BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643556.2.1
(1354 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA... 281 5e-073
gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-... 281 5e-073
ref|NM_188300.1| Oryza sativa (japonica cultivar-group), p... 281 5e-073
dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA... 262 4e-067
dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA... 262 4e-067
gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) c... 238 6e-060
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 238 6e-060
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 238 6e-060
dbj|AP003105.2| Oryza sativa (japonica cultivar-group) geno... 238 6e-060
dbj|AP003197.4| Oryza sativa (japonica cultivar-group) geno... 238 6e-060
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 238 6e-060
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 238 6e-060
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 238 6e-060
gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda ph... 220 2e-054
gb|AC135920.2| Oryza sativa (japonica cultivar-group) chrom... 218 6e-054
gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) c... 218 6e-054
ref|NT_107224.1| Oryza sativa (japonica cultivar-group) 218 6e-054
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 218 6e-054
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 218 6e-054
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 218 6e-054
gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-... 214 9e-053
gb|D22380.1|D22380 RICC10934A Rice callus Oryza sativa (jap... 208 6e-051
gb|BP185086.1|BP185086 BP185086 pNS rice panicle cDNA, flow... 208 6e-051
gb|U78782.1|OSU78782 Oryza sativa MADS box protein (OsMADS6... 208 6e-051
dbj|AK069103.1| Oryza sativa (japonica cultivar-group) cDNA... 208 6e-051
dbj|AP004178.3| Oryza sativa (japonica cultivar-group) geno... 208 6e-051
gb|AACV01005162.1| Oryza sativa (japonica cultivar-group) c... 208 6e-051
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 208 6e-051
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 208 6e-051
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 208 6e-051
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 208 6e-051
dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA... 206 2e-050
gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS ... 206 2e-050
emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-gro... 200 1e-048
emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC O... 200 1e-048
emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC O... 200 1e-048
emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B... 200 1e-048
ref|NT_107159.1| Oryza sativa (japonica cultivar-group) 200 1e-048
gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) c... 200 1e-048
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 200 1e-048
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 200 1e-048
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 200 1e-048
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 200 1e-048
dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA... 198 6e-048
gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-... 198 6e-048
gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) c... 198 6e-048
ref|XM_473638.1| Oryza sativa (japonica cultivar-group), p... 198 6e-048
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 198 6e-048
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 198 6e-048
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 198 6e-048
emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromoso... 198 6e-048
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 198 6e-048
gb|AACV01011125.1| Oryza sativa (japonica cultivar-group) c... 188 5e-045
gb|CB655394.1|CB655394 OSJNEc08M08.r OSJNEc Oryza sativa (j... 172 3e-040
gb|CB658195.1|CB658195 OSJNEc14A21.f OSJNEc Oryza sativa (j... 172 3e-040
gb|CB659436.1|CB659436 OSJNEc16G22.f OSJNEc Oryza sativa (j... 172 3e-040
gb|CF332627.1|CF332627 JMT--01-D10.b1 AtJMT-overexpressing ... 172 3e-040
gb|CF334759.1|CF334759 JMT--04-C18.b1 AtJMT-overexpressing ... 172 3e-040
dbj|AK070135.1| Oryza sativa (japonica cultivar-group) cDNA... 172 3e-040
gb|AY345224.1| Oryza sativa (japonica cultivar-group) trans... 172 3e-040
gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05... 172 3e-040
gb|AY551919.1| Oryza sativa (japonica cultivar-group) MADS-... 172 3e-040
gb|AACV01022000.1| Oryza sativa (japonica cultivar-group) c... 172 3e-040
ref|NM_197541.1| Oryza sativa (japonica cultivar-group) put... 172 3e-040
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 172 3e-040
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 172 3e-040
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 172 3e-040
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 172 3e-040
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 172 3e-040
gb|CF294135.1|CF294135 30DGS--03-I23.g1 Rice leaf plasmid c... 151 1e-033
gb|CF297258.1|CF297258 30DGS--07-P17.b1 Rice leaf plasmid c... 151 1e-033
dbj|AB003328.1| Oryza sativa (japonica cultivar-group) mRNA... 151 1e-033
dbj|AK067641.1| Oryza sativa (japonica cultivar-group) cDNA... 151 1e-033
dbj|AK104921.1| Oryza sativa (japonica cultivar-group) cDNA... 151 1e-033
gb|AY332476.1| Oryza sativa (japonica cultivar-group) MADS ... 151 1e-033
gb|AC098695.2| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
gb|AY551915.1| Oryza sativa (japonica cultivar-group) MADS-... 151 1e-033
gb|AACV01005781.1| Oryza sativa (japonica cultivar-group) c... 151 1e-033
ref|XM_468584.1| Oryza sativa (japonica cultivar-group), p... 151 1e-033
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 151 1e-033
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 151 1e-033
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 151 1e-033
gb|C75937.1|C75937 C75937 Rice callus Oryza sativa (japonic... 137 2e-029
gb|CF332154.1|CF332154 NACL--08-I21.g1 Rice callus plasmid ... 137 2e-029
dbj|AK069728.1| Oryza sativa (japonica cultivar-group) cDNA... 137 2e-029
dbj|AK070981.1| Oryza sativa (japonica cultivar-group) cDNA... 137 2e-029
gb|AC105732.3| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
gb|AC135158.2| Oryza sativa (japonica cultivar-group) chrom... 137 2e-029
gb|AACV01006102.1| Oryza sativa (japonica cultivar-group) c... 137 2e-029
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 137 2e-029
gb|D46933.1|D46933 RICS11905A Rice green shoot Oryza sativa... 135 7e-029
gb|AQ578837.1|AQ578837 nbxb0093F09f CUGI Rice BAC Library O... 133 3e-028
gb|AU225854.1|AU225854 AU225854 Oryza sativa Koshihikari pi... 133 3e-028
dbj|AK100263.1| Oryza sativa (japonica cultivar-group) cDNA... 133 3e-028
gb|U78891.2|OSU78891 Oryza sativa MADS box protein (MADS7) ... 133 3e-028
dbj|AP005529.3| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
gb|AY551921.1| Oryza sativa (japonica cultivar-group) MADS-... 133 3e-028
gb|AACV01018907.1| Oryza sativa (japonica cultivar-group) c... 133 3e-028
ref|XM_483487.1| Oryza sativa (japonica cultivar-group), mRNA 133 3e-028
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 133 3e-028
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
emb|Y15008.1|OSY15008 Oryza sativa mRNA for M79 protein 133 3e-028
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
gb|AU068508.1|AU068508 AU068508 Rice callus Oryza sativa (j... 131 1e-027
gb|U78892.1|OSU78892 Oryza sativa MADS box protein (OsMADS8... 125 7e-026
dbj|AK072867.1| Oryza sativa (japonica cultivar-group) cDNA... 125 7e-026
gb|AY332477.1| Oryza sativa (japonica cultivar-group) MADS ... 125 7e-026
gb|AACV01020364.1| Oryza sativa (japonica cultivar-group) c... 125 7e-026
gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromo... 125 7e-026
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 125 7e-026
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 125 7e-026
