BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA... 96 3e-017
dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA... 96 3e-017
dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA... 96 3e-017
ref|XM_482628.1| Oryza sativa (japonica cultivar-group), mRNA 96 3e-017
ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-... 96 3e-017
ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-... 96 3e-017
gb|AU086004.1|AU086004 AU086004 Rice green shoot Oryza sati... 78 6e-012
gb|AU174752.1|AU174752 AU174752 Rice cDNA from leaf Oryza s... 78 6e-012
dbj|AK104860.1| Oryza sativa (japonica cultivar-group) cDNA... 78 6e-012
dbj|AB122055.1| Oryza sativa (japonica cultivar-group) CCR ... 78 6e-012
dbj|AP005429.3| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
dbj|AP005426.3| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
gb|AACV01019998.1| Oryza sativa (japonica cultivar-group) c... 78 6e-012
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 78 6e-012
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 78 6e-012
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 78 6e-012
gb|AU184158.1|AU184158 AU184158 Rice root Oryza sativa (jap... 70 1e-009
gb|AU197607.1|AU197607 AU197607 Rice root Oryza sativa (jap... 70 1e-009
gb|AU222675.1|AU222675 AU222675 Rice green shoot Oryza sati... 70 1e-009
gb|CB660334.1|CB660334 OSJNEd01P10.r OSJNEd Oryza sativa (j... 70 1e-009
dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chro... 70 1e-009
dbj|AK067949.1| Oryza sativa (japonica cultivar-group) cDNA... 70 1e-009
dbj|AP004703.3| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|AACV01018567.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 1e-009
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|AU094766.1|AU094766 AU094766 Rice panicle shorter than 3... 66 2e-008
gb|AU096067.1|AU096067 AU096067 Rice green shoot Oryza sati... 50 0.001
gb|AZ130095.1|AZ130095 OSJNBb0103K03f CUGI Rice BAC Library... 44 0.083
gb|D24005.1|D24005 RICR0828A Rice root Oryza sativa (japoni... 44 0.083
gb|AACV01005631.1| Oryza sativa (japonica cultivar-group) c... 44 0.083
ref|XM_468346.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.083
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 44 0.083
dbj|AP005303.3| Oryza sativa (japonica cultivar-group) geno... 44 0.083
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.083
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.083
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.083
>dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143B20, full
insert sequence
Length = 1441
Score = 95.6 bits (48), Expect = 3e-017
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 1178 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 1119
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 1118 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 1059
Query: 468 ctcgtcagagcacctctccgggacggggtagcccgggaaggacttgcggagggtgcggac 527
|||||| |||||||| ||||| ||||| | |||||| |||| |||| |||||||
Sbjct: 1058 ctcgtcggagcacctggtggggacagggtactcggggaagagcttggcgaggatgcggac 999
Query: 528 gacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggcggcg 579
||| ||||||||||||| || | |||||||||| | ||||||||||||||
Sbjct: 998 gacaccctcgcggtggaggacagactcggcgcagaggaagcggccggcggcg 947
>dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A12, full
insert sequence
Length = 1423
Score = 95.6 bits (48), Expect = 3e-017
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 1177 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 1118
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 1117 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 1058
Query: 468 ctcgtcagagcacctctccgggacggggtagcccgggaaggacttgcggagggtgcggac 527
|||||| |||||||| ||||| ||||| | |||||| |||| |||| |||||||
Sbjct: 1057 ctcgtcggagcacctggtggggacagggtactcggggaagagcttggcgaggatgcggac 998
Query: 528 gacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggcggcg 579
||| ||||||||||||| || | |||||||||| | ||||||||||||||
Sbjct: 997 gacaccctcgcggtggaggacagactcggcgcagaggaagcggccggcggcg 946
>dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A12, full
insert sequence
Length = 1439
Score = 95.6 bits (48), Expect = 3e-017
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 1178 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 1119
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 1118 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 1059
Query: 468 ctcgtcagagcacctctccgggacggggtagcccgggaaggacttgcggagggtgcggac 527
|||||| |||||||| ||||| ||||| | |||||| |||| |||| |||||||
Sbjct: 1058 ctcgtcggagcacctggtggggacagggtactcggggaagagcttggcgaggatgcggac 999
Query: 528 gacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggcggcg 579
||| ||||||||||||| || | |||||||||| | ||||||||||||||
Sbjct: 998 gacaccctcgcggtggaggacagactcggcgcagaggaagcggccggcggcg 947
>ref|XM_482628.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1423
Score = 95.6 bits (48), Expect = 3e-017
