BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647494.2.1
(730 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK122067.1| Oryza sativa (japonica cultivar-group) cDNA... 448 e-123
ref|NM_191984.1| Oryza sativa (japonica cultivar-group), p... 448 e-123
gb|CF325957.1|CF325957 JMT1--04-L10.g1 AtJMT-overexpressing... 424 e-116
gb|CF195912.1|CF195912 Azbi2.1_C02 AZ-BI Oryza sativa (japo... 353 8e-095
gb|CF313325.1|CF313325 HD--01-G16.b1 OsHDAC1-overexpressing... 317 5e-084
gb|AU030387.1|AU030387 AU030387 Rice cDNA from immature lea... 276 2e-071
gb|AU108158.1|AU108158 AU108158 Rice callus Oryza sativa (j... 242 2e-061
gb|CF327158.1|CF327158 NACL--01-I13.b1 Rice callus plasmid ... 228 3e-057
gb|AU070202.1|AU070202 AU070202 Rice root Oryza sativa (jap... 216 1e-053
gb|D49257.1|D49257 RICS16440A Rice green shoot Oryza sativa... 200 8e-049
gb|AU030388.1|AU030388 AU030388 Rice cDNA from immature lea... 200 8e-049
gb|CB680540.1|CB680540 OSJNEf05H23.r OSJNEf Oryza sativa (j... 184 4e-044
gb|CF327159.1|CF327159 NACL--01-I13.g1 Rice callus plasmid ... 174 4e-041
gb|CB680539.1|CB680539 OSJNEf05H23.f OSJNEf Oryza sativa (j... 167 1e-038
gb|CA755139.1|CA755139 BR030014000_PLATE_A04_25_023.ab1 OA ... 127 9e-027
gb|D24905.1|D24905 RICR2744A Rice root Oryza sativa (japoni... 115 3e-023
gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) c... 103 1e-019
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 103 1e-019
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
gb|AACV01002583.1| Oryza sativa (japonica cultivar-group) c... 46 0.026
gb|AACV01002584.1| Oryza sativa (japonica cultivar-group) c... 46 0.026
ref|NM_191104.1| Oryza sativa (japonica cultivar-group), p... 46 0.026
dbj|AP003446.3| Oryza sativa (japonica cultivar-group) geno... 46 0.026
>dbj|AK122067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117D10, full
insert sequence
Length = 893
Score = 448 bits (226), Expect = e-123
Identities = 391/446 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 598 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 539
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || |||||||||||||| |||||||| || || || |||||||| ||
Sbjct: 538 tttgcaatgttatcagagagaggatcatcagggtttggtgcacttaggagtgcctggata 479
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 478 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 419
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct: 418 catatcctaccaagcttgtcaatgttggggtggtatattttggtcaggaacctaaccttt 359
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
|| |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 358 ggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttca 299
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| ||||| || ||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 298 tagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccgac 239
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
|| |||||||| || ||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct: 238 ggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttgatgatt 179
Query: 661 cggcgcgggagattgctgttggccat 686
|| || ||||| ||||||||||||||
Sbjct: 178 cgccgggggaggttgctgttggccat 153
>ref|NM_191984.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 462
Score = 448 bits (226), Expect = e-123
Identities = 391/446 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 446 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 387
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || |||||||||||||| |||||||| || || || |||||||| ||
Sbjct: 386 tttgcaatgttatcagagagaggatcatcagggtttggtgcacttaggagtgcctggata 327
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 326 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 267
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct: 266 catatcctaccaagcttgtcaatgttggggtggtatattttggtcaggaacctaaccttt 207
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
|| |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 206 ggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttca 147
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| ||||| || ||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 146 tagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccgac 87
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
|| |||||||| || ||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct: 86 ggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttgatgatt 27
Query: 661 cggcgcgggagattgctgttggccat 686
|| || ||||| ||||||||||||||
Sbjct: 26 cgccgggggaggttgctgttggccat 1
>gb|CF325957.1|CF325957 JMT1--04-L10.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-L10, mRNA sequence
Length = 699
Score = 424 bits (214), Expect = e-116
Identities = 370/422 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 439 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 380
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || |||||||||||||| |||||||| || || || |||||||| ||