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 125 7e-026
gb|AQ271415.1|AQ271415 nbxb0025B08f CUGI Rice BAC Library O... 123 3e-025
gb|AQ330858.1|AQ330858 nbxb0048E10f CUGI Rice BAC Library O... 123 3e-025
gb|AQ575051.1|AQ575051 nbxb0086L17r CUGI Rice BAC Library O... 123 3e-025
gb|AU225127.1|AU225127 AU225127 Oryza sativa Koshihikari pi... 123 3e-025
gb|U78890.1|OSU78890 Oryza sativa MADS box protein (OsMADS5... 123 3e-025
dbj|AK064184.1| Oryza sativa (japonica cultivar-group) cDNA... 123 3e-025
gb|AACV01013077.1| Oryza sativa (japonica cultivar-group) c... 123 3e-025
dbj|AB026295.2| Oryza sativa (japonica cultivar-group) geno... 123 3e-025
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 123 3e-025
ref|NM_185637.2| Oryza sativa (japonica cultivar-group), mRNA 123 3e-025
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 123 3e-025
gb|CV720574.1|CV720574 YBH--01-B14.b1 Rice before heading y... 121 1e-024
gb|CV721367.1|CV721367 YBH--03-N20.b1 Rice before heading y... 121 1e-024
gb|CB652556.1|CB652556 OSJNEc02K24.f OSJNEc Oryza sativa (j... 115 6e-023
gb|CF306783.1|CF306783 HDA1--04-N10.g1 OsHDAC1-overexpressi... 115 6e-023
gb|CF315263.1|CF315263 HD--04-B23.b1 OsHDAC1-overexpressing... 115 6e-023
gb|CF322477.1|CF322477 HDN--01-C18.g1 OsHDAC1-overexpressin... 115 6e-023
gb|CF325684.1|CF325684 JMT1--03-O10.g1 AtJMT-overexpressing... 115 6e-023
dbj|AB003322.1| Oryza sativa (japonica cultivar-group) mRNA... 115 6e-023
dbj|AK064704.1| Oryza sativa (japonica cultivar-group) cDNA... 115 6e-023
dbj|AK070121.1| Oryza sativa (japonica cultivar-group) cDNA... 115 6e-023
dbj|AP004159.3| Oryza sativa (japonica cultivar-group) geno... 115 6e-023
dbj|AP005175.4| Oryza sativa (japonica cultivar-group) geno... 115 6e-023
gb|AACV01005456.1| Oryza sativa (japonica cultivar-group) c... 115 6e-023
gb|AACV01016746.1| Oryza sativa (japonica cultivar-group) c... 115 6e-023
ref|XM_467915.1| Oryza sativa (japonica cultivar-group), mRNA 115 6e-023
ref|XM_479092.1| Oryza sativa (japonica cultivar-group), mRNA 115 6e-023
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 115 6e-023
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 115 6e-023
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 115 6e-023
dbj|AB107957.1| Oryza sativa (japonica cultivar-group) RMD1... 115 6e-023
emb|AJ011675.1|OSA011675 Oryza sativa mRNA for MADS-box pro... 115 6e-023
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 115 6e-023
dbj|AK069331.1| Oryza sativa (japonica cultivar-group) cDNA... 111 1e-021
gb|AY332478.1| Oryza sativa (japonica cultivar-group) MADS ... 111 1e-021
dbj|AK121171.1| Oryza sativa (japonica cultivar-group) cDNA... 111 1e-021
gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 gen... 111 1e-021
gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 ... 111 1e-021
gb|AY551916.1| Oryza sativa (japonica cultivar-group) MADS-... 111 1e-021
gb|AACV01007934.1| Oryza sativa (japonica cultivar-group) c... 111 1e-021
ref|XM_469789.1| Oryza sativa (japonica cultivar-group), mRNA 111 1e-021
ref|NT_107186.1| Oryza sativa (japonica cultivar-group) 111 1e-021
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 111 1e-021
gb|AF377947.3| Oryza sativa (japonica cultivar-group) chrom... 111 1e-021
gb|AY177701.1| Oryza sativa (japonica cultivar-group) trans... 105 6e-020
dbj|AK070958.1| Oryza sativa (japonica cultivar-group) cDNA... 105 6e-020
gb|AY177693.1| Oryza sativa (japonica cultivar-group) trans... 105 6e-020
gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJN... 105 6e-020
gb|AY551913.1| Oryza sativa (japonica cultivar-group) MADS-... 105 6e-020
gb|AACV01002820.1| Oryza sativa (japonica cultivar-group) c... 105 6e-020
ref|XM_463559.1| Oryza sativa (japonica cultivar-group), p... 105 6e-020
ref|XM_483489.1| Oryza sativa (japonica cultivar-group), mRNA 105 6e-020
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 105 6e-020
dbj|AP003379.2| Oryza sativa (japonica cultivar-group) geno... 105 6e-020
dbj|AP003346.4| Oryza sativa (japonica cultivar-group) geno... 105 6e-020
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 105 6e-020
dbj|AB003324.1| Oryza sativa (japonica cultivar-group) mRNA... 103 2e-019
dbj|AK100227.1| Oryza sativa (japonica cultivar-group) cDNA... 103 2e-019
gb|AY551917.1| Oryza sativa (japonica cultivar-group) MADS-... 103 2e-019
gb|AY551922.1| Oryza sativa (japonica cultivar-group) MADS-... 103 2e-019
gb|AY551926.1| Oryza sativa (japonica cultivar-group) MADS-... 103 2e-019
ref|XM_469790.1| Oryza sativa (japonica cultivar-group), mRNA 103 2e-019
gb|D15657.2|D15657 RICC1032A Rice callus Oryza sativa (japo... 100 4e-018
gb|CV721444.1|CV721444 YBH--04-C11.b1 Rice before heading y... 96 6e-017
dbj|AP005174.1| Oryza sativa (japonica cultivar-group) chro... 96 6e-017
dbj|AP004762.3| Oryza sativa (japonica cultivar-group) geno... 96 6e-017
dbj|AP005148.3| Oryza sativa (japonica cultivar-group) geno... 96 6e-017
gb|AACV01018778.1| Oryza sativa (japonica cultivar-group) c... 96 6e-017
ref|XM_483124.1| Oryza sativa (japonica cultivar-group), mRNA 96 6e-017
dbj|AP006720.1| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
dbj|AP004049.2| Oryza sativa (japonica cultivar-group) geno... 94 2e-016
gb|AACV01003159.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
ref|XM_463804.1| Oryza sativa (japonica cultivar-group), mRNA 94 2e-016
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 94 2e-016
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|D47632.1|D47632 RICS13245A Rice green shoot Oryza sativa... 92 9e-016
gb|CV734296.1|CV734296 FLO--09-J13.g1 Rice flower lambda ph... 90 4e-015
gb|C74765.1|C74765 C74765 Rice cDNA from immature leaf incl... 88 1e-014
gb|C73896.1|C73896 C73896 Rice panicle (longer than 10cm) O... 86 6e-014
gb|AU029711.1|AU029711 AU029711 Rice panicle shorter than 3... 86 6e-014
gb|C73941.2|C73941 C73941 Rice panicle (longer than 10cm) O... 86 6e-014
gb|CD670941.1|CD670941 OsMR362 5MT resistant rice mutant cD... 86 6e-014
dbj|AB003323.1| Oryza sativa (japonica cultivar-group) mRNA... 86 6e-014
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 86 6e-014
gb|AACV01014909.1| Oryza sativa (japonica cultivar-group) c... 86 6e-014
dbj|AP004329.3| Oryza sativa (japonica cultivar-group) geno... 86 6e-014
dbj|AP005463.3| Oryza sativa (japonica cultivar-group) geno... 86 6e-014
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 86 6e-014
gb|C26796.1|C26796 C26796 Rice callus cDNA Oryza sativa (ja... 82 9e-013
gb|AU078632.1|AU078632 AU078632 Rice callus Oryza sativa (j... 80 4e-012
gb|AU100638.1|AU100638 AU100638 Rice callus Oryza sativa (j... 80 4e-012
gb|AF424549.1| Oryza sativa (japonica cultivar-group) MADS-... 78 1e-011
dbj|AK069317.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
gb|CA755986.1|CA755986 BR030032000_PLATE_E04_29_033.ab1 OA ... 76 6e-011
gb|AY177696.1| Oryza sativa (japonica cultivar-group) trans... 76 6e-011
gb|AY551923.1| Oryza sativa (japonica cultivar-group) MADS-... 76 6e-011
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 76 6e-011
dbj|AP003951.3| Oryza sativa (japonica cultivar-group) geno... 76 6e-011
gb|AACV01014097.1| Oryza sativa (japonica cultivar-group) c... 76 6e-011
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 76 6e-011
gb|CZ168542.1|CZ168542 UCDRGT395_5.1 UCD RGT Rice Insertion... 72 9e-010
gb|C74564.1|C74564 C74564 Rice panicle shorter than 3cm Ory... 72 9e-010
dbj|AP004766.1| Oryza sativa (japonica cultivar-group) chro... 72 9e-010
dbj|AB003325.1| Oryza sativa (japonica cultivar-group) mRNA... 72 9e-010
dbj|AP003759.2| Oryza sativa (japonica cultivar-group) geno... 72 9e-010
dbj|AK072683.1| Oryza sativa (japonica cultivar-group) cDNA... 72 9e-010
gb|AY551920.1| Oryza sativa (japonica cultivar-group) MADS-... 72 9e-010
dbj|AP004342.5| Oryza sativa (japonica cultivar-group) geno... 72 9e-010
