BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750463.2.1
(678 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA... 394 e-107
dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA... 394 e-107
gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (ja... 319 1e-084
gb|AU183876.1|AU183876 AU183876 Rice cDNA from immature lea... 283 6e-074
dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA... 283 6e-074
dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA... 283 6e-074
gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (ja... 281 2e-073
gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (j... 276 1e-071
gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (j... 276 1e-071
gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing... 242 2e-061
gb|BP432965.1|BP432965 BP432965 Oryza sativa (japonica cult... 230 8e-058
gb|AU222632.1|AU222632 AU222632 Rice cDNA from immature lea... 218 3e-054
gb|CB648189.1|CB648189 OSJNEb11H13.f OSJNEb Oryza sativa (j... 218 3e-054
gb|CB650792.1|CB650792 OSJNEb15H04.f OSJNEb Oryza sativa (j... 218 3e-054
gb|CB655758.1|CB655758 OSJNEc09H12.f OSJNEc Oryza sativa (j... 218 3e-054
gb|CB658953.1|CB658953 OSJNEc15H06.f OSJNEc Oryza sativa (j... 218 3e-054
dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA... 218 3e-054
gb|CB656073.1|CB656073 OSJNEc09P24.f OSJNEc Oryza sativa (j... 210 7e-052
gb|AU222683.1|AU222683 AU222683 Rice shoot Oryza sativa (ja... 200 7e-049
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 194 4e-047
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 194 4e-047
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 194 4e-047
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 194 4e-047
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 194 4e-047
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 194 4e-047
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 194 4e-047
dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA... 190 7e-046
ref|XM_473793.1| Oryza sativa (japonica cultivar-group), p... 190 7e-046
gb|C25186.1|C25186 C25186 Rice shoot Oryza sativa (japonica... 188 3e-045
gb|AU183250.1|AU183250 AU183250 Rice cDNA from immature lea... 180 6e-043
gb|C25181.1|C25181 C25181 Rice shoot Oryza sativa (japonica... 178 3e-042
gb|AU183242.1|AU183242 AU183242 Rice cDNA from immature lea... 165 4e-038
gb|AQ578490.1|AQ578490 nbxb0093C13r CUGI Rice BAC Library O... 163 2e-037
gb|AY873214.1|AY873214 04ET3_387_C_072_000_001C08 Oryza sat... 163 2e-037
gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) c... 137 9e-030
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 137 9e-030
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 137 9e-030
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 137 9e-030
emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromoso... 137 9e-030
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 137 9e-030
gb|AU225192.1|AU225192 AU225192 Oryza sativa Koshihikari pi... 135 3e-029
gb|C25353.1|C25353 C25353 Rice shoot Oryza sativa (japonica... 133 1e-028
gb|C28350.1|C28350 C28350 Rice callus cDNA Oryza sativa (ja... 129 2e-027
gb|AQ861400.1|AQ861400 nbeb0016H04r CUGI Rice BAC Library (... 127 8e-027
gb|CB651562.1|CB651562 OSJNEb16J04.f OSJNEb Oryza sativa (j... 123 1e-025
gb|CB655114.1|CB655114 OSJNEc08D08.f OSJNEc Oryza sativa (j... 123 1e-025
gb|D16085.1|D16085 RICC3021A Rice callus Oryza sativa (japo... 121 5e-025
gb|AU063923.1|AU063923 AU063923 Rice panicle at flowering s... 111 5e-022
gb|CB652674.1|CB652674 OSJNEc02O21.f OSJNEc Oryza sativa (j... 101 5e-019
dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA... 101 5e-019
gb|CB650793.1|CB650793 OSJNEb15H04.r OSJNEb Oryza sativa (j... 100 2e-018
gb|AU063995.2|AU063995 AU063995 Rice panicle at flowering s... 98 7e-018
gb|AU063993.1|AU063993 AU063993 Rice panicle at flowering s... 94 1e-016
gb|D40760.1|D40760 RICS2904A Rice shoot Oryza sativa (japon... 90 2e-015
gb|AQ916489.1|AQ916489 nbeb0065O07r CUGI Rice BAC Library (... 88 7e-015
gb|AU222739.1|AU222739 AU222739 Rice shoot Oryza sativa (ja... 88 7e-015
gb|CF325257.1|CF325257 JMT1--02-L23.g1 AtJMT-overexpressing... 88 7e-015
dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA... 88 7e-015
dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA... 88 7e-015
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 88 7e-015
gb|AACV01017696.1| Oryza sativa (japonica cultivar-group) c... 88 7e-015
ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA 88 7e-015
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 88 7e-015
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 88 7e-015
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 88 7e-015
gb|D39971.1|D39971 RICS1669A Rice shoot Oryza sativa (japon... 86 3e-014
dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
ref|XM_473788.1| Oryza sativa (japonica cultivar-group), p... 86 3e-014
emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromoso... 86 3e-014
gb|D40243.1|D40243 RICS2076A Rice shoot Oryza sativa (japon... 82 4e-013
gb|AU161551.1|AU161551 AU161551 Rice shoot Oryza sativa (ja... 82 4e-013
gb|AU222867.1|AU222867 AU222867 Rice shoot Oryza sativa (ja... 82 4e-013
gb|AU063990.2|AU063990 AU063990 Rice panicle at flowering s... 80 2e-012
ref|XM_473792.1| Oryza sativa (japonica cultivar-group), p... 80 2e-012
dbj|AP004872.2| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP005398.3| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|AACV01003896.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 74 1e-010
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|D39780.1|D39780 RICS1371A Rice shoot Oryza sativa (japon... 72 4e-010
gb|D39807.1|D39807 RICS1411A Rice shoot Oryza sativa (japon... 72 4e-010
gb|CB658472.1|CB658472 OSJNEc14I12.f OSJNEc Oryza sativa (j... 72 4e-010
gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing ... 72 4e-010
gb|CF324737.1|CF324737 JMT1--01-F11.g1 AtJMT-overexpressing... 72 4e-010
gb|CV722395.1|CV722395 YTPSP--01-A08.b1 TPSP-overexpression... 72 4e-010
dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 72 4e-010
ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-... 72 4e-010
dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXR... 72 4e-010
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|D24203.1|D24203 RICR1522A Rice root Oryza sativa (japoni... 70 2e-009
gb|CB648710.1|CB648710 OSJNEb12D18.f OSJNEb Oryza sativa (j... 70 2e-009
gb|CB661481.1|CB661481 OSJNEd04G16.f OSJNEd Oryza sativa (j... 70 2e-009
gb|CF308277.1|CF308277 ABF--02-A16.b1 ABF3-overexpressing t... 70 2e-009
dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 66 3e-008
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 66 3e-008
dbj|AP004784.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AACV01013814.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
gb|AACV01023313.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|D39510.1|D39510 RICS0891A Rice shoot Oryza sativa (japon... 64 1e-007
gb|CF324739.1|CF324739 JMT1--01-F13.g1 AtJMT-overexpressing... 64 1e-007
gb|AU067866.1|AU067866 AU067866 Rice callus Oryza sativa (j... 62 4e-007
gb|D41088.1|D41088 RICS3357A Rice shoot Oryza sativa (japon... 60 2e-006
gb|D21903.1|D21903 RICC10035A Rice callus Oryza sativa (jap... 60 2e-006
gb|AU066253.1|AU066253 AU066253 Rice shoot Oryza sativa (ja... 60 2e-006
dbj|AK063614.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AACV01010434.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|XM_473787.1| Oryza sativa (japonica cultivar-group), p... 60 2e-006
gb|D40632.1|D40632 RICS2719A Rice shoot Oryza sativa (japon... 56 3e-005
gb|C27146.1|C27146 C27146 Rice callus cDNA Oryza sativa (ja... 56 3e-005
gb|AU066184.1|AU066184 AU066184 Rice shoot Oryza sativa (ja... 56 3e-005
dbj|AK059277.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK061284.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK099331.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbar... 56 3e-005
gb|AACV01006176.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|AACV01010531.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 56 3e-005
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromoso... 56 3e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|D41305.1|D41305 RICS3696A Rice shoot Oryza sativa (japon... 54 1e-004
dbj|AP003953.1| Oryza sativa (japonica cultivar-group) chro... 52 4e-004
dbj|AP005430.1| Oryza sativa (japonica cultivar-group) chro... 52 4e-004
dbj|AK060495.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK073018.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK073731.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK111340.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK122079.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AP004886.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP005904.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP004674.2| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AACV01003252.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AACV01016440.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AACV01019905.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_450915.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|XM_463978.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|XM_478514.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|XM_478515.1| Oryza sativa (japonica cultivar-group), mRNA 52 4e-004
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 52 4e-004
dbj|AP005311.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 52 4e-004
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|DU168821.1|DU168821 UCDRdSpm767_3.1 UCD RdSpm Rice Inser... 50 0.002
gb|DU169063.1|DU169063 UCDRdSpm768_3.1 UCD RdSpm Rice Inser... 50 0.002
gb|D49161.1|D49161 RICS15861A Rice green shoot Oryza sativa... 50 0.002
gb|AU076005.1|AU076005 AU076005 Rice callus Oryza sativa (j... 50 0.002
gb|AU076006.1|AU076006 AU076006 Rice callus Oryza sativa (j... 50 0.002
gb|AU057309.2|AU057309 AU057309 Oryza sativa mature leaf Ni... 50 0.002
gb|CB642793.1|CB642793 OSJNEb03C15.f OSJNEb Oryza sativa (j... 50 0.002
gb|CB648190.1|CB648190 OSJNEb11H13.r OSJNEb Oryza sativa (j... 50 0.002
dbj|AK101915.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK105864.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AACV01005220.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_467280.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.002
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.002
ref|XM_506903.1| PREDICTED Oryza sativa (japonica cultivar-... 50 0.002
dbj|AP005859.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|DU168784.1|DU168784 UCDRdSpm768A_3.1 UCD RdSpm Rice Inse... 48 0.006
gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japon... 48 0.006
gb|C25954.1|C25954 C25954 Rice callus cDNA Oryza sativa (ja... 48 0.006
dbj|AP003839.1| Oryza sativa (japonica cultivar-group) chro... 48 0.006
dbj|AK061126.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK104060.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
dbj|AK119538.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AC113930.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|AACV01016188.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
ref|NM_187323.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.006
ref|NM_187656.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 48 0.006
dbj|AP004299.2| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|CB667671.1|CB667671 OSJNEd15B19.f OSJNEd Oryza sativa (j... 46 0.025
dbj|AP004682.1| Oryza sativa (japonica cultivar-group) chro... 46 0.025
dbj|AK071886.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK073730.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
dbj|AK104577.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O1... 46 0.025
