BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA... 224 4e-056
gb|AACV01009691.1| Oryza sativa (japonica cultivar-group) c... 224 4e-056
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 224 4e-056
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 224 4e-056
gb|CA998503.1|CA998503 S345F_H05 Rice cold stress germinati... 98 6e-018
gb|AQ861369.1|AQ861369 nbeb0016D18f CUGI Rice BAC Library (... 46 0.021
gb|AQ913477.1|AQ913477 nbeb0041B08f CUGI Rice BAC Library (... 46 0.021
gb|AQ365786.2|AQ365786 nbxb0064B05f CUGI Rice BAC Library O... 44 0.082
dbj|AK107126.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.082
emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Parti... 44 0.082
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 44 0.082
emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC O... 44 0.082
gb|AACV01024886.1| Oryza sativa (japonica cultivar-group) c... 44 0.082
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.082
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.082
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 44 0.082
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.082
dbj|AP004754.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
dbj|AP004758.3| Oryza sativa (japonica cultivar-group) geno... 42 0.32
gb|AACV01013265.1| Oryza sativa (japonica cultivar-group) c... 42 0.32
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 42 0.32
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.32
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.32
>dbj|AK065005.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E11, full
insert sequence
Length = 2911
Score = 224 bits (113), Expect = 4e-056
Identities = 218/253 (86%)
Strand = Plus / Minus
Query: 326 gtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggatgc 385
||||| || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 2592 gtctcaggcggtgcagtccatcggatcaatgcccagttcaggccttcgaagaagggatgc 2533
Query: 386 cgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaagc 445
||||| ||||||| |||||| ||| ||||| ||||||||||| || || |||||||||
Sbjct: 2532 cgcttgatctcagcagctcctttcgttgagcctagccggtactccggatccttcacaagc 2473
Query: 446 agccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttcaag 505
| ||||||||||| ||| || || |||||||| ||||| || ||||||||||||||||
Sbjct: 2472 aaccctctgatcaaatcccgggcatggaagctgacagcagggttatcagggaacttcagc 2413
Query: 506 ccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttg 565
||||| |||| |||||||| ||||| ||||||||||| |||||| |||| |||||| ||
Sbjct: 2412 ccctgcgagaccacatttgtcagtgtctcctcattgccgggtcccctgaacggtgtcctg 2353
Query: 566 ccatagagtaatt 578
|||||||||||||
Sbjct: 2352 ccatagagtaatt 2340
Score = 69.9 bits (35), Expect = 1e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||| ||||| |||||||| |||||||||| ||| ||||| || |||||||
Sbjct: 2702 actagaagagctcaaactcaatgtcgtctccattcagcctgaactccaggcacttgcctt 2643
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 2642 ccttcttcttccgtg 2628
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 33 tttgatggtattaacaaggcataaagt 59
||||||||||||||||||| |||||||
Sbjct: 2887 tttgatggtattaacaaggaataaagt 2861
>gb|AACV01009691.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009691, whole
genome shotgun sequence
Length = 45807
Score = 224 bits (113), Expect = 4e-056
Identities = 218/253 (86%)
Strand = Plus / Minus
Query: 326 gtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggatgc 385
||||| || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 7681 gtctcaggcggtgcagtccatcggatcaatgcccagttcaggccttcgaagaagggatgc 7622
Query: 386 cgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaagc 445
||||| ||||||| |||||| ||| ||||| ||||||||||| || || |||||||||
Sbjct: 7621 cgcttgatctcagcagctcctttcgttgagcctagccggtactccggatccttcacaagc 7562
Query: 446 agccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttcaag 505
| ||||||||||| ||| || || |||||||| ||||| || ||||||||||||||||
Sbjct: 7561 aaccctctgatcaaatcccgggcatggaagctgacagcagggttatcagggaacttcagc 7502
Query: 506 ccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttg 565
||||| |||| |||||||| ||||| ||||||||||| |||||| |||| |||||| ||
Sbjct: 7501 ccctgcgagaccacatttgtcagtgtctcctcattgccgggtcccctgaacggtgtcctg 7442
Query: 566 ccatagagtaatt 578
|||||||||||||
Sbjct: 7441 ccatagagtaatt 7429
Score = 69.9 bits (35), Expect = 1e-009
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||| ||||| |||||||| |||||||||| ||| ||||| || |||||||
Sbjct: 7791 actagaagagctcaaactcaatgtcgtctccattcagcctgaactccaggcacttgcctt 7732
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 7731 ccttcttcttccgtg 7717
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 33 tttgatggtattaacaaggcataaagt 59
||||||||||||||||||| |||||||
Sbjct: 7977 tttgatggtattaacaaggaataaagt 7951
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 224 bits (113), Expect = 4e-056
Identities = 218/253 (86%)
Strand = Plus / Plus