gb|AACV01004772.1| Oryza sativa (japonica cultivar-group) c... 72 9e-010
gb|AACV01015031.1| Oryza sativa (japonica cultivar-group) c... 72 9e-010
ref|XM_472756.1| Oryza sativa (japonica cultivar-group), p... 72 9e-010
ref|XM_476392.1| Oryza sativa (japonica cultivar-group), mRNA 72 9e-010
dbj|AP006161.3| Oryza sativa (japonica cultivar-group) geno... 72 9e-010
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 72 9e-010
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 72 9e-010
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 72 9e-010
gb|AU068577.1|AU068577 AU068577 Rice callus Oryza sativa (j... 68 1e-008
gb|CF336890.1|CF336890 JMT--07-B20.b1 AtJMT-overexpressing ... 68 1e-008
gb|CV731070.1|CV731070 FLO--04-O21.g1 Rice flower lambda ph... 68 1e-008
dbj|AB003327.1| Oryza sativa (japonica cultivar-group) mRNA... 68 1e-008
dbj|AK066160.1| Oryza sativa (japonica cultivar-group) cDNA... 68 1e-008
gb|AY345221.1| Oryza sativa (japonica cultivar-group) trans... 68 1e-008
gb|AY345222.1| Oryza sativa (japonica cultivar-group) trans... 68 1e-008
gb|AC125471.3| Oryza sativa (japonica cultivar-group) chrom... 68 1e-008
gb|AACV01002956.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|AACV01006007.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
gb|AACV01009916.1| Oryza sativa (japonica cultivar-group) c... 68 1e-008
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 68 1e-008
ref|NT_079911.2| Oryza sativa (japonica cultivar-group) 68 1e-008
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 68 1e-008
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 68 1e-008
emb|AJ536158.1|OSA536158 Oryza sativa (japonica cultivar-gr... 68 1e-008
emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromoso... 68 1e-008
emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromoso... 68 1e-008
gb|C98962.1|C98962 C98962 Rice panicle at flowering stage O... 66 5e-008
dbj|AK100233.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
dbj|AK111776.1| Oryza sativa (japonica cultivar-group) cDNA... 66 5e-008
dbj|AP005545.3| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
gb|AACV01013335.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 66 5e-008
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|C72923.1|C72923 C72923 Rice panicle at flowering stage O... 64 2e-007
gb|AQ866444.1|AQ866444 nbeb0028G05f CUGI Rice BAC Library (... 60 3e-006
dbj|AP004322.1| Oryza sativa (japonica cultivar-group) chro... 60 3e-006
dbj|AK109522.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
dbj|AK111859.1| Oryza sativa (japonica cultivar-group) cDNA... 60 3e-006
gb|AY345223.2| Oryza sativa (japonica cultivar-group) trans... 60 3e-006
dbj|AP004836.2| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP004113.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
dbj|AP004741.3| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01003433.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
gb|AACV01013305.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|XM_464283.1| Oryza sativa (japonica cultivar-group), mRNA 60 3e-006
ref|NT_107176.1| Oryza sativa (japonica cultivar-group) 60 3e-006
dbj|AP003908.1| Oryza sativa (japonica cultivar-group) chro... 58 1e-005
gb|AY177694.1| Oryza sativa (japonica cultivar-group) trans... 58 1e-005
gb|AY345220.1| Oryza sativa (japonica cultivar-group) trans... 58 1e-005
dbj|AP005156.4| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
dbj|AP003736.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AACV01014099.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01016495.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AACV01018525.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
ref|XM_482530.1| Oryza sativa (japonica cultivar-group), mRNA 58 1e-005
dbj|AP003868.3| Oryza sativa (japonica cultivar-group) geno... 58 1e-005
gb|AC090974.1|AC090974 Oryza sativa (japonica cultivar-grou... 56 5e-005
dbj|AP003405.1| Oryza sativa (japonica cultivar-group) chro... 56 5e-005
dbj|AK070894.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
dbj|AK102927.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
gb|AY177697.1| Oryza sativa (japonica cultivar-group) trans... 56 5e-005
gb|AY177695.2| Oryza sativa (japonica cultivar-group) trans... 56 5e-005
gb|AY551924.1| Oryza sativa (japonica cultivar-group) MADS-... 56 5e-005
gb|AACV01002803.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|AACV01009230.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
ref|XM_463532.1| Oryza sativa (japonica cultivar-group), p... 56 5e-005
ref|XM_471721.1| Oryza sativa (japonica cultivar-group), p... 56 5e-005
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 56 5e-005
dbj|AP003561.2| Oryza sativa (japonica cultivar-group) geno... 56 5e-005
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 56 5e-005
emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromoso... 56 5e-005
gb|AU095354.1|AU095354 AU095354 Rice cDNA from immature lea... 52 8e-004
dbj|AB003326.1| Oryza sativa (japonica cultivar-group) mRNA... 52 8e-004
dbj|AP003910.1| Oryza sativa (japonica cultivar-group) chro... 52 8e-004
dbj|AK069122.1| Oryza sativa (japonica cultivar-group) cDNA... 52 8e-004
dbj|AP004566.3| Oryza sativa (japonica cultivar-group) geno... 52 8e-004
gb|AY551925.1| Oryza sativa (japonica cultivar-group) MADS-... 52 8e-004
gb|AACV01011126.1| Oryza sativa (japonica cultivar-group) c... 52 8e-004
gb|AACV01017125.1| Oryza sativa (japonica cultivar-group) c... 52 8e-004
ref|XM_479752.1| Oryza sativa (japonica cultivar-group), mRNA 52 8e-004
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 52 8e-004
gb|AACV01013369.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|D47001.1|D47001 RICS12021A Rice green shoot Oryza sativa... 48 0.013
gb|C91819.1|C91819 C91819 Rice panicle shorter than 3cm Ory... 48 0.013
dbj|AK111796.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.013
gb|AACV01009597.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
gb|AACV01012869.1| Oryza sativa (japonica cultivar-group) c... 48 0.013
dbj|AP000616.2| Oryza sativa (japonica cultivar-group) geno... 48 0.013
ref|NM_185350.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
ref|NT_079858.2| Oryza sativa (japonica cultivar-group) 48 0.013
ref|XM_550468.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.013
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 48 0.013
emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromoso... 48 0.013
gb|AQ258059.1|AQ258059 nbxb0019L09f CUGI Rice BAC Library O... 46 0.050
gb|AQ575165.1|AQ575165 nbxb0086H04f CUGI Rice BAC Library O... 46 0.050
dbj|AG212114.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.050
gb|CB666400.1|CB666400 OSJNEd13E17.f OSJNEd Oryza sativa (j... 46 0.050
gb|CB682181.1|CB682181 OSJNEf09D09.f OSJNEf Oryza sativa (j... 46 0.050
gb|CF309429.1|CF309429 ABF--03-J22.g1 ABF3-overexpressing t... 46 0.050
gb|CF322128.1|CF322128 HD--13-J23.b1 OsHDAC1-overexpressing... 46 0.050
gb|CF327296.1|CF327296 NACL--01-L16.g1 Rice callus plasmid ... 46 0.050
dbj|AP005010.1| Oryza sativa (japonica cultivar-group) chro... 46 0.050
gb|AY224482.1| Oryza sativa (japonica cultivar-group) isola... 46 0.050
emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC O... 46 0.050
gb|AY250075.1| Oryza sativa (japonica cultivar-group) MADS2... 46 0.050
gb|AY174093.1| Oryza sativa (japonica cultivar-group) MADS3... 46 0.050
gb|AY177702.1| Oryza sativa (japonica cultivar-group) trans... 46 0.050
dbj|AP004888.3| Oryza sativa (japonica cultivar-group) geno... 46 0.050
dbj|AP005751.3| Oryza sativa (japonica cultivar-group) geno... 46 0.050
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 46 0.050
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 46 0.050
dbj|AP003633.3| Oryza sativa (japonica cultivar-group) geno... 46 0.050
gb|AACV01005341.1| Oryza sativa (japonica cultivar-group) c... 46 0.050
