 7529100 agaagaat 7529107
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagat 521
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 7528698 gctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagat 7528754
Score = 81.8 bits (41), Expect = 4e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
||||||| ||||||||||| ||||| ||||| ||||| | ||||||||| | || |||
Sbjct: 7528469 agcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccat 7528528
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttag 463
| ||||| |||||||| ||||||||||||||||||||
Sbjct: 7528529 ctaagatcctctgcaaagtggtcaatgtagaacttag 7528565
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 7527236 ggcatggggtgaccagatcgg 7527256
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 141 bits (71), Expect = 5e-031
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 20981205 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 20981264
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
|||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 20981265 gccaaggcgaattggtttactacttcccccagggccatatggaacag 20981311
Score = 127 bits (64), Expect = 8e-027
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
|||||||||| | ||||||||| || ||||||| |||||| ||| |||||||||||||
Sbjct: 20982044 caccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaa 20982103
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||| |||||||||||||||||||| |||||||||||||| || || || |||||||||||
Sbjct: 20982104 gactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgc 20982163
Query: 653 tgaagaat 660
|||||||
Sbjct: 20982164 agaagaat 20982171
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagat 521
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 20981762 gctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagat 20981818
Score = 81.8 bits (41), Expect = 4e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
||||||| ||||||||||| ||||| ||||| ||||| | ||||||||| | || |||
Sbjct: 20981533 agcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccat 20981592
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttag 463
| ||||| |||||||| ||||||||||||||||||||
Sbjct: 20981593 ctaagatcctctgcaaagtggtcaatgtagaacttag 20981629
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 3576835 acaagtacacatggtggattctctgt 3576860
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 20980300 ggcatggggtgaccagatcgg 20980320
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 609 gatacaagtacccatggtggattctctgt 637
||||||||||| ||||| |||||||||||
Sbjct: 2238373 gatacaagtacacatggaggattctctgt 2238345
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 141 bits (71), Expect = 5e-031
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 262 gcgatgctttgttcagggaactctggcatgcttgtgctgggccgttggtcacagtgcctc 321
||||||| |||| |||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct: 21118719 gcgatgcgttgtacagggagctatggcatgcttgcgctgggccgttggtcacagtgcctc 21118778
Query: 322 gccaaggcgagctggtttactacttcccacagggtcatatggaacag 368
|||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 21118779 gccaaggcgaattggtttactacttcccccagggccatatggaacag 21118825
Score = 127 bits (64), Expect = 8e-027
Identities = 112/128 (87%)
Strand = Plus / Plus
Query: 533 caccagcccagattctgagccaccggagcctgaaagatgcaacgtctattccttctgcaa 592
|||||||||| | ||||||||| || ||||||| |||||| ||| |||||||||||||
Sbjct: 21119558 caccagcccaaaacctgagccacatgaacctgaaaaatgcaatgtccattccttctgcaa 21119617
Query: 593 gaccttgactgcttcagatacaagtacccatggtggattctctgtcctcaggaggcatgc 652
||| |||||||||||||||||||| |||||||||||||| || || || |||||||||||
Sbjct: 21119618 gactttgactgcttcagatacaagcacccatggtggattttcagttcttaggaggcatgc 21119677
Query: 653 tgaagaat 660
|||||||
Sbjct: 21119678 agaagaat 21119685
Score = 89.7 bits (45), Expect = 2e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 465 gctgaaactgattctgatgaagtttatgctcaaattatgctgcaaccagaagcagat 521
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 21119276 gctgaaaccgattcagatgaggtttatgctcaaattatgctgcaaccagaagcagat 21119332
Score = 81.8 bits (41), Expect = 4e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 367 agcttgaagcatctacagatcaacaacttgatcagcacttacctttgtttgatctaccac 426
||||||| ||||||||||| ||||| ||||| ||||| | ||||||||| | || |||
Sbjct: 21119047 agcttgaggcatctacagaccaacagcttgaccagcatctgcctttgtttaacctgccat 21119106
Query: 427 ccaagattctctgcaaggtggtcaatgtagaacttag 463
| ||||| |||||||| ||||||||||||||||||||
Sbjct: 21119107 ctaagatcctctgcaaagtggtcaatgtagaacttag 21119143
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 3489047 acaagtacacatggtggattctctgt 3489072
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 153 ggcatggggtgaccagatcgg 173