Query: 326 gtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggatgc 385
||||| || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 10034952 gtctcaggcggtgcagtccatcggatcaatgcccagttcaggccttcgaagaagggatgc 10035011
Query: 386 cgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaagc 445
||||| ||||||| |||||| ||| ||||| ||||||||||| || || |||||||||
Sbjct: 10035012 cgcttgatctcagcagctcctttcgttgagcctagccggtactccggatccttcacaagc 10035071
Query: 446 agccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttcaag 505
| ||||||||||| ||| || || |||||||| ||||| || ||||||||||||||||
Sbjct: 10035072 aaccctctgatcaaatcccgggcatggaagctgacagcagggttatcagggaacttcagc 10035131
Query: 506 ccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttg 565
||||| |||| |||||||| ||||| ||||||||||| |||||| |||| |||||| ||
Sbjct: 10035132 ccctgcgagaccacatttgtcagtgtctcctcattgccgggtcccctgaacggtgtcctg 10035191
Query: 566 ccatagagtaatt 578
|||||||||||||
Sbjct: 10035192 ccatagagtaatt 10035204
Score = 69.9 bits (35), Expect = 1e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||| ||||| |||||||| |||||||||| ||| ||||| || |||||||
Sbjct: 10034842 actagaagagctcaaactcaatgtcgtctccattcagcctgaactccaggcacttgcctt 10034901
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 10034902 ccttcttcttccgtg 10034916
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tttgatggtattaacaaggcataaagt 59
||||||||||||||||||| |||||||
Sbjct: 10034656 tttgatggtattaacaaggaataaagt 10034682
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 224 bits (113), Expect = 4e-056
Identities = 218/253 (86%)
Strand = Plus / Plus
Query: 326 gtctctggtggtgcggtccaccggatcaaggcccagttcaggccttcaaagaagggatgc 385
||||| || ||||| ||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 17382314 gtctcaggcggtgcagtccatcggatcaatgcccagttcaggccttcgaagaagggatgc 17382373
Query: 386 cgcttaatctcagtggctcctctcgacgagccaagccggtactctggctctttcacaagc 445
||||| ||||||| |||||| ||| ||||| ||||||||||| || || |||||||||
Sbjct: 17382374 cgcttgatctcagcagctcctttcgttgagcctagccggtactccggatccttcacaagc 17382433
Query: 446 agccctctgatcagatctcgagcgtggaagcttacagctggattatcagggaacttcaag 505
| ||||||||||| ||| || || |||||||| ||||| || ||||||||||||||||
Sbjct: 17382434 aaccctctgatcaaatcccgggcatggaagctgacagcagggttatcagggaacttcagc 17382493
Query: 506 ccctgtgagatcacatttgagagtgtttcctcattgccaggtcccttgaatggtgtcttg 565
||||| |||| |||||||| ||||| ||||||||||| |||||| |||| |||||| ||
Sbjct: 17382494 ccctgcgagaccacatttgtcagtgtctcctcattgccgggtcccctgaacggtgtcctg 17382553
Query: 566 ccatagagtaatt 578
|||||||||||||
Sbjct: 17382554 ccatagagtaatt 17382566
Score = 69.9 bits (35), Expect = 1e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 213 actaaaagagctcgaactcgatgtcgtcaccattcagccggaattccagacatttgcctt 272
|||| |||||||| ||||| |||||||| |||||||||| ||| ||||| || |||||||
Sbjct: 17382204 actagaagagctcaaactcaatgtcgtctccattcagcctgaactccaggcacttgcctt 17382263
Query: 273 cctttttcttgcgtg 287
|||| ||||| ||||
Sbjct: 17382264 ccttcttcttccgtg 17382278
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tttgatggtattaacaaggcataaagt 59
||||||||||||||||||| |||||||
Sbjct: 17382018 tttgatggtattaacaaggaataaagt 17382044
>gb|CA998503.1|CA998503 S345F_H05 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 267
Score = 97.6 bits (49), Expect = 6e-018
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 470 tggaagcttacagctggattatcagggaacttcaagccctgtgagatcacatttgagagt 529
|||||||| ||||| || |||||||||||||||| ||||| |||| |||||| | |||
Sbjct: 255 tggaagctgacagcagggttatcagggaacttcagcccctgcgagaccacattggtcagt 196
Query: 530 gtttcctcattgccaggtcccttgaatggtgtcttgccatagagtaatt 578
|| ||||||||||| |||||| |||| |||||| |||||||||||||||
Sbjct: 195 gtctcctcattgccgggtcccctgaacggtgtcctgccatagagtaatt 147
>gb|AQ861369.1|AQ861369 nbeb0016D18f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0016D18f, DNA sequence
Length = 894
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tttgatggtattaacaaggcataaagt 59
||||||||||||||||||| |||||||
Sbjct: 439 tttgatggtattaacaaggaataaagt 465
>gb|AQ913477.1|AQ913477 nbeb0041B08f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0041B08f, DNA sequence
Length = 775
Score = 46.1 bits (23), Expect = 0.021
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 33 tttgatggtattaacaaggcataaagt 59
||||||||||||||||||| |||||||
Sbjct: 427 tttgatggtattaacaaggaataaagt 453
>gb|AQ365786.2|AQ365786 nbxb0064B05f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0064B05f, DNA sequence
Length = 556
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 496 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 437
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 436 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 383
>dbj|AK107126.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B11, full
insert sequence
Length = 2486
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 2187 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 2128