gb|AACV01013366.1| Oryza sativa (japonica cultivar-group) c... 46 0.050
gb|AACV01014754.1| Oryza sativa (japonica cultivar-group) c... 46 0.050
gb|AACV01024998.1| Oryza sativa (japonica cultivar-group) c... 46 0.050
ref|XM_467621.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.050
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.050
gb|AQ050200.1|AQ050200 nbxb0003cD01r CUGI Rice BAC Library ... 44 0.20
gb|AZ128966.1|AZ128966 OSJNBb0068L22f CUGI Rice BAC Library... 44 0.20
dbj|AP003331.3| Oryza sativa (japonica cultivar-group) geno... 44 0.20
gb|AACV01000976.1| Oryza sativa (japonica cultivar-group) c... 44 0.20
ref|NM_183930.1| Oryza sativa (japonica cultivar-group), p... 44 0.20
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 44 0.20
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
>dbj|AK108568.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-D02, full
insert sequence
Length = 1511
Score = 281 bits (142), Expect = 5e-073
Identities = 196/214 (91%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 365 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 424
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 425 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 484
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccatt 443
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 485 gtcttctccagccgcggccgcctctacgagtacgccaacaacagtgtgaaatccaccgtt 544
Query: 444 gagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||||||||||| |||||||| |||||
Sbjct: 545 gagaggtacaagaaggcaaacagtgacacctcca 578
Score = 107 bits (54), Expect = 2e-020
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 691 ctgaagtcgagtacatgcagagaagggaaatggagttgcagaatgacaacttgtacttaa 750
||||||| ||||||||||||| ||||||| | ||| |||||||||||||| ||||| | |
Sbjct: 821 ctgaagttgagtacatgcagaaaagggaagttgagctgcagaatgacaacatgtacctga 880
Query: 751 ggagccgggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccat 810
||||| ||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||
Sbjct: 881 ggagcaaggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcat 940
Query: 811 cgacaagtga 820
| ||||||||
Sbjct: 941 caacaagtga 950
>gb|AY553724.1| Oryza sativa (japonica cultivar-group) MADS-like protein RMADS222
mRNA, complete cds
Length = 1051
Score = 281 bits (142), Expect = 5e-073
Identities = 196/214 (91%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 138 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 197
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 198 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 257
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccatt 443
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 258 gtcttctccagccgcggccgcctctacgagtacgccaacaacagtgtgaaatccaccgtt 317
Query: 444 gagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||||||||||| |||||||| |||||
Sbjct: 318 gagaggtacaagaaggcaaacagtgacacctcca 351
Score = 107 bits (54), Expect = 2e-020
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 691 ctgaagtcgagtacatgcagagaagggaaatggagttgcagaatgacaacttgtacttaa 750
||||||| ||||||||||||| ||||||| | ||| |||||||||||||| ||||| | |
Sbjct: 565 ctgaagttgagtacatgcagaaaagggaagttgagctgcagaatgacaacatgtacctga 624
Query: 751 ggagccgggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccat 810
||||| ||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||
Sbjct: 625 ggagcaaggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcat 684
Query: 811 cgacaagtga 820
| ||||||||
Sbjct: 685 caacaagtga 694
>ref|NM_188300.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 744
Score = 281 bits (142), Expect = 5e-073
Identities = 196/214 (91%)
Strand = Plus / Plus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 19 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 78
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 79 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 138
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggcaccatt 443
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct: 139 gtcttctccagccgcggccgcctctacgagtacgccaacaacagtgtgaaatccaccgtt 198
Query: 444 gagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||||||||||| |||||||| |||||
Sbjct: 199 gagaggtacaagaaggcaaacagtgacacctcca 232
Score = 107 bits (54), Expect = 2e-020
Identities = 111/130 (85%)
Strand = Plus / Plus
Query: 691 ctgaagtcgagtacatgcagagaagggaaatggagttgcagaatgacaacttgtacttaa 750
||||||| ||||||||||||| ||||||| | ||| |||||||||||||| ||||| | |
Sbjct: 446 ctgaagttgagtacatgcagaaaagggaagttgagctgcagaatgacaacatgtacctga 505
Query: 751 ggagccgggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccat 810
||||| ||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||
Sbjct: 506 ggagcaaggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcat 565
Query: 811 cgacaagtga 820
| ||||||||
Sbjct: 566 caacaagtga 575
>dbj|AK111723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027E19, full
insert sequence
Length = 1071
Score = 262 bits (132), Expect = 4e-067
Identities = 198/220 (90%)
Strand = Plus / Plus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 243 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 302
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 303 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 362
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggc 437
||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 363 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacagcgtgaaggaa 422
Query: 438 accattgagaggtacaagaaggcaaccagtgacaactcca 477
|| ||||||||||||||||| || | |||||||| |||||
Sbjct: 423 actattgagaggtacaagaaagccaacagtgacacctcca 462
Score = 145 bits (73), Expect = 7e-032
Identities = 238/293 (81%)
Strand = Plus / Plus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 492 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 551
Query: 570 aacagggccctgataggtgattctatcacaaccatgagccacaaggaacttaagcacttg 629
|||||| |||| |||||||| |||||| ||||||| ||||| ||||||||||| ||
Sbjct: 552 aacaggaccctagtaggtgataatatcaccaccatgaaccacagagaacttaagcagctg 611
Query: 630 gagactaggttagacaaagctctcggaaagattagagcaaaaaagaacgatgtgctgtgt 689
|| || | ||||||| || ||||||||||||||| |||||||| ||||||||
Sbjct: 612 gaaggcagactggacaaaggcctaggaaagattagagcacggaagaacgaattgctgtgt 671
Query: 690 tctgaagtcgagtacatgcagagaagggaaatggagttgcagaatgacaacttgtactta 749
||||| | ||||| |||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct: 672 gctgaaattgagtatatgcagagaagggaaacggagctgcagaatgacaacatgtactta 731
Query: 750 aggagccgggttgatgagaatgaaagggcacaacagacagcgaacatgatggg 802
| |||| |||| ||||| |||||| | || || |||| ||||||||||||
Sbjct: 732 aagagcaaagttgctgagagtgaaagaggactgcaaacagtgaacatgatggg 784
>dbj|AB232157.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
factor OsMADS58, complete cds
Length = 1181
Score = 262 bits (132), Expect = 4e-067
Identities = 198/220 (90%)
Strand = Plus / Plus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 243 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 302
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 303 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 362
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacagcgtgaagggc 437
||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 363 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacagcgtgaaggaa 422
Query: 438 accattgagaggtacaagaaggcaaccagtgacaactcca 477
|| ||||||||||||||||| || | |||||||| |||||
Sbjct: 423 actattgagaggtacaagaaagccaacagtgacacctcca 462
Score = 145 bits (73), Expect = 7e-032
Identities = 238/293 (81%)
Strand = Plus / Plus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 492 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 551
Query: 570 aacagggccctgataggtgattctatcacaaccatgagccacaaggaacttaagcacttg 629
|||||| |||| |||||||| |||||| ||||||| ||||| ||||||||||| ||
Sbjct: 552 aacaggaccctagtaggtgataatatcaccaccatgaaccacagagaacttaagcagctg 611
Query: 630 gagactaggttagacaaagctctcggaaagattagagcaaaaaagaacgatgtgctgtgt 689