dbj|AP003510.3| Oryza sativa (japonica cultivar-group) geno... 46 0.025
dbj|AP006056.3| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|AACV01005768.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01008282.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01013223.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
gb|AACV01022039.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
ref|NM_197613.1| Oryza sativa (japonica cultivar-group) put... 46 0.025
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 46 0.025
ref|XM_470453.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.025
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 46 0.025
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 46 0.025
gb|AC134236.4| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|AC120506.5| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|AU068851.1|AU068851 AU068851 Rice callus Oryza sativa (j... 44 0.097
dbj|AP004841.1| Oryza sativa (japonica cultivar-group) chro... 44 0.097
dbj|AK063216.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.097
dbj|AP004026.3| Oryza sativa (japonica cultivar-group) geno... 44 0.097
dbj|AP003989.4| Oryza sativa (japonica cultivar-group) geno... 44 0.097
gb|AACV01004200.1| Oryza sativa (japonica cultivar-group) c... 44 0.097
gb|AACV01005666.1| Oryza sativa (japonica cultivar-group) c... 44 0.097
gb|AACV01025741.1| Oryza sativa (japonica cultivar-group) C... 44 0.097
ref|XM_465430.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.097
ref|XM_468468.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.097
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 44 0.097
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 44 0.097
dbj|AP004816.3| Oryza sativa (japonica cultivar-group) geno... 44 0.097
gb|CH401310.1| Oryza sativa (japonica cultivar-group) scaff... 44 0.097
gb|DU168656.1|DU168656 UCDRdSpm819B_3.1 UCD RdSpm Rice Inse... 42 0.38
gb|C91679.1|C91679 C91679 Rice panicle shorter than 3cm Ory... 42 0.38
dbj|AK065680.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
dbj|AK071679.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
gb|AC120983.6| Oryza sativa chromosome 3 BAC OSJNBb0011H13 ... 42 0.38
gb|AC104277.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|AACV01000247.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01007852.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01010865.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
dbj|AP003209.3| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 42 0.38
ref|XM_469614.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.38
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 42 0.38
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 42 0.38
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 42 0.38
gb|AC105262.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 42 0.38
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full
insert sequence
Length = 1208
Score = 394 bits (199), Expect = e-107
Identities = 427/503 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 157 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 216
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 217 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 276
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 277 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 336
Query: 356 aactccgctggcacggtcaccaccttctacctgtcgtcccagggcgacgcgcacgacgag 415
|||||||| ||||| ||||||||||||||| ||||||| ||||| | ||||| |||
Sbjct: 337 aactccgccggcaccgtcaccaccttctacttgtcgtcgcagggttcgacccacgatgag 396
Query: 416 atcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgtg 475
|||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 397 atcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcacaccaacgtg 456
Query: 476 ttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctaccact 535
||||||| || ||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 457 ttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgaccccacccag 516
Query: 536 gccttccacacctactccatcctgtggaacccgcagcacgtgatcttcgcggtggacggc 595
|||||||||||||||||||| | |||||||| |||||||| || ||||||||||||||
Sbjct: 517 tccttccacacctactccatcatctggaacccacagcacgtcatattcgcggtggacggg 576
Query: 596 accccggtgcgggacttcaagaaccacgaggcgcgcggggtggcgttcccgaggatgcag 655
|| ||| | |||||||||||||||||||||| || || ||||||||||| | || |||
Sbjct: 577 acaccgatcagggacttcaagaaccacgaggcccgtggcgtggcgttccccaagagccag 636
Query: 656 cccatgaggctgtacgccagcct 678
|| ||| || ||||||| |||||
Sbjct: 637 ccgatgcgggtgtacgcgagcct 659
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full
insert sequence
Length = 1208
Score = 394 bits (199), Expect = e-107
Identities = 427/503 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 157 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 216
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 217 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 276
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 277 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 336
Query: 356 aactccgctggcacggtcaccaccttctacctgtcgtcccagggcgacgcgcacgacgag 415
|||||||| ||||| ||||||||||||||| ||||||| ||||| | ||||| |||
Sbjct: 337 aactccgccggcaccgtcaccaccttctacttgtcgtcgcagggttcgacccacgatgag 396
Query: 416 atcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgtg 475
|||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 397 atcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcacaccaacgtg 456
Query: 476 ttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctaccact 535
||||||| || ||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 457 ttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgaccccacccag 516
Query: 536 gccttccacacctactccatcctgtggaacccgcagcacgtgatcttcgcggtggacggc 595
|||||||||||||||||||| | |||||||| |||||||| || ||||||||||||||
Sbjct: 517 tccttccacacctactccatcatctggaacccacagcacgtcatattcgcggtggacggg 576
Query: 596 accccggtgcgggacttcaagaaccacgaggcgcgcggggtggcgttcccgaggatgcag 655
|| ||| | |||||||||||||||||||||| || || ||||||||||| | || |||
Sbjct: 577 acaccgatcagggacttcaagaaccacgaggcccgtggcgtggcgttccccaagagccag 636
Query: 656 cccatgaggctgtacgccagcct 678
|| ||| || ||||||| |||||
Sbjct: 637 ccgatgcgggtgtacgcgagcct 659
>gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5538, mRNA sequence
Length = 385
Score = 319 bits (161), Expect = 1e-084
Identities = 308/357 (86%)
Strand = Plus / Plus
Query: 322 caagatcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccacctt 381
|||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||
Sbjct: 1 caagatcgacatgcagatcaagctcgtccccggcaactccgccggcaccgtcaccacctt 60
Query: 382 ctacctgtcgtcccagggcgacgcgcacgacgagatcgacttcgagttcctgggcaacgt 441
|||| ||||||| ||||| | ||||| ||||||||||||||||||||||| |||||
Sbjct: 61 ctacttgtcgtcgcagggttcgacccacgatgagatcgacttcgagttcctggggaacgt 120
Query: 442 gagcggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcggga 501
|| ||| ||||| |||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct: 121 gaccggcgagccgtacacgctgcacaccaacgtgttcacgcaggggcaggggcagcgcga 180
Query: 502 gcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctgtg 561
||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||
Sbjct: 181 gcagcagttccgcctctggttcgaccccacccagtccttccacacctactccatcatctg 240
Query: 562 gaacccgcagcacgtgatcttcgcggtggacggcaccccggtgcgggacttcaagaacca 621
|||||| |||||||| || |||||||||||||| || ||| | ||||||||||||||||
Sbjct: 241 gaacccacagcacgtcatattcgcggtggacgggacaccgatcagggacttcaagaacca 300
Query: 622 cgaggcgcgcggggtggcgttcccgaggatgcagcccatgaggctgtacgccagcct 678
|||||| || || ||||||||||| | || ||||| ||| || ||||||| |||||
Sbjct: 301 cgaggcccgtggcgtggcgttccccaagagccagccgatgcgggtgtacgcgagcct 357
>gb|AU183876.1|AU183876 AU183876 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60049, mRNA sequence
Length = 637
Score = 283 bits (143), Expect = 6e-074
Identities = 265/303 (87%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 250 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 309
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 310 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 369
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || ||||||||||||||||||||||| || ||||
Sbjct: 370 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcgagttcctggggaatgtgac 428
Query: 445 cggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcgggagca 504
||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 429 cggggagccgtacacgctgcacaccaacgtgttcacgcaggggcagggccagcgcgagat 488
Query: 505 gcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctgtggaa 564
||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |||||
Sbjct: 489 gcagttccgcctctggtacgaccccaccaaggacttccacacctactccatcctctggaa 548
Query: 565 ccc 567
|||
Sbjct: 549 ccc 551
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
insert sequence
Length = 1253
Score = 283 bits (143), Expect = 6e-074
Identities = 265/303 (87%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 254 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 313
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 314 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 373
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || ||||||||||||||||||||||| || ||||
Sbjct: 374 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcgagttcctggggaatgtgac 432
Query: 445 cggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcgggagca 504
||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 433 cggggagccgtacacgctgcacaccaacgtgttcacgcaggggcagggccagcgcgagat 492
Query: 505 gcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctgtggaa 564
||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |||||
Sbjct: 493 gcagttccgcctctggtacgaccccaccaaggacttccacacctactccatcctctggaa 552
Query: 565 ccc 567
|||
Sbjct: 553 ccc 555
>dbj|AK120345.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063H05, full
insert sequence
Length = 566
Score = 283 bits (143), Expect = 6e-074
Identities = 265/303 (87%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 264 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 323
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 324 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 383
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || ||||||||||||||||||||||| || ||||
Sbjct: 384 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcgagttcctggggaatgtgac 442
Query: 445 cggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcgggagca 504
||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 443 cggggagccgtacacgctgcacaccaacgtgttcacgcaggggcagggccagcgcgagat 502
Query: 505 gcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctgtggaa 564
||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |||||
Sbjct: 503 gcagttccgcctctggtacgaccccaccaaggacttccacacctactccatcctctggaa 562
Query: 565 ccc 567
|||
Sbjct: 563 ccc 565
>gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5527, mRNA sequence
Length = 367
Score = 281 bits (142), Expect = 2e-073
Identities = 280/326 (85%)
Strand = Plus / Plus
Query: 353 ggcaactccgctggcacggtcaccaccttctacctgtcgtcccagggcgacgcgcacgac 412
||||||||||| ||||| ||||||||||||||| ||||||| ||||| | |||||
Sbjct: 15 ggcaactccgccggcaccgtcaccaccttctacttgtcgtcgcagggttcgacccacgat 74
Query: 413 gagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaac 472
||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||||||||
Sbjct: 75 gagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcacaccaac 134
Query: 473 gtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctacc 532
|||||||||| || ||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 135 gtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgaccccacc 194
Query: 533 actgccttccacacctactccatcctgtggaacccgcagcacgtgatcttcgcggtggac 592
|||||||||||||||||||| | |||||||| |||||||| || ||||||||||||
Sbjct: 195 cagtccttccacacctactccatcatctggaacccacagcacgtcatattcgcggtggac 254