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 1177 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 1118
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 1117 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 1058
Query: 468 ctcgtcagagcacctctccgggacggggtagcccgggaaggacttgcggagggtgcggac 527
|||||| |||||||| ||||| ||||| | |||||| |||| |||| |||||||
Sbjct: 1057 ctcgtcggagcacctggtggggacagggtactcggggaagagcttggcgaggatgcggac 998
Query: 528 gacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggcggcg 579
||| ||||||||||||| || | |||||||||| | ||||||||||||||
Sbjct: 997 gacaccctcgcggtggaggacagactcggcgcagaggaagcggccggcggcg 946
>ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1 mRNA
Length = 1441
Score = 95.6 bits (48), Expect = 3e-017
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 1178 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 1119
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 1118 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 1059
Query: 468 ctcgtcagagcacctctccgggacggggtagcccgggaaggacttgcggagggtgcggac 527
|||||| |||||||| ||||| ||||| | |||||| |||| |||| |||||||
Sbjct: 1058 ctcgtcggagcacctggtggggacagggtactcggggaagagcttggcgaggatgcggac 999
Query: 528 gacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggcggcg 579
||| ||||||||||||| || | |||||||||| | ||||||||||||||
Sbjct: 998 gacaccctcgcggtggaggacagactcggcgcagaggaagcggccggcggcg 947
>ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1 mRNA
Length = 1439
Score = 95.6 bits (48), Expect = 3e-017
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 1178 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 1119
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 1118 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 1059
Query: 468 ctcgtcagagcacctctccgggacggggtagcccgggaaggacttgcggagggtgcggac 527
|||||| |||||||| ||||| ||||| | |||||| |||| |||| |||||||
Sbjct: 1058 ctcgtcggagcacctggtggggacagggtactcggggaagagcttggcgaggatgcggac 999
Query: 528 gacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggcggcg 579
||| ||||||||||||| || | |||||||||| | ||||||||||||||
Sbjct: 998 gacaccctcgcggtggaggacagactcggcgcagaggaagcggccggcggcg 947
>gb|AU086004.1|AU086004 AU086004 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10974, mRNA sequence
Length = 637
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 337 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 287
>gb|AU174752.1|AU174752 AU174752 Rice cDNA from leaf Oryza sativa (japonica cultivar-group)
cDNA clone F10310, mRNA sequence
Length = 421
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 86 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 36
>dbj|AK104860.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D11, full
insert sequence
Length = 1245
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 966 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 916
>dbj|AB122055.1| Oryza sativa (japonica cultivar-group) CCR mRNA for cinnamoyl
coenzyme A reductase, partial cds
Length = 1111
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 780 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 730
>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0701F11
Length = 154950
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 91351 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 91401
>dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0668D04
Length = 148848
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 13548 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 13598
>gb|AACV01019998.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019998, whole
genome shotgun sequence
Length = 21483
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 18374 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 18324
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 713708 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 713758
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4366103 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 4366153
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 13839914 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 13839964
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 77.8 bits (39), Expect = 6e-012
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15021905 gttggacatcttgtacggctgcttccgtgggttcacctcgtcagagcacct 15021955
>gb|AU184158.1|AU184158 AU184158 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1430, mRNA sequence
Length = 446
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 174 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 115
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 114 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 55
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 54 ctcgtcggagcacct 40
>gb|AU197607.1|AU197607 AU197607 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1554, mRNA sequence
Length = 449
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 177 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 118