|| || | ||||||| || ||||||||||||||| |||||||| ||||||||
Sbjct: 612 gaaggcagactggacaaaggcctaggaaagattagagcacggaagaacgaattgctgtgt 671
Query: 690 tctgaagtcgagtacatgcagagaagggaaatggagttgcagaatgacaacttgtactta 749
||||| | ||||| |||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct: 672 gctgaaattgagtatatgcagagaagggaaacggagctgcagaatgacaacatgtactta 731
Query: 750 aggagccgggttgatgagaatgaaagggcacaacagacagcgaacatgatggg 802
| |||| |||| ||||| |||||| | || || |||| ||||||||||||
Sbjct: 732 aagagcaaagttgctgagagtgaaagaggactgcaaacagtgaacatgatggg 784
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 863 cttcctgcagttcaacatcgtgcagcagcctcagttctattctcagcaggaggaccg 919
||||||||| ||||||||| |||| |||||||||| ||| || | |||||||||||
Sbjct: 839 cttcctgcaattcaacatcatgcatcagcctcagtattatcctgaacaggaggaccg 895
>gb|AACV01000383.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000383, whole
genome shotgun sequence
Length = 32294
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 20679 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 20620
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 20619 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 20560
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20559 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 20516
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 15159 caccgttgagaggtacaagaaggcaaacagtgacacctcca 15119
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 13214 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 13155
Query: 818 tga 820
|||
Sbjct: 13154 tga 13152
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 5565012 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 5564953
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 5564952 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 5564893
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564892 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 5564849
Score = 105 bits (53), Expect = 6e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| |||||| ||| | |||||||||| ||| | | | ||||| |||||||||||||||
Sbjct: 38575803 aagattgagataaagagaatcgagaacaagacgagccgtcaggtgaccttctgcaagcgc 38575862
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
| || || || || |||||||| ||||||||| || | ||||||||||| ||| ||||
Sbjct: 38575863 aggaatgggctgctgaagaaggcctacgagctcgccatactctgcgacgctgagatcgca 38575922
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagt 414
|||||||||||||||||||| || |||||||| ||||
Sbjct: 38575923 ctcatcgtcttctccagccgaggacgcctctatgagt 38575959
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 331 tcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttct 390
|||||||||||| ||||||| || |||||||||||| ||||| |||||| |||||||||
Sbjct: 40417627 tcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttct 40417686
Query: 391 cc 392
||
Sbjct: 40417687 cc 40417688
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 5559492 caccgttgagaggtacaagaaggcaaacagtgacacctcca 5559452
Score = 56.0 bits (28), Expect = 5e-005
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||| | ||||||||| | |||||| | ||||| ||||||| ||||||| | | |
Sbjct: 38397728 gagatcaagaggatcgagaactccaccaaccgccaggtgaccttctccaagcgcaggagc 38397669
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| ||||||||||||| |||| || ||| || |||||||||||||||| || ||
Sbjct: 38397668 gggatcctcaagaaggcccgcgagatcagcgtcctgtgcgacgccgaggtcggcgtcgtc 38397609
Query: 384 gtcttctccagc 395
|||||||||||
Sbjct: 38397608 atcttctccagc 38397597
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 5557547 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 5557488
Query: 818 tga 820
|||
Sbjct: 5557487 tga 5557485
Score = 44.1 bits (22), Expect = 0.20
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 345 gagctctccgtgctctgcgacgccgaggtcgcgctcatcgtc 386
|||||||| ||||||||||||||| | |||||| || |||||
Sbjct: 13347176 gagctctcggtgctctgcgacgcccaagtcgcggtcgtcgtc 13347217
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 345 gagctctccgtgctctgcgacg 366
||||||||||||||||||||||
Sbjct: 13340817 gagctctccgtgctctgcgacg 13340838
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 5564852 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 5564793
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 5564792 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 5564733
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564732 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 5564689
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 5559332 caccgttgagaggtacaagaaggcaaacagtgacacctcca 5559292
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 5557387 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 5557328
Query: 818 tga 820
|||
Sbjct: 5557327 tga 5557325
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0489A05
Length = 158815
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 32703 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 32644
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 32643 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 32584
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32583 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 32540
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 27183 caccgttgagaggtacaagaaggcaaacagtgacacctcca 27143
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 25238 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 25179
Query: 818 tga 820
|||
Sbjct: 25178 tga 25176
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1015E06
Length = 164583
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 164070 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 164011
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 164010 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 163951
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163950 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 163907
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 158550 caccgttgagaggtacaagaaggcaaacagtgacacctcca 158510
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 156605 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 156546
Query: 818 tga 820
|||
Sbjct: 156545 tga 156543
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 5556193 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 5556134
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 5556133 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 5556074
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5556073 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 5556030
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 5550673 caccgttgagaggtacaagaaggcaaacagtgacacctcca 5550633
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 5548728 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 5548669
Query: 818 tga 820
|||
Sbjct: 5548668 tga 5548666
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 5556193 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 5556134
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 5556133 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 5556074
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5556073 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 5556030
Score = 105 bits (53), Expect = 6e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| |||||| ||| | |||||||||| ||| | | | ||||| |||||||||||||||
Sbjct: 37964020 aagattgagataaagagaatcgagaacaagacgagccgtcaggtgaccttctgcaagcgc 37964079
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
| || || || || |||||||| ||||||||| || | ||||||||||| ||| ||||
Sbjct: 37964080 aggaatgggctgctgaagaaggcctacgagctcgccatactctgcgacgctgagatcgca 37964139
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagt 414
|||||||||||||||||||| || |||||||| ||||
Sbjct: 37964140 ctcatcgtcttctccagccgaggacgcctctatgagt 37964176
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 331 tcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttct 390