Query: 593 ggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcgttcccgaggatg 652
|| || ||| | |||||||||||||||||||||| || || ||||||||||| | ||
Sbjct: 255 gggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcgttccccaagagc 314
Query: 653 cagcccatgaggctgtacgccagcct 678
||||| ||| || ||||||| |||||
Sbjct: 315 cagccgatgcgggtgtacgcgagcct 340
>gb|CB671695.1|CB671695 OSJNEe05G07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05G07 5', mRNA sequence
Length = 753
Score = 276 bits (139), Expect = 1e-071
Identities = 264/303 (87%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 245 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 304
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 305 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 364
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || |||||||||||| |||||||||| || ||||
Sbjct: 365 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttctagttcctggggaatgtgac 423
Query: 445 cggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcgggagca 504
||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 424 cggggagccgtacacgctgcacaccaacgtgttcacgcaggggcagggccagcgcgagat 483
Query: 505 gcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctgtggaa 564
||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |||||
Sbjct: 484 gcagttccgcctctggtacgaccccaccaaggacttccacacctactccatcctctggaa 543
Query: 565 ccc 567
|||
Sbjct: 544 ccc 546
>gb|CB683062.1|CB683062 OSJNEf10P16.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10P16 5', mRNA sequence
Length = 669
Score = 276 bits (139), Expect = 1e-071
Identities = 264/303 (87%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 251 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 310
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 311 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 370
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || |||||||||||| |||||||||| || ||||
Sbjct: 371 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttccagttcctggggaatgtgac 429
Query: 445 cggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcgggagca 504
||||||||| |||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 430 cggggagccgtacacgctgcacaccaacgtgttcacgcaggggcagggccagcgcgagat 489
Query: 505 gcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctgtggaa 564
||||||||||||||||| |||||| |||| | ||||||||||||||||||||| |||||
Sbjct: 490 gcagttccgcctctggtacgaccccaccaaggacttccacacctactccatcctctggaa 549
Query: 565 ccc 567
|||
Sbjct: 550 ccc 552
>gb|CF325411.1|CF325411 JMT1--03-C17.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-C17, mRNA sequence
Length = 475
Score = 242 bits (122), Expect = 2e-061
Identities = 229/262 (87%), Gaps = 2/262 (0%)
Strand = Plus / Plus
Query: 307 cgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggcaactccgctgg 366
||||||||| | ||||||||||||||||||| ||||||| || || ||||||||||| ||
Sbjct: 11 cgagtacctctacggcaagatcgacatgcagctcaagctcgtccccggcaactccgccgg 70
Query: 367 cacggtcaccaccttctacctgtcgtcccagggcgacg-cgcacgacgagatcgacttcg 425
||| |||||| ||| |||| ||||||| ||||| | || |||| || |||||||||||||
Sbjct: 71 caccgtcaccgcctactacttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcg 129
Query: 426 agttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgtgttcacgcgcg 485
|||||||||| || |||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct: 130 agttcctggggaatgtgaccggggagccgtacacgctgcacaccaacgtgttcacgcagg 189
Query: 486 gacagggccagcgggagcagcagttccgcctctggttcgaccctaccactgccttccaca 545
| ||||||||||| ||| ||||||||||||||||| |||||| |||| | ||||||||
Sbjct: 190 ggcagggccagcgcgagatgcagttccgcctctggtacgaccccaccaaggacttccaca 249
Query: 546 cctactccatcctgtggaaccc 567
||||||||||||| ||||||||
Sbjct: 250 cctactccatcctctggaaccc 271
>gb|BP432965.1|BP432965 BP432965 Oryza sativa (japonica cultivar-group) whole plant
seedling Oryza sativa (japonica cultivar-group) cDNA
clone JRC0549, mRNA sequence
Length = 628
Score = 230 bits (116), Expect = 8e-058
Identities = 263/306 (85%), Gaps = 7/306 (2%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 255 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 314
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 315 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 374
Query: 386 ctgtcgtcccaggg--cgacgcgcacgacgagatcgacttcgagttcctgggcaacgtga 443
||||||| ||||| |||||| | || |||||||||||||||||||||| || ||||
Sbjct: 375 ttgtcgtcgcaggggccgacgcatatga--agatcgacttcgagttcctggggaatgtga 432
Query: 444 gcgggga-gccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcgggag 502
|||||| ||| |||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 433 ccggggaagccgtacacgctgcacaccaacgtgttcacgcaggggcagggccagcgcgag 492
Query: 503 cagcagttccgcctctggttcgaccctacc-actgccttccacacctactccatcctgtg 561
||||||||| ||||||| |||||| ||| | | ||||||||||||||||||||| ||
Sbjct: 493 atgcagttccg-ctctggtacgaccccaccaagggacttccacacctactccatcctctg 551
Query: 562 gaaccc 567
||||||
Sbjct: 552 gaaccc 557
>gb|AU222632.1|AU222632 AU222632 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60267, mRNA sequence
Length = 486
Score = 218 bits (110), Expect = 3e-054
Identities = 205/234 (87%), Gaps = 2/234 (0%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 249 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 308
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 309 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 368
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || ||||||||||||||||||||||| || ||||
Sbjct: 369 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcgagttcctggggaatgtgac 427
Query: 445 cggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcg 498
||||||||| |||||||||||||||||||||||||||| || |||||||||||
Sbjct: 428 cggggagccgtacacgctgcacaccaacgtgttcacgcaggggcagggccagcg 481
>gb|CB648189.1|CB648189 OSJNEb11H13.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11H13 5', mRNA sequence
Length = 701
Score = 218 bits (110), Expect = 3e-054
Identities = 247/290 (85%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 246 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 305
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagg 398
||||||| || || ||||||||||| ||||| ||| ||||||||||||||||||| ||||
Sbjct: 306 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcgcagg 365
Query: 399 gcgacgc-gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctac 457
| | ||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct: 366 g-gtcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtac 424
Query: 458 acgctgcacaccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctc 517
||| ||||||||||||||| || | || | ||| || ||||||||||||||| |
Sbjct: 425 acggtgcacaccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatg 484
Query: 518 tggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||||||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 485 tggttcgaccctaccaaggacttccacacttactccgtcctctggaaccc 534
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 151 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 202
>gb|CB650792.1|CB650792 OSJNEb15H04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15H04 5', mRNA sequence
Length = 787
Score = 218 bits (110), Expect = 3e-054
Identities = 247/290 (85%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 246 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 305
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagg 398
||||||| || || ||||||||||| ||||| ||| ||||||||||||||||||| ||||
Sbjct: 306 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcgcagg 365
Query: 399 gcgacgc-gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctac 457
| | ||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct: 366 g-gtcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtac 424
Query: 458 acgctgcacaccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctc 517
||| ||||||||||||||| || | || | ||| || ||||||||||||||| |
Sbjct: 425 acggtgcacaccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatg 484
Query: 518 tggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||||||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 485 tggttcgaccctaccaaggacttccacacttactccgtcctctggaaccc 534
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 151 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 202
>gb|CB655758.1|CB655758 OSJNEc09H12.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09H12 5', mRNA sequence
Length = 782
Score = 218 bits (110), Expect = 3e-054
Identities = 247/290 (85%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 246 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 305
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagg 398
||||||| || || ||||||||||| ||||| ||| ||||||||||||||||||| ||||
Sbjct: 306 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcgcagg 365
Query: 399 gcgacgc-gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctac 457
| | ||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct: 366 g-gtcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtac 424
Query: 458 acgctgcacaccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctc 517
||| ||||||||||||||| || | || | ||| || ||||||||||||||| |
Sbjct: 425 acggtgcacaccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatg 484
Query: 518 tggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||||||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 485 tggttcgaccctaccaaggacttccacacttactccgtcctctggaaccc 534
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 151 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 202
>gb|CB658953.1|CB658953 OSJNEc15H06.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15H06 5', mRNA sequence
Length = 695
Score = 218 bits (110), Expect = 3e-054
Identities = 247/290 (85%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 240 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 299
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagg 398
||||||| || || ||||||||||| ||||| ||| ||||||||||||||||||| ||||
Sbjct: 300 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcgcagg 359
Query: 399 gcgacgc-gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctac 457
| | ||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct: 360 g-gtcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtac 418
Query: 458 acgctgcacaccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctc 517
||| ||||||||||||||| || | || | ||| || ||||||||||||||| |
Sbjct: 419 acggtgcacaccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatg 478
Query: 518 tggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||||||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 479 tggttcgaccctaccaaggacttccacacttactccgtcctctggaaccc 528
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 145 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 196
>dbj|AK105934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B05, full
insert sequence
Length = 1101
Score = 218 bits (110), Expect = 3e-054
Identities = 247/290 (85%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 258 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 317
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagg 398
||||||| || || ||||||||||| ||||| ||| ||||||||||||||||||| ||||
Sbjct: 318 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcgcagg 377
Query: 399 gcgacgc-gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctac 457
| | ||| |||||||||||||||||||||||||||||| |||| |||||| ||||| |||
Sbjct: 378 g-gtcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtac 436
Query: 458 acgctgcacaccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctc 517
||| ||||||||||||||| || | || | ||| || ||||||||||||||| |
Sbjct: 437 acggtgcacaccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatg 496
Query: 518 tggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||||||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 497 tggttcgaccctaccaaggacttccacacttactccgtcctctggaaccc 546