|||||||||||||||||||||
Sbjct: 21117814 ggcatggggtgaccagatcgg 21117834
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 609 gatacaagtacccatggtggattctctgt 637
||||||||||| ||||| |||||||||||
Sbjct: 2212630 gatacaagtacacatggaggattctctgt 2212602
>emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064D20,
complete sequence
Length = 99855
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagc 517
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 88807 ctgattcagatgaagtttatgctcaaattatgctgcaaccagaagc 88852
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 89097 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 89156
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 89157 ttaggaggcatgctgaagaat 89177
Score = 56.0 bits (28), Expect = 2e-005
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 88373 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 88432
Query: 345 ttcccacagggtcatatggaacag 368
|| || ||||||||||||||||||
Sbjct: 88433 tttccccagggtcatatggaacag 88456
>gb|AACV01009842.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009842, whole
genome shotgun sequence
Length = 12438
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagc 517
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5920 ctgattcagatgaagtttatgctcaaattatgctgcaaccagaagc 5965
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 6210 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 6269
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 6270 ttaggaggcatgctgaagaat 6290
Score = 56.0 bits (28), Expect = 2e-005
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 5486 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 5545
Query: 345 ttcccacagggtcatatggaacag 368
|| || ||||||||||||||||||
Sbjct: 5546 tttccccagggtcatatggaacag 5569
>ref|NT_079861.2| Oryza sativa (japonica cultivar-group)
Length = 705050
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagc 517
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 666078 ctgattcagatgaagtttatgctcaaattatgctgcaaccagaagc 666123
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 666368 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 666427
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 666428 ttaggaggcatgctgaagaat 666448
Score = 56.0 bits (28), Expect = 2e-005
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 665644 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 665703
Query: 345 ttcccacagggtcatatggaacag 368
|| || ||||||||||||||||||
Sbjct: 665704 tttccccagggtcatatggaacag 665727
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagc 517
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11758885 ctgattcagatgaagtttatgctcaaattatgctgcaaccagaagc 11758930
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 11759175 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 11759234
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 11759235 ttaggaggcatgctgaagaat 11759255
Score = 56.0 bits (28), Expect = 2e-005
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 11758451 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 11758510
Query: 345 ttcccacagggtcatatggaacag 368
|| || ||||||||||||||||||
Sbjct: 11758511 tttccccagggtcatatggaacag 11758534
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagc 517
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 19106247 ctgattcagatgaagtttatgctcaaattatgctgcaaccagaagc 19106292
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 19106537 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 19106596
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 19106597 ttaggaggcatgctgaagaat 19106617
Score = 56.0 bits (28), Expect = 2e-005
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 19105813 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 19105872
Query: 345 ttcccacagggtcatatggaacag 368
|| || ||||||||||||||||||
Sbjct: 19105873 tttccccagggtcatatggaacag 19105896
>emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0076O17, complete
sequence
Length = 121130
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagc 517
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 82158 ctgattcagatgaagtttatgctcaaattatgctgcaaccagaagc 82203
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 82448 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 82507
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 82508 ttaggaggcatgctgaagaat 82528
Score = 56.0 bits (28), Expect = 2e-005
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 81724 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 81783
Query: 345 ttcccacagggtcatatggaacag 368
|| || ||||||||||||||||||