|||||||||||| ||||||| || |||||||||||| ||||| |||||| |||||||||
Sbjct: 39821587 tcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttct 39821646
Query: 391 cc 392
||
Sbjct: 39821647 cc 39821648
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 5550673 caccgttgagaggtacaagaaggcaaacagtgacacctcca 5550633
Score = 56.0 bits (28), Expect = 5e-005
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||| | ||||||||| | |||||| | ||||| ||||||| ||||||| | | |
Sbjct: 37788542 gagatcaagaggatcgagaactccaccaaccgccaggtgaccttctccaagcgcaggagc 37788483
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| ||||||||||||| |||| || ||| || |||||||||||||||| || ||
Sbjct: 37788482 gggatcctcaagaaggcccgcgagatcagcgtcctgtgcgacgccgaggtcggcgtcgtc 37788423
Query: 384 gtcttctccagc 395
|||||||||||
Sbjct: 37788422 atcttctccagc 37788411
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 5548728 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 5548669
Query: 818 tga 820
|||
Sbjct: 5548668 tga 5548666
Score = 44.1 bits (22), Expect = 0.20
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 345 gagctctccgtgctctgcgacgccgaggtcgcgctcatcgtc 386
|||||||| ||||||||||||||| | |||||| || |||||
Sbjct: 13224851 gagctctcggtgctctgcgacgcccaagtcgcggtcgtcgtc 13224892
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 345 gagctctccgtgctctgcgacg 366
||||||||||||||||||||||
Sbjct: 13218489 gagctctccgtgctctgcgacg 13218510
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 238 bits (120), Expect = 6e-060
Identities = 153/164 (93%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 5567230 gagataaagcggatcgagaacacgacgaaccggcaggtgaccttctgcaagcgccgcaat 5567171
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|||||||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||
Sbjct: 5567170 ggcctcctgaagaaggcgtacgagctgtccgtcctctgcgacgccgaggttgccctcatc 5567111
Query: 384 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5567110 gtcttctccagccgcggccgcctctacgagtacgccaacaacag 5567067
Score = 105 bits (53), Expect = 6e-020
Identities = 131/157 (83%)
Strand = Plus / Plus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| |||||| ||| | |||||||||| ||| | | | ||||| |||||||||||||||
Sbjct: 38495133 aagattgagataaagagaatcgagaacaagacgagccgtcaggtgaccttctgcaagcgc 38495192
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
| || || || || |||||||| ||||||||| || | ||||||||||| ||| ||||
Sbjct: 38495193 aggaatgggctgctgaagaaggcctacgagctcgccatactctgcgacgctgagatcgca 38495252
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagt 414
|||||||||||||||||||| || |||||||| ||||
Sbjct: 38495253 ctcatcgtcttctccagccgaggacgcctctatgagt 38495289
Score = 67.9 bits (34), Expect = 1e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 331 tcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttct 390
|||||||||||| ||||||| || |||||||||||| ||||| |||||| |||||||||
Sbjct: 40336957 tcaagaaggcgttcgagctcgccctgctctgcgacgtggaggtggcgctcctcgtcttct 40337016
Query: 391 cc 392
||
Sbjct: 40337017 cc 40337018
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 437 caccattgagaggtacaagaaggcaaccagtgacaactcca 477
|||| ||||||||||||||||||||| |||||||| |||||
Sbjct: 5561710 caccgttgagaggtacaagaaggcaaacagtgacacctcca 5561670
Score = 56.0 bits (28), Expect = 5e-005
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 264 gagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaac 323
||||||||| | ||||||||| | |||||| | ||||| ||||||| ||||||| | | |
Sbjct: 38317058 gagatcaagaggatcgagaactccaccaaccgccaggtgaccttctccaagcgcaggagc 38316999
Query: 324 ggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatc 383
|| ||||||||||||| |||| || ||| || |||||||||||||||| || ||
Sbjct: 38316998 gggatcctcaagaaggcccgcgagatcagcgtcctgtgcgacgccgaggtcggcgtcgtc 38316939
Query: 384 gtcttctccagc 395
|||||||||||
Sbjct: 38316938 atcttctccagc 38316927
Score = 54.0 bits (27), Expect = 2e-004
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 758 ggttgatgagaatgaaagggcacaacagacagcgaacatgatgggggcaccatcgacaag 817
||||| ||||||||| |||| ||| ||| || |||||||||||||||| |||| |||||
Sbjct: 5559765 ggttgttgagaatgagaggggacagcagccactgaacatgatgggggcagcatcaacaag 5559706
Query: 818 tga 820
|||
Sbjct: 5559705 tga 5559703
Score = 44.1 bits (22), Expect = 0.20
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 345 gagctctccgtgctctgcgacgccgaggtcgcgctcatcgtc 386
|||||||| ||||||||||||||| | |||||| || |||||
Sbjct: 13349394 gagctctcggtgctctgcgacgcccaagtcgcggtcgtcgtc 13349435
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 345 gagctctccgtgctctgcgacg 366
||||||||||||||||||||||
Sbjct: 13343035 gagctctccgtgctctgcgacg 13343056
>gb|CV734295.1|CV734295 FLO--09-J13.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--09-J13,
mRNA sequence
Length = 519
Score = 220 bits (111), Expect = 2e-054
Identities = 159/175 (90%)
Strand = Plus / Plus
Query: 303 accttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgc 362
||||||||||||||||||| ||| || |||||||||||||| ||||||||||||||||||
Sbjct: 50 accttctgcaagcgccgcagcgggctactcaagaaggcgtatgagctctccgtgctctgc 109
Query: 363 gacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaac 422
|| ||||||||||| ||| |||||||||||||||| |||||||||||||||||| |||||
Sbjct: 110 gatgccgaggtcgccctcgtcgtcttctccagccgtggccgcctctacgagtactccaac 169
Query: 423 aacagcgtgaagggcaccattgagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||||| || ||||||||||||||||| || | |||||||| |||||
Sbjct: 170 aacagcgtgaaggaaactattgagaggtacaagaaagccaacagtgacacctcca 224
Score = 139 bits (70), Expect = 4e-030
Identities = 202/246 (82%)
Strand = Plus / Plus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 254 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 313
Query: 570 aacagggccctgataggtgattctatcacaaccatgagccacaaggaacttaagcacttg 629
|||||| |||| |||||||| |||||| ||||||| ||||| ||||||||||| ||
Sbjct: 314 aacaggaccctagtaggtgataatatcaccaccatgaaccacagagaacttaagcagctg 373
Query: 630 gagactaggttagacaaagctctcggaaagattagagcaaaaaagaacgatgtgctgtgt 689
|| || | ||||||| || ||||||||||||||| |||||||| ||||||||
Sbjct: 374 gaaggcagactggacaaaggcctaggaaagattagagcacggaagaacgaattgctgtgt 433
Query: 690 tctgaagtcgagtacatgcagagaagggaaatggagttgcagaatgacaacttgtactta 749
||||| | ||||| |||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct: 434 gctgaaattgagtatatgcagagaagggaaacggagctgcagaatgacaacatgtactta 493
Query: 750 aggagc 755
| ||||
Sbjct: 494 aagagc 499
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0015G13, complete sequence
Length = 143966
Score = 218 bits (110), Expect = 6e-054
Identities = 155/170 (91%)
Strand = Plus / Minus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 77127 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 77068
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 77067 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 77008
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 77007 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 76958
Score = 188 bits (95), Expect = 5e-045
Identities = 122/131 (93%)
Strand = Plus / Minus
Query: 297 caggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtg 356
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| ||
Sbjct: 53734 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 53675
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 53674 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 53615
Query: 417 gccaacaacag 427
||||||||||
Sbjct: 53614 tccaacaacag 53604
Score = 52.0 bits (26), Expect = 8e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 68271 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 68212
Query: 570 aacagg 575
||||||
Sbjct: 68211 aacagg 68206
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 cagcgtgaagggcaccattgagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||| || ||||||||||||||||| || | |||||||| |||||
Sbjct: 68892 cagcgtgaaggaaactattgagaggtacaagaaagccaacagtgacacctcca 68840
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 863 cttcctgcagttcaacatcgtgcagcagcctcagttctattctcagcaggaggaccg 919