Sbjct: 379 tttgcaatgttatcagagagaggatcatcagggtttggtgcacttaggagtgcctggata 320
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 319 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 260
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct: 259 catatcctaccaagcttgtcaatgttggggtggtatattttggtcaggaacctaaccttt 200
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
|| |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 199 ggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttca 140
Query: 541 tagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgac 600
||||| ||||| || ||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 139 tagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccgac 80
Query: 601 ggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgatt 660
|| |||||||| || ||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct: 79 ggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttgatgatt 20
Query: 661 cg 662
||
Sbjct: 19 cg 18
>gb|CF195912.1|CF195912 Azbi2.1_C02 AZ-BI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-BI2.1C02 5', mRNA sequence
Length = 521
Score = 353 bits (178), Expect = 8e-095
Identities = 331/383 (86%)
Strand = Plus / Minus
Query: 304 gcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatgctc 363
|||||||| || |||| ||||||| |||||||| || || || |||||||| || |||
Sbjct: 455 gcaatgttatcagagannngatcatcagggtttggtgcacttaggagtgcctggatactc 396
Query: 364 agtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcat 423
| |||||||| || |||||||| ||||| |||||||||||||| |||||||| ||||||
Sbjct: 395 aaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcat 336
Query: 424 atcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttttggg 483
|||||||||||||||||||| || || ||||| ||||| || || || ||||| |||||
Sbjct: 335 atcctaccaagcttgtcaatgttggggtggtatattttggtcaggaacctaacctttgga 276
Query: 484 gcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatag 543
|||||||| ||||||||||| || || || ||||||||||| ||||||||||||||||||
Sbjct: 275 gcagccataggatattcctcgggtaaaaagagttcaagcttaaaaactccaccttcatag 216
Query: 544 ggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggc 603
|| ||||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 215 ggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccgacgga 156
Query: 604 gacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcgg 663
|||||||| || ||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 155 gacgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttgatgattcgc 96
Query: 664 cgcgggagattgctgttggccat 686
|| ||||| ||||||||||||||
Sbjct: 95 cgggggaggttgctgttggccat 73
>gb|CF313325.1|CF313325 HD--01-G16.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--01-G16, mRNA sequence
Length = 587
Score = 317 bits (160), Expect = 5e-084
Identities = 289/332 (87%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 337 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 278
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || | |||||||||||| |||||||| || || || |||||||| ||
Sbjct: 277 tttgcaatgttatcagggagaggatcatcagggtttggtgcacttaggagtgcctggata 218
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 217 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 158
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct: 157 catatcctaccaagcttgtcaatgttggggtggtatattttggtcaggaacctaaccttt 98
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca 540
|| |||||||| |||||||||||||| || || ||||||||||| |||||||||||||||
Sbjct: 97 ggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttca 38
Query: 541 tagggtgactgcgcggggccaaggatcatgac 572
||||| ||||| || |||||||||||||||||
Sbjct: 37 tagggggactgtgccgggccaaggatcatgac 6
>gb|AU030387.1|AU030387 AU030387 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50990_1A, mRNA sequence
Length = 394
Score = 276 bits (139), Expect = 2e-071
Identities = 236/269 (87%)
Strand = Plus / Minus
Query: 418 aggcatatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaact 477
|||||||||||||||||||||||||| || | ||||| ||||| | || || |||||
Sbjct: 386 aggcatatcctaccaagcttgtcaatgttggngtggtatattttgntcaggaacctaacc 327
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 326 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 267
Query: 538 tcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctcc 597
|||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 266 tcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctcc 207
Query: 598 gacggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatg 657
||||| |||||||| || ||||| ||||| |||||||| || ||||||||||||||||||
Sbjct: 206 gacggagacgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttgatg 147
Query: 658 attcggcgcgggagattgctgttggccat 686
||||| || ||||| ||||||||||||||
Sbjct: 146 attcgccgggggaggttgctgttggccat 118
>gb|AU108158.1|AU108158 AU108158 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50402, mRNA sequence
Length = 437
Score = 242 bits (122), Expect = 2e-061
Identities = 229/267 (85%)
Strand = Plus / Minus
Query: 420 gcatatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaacttt 479