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 163 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 214
>gb|CB656073.1|CB656073 OSJNEc09P24.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09P24 5', mRNA sequence
Length = 817
Score = 210 bits (106), Expect = 7e-052
Identities = 246/290 (84%), Gaps = 2/290 (0%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 239 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 298
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagg 398
||||||| || || ||||||||||| ||||| ||| ||||||||||||||||||| ||||
Sbjct: 299 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctacctgtcgtcgcagg 358
Query: 399 gcgacgc-gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctac 457
| | ||| ||||||||||||||||||| |||||||||| |||| |||||| ||||| |||
Sbjct: 359 g-gtcgcagcacgacgagatcgacttctagttcctggggaacgcgagcggcgagccgtac 417
Query: 458 acgctgcacaccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctc 517
||| ||||||||||||||| || | || | ||| || ||||||||||||||| |
Sbjct: 418 acggtgcacaccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatg 477
Query: 518 tggttcgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||||||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 478 tggttcgaccctaccaaggacttccacacttactccgtcctctggaaccc 527
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 144 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 195
>gb|AU222683.1|AU222683 AU222683 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S0011, mRNA sequence
Length = 290
Score = 200 bits (101), Expect = 7e-049
Identities = 226/265 (85%), Gaps = 3/265 (1%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 16 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 75
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggca-cggtcaccaccttcta 384
|||||||||||| ||||||| || || ||||||||||| |||| | |||||| ||| |||
Sbjct: 76 atcgacatgcagctcaagctcgtccccggcaactccgccggcacccgtcaccgcctacta 135
Query: 385 cctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtga 443
| ||||||| ||||| | || |||| || |||||||||||| |||||||||| || ||||
Sbjct: 136 cttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcnagttcctggggaatgtga 194
Query: 444 gcggggagccctacacgctgcacaccaacgtgttcacgcgcggacagggccagcgggagc 503
||||||||| ||||||||| ||||||||||||| |||| || ||||||||||| |||
Sbjct: 195 ccggggagccgtacacgctgtacaccaacgtgttnacgcaggggcagggccagcgcgaga 254
Query: 504 agcagttccgcctctggttcgaccc 528
|||| ||||||| |||| ||||||
Sbjct: 255 tgcagntccgcctntggtacgaccc 279
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 194 bits (98), Expect = 4e-047
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 6215459 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 6215518
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgac 526
|||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 6215519 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgac 6215578
Query: 527 cctaccactgccttccacacctactccatcctgtggaacccgcagcacgt 576
|| ||| |||||||||||||||||||| | |||||||| ||||||||
Sbjct: 6215579 cccacccagtccttccacacctactccatcatctggaacccacagcacgt 6215628
Score = 180 bits (91), Expect = 6e-043
Identities = 139/155 (89%)
Strand = Plus / Minus
Query: 413 gagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaac 472
||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||
Sbjct: 6239231 gagatcgacttcgagttcctggggaatgtgaccggggagccgtacacgctgcacaccaac 6239172
Query: 473 gtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctacc 532
|||||||||| || ||||||||||| ||| ||||||||||||||||| |||||| |||
Sbjct: 6239171 gtgttcacgcaggggcagggccagcgcgagatgcagttccgcctctggtacgaccccacc 6239112
Query: 533 actgccttccacacctactccatcctgtggaaccc 567
| | ||||||||||||||||||||| ||||||||
Sbjct: 6239111 aaggacttccacacctactccatcctctggaaccc 6239077
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 6215094 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 6215153
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 6215154 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 6215213
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 6215214 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 6215273
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 6215274 aactccgccggcaccgtcaccaccttctac 6215303
Score = 133 bits (67), Expect = 1e-028
Identities = 141/163 (86%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 6220198 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 6220257
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 6220258 caccaacatcttca-gcgacggcaagggcgagcgtgagcagcagttcgtgctctggttcg 6220316
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct: 6220317 accccaccgccgacttccacacctactccatcctctggaaccc 6220359
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 6227194 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 6227253
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 6227254 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 6227313
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 6227314 ccctaccaaggacttccacacttactccgtcctctggaaccc 6227355
Score = 119 bits (60), Expect = 2e-024
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 6239453 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 6239394
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 6239393 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 6239334
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 6226977 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 6227036
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 6227037 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 6227083
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 581 ttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcg 640
|||||||||||||| || ||| | |||||||||||||||||||||| || || ||||||
Sbjct: 6215755 ttcgcggtggacgggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcg 6215814
Query: 641 ttcccgaggatgcagcccatgaggctgtacgccagcct 678
||||| | || ||||| ||| || ||||||| |||||
Sbjct: 6215815 ttccccaagagccagccgatgcgggtgtacgcgagcct 6215852
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 6226882 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 6226933
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 194 bits (98), Expect = 4e-047
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 150540 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 150599
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgac 526
|||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 150600 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgac 150659
Query: 527 cctaccactgccttccacacctactccatcctgtggaacccgcagcacgt 576
|| ||| |||||||||||||||||||| | |||||||| ||||||||
Sbjct: 150660 cccacccagtccttccacacctactccatcatctggaacccacagcacgt 150709
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 150175 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 150234
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 150235 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 150294
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 150295 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 150354
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 150355 aactccgccggcaccgtcaccaccttctac 150384
Score = 133 bits (67), Expect = 1e-028
Identities = 141/163 (86%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 155279 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 155338
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 155339 caccaacatcttca-gcgacggcaagggcgagcgtgagcagcagttcgtgctctggttcg 155397
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct: 155398 accccaccgccgacttccacacctactccatcctctggaaccc 155440
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 162275 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 162334
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 162335 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 162394
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 162395 ccctaccaaggacttccacacttactccgtcctctggaaccc 162436
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 162058 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 162117
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 162118 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 162164
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 581 ttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcg 640
|||||||||||||| || ||| | |||||||||||||||||||||| || || ||||||
Sbjct: 150836 ttcgcggtggacgggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcg 150895
Query: 641 ttcccgaggatgcagcccatgaggctgtacgccagcct 678
||||| | || ||||| ||| || ||||||| |||||
Sbjct: 150896 ttccccaagagccagccgatgcgggtgtacgcgagcct 150933
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 161963 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 162014
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 194 bits (98), Expect = 4e-047
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 57749 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 57808
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgac 526
|||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 57809 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgac 57868
Query: 527 cctaccactgccttccacacctactccatcctgtggaacccgcagcacgt 576
|| ||| |||||||||||||||||||| | |||||||| ||||||||
Sbjct: 57869 cccacccagtccttccacacctactccatcatctggaacccacagcacgt 57918
Score = 180 bits (91), Expect = 6e-043
Identities = 139/155 (89%)
Strand = Plus / Minus
Query: 413 gagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaac 472
||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||
Sbjct: 81521 gagatcgacttcgagttcctggggaatgtgaccggggagccgtacacgctgcacaccaac 81462
Query: 473 gtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctacc 532
|||||||||| || ||||||||||| ||| ||||||||||||||||| |||||| |||
Sbjct: 81461 gtgttcacgcaggggcagggccagcgcgagatgcagttccgcctctggtacgaccccacc 81402
Query: 533 actgccttccacacctactccatcctgtggaaccc 567
| | ||||||||||||||||||||| ||||||||
Sbjct: 81401 aaggacttccacacctactccatcctctggaaccc 81367
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 57384 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 57443
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 57444 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 57503
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 57504 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 57563
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 57564 aactccgccggcaccgtcaccaccttctac 57593
Score = 133 bits (67), Expect = 1e-028
Identities = 141/163 (86%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 62488 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 62547
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 62548 caccaacatcttca-gcgacggcaagggcgagcgtgagcagcagttcgtgctctggttcg 62606
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct: 62607 accccaccgccgacttccacacctactccatcctctggaaccc 62649
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 69484 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 69543
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 69544 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 69603
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 69604 ccctaccaaggacttccacacttactccgtcctctggaaccc 69645
Score = 119 bits (60), Expect = 2e-024
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 81743 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 81684
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 81683 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 81624
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 69267 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 69326
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 69327 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 69373
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 581 ttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcg 640
|||||||||||||| || ||| | |||||||||||||||||||||| || || ||||||