||||||||| ||||||||| |||| |||||||||| ||| || | |||||||||||
Sbjct: 67446 cttcctgcaattcaacatcatgcatcagcctcagtattatcctgaacaggaggaccg 67390
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 716 ggaaatggagttgcagaatgacaacttgtacttaaggagc 755
||||| |||| |||||||||||||| ||||||||| ||||
Sbjct: 67771 ggaaacggagctgcagaatgacaacatgtacttaaagagc 67732
Score = 44.1 bits (22), Expect = 0.20
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 684 ctgtgttctgaagtcgagtacatgcagagaaggg 717
|||||| ||||| | |||||||||||||||||||
Sbjct: 46791 ctgtgtgctgaaattgagtacatgcagagaaggg 46758
>gb|AACV01011127.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011127, whole
genome shotgun sequence
Length = 7784
Score = 218 bits (110), Expect = 6e-054
Identities = 155/170 (91%)
Strand = Plus / Minus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 1303 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 1244
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 1243 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 1184
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 1183 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 1134
>ref|NT_107224.1| Oryza sativa (japonica cultivar-group)
Length = 975437
Score = 218 bits (110), Expect = 6e-054
Identities = 155/170 (91%)
Strand = Plus / Minus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 908598 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 908539
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 908538 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 908479
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 908478 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 908429
Score = 188 bits (95), Expect = 5e-045
Identities = 122/131 (93%)
Strand = Plus / Minus
Query: 297 caggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtg 356
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| ||
Sbjct: 885205 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 885146
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 885145 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 885086
Query: 417 gccaacaacag 427
||||||||||
Sbjct: 885085 tccaacaacag 885075
Score = 52.0 bits (26), Expect = 8e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 899742 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 899683
Query: 570 aacagg 575
||||||
Sbjct: 899682 aacagg 899677
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 cagcgtgaagggcaccattgagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||| || ||||||||||||||||| || | |||||||| |||||
Sbjct: 900363 cagcgtgaaggaaactattgagaggtacaagaaagccaacagtgacacctcca 900311
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 863 cttcctgcagttcaacatcgtgcagcagcctcagttctattctcagcaggaggaccg 919
||||||||| ||||||||| |||| |||||||||| ||| || | |||||||||||
Sbjct: 898917 cttcctgcaattcaacatcatgcatcagcctcagtattatcctgaacaggaggaccg 898861
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 716 ggaaatggagttgcagaatgacaacttgtacttaaggagc 755
||||| |||| |||||||||||||| ||||||||| ||||
Sbjct: 899242 ggaaacggagctgcagaatgacaacatgtacttaaagagc 899203
Score = 44.1 bits (22), Expect = 0.20
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 684 ctgtgttctgaagtcgagtacatgcagagaaggg 717
|||||| ||||| | |||||||||||||||||||
Sbjct: 878262 ctgtgtgctgaaattgagtacatgcagagaaggg 878229
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 218 bits (110), Expect = 6e-054
Identities = 155/170 (91%)
Strand = Plus / Minus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 6266463 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 6266404
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 6266403 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 6266344
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 6266343 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 6266294
Score = 188 bits (95), Expect = 5e-045
Identities = 122/131 (93%)
Strand = Plus / Minus
Query: 297 caggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtg 356
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| ||
Sbjct: 6240962 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 6240903
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 6240902 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 6240843
Query: 417 gccaacaacag 427
||||||||||
Sbjct: 6240842 tccaacaacag 6240832
Score = 52.0 bits (26), Expect = 8e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 6257726 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 6257667
Query: 570 aacagg 575
||||||
Sbjct: 6257666 aacagg 6257661
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 cagcgtgaagggcaccattgagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||| || ||||||||||||||||| || | |||||||| |||||
Sbjct: 6258347 cagcgtgaaggaaactattgagaggtacaagaaagccaacagtgacacctcca 6258295
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 863 cttcctgcagttcaacatcgtgcagcagcctcagttctattctcagcaggaggaccg 919
||||||||| ||||||||| |||| |||||||||| ||| || | |||||||||||
Sbjct: 6256901 cttcctgcaattcaacatcatgcatcagcctcagtattatcctgaacaggaggaccg 6256845
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 716 ggaaatggagttgcagaatgacaacttgtacttaaggagc 755
||||| |||| |||||||||||||| ||||||||| ||||
Sbjct: 6257226 ggaaacggagctgcagaatgacaacatgtacttaaagagc 6257187
Score = 44.1 bits (22), Expect = 0.20
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 684 ctgtgttctgaagtcgagtacatgcagagaaggg 717
|||||| ||||| | |||||||||||||||||||
Sbjct: 6234019 ctgtgtgctgaaattgagtacatgcagagaaggg 6233986
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 218 bits (110), Expect = 6e-054
Identities = 155/170 (91%)
Strand = Plus / Minus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 6266463 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 6266404
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 6266403 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 6266344
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 6266343 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 6266294
Score = 188 bits (95), Expect = 5e-045
Identities = 122/131 (93%)
Strand = Plus / Minus
Query: 297 caggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtg 356
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| ||
Sbjct: 6240962 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 6240903
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 6240902 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 6240843
Query: 417 gccaacaacag 427
||||||||||
Sbjct: 6240842 tccaacaacag 6240832
Score = 65.9 bits (33), Expect = 5e-008
Identities = 114/141 (80%)
Strand = Plus / Plus
Query: 255 ggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaag 314
||||||| ||||||||| | ||||||||| |||| ||| ||||||| || |||| |||
Sbjct: 20269058 ggcaagatcgagatcaagaggatcgagaactcgacgaaccggcaggtgacgttctcgaag 20269117
Query: 315 cgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtc 374
|||||| ||| | ||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 20269118 cgccgcgccgggatactcaagaaggcccgcgagatcggcgtgctctgcgacgccgaggtc 20269177
Query: 375 gcgctcatcgtcttctccagc 395
| || || |||||||||||
Sbjct: 20269178 ggcgtcgtcatcttctccagc 20269198
Score = 52.0 bits (26), Expect = 8e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 6257726 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 6257667
Query: 570 aacagg 575
||||||
Sbjct: 6257666 aacagg 6257661
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 cagcgtgaagggcaccattgagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||| || ||||||||||||||||| || | |||||||| |||||
Sbjct: 6258347 cagcgtgaaggaaactattgagaggtacaagaaagccaacagtgacacctcca 6258295
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 863 cttcctgcagttcaacatcgtgcagcagcctcagttctattctcagcaggaggaccg 919
||||||||| ||||||||| |||| |||||||||| ||| || | |||||||||||
Sbjct: 6256901 cttcctgcaattcaacatcatgcatcagcctcagtattatcctgaacaggaggaccg 6256845