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 2127 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 2074
>emb|AL713909.5|CNS07YQ9 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0073H17 of
library OSJNBa from chromosome 12 of cultivar Nipponbare of
ssp. japonica of Oryza sativa (rice), complete sequence
Length = 113494
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 111991 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 111932
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 111931 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 111878
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 1504 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 1563
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 1564 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 1617
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 162200
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 161698 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 161757
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 161758 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 161811
>gb|AACV01024886.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024886, whole
genome shotgun sequence
Length = 7002
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Minus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 5952 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 5893
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 5892 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 5839
>gb|CH401280.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000117
genomic scaffold, whole genome shotgun sequence
Length = 1521144
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 513093 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 513152
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 513153 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 513206
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 14514954 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 14515013
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 14515014 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 14515067
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 17669362 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 17669421
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 17669422 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 17669475
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 44.1 bits (22), Expect = 0.082
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 350 atcaaggcccagttcaggccttcaaagaagggatgccgcttaatctcagtggctcctctc 409
||||||||||| || | |||||||||||| || || |||| || |||| |||||||||
Sbjct: 17623733 atcaaggcccaatttaagccttcaaagaaagggtgttgcttgatttcagctgctcctctc 17623792
Query: 410 gacgagccaagccggtactctggctctttcacaagcagccctctgatcagatct 463
| || ||||| | || ||||||||| ||||| |||| ||| |||| ||||||
Sbjct: 17623793 aatgatccaagtctgttctctggctccttcactagcaaacctttgataagatct 17623846
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0529B09
Length = 138188
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 tttgccttcctttttcttgcg 285
|||||||||||||||||||||
Sbjct: 105717 tttgccttcctttttcttgcg 105697
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0664C05
Length = 165354
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 tttgccttcctttttcttgcg 285
|||||||||||||||||||||
Sbjct: 21691 tttgccttcctttttcttgcg 21671
>gb|AACV01013265.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013265, whole
genome shotgun sequence
Length = 26491
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 265 tttgccttcctttttcttgcg 285
|||||||||||||||||||||
Sbjct: 11722 tttgccttcctttttcttgcg 11742
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 tttgccttcctttttcttgcg 285
|||||||||||||||||||||
Sbjct: 1166363 tttgccttcctttttcttgcg 1166343
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 tttgccttcctttttcttgcg 285
|||||||||||||||||||||
Sbjct: 5371646 tttgccttcctttttcttgcg 5371626
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 tttgccttcctttttcttgcg 285
|||||||||||||||||||||
Sbjct: 5371646 tttgccttcctttttcttgcg 5371626
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 42.1 bits (21), Expect = 0.32
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 265 tttgccttcctttttcttgcg 285
|||||||||||||||||||||
Sbjct: 5474783 tttgccttcctttttcttgcg 5474763
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 754,065
Number of Sequences: 438736
Number of extensions: 754065
Number of successful extensions: 10891
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10675
Number of HSP's gapped (non-prelim): 216
length of query: 578
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 557
effective length of database: 2,791,206,460
effective search space: 1554701998220
effective search space used: 1554701998220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)