Sbjct: 58045 ttcgcggtggacgggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcg 58104
Query: 641 ttcccgaggatgcagcccatgaggctgtacgccagcct 678
||||| | || ||||| ||| || ||||||| |||||
Sbjct: 58105 ttccccaagagccagccgatgcgggtgtacgcgagcct 58142
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 69172 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 69223
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 194 bits (98), Expect = 4e-047
Identities = 152/170 (89%)
Strand = Plus / Minus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 46359 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 46300
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgac 526
|||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 46299 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgac 46240
Query: 527 cctaccactgccttccacacctactccatcctgtggaacccgcagcacgt 576
|| ||| |||||||||||||||||||| | |||||||| ||||||||
Sbjct: 46239 cccacccagtccttccacacctactccatcatctggaacccacagcacgt 46190
Score = 180 bits (91), Expect = 6e-043
Identities = 139/155 (89%)
Strand = Plus / Plus
Query: 413 gagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaac 472
||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||
Sbjct: 22582 gagatcgacttcgagttcctggggaatgtgaccggggagccgtacacgctgcacaccaac 22641
Query: 473 gtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctacc 532
|||||||||| || ||||||||||| ||| ||||||||||||||||| |||||| |||
Sbjct: 22642 gtgttcacgcaggggcagggccagcgcgagatgcagttccgcctctggtacgaccccacc 22701
Query: 533 actgccttccacacctactccatcctgtggaaccc 567
| | ||||||||||||||||||||| ||||||||
Sbjct: 22702 aaggacttccacacctactccatcctctggaaccc 22736
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Minus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 46724 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 46665
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 46664 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 46605
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 46604 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 46545
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 46544 aactccgccggcaccgtcaccaccttctac 46515
Score = 133 bits (67), Expect = 1e-028
Identities = 141/163 (86%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 41620 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 41561
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 41560 caccaacatcttca-gcgacggcaagggcgagcgtgagcagcagttcgtgctctggttcg 41502
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct: 41501 accccaccgccgacttccacacctactccatcctctggaaccc 41459
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Minus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 34624 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 34565
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 34564 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 34505
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 34504 ccctaccaaggacttccacacttactccgtcctctggaaccc 34463
Score = 119 bits (60), Expect = 2e-024
Identities = 105/120 (87%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 22360 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 22419
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 22420 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 22479
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 34841 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 34782
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 34781 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 34735
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 581 ttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcg 640
|||||||||||||| || ||| | |||||||||||||||||||||| || || ||||||
Sbjct: 46063 ttcgcggtggacgggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcg 46004
Query: 641 ttcccgaggatgcagcccatgaggctgtacgccagcct 678
||||| | || ||||| ||| || ||||||| |||||
Sbjct: 46003 ttccccaagagccagccgatgcgggtgtacgcgagcct 45966
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 34936 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 34885
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 194 bits (98), Expect = 4e-047
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 10128292 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 10128351
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgac 526
|||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 10128352 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgac 10128411
Query: 527 cctaccactgccttccacacctactccatcctgtggaacccgcagcacgt 576
|| ||| |||||||||||||||||||| | |||||||| ||||||||
Sbjct: 10128412 cccacccagtccttccacacctactccatcatctggaacccacagcacgt 10128461
Score = 180 bits (91), Expect = 6e-043
Identities = 139/155 (89%)
Strand = Plus / Minus
Query: 413 gagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaac 472
||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||
Sbjct: 10152069 gagatcgacttcgagttcctggggaatgtgaccggggagccgtacacgctgcacaccaac 10152010
Query: 473 gtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctacc 532
|||||||||| || ||||||||||| ||| ||||||||||||||||| |||||| |||
Sbjct: 10152009 gtgttcacgcaggggcagggccagcgcgagatgcagttccgcctctggtacgaccccacc 10151950
Query: 533 actgccttccacacctactccatcctgtggaaccc 567
| | ||||||||||||||||||||| ||||||||
Sbjct: 10151949 aaggacttccacacctactccatcctctggaaccc 10151915
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 10127927 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 10127986
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 10127987 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 10128046
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 10128047 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 10128106
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 10128107 aactccgccggcaccgtcaccaccttctac 10128136
Score = 133 bits (67), Expect = 1e-028
Identities = 141/163 (86%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 10133031 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 10133090
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 10133091 caccaacatcttca-gcgacggcaagggcgagcgtgagcagcagttcgtgctctggttcg 10133149
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct: 10133150 accccaccgccgacttccacacctactccatcctctggaaccc 10133192
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 10140027 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 10140086
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 10140087 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 10140146
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 10140147 ccctaccaaggacttccacacttactccgtcctctggaaccc 10140188
Score = 119 bits (60), Expect = 2e-024
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 10152291 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 10152232
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 10152231 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 10152172
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 10139810 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 10139869
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 10139870 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 10139916
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 581 ttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcg 640
|||||||||||||| || ||| | |||||||||||||||||||||| || || ||||||
Sbjct: 10128588 ttcgcggtggacgggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcg 10128647
Query: 641 ttcccgaggatgcagcccatgaggctgtacgccagcct 678
||||| | || ||||| ||| || ||||||| |||||
Sbjct: 10128648 ttccccaagagccagccgatgcgggtgtacgcgagcct 10128685
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 10139715 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 10139766
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 194 bits (98), Expect = 4e-047
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 27827029 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 27827088
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgac 526
|||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 27827089 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgac 27827148
Query: 527 cctaccactgccttccacacctactccatcctgtggaacccgcagcacgt 576
|| ||| |||||||||||||||||||| | |||||||| ||||||||
Sbjct: 27827149 cccacccagtccttccacacctactccatcatctggaacccacagcacgt 27827198
Score = 180 bits (91), Expect = 6e-043
Identities = 139/155 (89%)
Strand = Plus / Minus
Query: 413 gagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaac 472
||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||
Sbjct: 27850806 gagatcgacttcgagttcctggggaatgtgaccggggagccgtacacgctgcacaccaac 27850747
Query: 473 gtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctacc 532
|||||||||| || ||||||||||| ||| ||||||||||||||||| |||||| |||
Sbjct: 27850746 gtgttcacgcaggggcagggccagcgcgagatgcagttccgcctctggtacgaccccacc 27850687
Query: 533 actgccttccacacctactccatcctgtggaaccc 567
| | ||||||||||||||||||||| ||||||||
Sbjct: 27850686 aaggacttccacacctactccatcctctggaaccc 27850652
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 27826664 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 27826723
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 27826724 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 27826783
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 27826784 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 27826843
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 27826844 aactccgccggcaccgtcaccaccttctac 27826873
Score = 133 bits (67), Expect = 1e-028
Identities = 141/163 (86%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 27831768 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 27831827
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 27831828 caccaacatcttca-gcgacggcaagggcgagcgtgagcagcagttcgtgctctggttcg 27831886
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct: 27831887 accccaccgccgacttccacacctactccatcctctggaaccc 27831929
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 27838764 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 27838823
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 27838824 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 27838883
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 27838884 ccctaccaaggacttccacacttactccgtcctctggaaccc 27838925
Score = 119 bits (60), Expect = 2e-024
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 27851028 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 27850969
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 27850968 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 27850909
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 27838547 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 27838606
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 27838607 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 27838653
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 581 ttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcg 640
|||||||||||||| || ||| | |||||||||||||||||||||| || || ||||||
Sbjct: 27827325 ttcgcggtggacgggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcg 27827384
Query: 641 ttcccgaggatgcagcccatgaggctgtacgccagcct 678
||||| | || ||||| ||| || ||||||| |||||
Sbjct: 27827385 ttccccaagagccagccgatgcgggtgtacgcgagcct 27827422
Score = 65.9 bits (33), Expect = 3e-008
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaac 439
|||||||||||||||||||||||||||||||||
Sbjct: 12967151 cacgacgagatcgacttcgagttcctgggcaac 12967183
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 27838452 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 27838503
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 409 cgacgagatcgacttcgagttcctgggcaac 439
||||||| | |||||||||||||||||||||
Sbjct: 4794490 cgacgagctggacttcgagttcctgggcaac 4794460