||||||||||| |||||||||||| | | ||||| ||||| || || || ||||| ||
Sbjct: 400 gcatatcctacaaagcttgtcaatgntgnggtggtatattttggtcaggaacctaacctt 341
Query: 480 tggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttc 539
||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 340 tggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttc 281
Query: 540 atagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccga 599
|||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 280 atagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccga 221
Query: 600 cggcgacgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgat 659
||| ||||||| || ||||| ||||| || || || || ||||||||||||||||||||
Sbjct: 220 cgganacgcgctnattcccggcgctggctcnctnaggagtcgctgcgtctccttgatgat 161
Query: 660 tcggcgcgggagattgctgttggccat 686
|| || ||||| ||||||||||||||
Sbjct: 160 tcnccgggggaggttgctgttggccat 134
>gb|CF327158.1|CF327158 NACL--01-I13.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-I13, mRNA sequence
Length = 535
Score = 228 bits (115), Expect = 3e-057
Identities = 217/251 (86%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 251 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 192
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || |||||||||||||| |||||||| || || || |||||||| ||
Sbjct: 191 tttgcaatgttatcagagagaggatcatcagggtttggtgcacttaggagtgcctggata 132
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 131 ctcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 72
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||||||||||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct: 71 catatcctaccaagcttgtcaatgttggggtggtatattttggtcaggaacctaaccttt 12
Query: 481 ggggcagccat 491
|| ||||||||
Sbjct: 11 ggagcagccat 1
>gb|AU070202.1|AU070202 AU070202 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3571_1A, mRNA sequence
Length = 423
Score = 216 bits (109), Expect = 1e-053
Identities = 176/199 (88%)
Strand = Plus / Minus
Query: 488 ccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatagggtg 547
|||| ||||||||||||| || || ||||||||||| ||||| |||||||||||||| |
Sbjct: 340 ccataggatattcctcagttaaaaagagttcaagcttaaaaacnccaccttcataggggg 281
Query: 548 actgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcgacg 607
|||| || ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||
Sbjct: 280 actgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccgacggagacg 221
Query: 608 cgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggcgcg 667
|||| || ||||| ||||| |||||||| || ||||||||||||||||||||||| || |
Sbjct: 220 cgctgattcccggngctggctcgctgaggagtcgctgcgtctccttgatgattcgccggg 161
Query: 668 ggagattgctgttggccat 686
|||| ||||||||||||||
Sbjct: 160 ggaggttgctgttggccat 142
>gb|D49257.1|D49257 RICS16440A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 412
Score = 200 bits (101), Expect = 8e-049
Identities = 177/202 (87%), Gaps = 1/202 (0%)
Strand = Plus / Minus
Query: 486 agccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttca-tagg 544
|||||| |||||||||||||| || || ||||||| ||| ||||||||||||||| ||||
Sbjct: 315 agccataggatattcctcaggtaaaaagagttcaancttaaaaactccaccttcaatagg 256
Query: 545 gtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggcg 604
||||| || ||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct: 255 nggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctcctccgacggan 196
Query: 605 acgcgctaatccccggtgctggttcgctgagaagccgctgcgtctccttgatgattcggc 664
||||||| || ||||| ||||| |||||||| || ||||||||||||||||||||||| |
Sbjct: 195 acgcgctgattcccggcgctggctcgctgaggagtcgctgcgtctccttgatgattcgcc 136
Query: 665 gcgggagattgctgttggccat 686
| ||||| ||||||||||||||
Sbjct: 135 gggggaggttgctgttggccat 114
>gb|AU030388.1|AU030388 AU030388 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E50990_2Z, mRNA sequence
Length = 692
Score = 200 bits (101), Expect = 8e-049
Identities = 239/289 (82%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 419 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 360
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || |||||||||||||| |||||||| || || || | |||||| ||
Sbjct: 359 tttgcaatgttatcagagagaggatcatcagggtttggtgcactnaggantgcctggata 300
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
| || |||||||| || |||| ||| ||||| ||||||||| |||| |||||||| |||
Sbjct: 299 cncaaaagaactgtccgaatctnaagggctgggctccatttgaccttgagaatgtcaagg 240
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttttgtgagaaatctaactttt 480
||||||| ||||||||||| ||| | || ||||| ||||| || | || ||||| |||
Sbjct: 239 catatccnaccaagcttgtnaatntaggggtggtanattttggtcangaacctaaccttt 180
Query: 481 ggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaa 529
|| ||||||| ||| |||||||||| || || |||||| |||| ||||
Sbjct: 179 ggancagccataggaaattcctcaggnaaaaagagttcangcttaaaaa 131
>gb|CB680540.1|CB680540 OSJNEf05H23.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05H23 3', mRNA sequence
Length = 724
Score = 184 bits (93), Expect = 4e-044
Identities = 189/221 (85%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| |||||| |||| ||||| |||| |||||||||