Sbjct: 81784 tttccccagggtcatatggaacag 81807
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 83.8 bits (42), Expect = 1e-013
Identities = 45/46 (97%)
Strand = Plus / Plus
Query: 472 ctgattctgatgaagtttatgctcaaattatgctgcaaccagaagc 517
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 22016236 ctgattcagatgaagtttatgctcaaattatgctgcaaccagaagc 22016281
Score = 81.8 bits (41), Expect = 4e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 580 attccttctgcaagaccttgactgcttcagatacaagtacccatggtggattctctgtcc 639
||||||| |||||||| || || |||||||||||||| || ||||| || |||||||| |
Sbjct: 22016526 attccttttgcaagacattaacagcttcagatacaagcacacatggcggtttctctgttc 22016585
Query: 640 tcaggaggcatgctgaagaat 660
| |||||||||||||||||||
Sbjct: 22016586 ttaggaggcatgctgaagaat 22016606
Score = 56.0 bits (28), Expect = 2e-005
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 285 tggcatgcttgtgctgggccgttggtcacagtgcctcgccaaggcgagctggtttactac 344
||||||||||||||||| ||||||||||| || || | ||||||| || ||||||
Sbjct: 22015802 tggcatgcttgtgctggtccgttggtcacggtcccgaagcgcggcgagcgcgtctactac 22015861
Query: 345 ttcccacagggtcatatggaacag 368
|| || ||||||||||||||||||
Sbjct: 22015862 tttccccagggtcatatggaacag 22015885
>dbj|AK066725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074M13, full
insert sequence
Length = 3235
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 573 acaagtacacatggtggattctctgt 598
>dbj|AK070569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056C15, full
insert sequence
Length = 3885
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 1195 acaagtacacatggtggattctctgt 1220
>dbj|AP004093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1661_C12
Length = 122214
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 101870 acaagtacacatggtggattctctgt 101895
>dbj|AP004863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0023I17
Length = 141852
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 33842 acaagtacacatggtggattctctgt 33867
>gb|AACV01003410.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003410, whole
genome shotgun sequence
Length = 40342
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 12806 acaagtacacatggtggattctctgt 12831
>ref|XM_464221.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3236
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 573 acaagtacacatggtggattctctgt 598
>ref|XM_506725.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1661_C12.26 mRNA
Length = 3885
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 1195 acaagtacacatggtggattctctgt 1220
>ref|NT_107176.1| Oryza sativa (japonica cultivar-group)
Length = 1593847
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 454895 acaagtacacatggtggattctctgt 454920
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 612 acaagtacccatggtggattctctgt 637
|||||||| |||||||||||||||||
Sbjct: 3576835 acaagtacacatggtggattctctgt 3576860
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 609 gatacaagtacccatggtggattctctgt 637
||||||||||| ||||| |||||||||||
Sbjct: 2238373 gatacaagtacacatggaggattctctgt 2238345
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1679_B08
Length = 142529
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 609 gatacaagtacccatggtggattctctgt 637
||||||||||| ||||| |||||||||||
Sbjct: 127323 gatacaagtacacatggaggattctctgt 127295
>gb|AACV01003315.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003315, whole
genome shotgun sequence
Length = 41821
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 609 gatacaagtacccatggtggattctctgt 637
||||||||||| ||||| |||||||||||
Sbjct: 32189 gatacaagtacacatggaggattctctgt 32217
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3420
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 609 gatacaagtacccatggtggattctctgt 637
||||||||||| ||||| |||||||||||
Sbjct: 457 gatacaagtacacatggaggattctctgt 485
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 42.1 bits (21), Expect = 0.37
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 609 gatacaagtacccatggtggattctctgt 637
||||||||||| ||||| |||||||||||
Sbjct: 2212630 gatacaagtacacatggaggattctctgt 2212602
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 938,058
Number of Sequences: 438736
Number of extensions: 938058
Number of successful extensions: 5932
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5719
Number of HSP's gapped (non-prelim): 211
length of query: 660
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 639
effective length of database: 2,791,206,460
effective search space: 1783580927940
effective search space used: 1783580927940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)