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 194 bits (98), Expect = 4e-047
Identities = 152/170 (89%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 28749974 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 28750033
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgac 526
|||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 28750034 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcctctggttcgac 28750093
Query: 527 cctaccactgccttccacacctactccatcctgtggaacccgcagcacgt 576
|| ||| |||||||||||||||||||| | |||||||| ||||||||
Sbjct: 28750094 cccacccagtccttccacacctactccatcatctggaacccacagcacgt 28750143
Score = 180 bits (91), Expect = 6e-043
Identities = 139/155 (89%)
Strand = Plus / Minus
Query: 413 gagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaac 472
||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||||||
Sbjct: 28773746 gagatcgacttcgagttcctggggaatgtgaccggggagccgtacacgctgcacaccaac 28773687
Query: 473 gtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcgaccctacc 532
|||||||||| || ||||||||||| ||| ||||||||||||||||| |||||| |||
Sbjct: 28773686 gtgttcacgcaggggcagggccagcgcgagatgcagttccgcctctggtacgaccccacc 28773627
Query: 533 actgccttccacacctactccatcctgtggaaccc 567
| | ||||||||||||||||||||| ||||||||
Sbjct: 28773626 aaggacttccacacctactccatcctctggaaccc 28773592
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 28749609 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 28749668
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 28749669 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 28749728
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 28749729 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 28749788
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 28749789 aactccgccggcaccgtcaccaccttctac 28749818
Score = 133 bits (67), Expect = 1e-028
Identities = 141/163 (86%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 28754713 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 28754772
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| ||||| |||| |||||||||||| ||||||||||
Sbjct: 28754773 caccaacatcttca-gcgacggcaagggcgagcgtgagcagcagttcgtgctctggttcg 28754831
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | | ||||||||||||||||||||| ||||||||
Sbjct: 28754832 accccaccgccgacttccacacctactccatcctctggaaccc 28754874
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 28761709 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 28761768
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 28761769 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 28761828
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 28761829 ccctaccaaggacttccacacttactccgtcctctggaaccc 28761870
Score = 119 bits (60), Expect = 2e-024
Identities = 105/120 (87%)
Strand = Plus / Minus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 28773968 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 28773909
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 28773908 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 28773849
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 28761492 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 28761551
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 28761552 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 28761598
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 581 ttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggcgcgcggggtggcg 640
|||||||||||||| || ||| | |||||||||||||||||||||| || || ||||||
Sbjct: 28750270 ttcgcggtggacgggacaccgatcagggacttcaagaaccacgaggcccgtggcgtggcg 28750329
Query: 641 ttcccgaggatgcagcccatgaggctgtacgccagcct 678
||||| | || ||||| ||| || ||||||| |||||
Sbjct: 28750330 ttccccaagagccagccgatgcgggtgtacgcgagcct 28750367
Score = 65.9 bits (33), Expect = 3e-008
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaac 439
|||||||||||||||||||||||||||||||||
Sbjct: 13230402 cacgacgagatcgacttcgagttcctgggcaac 13230434
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 28761397 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 28761448
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 409 cgacgagatcgacttcgagttcctgggcaac 439
||||||| | |||||||||||||||||||||
Sbjct: 4973855 cgacgagctggacttcgagttcctgggcaac 4973825
Score = 46.1 bits (23), Expect = 0.025
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 409 cgacgagatcgacttcgagttcctgggcaac 439
||||||| | |||||||||||||||||||||
Sbjct: 4958743 cgacgagctggacttcgagttcctgggcaac 4958713
>dbj|AK059203.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-A11, full
insert sequence
Length = 1234
Score = 190 bits (96), Expect = 7e-046
Identities = 287/348 (82%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 279 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 338
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagggc 400
||||| || || ||| | || | ||||||||| |||||||||||||| | || ||||
Sbjct: 339 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctacctgacatcggaggga 398
Query: 401 gacgcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacg 460
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
Sbjct: 399 gatgcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtg 458
Query: 461 ctgcacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctg 519
||||||||||||||||| ||| | ||| |||| | ||||||||||||||| ||||||
Sbjct: 459 atgcacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctg 517
Query: 520 gttcgaccctaccactgccttccacacctactccatcctgtggaacccgcagcacgtgat 579
||||||||| ||| | | |||||||| |||| ||||||| |||||||| | || | ||
Sbjct: 518 gttcgaccccaccgccgacttccacaactacaccatcctctggaaccccctcaacatcat 577
Query: 580 cttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggc 627
|||| |||||||||||| |||| |||| |||||||||||||||||
Sbjct: 578 cttctcggtggacggcaaggcggtacgggtgttcaagaaccacgaggc 625
>ref|XM_473793.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 966
Score = 190 bits (96), Expect = 7e-046
Identities = 287/348 (82%), Gaps = 2/348 (0%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 211 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 270
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctacctgtcgtcccagggc 400
||||| || || ||| | || | ||||||||| |||||||||||||| | || ||||
Sbjct: 271 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctacctgacatcggaggga 330
Query: 401 gacgcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacg 460
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |
Sbjct: 331 gatgcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtg 390
Query: 461 ctgcacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctg 519
||||||||||||||||| ||| | ||| |||| | ||||||||||||||| ||||||
Sbjct: 391 atgcacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctg 449
Query: 520 gttcgaccctaccactgccttccacacctactccatcctgtggaacccgcagcacgtgat 579
||||||||| ||| | | |||||||| |||| ||||||| |||||||| | || | ||
Sbjct: 450 gttcgaccccaccgccgacttccacaactacaccatcctctggaaccccctcaacatcat 509
Query: 580 cttcgcggtggacggcaccccggtgcgggacttcaagaaccacgaggc 627
|||| |||||||||||| |||| |||| |||||||||||||||||
Sbjct: 510 cttctcggtggacggcaaggcggtacgggtgttcaagaaccacgaggc 557
>gb|C25186.1|C25186 C25186 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5538_1A, mRNA sequence
Length = 441
Score = 188 bits (95), Expect = 3e-045
Identities = 252/304 (82%), Gaps = 1/304 (0%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 139 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 198
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 199 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 258
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 259 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 318
Query: 356 aactccgctggcacggtcaccaccttctacctgtcgtcccagggcgacgcgcacgacgag 415
|||| ||| ||||| ||||||||||||||| ||| ||| ||||| | ||||| |||
Sbjct: 319 aactncgccggcaccgtcaccaccttctacttgtngtcgcagggttcgacccacgatgag 378
Query: 416 atcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgtg 475
|||||||||||||||||||| |||||| ||| ||||| |||| | |||||| ||| |||
Sbjct: 379 atcgacttcgagttcctggg-gacgtgaccggcgagccgtacaagntgcacaacaaagtg 437
Query: 476 ttca 479
||||
Sbjct: 438 ttca 441
>gb|AU183250.1|AU183250 AU183250 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60366, mRNA sequence
Length = 450
Score = 180 bits (91), Expect = 6e-043
Identities = 177/203 (87%), Gaps = 2/203 (0%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 249 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 308
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 309 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 368
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || ||||||||||||||||||||||| || ||||
Sbjct: 369 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcgagttcctggggaatgtgac 427
Query: 445 cggggagccctacacgctgcaca 467
||||||||| |||||||||||||
Sbjct: 428 cggggagccgtacacgctgcaca 450
>gb|C25181.1|C25181 C25181 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5527_2A, mRNA sequence
Length = 430
Score = 178 bits (90), Expect = 3e-042
Identities = 217/260 (83%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 133 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 192
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 193 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 252
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 253 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtncccggc 312
Query: 356 aactccgctggcacggtcaccaccttctacctgtcgtcccagggcgacgcgcacgacgag 415
|||| ||| ||||| ||||||||||||||| ||||||| |||| | ||||| |||
Sbjct: 313 aacttcgccggcaccgtcaccaccttctacttgtcgtcgnagggttcgacccacgatgag 372
Query: 416 atcgacttcgagttcctggg 435
||||||||||||||||||||
Sbjct: 373 atcgacttcgagttcctggg 392
>gb|AU183242.1|AU183242 AU183242 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60195, mRNA sequence
Length = 447
Score = 165 bits (83), Expect = 4e-038
Identities = 171/198 (86%), Gaps = 2/198 (1%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 251 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 310
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| || ||||
Sbjct: 311 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgnctactac 370
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagttcctgggcaacgtgag 444
||||||| ||||| | || |||| || ||||||||||||||||||||||| || ||||
Sbjct: 371 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcgagttcctggggaatgtgac 429
Query: 445 cggggagccctacacgct 462
||||||||| ||||||||
Sbjct: 430 cggggagccgtacacgct 447
>gb|AQ578490.1|AQ578490 nbxb0093C13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0093C13r, DNA sequence
Length = 664
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Minus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 210 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 151
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 150 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 91
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 90 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 31
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 30 aactccgccggcaccgtcaccaccttctac 1
>gb|AY873214.1|AY873214 04ET3_387_C_072_000_001C08 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
04ET3_387_C_072_000_001C08, DNA sequence
Length = 612
Score = 163 bits (82), Expect = 2e-037
Identities = 178/210 (84%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 121 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 180
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 181 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 240
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct: 241 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagctcgtccccggc 300
Query: 356 aactccgctggcacggtcaccaccttctac 385
|||||||| ||||| |||||||||||||||
Sbjct: 301 aactccgccggcaccgtcaccaccttctac 330
Score = 139 bits (70), Expect = 2e-030