Sbjct: 264 tacaggcgagtccactcctttgctgtttcaacaacttctgcttcattggctttccagtgc 323
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggggcgctcagaagtgcctgaatg 360
|| |||||||| || | ||||||||||| |||||||| || || || |||||||| ||
Sbjct: 324 tttgcaatgttatcaaaaagaggatcatcagggtttggtgcacttaggagtgcctggata 383
Query: 361 ctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgagg 420
|||| ||||||| || |||||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 384 ctcaaaagaactgaccgaatctgaagggctgggctccatttgtccttgagaatgtcaagg 443
Query: 421 catatcctaccaagcttgtcaatattaggatggtaaatttt 461
||||||||||||||||||||||| || || ||||| |||||
Sbjct: 444 catatcctaccaagcttgtcaatgttggggtggtatatttt 484
>gb|CF327159.1|CF327159 NACL--01-I13.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--01-I13, mRNA sequence
Length = 557
Score = 174 bits (88), Expect = 4e-041
Identities = 173/200 (86%), Gaps = 1/200 (0%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 284 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 343
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttggg-gcgctcagaagtgcctgaat 359
|| |||||||| || |||||||||| || |||||| || || || || |||||||| ||
Sbjct: 344 tttgcaatgttatcaaagagaggatcttcagggttttggtgcacttaggagtgcctggat 403
Query: 360 gctcagtagaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgag 419
|||| |||||||| || |||||||| ||||| |||||||||||||| |||||||| ||
Sbjct: 404 actcaaaagaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaag 463
Query: 420 gcatatcctaccaagcttgt 439
||||||||||||||||||||
Sbjct: 464 gcatatcctaccaagcttgt 483
>gb|CB680539.1|CB680539 OSJNEf05H23.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05H23 5', mRNA sequence
Length = 687
Score = 167 bits (84), Expect = 1e-038
Identities = 158/180 (87%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 484 gcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccaccttcatag 543
|||||||| |||||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 341 gcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccaccttcatag 282
Query: 544 ggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctcctccgacggc 603
|| ||||| || ||||||||||||||||| | |||||| ||||| |||||||||| |||
Sbjct: 281 ggggactgtgccgggccaaggatcatgacgtcgaagtagcgcatgttctcctccgtcgga 222
Query: 604 gacg-cgctaatccccggtgctggttcg-ctgagaagccgctgcgtctccttgatgattc 661
|||| |||| || ||||| ||||| ||| ||||| || ||||||||||||||||||||||
Sbjct: 221 gacgtcgctgattcccggcgctggctcgcctgaggagtcgctgcgtctccttgatgattc 162
>gb|CA755139.1|CA755139 BR030014000_PLATE_A04_25_023.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030014000_PLATE_A04_25_023.ab1 similar to
ubiquitin-conjugating enzyme E2 [Oryza sativa (japonica
cultivar-group)] gi|21644620|dbj|BAC01179.1| (AP003264)
ubiquitin-conjugating enzyme E2 [Oryza sativa (japonica
cultivar-group)], mRNA sequence
Length = 255
Score = 127 bits (64), Expect = 9e-027
Identities = 106/120 (88%)
Strand = Plus / Minus
Query: 567 catgacattgaagtaccgcatattctcctccgacggcgacgcgctaatccccggtgctgg 626
|||||| |||||||| ||||| |||||||||||||| |||||||| || ||||| |||||
Sbjct: 255 catgacgttgaagtagcgcatgttctcctccgacggagacgcgctgattcccggcgctgg 196
Query: 627 ttcgctgagaagccgctgcgtctccttgatgattcggcgcgggagattgctgttggccat 686
|||||||| || |||||||||||| |||||||||| || ||||| ||||||||||||||
Sbjct: 195 ctcgctgaggagtcgctgcgtctccctgatgattcgccgggggaggttgctgttggccat 136
>gb|D24905.1|D24905 RICR2744A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2744_1A, mRNA sequence
Length = 351
Score = 115 bits (58), Expect = 3e-023
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 241 tacaggcgagtccactccttcgctgtctcaacagcttcagcttcgttggatttccagtgt 300
|||||||||||||||||||| ||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 98 tacaggcgagtccactcctttgctgtttcaacagcttctgcttcattggctttccagtgc 39
Query: 301 ttcgcaatgttgtctgagagaggatcatctgggtttgg 338
|| |||||||| || |||||||||||||| ||||||||
Sbjct: 38 tttgcaatgttatcagagagaggatcatcagggtttgg 1
>gb|AACV01002092.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002092, whole
genome shotgun sequence
Length = 25972
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 20403 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 20462
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 20463 ctccgacggagacgcgctgattcccggcgctg 20494
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 18718 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 18777
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 18778 ctaccaagct 18787
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 18356 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 18415
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 18416 gatcatcagggtttggtgcacttaggagtgcctg 18449
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 19697 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 19756
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 20787 ccttgatgattcgccgggggaggttgctgttggccat 20823