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 117 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 58
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 57 ctcgtcggagcacct 43
>gb|AU222675.1|AU222675 AU222675 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S11643, mRNA sequence
Length = 444
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 161 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 102
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 101 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 42
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 41 ctcgtcggagcacct 27
>gb|CB660334.1|CB660334 OSJNEd01P10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd01P10 3', mRNA sequence
Length = 686
Score = 69.9 bits (35), Expect = 1e-009
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacctctccgggac 491
|||||| ||||||||||||||||||| ||||||||||||||| ||||||| || ||
Sbjct: 206 gttggacatcttgtacggctgcttccgtgggttcacctcgtcaaagcaccttgtgggcac 265
Query: 492 ggggtagcccgggaaggacttgcggagggtgcggacgacgtcctcgcggtggagcacggc 551
|| || | |||||| ||||| |||| || ||||||||||||| ||||| || ||| |
Sbjct: 266 aggatactcggggaagatcttgccgaggatgtggacgacgtcctcacggtgcaggacgcc 325
Query: 552 gtcggcgcaga 562
||||||||||
Sbjct: 326 ctcggcgcaga 336
>dbj|AP003890.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1244_D07,
*** SEQUENCING IN PROGRESS ***
Length = 104295
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 3579 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 3638
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 3639 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 3698
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 3699 ctcgtcggagcacct 3713
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 516 gagggtgcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggc 575
|||| |||||||||| ||||||||||||| || | |||||||||| | ||||||||||
Sbjct: 7084 gaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggc 7143
Query: 576 ggcg 579
||||
Sbjct: 7144 ggcg 7147
>dbj|AK067949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128P15, full
insert sequence
Length = 1265
Score = 69.9 bits (35), Expect = 1e-009
Identities = 47/51 (92%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacctcgtcagagcacct 482
|||||| ||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 967 gttggacatcttgtacggctgcttccgtgggttcatctcgtcagagcacct 917
>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0528B09
Length = 156897
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 103490 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 103549
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 103550 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 103609
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 103610 ctcgtcggagcacct 103624
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 516 gagggtgcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggc 575
|||| |||||||||| ||||||||||||| || | |||||||||| | ||||||||||
Sbjct: 106995 gaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggc 107054
Query: 576 ggcg 579
||||
Sbjct: 107055 ggcg 107058
>gb|AACV01018567.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018567, whole
genome shotgun sequence
Length = 9310
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 6163 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 6104
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 6103 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 6044
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 6043 ctcgtcggagcacct 6029
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 516 gagggtgcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggc 575
|||| |||||||||| ||||||||||||| || | |||||||||| | ||||||||||
Sbjct: 2658 gaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggc 2599
Query: 576 ggcg 579
||||
Sbjct: 2598 ggcg 2595
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 21261408 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 21261467
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 21261468 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 21261527
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 21261528 ctcgtcggagcacct 21261542
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 516 gagggtgcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggc 575
|||| |||||||||| ||||||||||||| || | |||||||||| | ||||||||||
Sbjct: 21264913 gaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggc 21264972
Query: 576 ggcg 579
||||
Sbjct: 21264973 ggcg 21264976
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 12755445 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 12755504
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 12755505 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 12755564
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 12755565 ctcgtcggagcacct 12755579
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 516 gagggtgcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggc 575