Identities = 100/110 (90%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||| ||||||||||||||||||||||| ||||||| ||| ||||| ||||||||||||
Sbjct: 486 cacgatgagatcgacttcgagttcctggggaacgtgaccggcgagccgtacacgctgcac 545
Query: 467 accaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcct 516
|||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 546 accaacgtgttcacgcaggggcaggggcagcgcgagcagcagttccgcct 595
>gb|AACV01010438.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010438, whole
genome shotgun sequence
Length = 16114
Score = 137 bits (69), Expect = 9e-030
Identities = 143/165 (86%), Gaps = 2/165 (1%)
Strand = Plus / Plus
Query: 404 gcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctg 463
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | ||
Sbjct: 6271 gcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtgatg 6330
Query: 464 cacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctggtt 522
||||||||||||||| ||| | ||| |||| | ||||||||||||||| |||||||||
Sbjct: 6331 cacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctggtt 6389
Query: 523 cgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||| ||| | | |||||||| |||| ||||||| ||||||||
Sbjct: 6390 cgaccccaccgccgacttccacaactacaccatcctctggaaccc 6434
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Minus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||||||||||||||||||| ||| | | || |||||||||||||||| |
Sbjct: 9736 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 9677
Query: 560 tggaaccc 567
||||||||
Sbjct: 9676 tggaaccc 9669
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | |||||||| |||||||| | ||| ||||| |||||||| |||
Sbjct: 9829 cacgacgagatcgacctggagttcctcggcaacgtcaccggcgagccatacacgctccac 9770
Query: 467 accaac 472
||||||
Sbjct: 9769 accaac 9764
Score = 50.1 bits (25), Expect = 0.002
Identities = 85/105 (80%)
Strand = Plus / Plus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 5993 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 6052
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || || ||| | || | ||||||||| |||||||||||
Sbjct: 6053 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctac 6097
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 137 bits (69), Expect = 9e-030
Identities = 143/165 (86%), Gaps = 2/165 (1%)
Strand = Plus / Minus
Query: 404 gcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctg 463
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | ||
Sbjct: 453515 gcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtgatg 453456
Query: 464 cacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctggtt 522
||||||||||||||| ||| | ||| |||| | ||||||||||||||| |||||||||
Sbjct: 453455 cacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctggtt 453397
Query: 523 cgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||| ||| | | |||||||| |||| ||||||| ||||||||
Sbjct: 453396 cgaccccaccgccgacttccacaactacaccatcctctggaaccc 453352
Score = 85.7 bits (43), Expect = 3e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||| |
Sbjct: 413441 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 413382
Query: 560 tggaacccgcagcac 574
|||| | ||||||||
Sbjct: 413381 tggacctcgcagcac 413367
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||||||||||||||||||| ||| | | || |||||||||||||||| |
Sbjct: 450051 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 450110
Query: 560 tggaaccc 567
||||||||
Sbjct: 450111 tggaaccc 450118
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | |||||||| |||||||| | ||| ||||| |||||||| |||
Sbjct: 449958 cacgacgagatcgacctggagttcctcggcaacgtcaccggcgagccatacacgctccac 450017
Query: 467 accaac 472
||||||
Sbjct: 450018 accaac 450023
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 425 gagttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgt 474
|||||||| |||||||| | |||| |||| ||||||||||||||||||||
Sbjct: 413516 gagttcctcggcaacgtcaccgggcagccgtacacgctgcacaccaacgt 413467
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | ||||||||||||||||| | |||| | || ||||| |||||
Sbjct: 404930 cacgacgagatcgacctggagttcctgggcaacgtcaccgggcaaccgtacaccctgcat 404871
Query: 467 accaac 472
||||||
Sbjct: 404870 accaac 404865
Score = 50.1 bits (25), Expect = 0.002
Identities = 85/105 (80%)
Strand = Plus / Minus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 453793 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 453734
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || || ||| | || | ||||||||| |||||||||||
Sbjct: 453733 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctac 453689
Score = 48.1 bits (24), Expect = 0.006
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 327 tcgacatgcagatcaagctggt-gccaggcaactccgctggcacggtcaccaccttctac 385
||||| ||||||||||||| || |||| ||||||||| |||||||||||||||| ||||
Sbjct: 413716 tcgacctgcagatcaagctcgtcgccaa-caactccgccggcacggtcaccacctgctac 413658
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 137 bits (69), Expect = 9e-030
Identities = 143/165 (86%), Gaps = 2/165 (1%)
Strand = Plus / Minus
Query: 404 gcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctg 463
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | ||
Sbjct: 8273046 gcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtgatg 8272987
Query: 464 cacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctggtt 522
||||||||||||||| ||| | ||| |||| | ||||||||||||||| |||||||||
Sbjct: 8272986 cacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctggtt 8272928
Query: 523 cgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||| ||| | | |||||||| |||| ||||||| ||||||||
Sbjct: 8272927 cgaccccaccgccgacttccacaactacaccatcctctggaaccc 8272883
Score = 85.7 bits (43), Expect = 3e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||| |
Sbjct: 8235530 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 8235471
Query: 560 tggaacccgcagcac 574
|||| | ||||||||
Sbjct: 8235470 tggacctcgcagcac 8235456
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||||||||||||||||||| ||| | | || |||||||||||||||| |
Sbjct: 8269581 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 8269640
Query: 560 tggaaccc 567
||||||||
Sbjct: 8269641 tggaaccc 8269648
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | |||||||| |||||||| | ||| ||||| |||||||| |||
Sbjct: 8269488 cacgacgagatcgacctggagttcctcggcaacgtcaccggcgagccatacacgctccac 8269547
Query: 467 accaac 472
||||||
Sbjct: 8269548 accaac 8269553
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 425 gagttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgt 474
|||||||| |||||||| | |||| |||| ||||||||||||||||||||
Sbjct: 8235605 gagttcctcggcaacgtcaccgggcagccgtacacgctgcacaccaacgt 8235556
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | ||||||||||||||||| | |||| | || ||||| |||||
Sbjct: 8226927 cacgacgagatcgacctggagttcctgggcaacgtcaccgggcaaccgtacaccctgcat 8226868
Query: 467 accaac 472
||||||
Sbjct: 8226867 accaac 8226862
Score = 56.0 bits (28), Expect = 3e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgt 441
|||| ||||| |||||||||||||||||||||||||
Sbjct: 9886417 gcacaacgagttcgacttcgagttcctgggcaacgt 9886452
Score = 50.1 bits (25), Expect = 0.002
Identities = 85/105 (80%)
Strand = Plus / Minus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 8273324 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 8273265
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || || ||| | || | ||||||||| |||||||||||
Sbjct: 8273264 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctac 8273220
Score = 48.1 bits (24), Expect = 0.006
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 327 tcgacatgcagatcaagctggt-gccaggcaactccgctggcacggtcaccaccttctac 385
||||| ||||||||||||| || |||| ||||||||| |||||||||||||||| ||||
Sbjct: 8235805 tcgacctgcagatcaagctcgtcgccaa-caactccgccggcacggtcaccacctgctac 8235747
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 137 bits (69), Expect = 9e-030
Identities = 143/165 (86%), Gaps = 2/165 (1%)
Strand = Plus / Minus
Query: 404 gcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctg 463
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | ||
Sbjct: 27417145 gcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtgatg 27417086
Query: 464 cacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctggtt 522
||||||||||||||| ||| | ||| |||| | ||||||||||||||| |||||||||
Sbjct: 27417085 cacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctggtt 27417027
Query: 523 cgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||| ||| | | |||||||| |||| ||||||| ||||||||
Sbjct: 27417026 cgaccccaccgccgacttccacaactacaccatcctctggaaccc 27416982
Score = 85.7 bits (43), Expect = 3e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||| |
Sbjct: 27379629 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 27379570
Query: 560 tggaacccgcagcac 574
|||| | ||||||||
Sbjct: 27379569 tggacctcgcagcac 27379555
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||||||||||||||||||| ||| | | || |||||||||||||||| |
Sbjct: 27413680 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 27413739
Query: 560 tggaaccc 567
||||||||
Sbjct: 27413740 tggaaccc 27413747
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | |||||||| |||||||| | ||| ||||| |||||||| |||
Sbjct: 27413587 cacgacgagatcgacctggagttcctcggcaacgtcaccggcgagccatacacgctccac 27413646
Query: 467 accaac 472
||||||
Sbjct: 27413647 accaac 27413652
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 425 gagttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgt 474
|||||||| |||||||| | |||| |||| ||||||||||||||||||||
Sbjct: 27379704 gagttcctcggcaacgtcaccgggcagccgtacacgctgcacaccaacgt 27379655
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | ||||||||||||||||| | |||| | || ||||| |||||
Sbjct: 27371026 cacgacgagatcgacctggagttcctgggcaacgtcaccgggcaaccgtacaccctgcat 27370967
Query: 467 accaac 472
||||||
Sbjct: 27370966 accaac 27370961
Score = 56.0 bits (28), Expect = 3e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgt 441
|||| ||||| |||||||||||||||||||||||||
Sbjct: 29030516 gcacaacgagttcgacttcgagttcctgggcaacgt 29030551
Score = 50.1 bits (25), Expect = 0.002
Identities = 85/105 (80%)
Strand = Plus / Minus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 27417423 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 27417364
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || || ||| | || | ||||||||| |||||||||||
Sbjct: 27417363 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctac 27417319
Score = 48.1 bits (24), Expect = 0.006
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 327 tcgacatgcagatcaagctggt-gccaggcaactccgctggcacggtcaccaccttctac 385
||||| ||||||||||||| || |||| ||||||||| |||||||||||||||| ||||
Sbjct: 27379904 tcgacctgcagatcaagctcgtcgccaa-caactccgccggcacggtcaccacctgctac 27379846
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
complete sequence
Length = 129037
Score = 137 bits (69), Expect = 9e-030
Identities = 143/165 (86%), Gaps = 2/165 (1%)
Strand = Plus / Minus
Query: 404 gcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctg 463
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | ||
Sbjct: 32716 gcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtgatg 32657
Query: 464 cacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctggtt 522
||||||||||||||| ||| | ||| |||| | ||||||||||||||| |||||||||
Sbjct: 32656 cacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctggtt 32598
Query: 523 cgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||| ||| | | |||||||| |||| ||||||| ||||||||
Sbjct: 32597 cgaccccaccgccgacttccacaactacaccatcctctggaaccc 32553
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||||||||||||||||||| ||| | | || |||||||||||||||| |
Sbjct: 29252 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 29311
Query: 560 tggaaccc 567
||||||||
Sbjct: 29312 tggaaccc 29319
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | |||||||| |||||||| | ||| ||||| |||||||| |||
Sbjct: 29159 cacgacgagatcgacctggagttcctcggcaacgtcaccggcgagccatacacgctccac 29218
Query: 467 accaac 472
||||||
Sbjct: 29219 accaac 29224