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 18243 tacaggcgagtccactcctttgctg 18267
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 27744968 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 27745027
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 27745028 ctccgacggagacgcgctgattcccggcgctg 27745059
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 27743283 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 27743342
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 27743343 ctaccaagct 27743352
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 27742921 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 27742980
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 27742981 gatcatcagggtttggtgcacttaggagtgcctg 27743014
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 27744262 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 27744321
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 27745352 ccttgatgattcgccgggggaggttgctgttggccat 27745388
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 34992768 tccttaagaatgtcgaggcatat 34992746
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 27742808 tacaggcgagtccactcctttgctg 27742832
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 2192351 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 2192410
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 2192411 ctccgacggagacgcgctgattcccggcgctg 2192442
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 2190666 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 2190725
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 2190726 ctaccaagct 2190735
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 2190304 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 2190363
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 2190364 gatcatcagggtttggtgcacttaggagtgcctg 2190397
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 2191645 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 2191704
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 2192735 ccttgatgattcgccgggggaggttgctgttggccat 2192771
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 9440151 tccttaagaatgtcgaggcatat 9440129
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 2190191 tacaggcgagtccactcctttgctg 2190215
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 131592 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 131651
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 131652 ctccgacggagacgcgctgattcccggcgctg 131683
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 129907 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 129966
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 129967 ctaccaagct 129976
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 129545 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 129604
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 129605 gatcatcagggtttggtgcacttaggagtgcctg 129638
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 130886 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 130945
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 131976 ccttgatgattcgccgggggaggttgctgttggccat 132012
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 129432 tacaggcgagtccactcctttgctg 129456
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 72864 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 72923
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 72924 ctccgacggagacgcgctgattcccggcgctg 72955
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 71179 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 71238
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 71239 ctaccaagct 71248
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 70817 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 70876
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 70877 gatcatcagggtttggtgcacttaggagtgcctg 70910
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 72158 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 72217
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 73248 ccttgatgattcgccgggggaggttgctgttggccat 73284
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 70704 tacaggcgagtccactcctttgctg 70728
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 2132195 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 2132254
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 2132255 ctccgacggagacgcgctgattcccggcgctg 2132286
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 2130510 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 2130569
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 2130570 ctaccaagct 2130579
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 2130148 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 2130207
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 2130208 gatcatcagggtttggtgcacttaggagtgcctg 2130241
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 2131489 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 2131548