|||| |||||||||| ||||||||||||| || | |||||||||| | ||||||||||
Sbjct: 12758950 gaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggc 12759009
Query: 576 ggcg 579
||||
Sbjct: 12759010 ggcg 12759013
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 20357451 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 20357510
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 20357511 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 20357570
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 20357571 ctcgtcggagcacct 20357585
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 516 gagggtgcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggc 575
|||| |||||||||| ||||||||||||| || | |||||||||| | ||||||||||
Sbjct: 20360956 gaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggc 20361015
Query: 576 ggcg 579
||||
Sbjct: 20361016 ggcg 20361019
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 69.9 bits (35), Expect = 1e-009
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 348 gcccttctcctggaagcacacgacggtgtcgtacagcgcctgcgccgccggggtgaactc 407
|||||||||||||| |||| || || |||||||||| ||| |||||| ||||||
Sbjct: 21499495 gcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactc 21499554
Query: 408 caggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgggttcac 467
||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||||||
Sbjct: 21499555 cagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttctt 21499614
Query: 468 ctcgtcagagcacct 482
|||||| ||||||||
Sbjct: 21499615 ctcgtcggagcacct 21499629
Score = 56.0 bits (28), Expect = 2e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 516 gagggtgcggacgacgtcctcgcggtggagcacggcgtcggcgcagatgtagcggccggc 575
|||| |||||||||| ||||||||||||| || | |||||||||| | ||||||||||
Sbjct: 21503000 gaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggc 21503059
Query: 576 ggcg 579
||||
Sbjct: 21503060 ggcg 21503063
>gb|AU094766.1|AU094766 AU094766 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31533, mRNA sequence
Length = 494
Score = 65.9 bits (33), Expect = 2e-008
Identities = 69/81 (85%)
Strand = Plus / Minus
Query: 402 gaactccaggcccagctccctcagccgctggttggagatcttgtacggctgcttcctcgg 461
||||||||| ||||| |||| ||| |||||| || |||||||||||||||||||| ||
Sbjct: 159 gaactccagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggg 100
Query: 462 gttcacctcgtcagagcacct 482
|||| |||||| ||||||||
Sbjct: 99 gttcttctcgtcggagcacct 79
>gb|AU096067.1|AU096067 AU096067 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12055, mRNA sequence
Length = 337
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcctcgggttcacc 468
|||||| ||||||||||||||||||| |||||||||
Sbjct: 37 gttggacatcttgtacggctgcttccgtgggttcacc 1
>gb|AZ130095.1|AZ130095 OSJNBb0103K03f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0103K03f, DNA
sequence
Length = 632
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 391 cgcggtggagcacggcgccgatgcagaggtagcggccg 428
>gb|D24005.1|D24005 RICR0828A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0828_1A, mRNA sequence
Length = 276
Score = 44.1 bits (22), Expect = 0.083
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 432 gttggagatcttgtacggctgcttcc 457
|||||| |||||||||||||||||||
Sbjct: 137 gttggacatcttgtacggctgcttcc 112
>gb|AACV01005631.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005631, whole
genome shotgun sequence
Length = 9513
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 5889 cgcggtggagcacggcgccgatgcagaggtagcggccg 5852
>ref|XM_468346.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1065
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 808 cgcggtggagcacggcgccgatgcagaggtagcggccg 771
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 612416 cgcggtggagcacggcgccgatgcagaggtagcggccg 612379
>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0016F11
Length = 134907
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 94991 cgcggtggagcacggcgccgatgcagaggtagcggccg 94954
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 21417353 cgcggtggagcacggcgccgatgcagaggtagcggccg 21417316
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 34870417 cgcggtggagcacggcgccgatgcagaggtagcggccg 34870380
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 44.1 bits (22), Expect = 0.083
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 536 cgcggtggagcacggcgtcggcgcagatgtagcggccg 573
||||||||||||||||| || ||||| ||||||||||
Sbjct: 34777143 cgcggtggagcacggcgccgatgcagaggtagcggccg 34777106
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 950,027
Number of Sequences: 438736
Number of extensions: 950027
Number of successful extensions: 29227
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28514
Number of HSP's gapped (non-prelim): 691
length of query: 581
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 560
effective length of database: 2,791,206,460
effective search space: 1563075617600
effective search space used: 1563075617600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)