Score = 50.1 bits (25), Expect = 0.002
Identities = 85/105 (80%)
Strand = Plus / Minus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 32994 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 32935
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || || ||| | || | ||||||||| |||||||||||
Sbjct: 32934 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctac 32890
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 137 bits (69), Expect = 9e-030
Identities = 143/165 (86%), Gaps = 2/165 (1%)
Strand = Plus / Minus
Query: 404 gcgcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctg 463
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| | ||
Sbjct: 30557008 gcgcacgacgagatcgacttcgagttcctggggaacgtgagcggcgagccgtacgtgatg 30556949
Query: 464 cacaccaacgtgttcacgc-gcggacagggccagcgggagcagcagttccgcctctggtt 522
||||||||||||||| ||| | ||| |||| | ||||||||||||||| |||||||||
Sbjct: 30556948 cacaccaacgtgttcgcgcaggggagaggg-aaccgggagcagcagttctacctctggtt 30556890
Query: 523 cgaccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||| ||| | | |||||||| |||| ||||||| ||||||||
Sbjct: 30556889 cgaccccaccgccgacttccacaactacaccatcctctggaaccc 30556845
Score = 85.7 bits (43), Expect = 3e-014
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||| |
Sbjct: 30516931 gagcagcagttccacctctggttcgaccccaccaccgacttccacacctactccatcgtc 30516872
Query: 560 tggaacccgcagcac 574
|||| | ||||||||
Sbjct: 30516871 tggacctcgcagcac 30516857
Score = 79.8 bits (40), Expect = 2e-012
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacacctactccatcctg 559
||||||||||||||||||||||||||||| ||| | | || |||||||||||||||| |
Sbjct: 30553544 gagcagcagttccgcctctggttcgaccccaccgccgactaccacacctactccatcgtc 30553603
Query: 560 tggaaccc 567
||||||||
Sbjct: 30553604 tggaaccc 30553611
Score = 67.9 bits (34), Expect = 7e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | |||||||| |||||||| | ||| ||||| |||||||| |||
Sbjct: 30553451 cacgacgagatcgacctggagttcctcggcaacgtcaccggcgagccatacacgctccac 30553510
Query: 467 accaac 472
||||||
Sbjct: 30553511 accaac 30553516
Score = 60.0 bits (30), Expect = 2e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 425 gagttcctgggcaacgtgagcggggagccctacacgctgcacaccaacgt 474
|||||||| |||||||| | |||| |||| ||||||||||||||||||||
Sbjct: 30517006 gagttcctcggcaacgtcaccgggcagccgtacacgctgcacaccaacgt 30516957
Score = 60.0 bits (30), Expect = 2e-006
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 407 cacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgcac 466
||||||||||||||| | ||||||||||||||||| | |||| | || ||||| |||||
Sbjct: 30508420 cacgacgagatcgacctggagttcctgggcaacgtcaccgggcaaccgtacaccctgcat 30508361
Query: 467 accaac 472
||||||
Sbjct: 30508360 accaac 30508355
Score = 56.0 bits (28), Expect = 3e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgt 441
|||| ||||| |||||||||||||||||||||||||
Sbjct: 32180420 gcacaacgagttcgacttcgagttcctgggcaacgt 32180455
Score = 50.1 bits (25), Expect = 0.002
Identities = 85/105 (80%)
Strand = Plus / Minus
Query: 281 tccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcagatc 340
|||||||||||||||||||||||| | ||| ||| |||||| || || |||| ||||
Sbjct: 30557286 tccggctccgggttccagtccaaggaccagttcctcttcggcgagttcagcatggagatg 30557227
Query: 341 aagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||| || || ||| | || | ||||||||| |||||||||||
Sbjct: 30557226 aagctcgtccccggcgaatcgcccggcacggtcgccaccttctac 30557182
Score = 48.1 bits (24), Expect = 0.006
Identities = 53/60 (88%), Gaps = 2/60 (3%)
Strand = Plus / Minus
Query: 327 tcgacatgcagatcaagctggt-gccaggcaactccgctggcacggtcaccaccttctac 385
||||| ||||||||||||| || |||| ||||||||| |||||||||||||||| ||||
Sbjct: 30517206 tcgacctgcagatcaagctcgtcgccaa-caactccgccggcacggtcaccacctgctac 30517148
>gb|AU225192.1|AU225192 AU225192 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0129, mRNA sequence
Length = 426
Score = 135 bits (68), Expect = 3e-029
Identities = 142/164 (86%), Gaps = 2/164 (1%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 264 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 323
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 324 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 383
Query: 386 ctgtcgtcccagggcgacg-cgcacgacgagatcgacttcgagt 428
||||||| ||||| | || |||| || ||||||||||||||||
Sbjct: 384 ttgtcgtcgcaggg-gccgacgcatgatgagatcgacttcgagt 426
>gb|C25353.1|C25353 C25353 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S6033_1A, mRNA sequence
Length = 333
Score = 133 bits (67), Expect = 1e-028
Identities = 162/194 (83%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 137 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 196
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 197 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 256
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
||||||||||||||||| || ||||||||||||||||||||||||||||| || || |||
Sbjct: 257 cagtccaagagcgagtanctcttcggcaagatcgacatgcagatcaagctcgtccccggc 316
Query: 356 aactccgctggcac 369
|||||||| |||||
Sbjct: 317 aactccgccggcac 330
>gb|C28350.1|C28350 C28350 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C60796_1A, mRNA sequence
Length = 429
Score = 129 bits (65), Expect = 2e-027
Identities = 146/171 (85%), Gaps = 3/171 (1%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 239 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 298
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||||||| ||||||| || || ||||||||||| ||||| |||||| ||| ||||
Sbjct: 299 atcgacatgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcctactac 358
Query: 386 ctgtcgtcccaggg-cgacgcgcacgacgagatcgacttcgagttcctggg 435
||| ||| |||| ||| |||| || |||||||| ||||||||||||||
Sbjct: 359 ttgtggtcgaagggccga--cgcatgatgagatcganttcgagttcctggg 407
>gb|AQ861400.1|AQ861400 nbeb0016H04r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0016H04r, DNA sequence
Length = 772
Score = 127 bits (64), Expect = 8e-027
Identities = 140/163 (85%), Gaps = 2/163 (1%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||| | ||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 574 gcacgacgaggtggacttcgagttcctgggcaacgtgagcggcgagccgtacctgctgca 633
Query: 466 caccaacgtgttcacgcg-cggacagggccagcgggagcagcagttccgcctctggttcg 524
||||||| | |||| ||| ||| |||||||||| |||||||||||| ||||||||||
Sbjct: 634 caccaacatcttca-gcgacggcaagggccagcgtgagcagcagttcgtgctctggttcg 692
Query: 525 accctaccactgccttccacacctactccatcctgtggaaccc 567
|||| ||| | |||||||||||||||||| || ||||||||
Sbjct: 693 accccaccgncgacttccacacctactccattctctggaaccc 735
>gb|CB651562.1|CB651562 OSJNEb16J04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb16J04 5', mRNA sequence
Length = 753
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 140 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 199
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 200 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 259
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 260 ccctaccaaggacttccacacttactccgtcctctggaaccc 301
>gb|CB655114.1|CB655114 OSJNEc08D08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08D08 5', mRNA sequence
Length = 730
Score = 123 bits (62), Expect = 1e-025
Identities = 137/162 (84%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 36 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 95
Query: 466 caccaacgtgttcacgcgcggacagggccagcgggagcagcagttccgcctctggttcga 525
||||||||||| || | || | ||| || ||||||||||||||| | ||||||||
Sbjct: 96 caccaacgtgtacagccaggggaaaggcggccgcgagcagcagttccgcatgtggttcga 155
Query: 526 ccctaccactgccttccacacctactccatcctgtggaaccc 567
|||||||| | ||||||||| |||||| |||| ||||||||
Sbjct: 156 ccctaccaaggacttccacacttactccgtcctctggaaccc 197
>gb|D16085.1|D16085 RICC3021A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C3021A, mRNA sequence
Length = 323
Score = 121 bits (61), Expect = 5e-025
Identities = 153/184 (83%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 140 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 199
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 200 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 259
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatgcagatcaagctggtgccaggc 355
|||||||||||||||||||| ||||||||||||||||||||||||||| | || || |||
Sbjct: 260 cagtccaagagcgagtacctcttcggcaagatcgacatgcagatcaagntcgtccccggc 319
Query: 356 aact 359
||||
Sbjct: 320 aact 323
>gb|AU063923.1|AU063923 AU063923 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2104_1A, mRNA sequence
Length = 373
Score = 111 bits (56), Expect = 5e-022
Identities = 108/126 (85%)
Strand = Plus / Plus
Query: 266 acgctggaccgcacgtccggctccgggttccagtccaagagcgagtacctgttcggcaag 325
||||||||| | ||||||||||| ||||||||||||||| ||||||||| | |||||||
Sbjct: 248 acgctggacaggacgtccggctcagggttccagtccaagcacgagtacctctacggcaag 307
Query: 326 atcgacatgcagatcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
|||||||| ||| ||||||| || || |||||||||| ||||| |||||| ||| ||||
Sbjct: 308 atcgacatncagctcaagctcgtccccggcaactccgncggcaccgtcaccgcctactac 367
Query: 386 ctgtcg 391
|||||
Sbjct: 368 ttgtcg 373
>gb|CB652674.1|CB652674 OSJNEc02O21.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02O21 5', mRNA sequence
Length = 625
Score = 101 bits (51), Expect = 5e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 279 cgtccggctccgggttccagtccaagagcgagtacctgttcggcaagatcgacatgcaga 338
||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||||
Sbjct: 197 cgtccggctccggcttccagtccaagaaccagtacctgtacggccgcttcgacatgcaga 256
Query: 339 tcaagctggtgccaggcaactccgctggcacggtcaccaccttctac 385
||||||| || || ||||||||||| ||||| ||| |||||||||||
Sbjct: 257 tcaagctcgtccccggcaactccgccggcaccgtcgccaccttctac 303
Score = 87.7 bits (44), Expect = 7e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 406 gcacgacgagatcgacttcgagttcctgggcaacgtgagcggggagccctacacgctgca 465
|||||||||||||||||||||||||||||| |||| |||||| ||||| |||||| ||||
Sbjct: 414 gcacgacgagatcgacttcgagttcctggggaacgcgagcggcgagccgtacacggtgca 473
Query: 466 cacc 469
||||
Sbjct: 474 cacc 477
Score = 58.0 bits (29), Expect = 6e-006
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 500 gagcagcagttccgcctctggttcgaccctaccactgccttccacaccta-ctccatcct 558
||||||||||||||| | |||||||||||||||| | ||||||||| || |||| ||||
Sbjct: 510 gagcagcagttccgcatgtggttcgaccctaccaaggacttccacacttacctccgtcct 569
Query: 559 gtggaaccc 567
||||||||
Sbjct: 570 ctggaaccc 578
Score = 48.1 bits (24), Expect = 0.006
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 184 cggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct: 102 cggcaacttctaccaggacgtggacatcacttggggcgacggccgcggcaag 153
>dbj|AK058291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E08, full
insert sequence
Length = 634
Score = 101 bits (51), Expect = 5e-019
Identities = 132/159 (83%)
Strand = Plus / Plus
Query: 176 gcgcagggcggcaacttctaccaggacacagagatgacctggggcgatggccgcggcaag 235
||||| || |||||||||| ||||||| | ||| || | ||||| | ||||||||||||
Sbjct: 147 gcgcatggaggcaacttcttccaggacgcggaggtgtcgtgggggcagggccgcggcaag 206
Query: 236 gtagtggacggcgggcgcgggctggacctgacgctggaccgcacgtccggctccgggttc 295
| || || || || || ||||| ||||| ||||| ||| | | |||||||| ||||||
Sbjct: 207 atcgtcgatggtggccgtgggctcgacctcacgcttgacaggagctccggctctgggttc 266
Query: 296 cagtccaagagcgagtacctgttcggcaagatcgacatg 334
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 267 cagtccaagagcgagtacctcttcggcaagatcgacatg 305
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 700,606
Number of Sequences: 438736
Number of extensions: 700606
Number of successful extensions: 4908
Number of sequences better than 0.5: 256
Number of HSP's better than 0.5 without gapping: 282
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3518
Number of HSP's gapped (non-prelim): 1294
length of query: 678
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 657
effective length of database: 2,791,206,460
effective search space: 1833822644220
effective search space used: 1833822644220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)