BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2655972.2.1
(666 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB675784.1|CB675784 OSJNEe11L12.r OSJNEe Oryza sativa (j... 147 9e-033
dbj|AK066744.1| Oryza sativa (japonica cultivar-group) cDNA... 147 9e-033
gb|AACV01002291.1| Oryza sativa (japonica cultivar-group) c... 147 9e-033
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 147 9e-033
ref|NM_191552.1| Oryza sativa (japonica cultivar-group), p... 147 9e-033
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 147 9e-033
dbj|AP003560.2| Oryza sativa (japonica cultivar-group) geno... 147 9e-033
dbj|AP003309.3| Oryza sativa (japonica cultivar-group) geno... 147 9e-033
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 147 9e-033
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 147 9e-033
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 147 9e-033
>gb|CB675784.1|CB675784 OSJNEe11L12.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11L12 3', mRNA sequence
Length = 805
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 514 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 455
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 454 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 395
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 394 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 335
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 334 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 275
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 274 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 225
>dbj|AK066744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088B01, full
insert sequence
Length = 2441
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Plus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 1579 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 1638
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 1639 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 1698
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 1699 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 1758
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 1759 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 1818
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 1819 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 1868
>gb|AACV01002291.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002291, whole
genome shotgun sequence
Length = 11657
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 7492 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 7433
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 7432 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 7373
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 7372 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 7313
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 7312 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 7253
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 7252 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 7203
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 30668312 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 30668253
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 30668252 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 30668193
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 30668192 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 30668133
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 30668132 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 30668073
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 30668072 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 30668023
>ref|NM_191552.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1911
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Plus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 1538 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 1597
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 1598 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 1657
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 1658 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 1717
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 1718 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 1777
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 1778 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 1827
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 5115695 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 5115636
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 5115635 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 5115576
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 5115575 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 5115516
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 5115515 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 5115456
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 5115455 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 5115406
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1060H01
Length = 157987
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 29919 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 29860
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 29859 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 29800
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 29799 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 29740
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 29739 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 29680
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 29679 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 29630
>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBb0036G09
Length = 124118
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 70246 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 70187
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 70186 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 70127
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 70126 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 70067
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 70066 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 70007
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 70006 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 69957
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 5024739 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 5024680
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 5024679 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 5024620
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 5024619 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 5024560
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 5024559 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 5024500
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 5024499 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 5024450
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 30226460 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 30226401
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 30226400 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 30226341
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 30226340 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 30226281
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 30226280 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 30226221
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 30226220 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 30226171
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 147 bits (74), Expect = 9e-033
Identities = 236/290 (81%)
Strand = Plus / Minus
Query: 39 ttctgttcttttttggctgtagaaaccaagaaaacgattttctatacaaggatttctggc 98
|||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 30587642 ttctattcttctttggctgtagaaatcaagaaaatgattttctatacaaggacttctggt 30587583
Query: 99 taactcatgcgcaggatgagggggtgttgtcctcgaaaaggggcggtggtttcttcgtcg 158
||||||| || || ||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 30587582 atgctcatgcccatgaccagggggtattgtcctcgaaaaatggcggtggtttctttgttg 30587523
Query: 159 ctttttcccgggatcagccgcaaaaggtctacgtgcaacccaagataaaggaacagagtt 218
| ||||| | |||||||| ||||| ||||| ||||| | || ||||| ||| ||||||
Sbjct: 30587522 ccttttctagagatcagcctcaaaaagtctatgtgcagcacaggataagggagcagagtg 30587463
Query: 219 caagactgtggaacttattactgtccgatgcagtgatctacattgcaggctcttcgacga 278
||||| ||||||| ||| || ||| | || | || |||||||||||||| || || |
Sbjct: 30587462 caagagtgtggaatttactaaagtctggggctgcaatatacattgcaggctcgtctacca 30587403
Query: 279 aaatgcctgccgatgttacagctgcgctagaggaggttatttgtaaagaa 328
||||||| || |||||||||||||| || || || ||||| ||| |||||
Sbjct: 30587402 aaatgccagctgatgttacagctgcactggaagaagttatctgtcaagaa 30587353
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 826,344
Number of Sequences: 438736
Number of extensions: 826344
Number of successful extensions: 3699
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3618
Number of HSP's gapped (non-prelim): 70
length of query: 666
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 645
effective length of database: 2,791,206,460
effective search space: 1800328166700
effective search space used: 1800328166700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)