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 2132579 ccttgatgattcgccgggggaggttgctgttggccat 2132615
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 9257934 tccttaagaatgtcgaggcatat 9257912
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 9241503 tccttaagaatgtcgaggcatat 9241481
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 2130035 tacaggcgagtccactcctttgctg 2130059
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 27333916 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 27333975
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 27333976 ctccgacggagacgcgctgattcccggcgctg 27334007
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 27332231 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 27332290
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 27332291 ctaccaagct 27332300
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 27331869 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 27331928
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 27331929 gatcatcagggtttggtgcacttaggagtgcctg 27331962
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 27333210 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 27333269
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 27334300 ccttgatgattcgccgggggaggttgctgttggccat 27334336
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 34459655 tccttaagaatgtcgaggcatat 34459633
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 34443224 tccttaagaatgtcgaggcatat 34443202
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 27331756 tacaggcgagtccactcctttgctg 27331780
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 534 accttcatagggtgactgcgcggggccaaggatcatgacattgaagtaccgcatattctc 593
|||||||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||
Sbjct: 27664298 accttcatagggggactgtgccgggccaaggatcatgacgttgaagtagcgcatgttctc 27664357
Query: 594 ctccgacggcgacgcgctaatccccggtgctg 625
||||||||| |||||||| || ||||| ||||
Sbjct: 27664358 ctccgacggagacgcgctgattcccggcgctg 27664389
Score = 91.7 bits (46), Expect = 5e-016
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 367 agaactgtacgtatctgaagagctggactccatttgtccttaagaatgtcgaggcatatc 426
|||||||| || |||||||| ||||| |||||||||||||| |||||||| |||||||||
Sbjct: 27662613 agaactgtccgaatctgaagggctgggctccatttgtccttgagaatgtcaaggcatatc 27662672
Query: 427 ctaccaagct 436
||||||||||
Sbjct: 27662673 ctaccaagct 27662682
Score = 83.8 bits (42), Expect = 1e-013
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 263 ctgtctcaacagcttcagcttcgttggatttccagtgtttcgcaatgttgtctgagagag 322
|||| ||||||||||| ||||| |||| ||||||||| || |||||||| || |||||||
Sbjct: 27662251 ctgtttcaacagcttctgcttcattggctttccagtgctttgcaatgttatcagagagag 27662310
Query: 323 gatcatctgggtttggggcgctcagaagtgcctg 356
||||||| |||||||| || || || ||||||||
Sbjct: 27662311 gatcatcagggtttggtgcacttaggagtgcctg 27662344
Score = 71.9 bits (36), Expect = 5e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 478 tttggggcagccattggatattcctcaggcaagaatagttcaagcttgaaaactccacct 537
||||| |||||||| |||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 27663592 tttggagcagccataggatattcctcaggtaaaaagagttcaagcttaaaaactccacct 27663651
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 650 ccttgatgattcggcgcgggagattgctgttggccat 686
||||||||||||| || ||||| ||||||||||||||
Sbjct: 27664682 ccttgatgattcgccgggggaggttgctgttggccat 27664718
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 34912098 tccttaagaatgtcgaggcatat 34912076
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 241 tacaggcgagtccactccttcgctg 265
|||||||||||||||||||| ||||
Sbjct: 27662138 tacaggcgagtccactcctttgctg 27662162
>gb|AACV01002583.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002583, whole
genome shotgun sequence
Length = 2794
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 2662 tccttaagaatgtcgaggcatat 2640
>gb|AACV01002584.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002584, whole
genome shotgun sequence
Length = 20295
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 16249 tccttaagaatgtcgaggcatat 16227
>ref|NM_191104.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 447
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 272 tccttaagaatgtcgaggcatat 250
>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1529_G03
Length = 100635
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 403 tccttaagaatgtcgaggcatat 425
|||||||||||||||||||||||
Sbjct: 41462 tccttaagaatgtcgaggcatat 41440
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 881,575
Number of Sequences: 438736
Number of extensions: 881575
Number of successful extensions: 5617
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5426
Number of HSP's gapped (non-prelim): 185
length of query: 730
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 709
effective length of database: 2,791,206,460
effective search space: 1978965380140
effective search space used: 1978965380140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)