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 716 ggaaatggagttgcagaatgacaacttgtacttaaggagc 755
||||| |||| |||||||||||||| ||||||||| ||||
Sbjct: 6257226 ggaaacggagctgcagaatgacaacatgtacttaaagagc 6257187
Score = 44.1 bits (22), Expect = 0.20
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 684 ctgtgttctgaagtcgagtacatgcagagaaggg 717
|||||| ||||| | |||||||||||||||||||
Sbjct: 6234019 ctgtgtgctgaaattgagtacatgcagagaaggg 6233986
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 218 bits (110), Expect = 6e-054
Identities = 155/170 (91%)
Strand = Plus / Minus
Query: 258 aagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgc 317
|||| ||||||||||||||||||||||||||| ||| | || || |||||||||||||||
Sbjct: 6375388 aagattgagatcaagcgcatcgagaacacgacgaaccgtcaagtgaccttctgcaagcgc 6375329
Query: 318 cgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcg 377
|||| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 6375328 cgcagcgggctactcaagaaggcgtatgagctctccgtgctctgcgatgccgaggtcgcc 6375269
Query: 378 ctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacag 427
||| |||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 6375268 ctcgtcgtcttctccagccgtggccgcctctacgagtactccaacaacag 6375219
Score = 188 bits (95), Expect = 5e-045
Identities = 122/131 (93%)
Strand = Plus / Minus
Query: 297 caggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccgtg 356
||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||| ||
Sbjct: 6351995 caggtcaccttctgcaagcgctgcaacgggctactcaagaaggcgtatgagctctccatg 6351936
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 6351935 ctctgcgatgccgaggttgccctcatcgtcttctccagccgcggccgcctctacgagtac 6351876
Query: 417 gccaacaacag 427
||||||||||
Sbjct: 6351875 tccaacaacag 6351865
Score = 65.9 bits (33), Expect = 5e-008
Identities = 114/141 (80%)
Strand = Plus / Plus
Query: 255 ggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaag 314
||||||| ||||||||| | ||||||||| |||| ||| ||||||| || |||| |||
Sbjct: 20615371 ggcaagatcgagatcaagaggatcgagaactcgacgaaccggcaggtgacgttctcgaag 20615430
Query: 315 cgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtc 374
|||||| ||| | ||||||||||| |||| || ||||||||||||||||||||||
Sbjct: 20615431 cgccgcgccgggatactcaagaaggcccgcgagatcggcgtgctctgcgacgccgaggtc 20615490
Query: 375 gcgctcatcgtcttctccagc 395
| || || |||||||||||
Sbjct: 20615491 ggcgtcgtcatcttctccagc 20615511
Score = 52.0 bits (26), Expect = 8e-004
Identities = 56/66 (84%)
Strand = Plus / Minus
Query: 510 cagcattacaagcaggaatctgctaggctgaggcagcagatcgttaacttgcagaactcc 569
||||| ||| |||||||| |||||| ||||| ||| |||||| ||| |||||||||||
Sbjct: 6366532 cagcactaccagcaggaagctgctaagctgaagcaacagatcaccaacctgcagaactcc 6366473
Query: 570 aacagg 575
||||||
Sbjct: 6366472 aacagg 6366467
Score = 50.1 bits (25), Expect = 0.003
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 425 cagcgtgaagggcaccattgagaggtacaagaaggcaaccagtgacaactcca 477
||||||||||| || ||||||||||||||||| || | |||||||| |||||
Sbjct: 6367153 cagcgtgaaggaaactattgagaggtacaagaaagccaacagtgacacctcca 6367101
Score = 50.1 bits (25), Expect = 0.003
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 863 cttcctgcagttcaacatcgtgcagcagcctcagttctattctcagcaggaggaccg 919
||||||||| ||||||||| |||| |||||||||| ||| || | |||||||||||
Sbjct: 6365707 cttcctgcaattcaacatcatgcatcagcctcagtattatcctgaacaggaggaccg 6365651
Score = 48.1 bits (24), Expect = 0.013
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 716 ggaaatggagttgcagaatgacaacttgtacttaaggagc 755
||||| |||| |||||||||||||| ||||||||| ||||
Sbjct: 6366032 ggaaacggagctgcagaatgacaacatgtacttaaagagc 6365993
Score = 44.1 bits (22), Expect = 0.20
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 684 ctgtgttctgaagtcgagtacatgcagagaaggg 717
|||||| ||||| | |||||||||||||||||||
Sbjct: 6345052 ctgtgtgctgaaattgagtacatgcagagaaggg 6345019
>gb|AY551912.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS206
mRNA, complete cds
Length = 914
Score = 214 bits (108), Expect = 9e-053
Identities = 185/210 (88%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 156 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 215
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 216 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 275
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacagc---gt 430
|| |||||||||||||||||||| |||||||||||||||||| ||||||||||| ||
Sbjct: 276 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaacagcagtgt 335
Query: 431 gaagggcaccattgagaggtacaagaaggc 460
||||| || ||||| ||||||||||||||
Sbjct: 336 gaaggctacaattgacaggtacaagaaggc 365
>gb|D22380.1|D22380 RICC10934A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10934_1A, mRNA sequence
Length = 358
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 135 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 194
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 195 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 254
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 255 tccagccgcggcaagctctacgagt 279
>gb|BP185086.1|BP185086 BP185086 pNS rice panicle cDNA, flowering stage Oryza sativa
(japonica cultivar-group) cDNA clone pNS-YP13, mRNA
sequence
Length = 670
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 139 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 198
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 199 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 258
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 259 tccagccgcggcaagctctacgagt 283
>gb|U78782.1|OSU78782 Oryza sativa MADS box protein (OsMADS6) mRNA, complete cds
Length = 1043
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 58 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 117
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 118 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 177
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 178 tccagccgcggcaagctctacgagt 202
>dbj|AK069103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006N09, full
insert sequence
Length = 1134
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 158 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 217
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 218 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 277
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 278 tccagccgcggcaagctctacgagt 302
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1123_G04
Length = 124666
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 22080 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 22139
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 22140 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 22199
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 22200 tccagccgcggcaagctctacgagt 22224
>gb|AACV01005162.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005162,
whole genome shotgun sequence
Length = 29737
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Minus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 985 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 926
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 925 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 866
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 865 tccagccgcggcaagctctacgagt 841
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 3059627 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 3059686
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 3059687 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 3059746
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 3059747 tccagccgcggcaagctctacgagt 3059771
Score = 115 bits (58), Expect = 6e-023
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 295 ggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccg 354
||||||||||||||| ||||||||| |||||| |||||||||| | ||||||||||
Sbjct: 7222718 ggcaggtcaccttctccaagcgccggcgcggcctgttcaagaaggccgaggagctctccg 7222777
Query: 355 tgctctgcgacgccgaggtcgcgctcatcgtcttctcc 392
|||||||||||||||| |||||||||||||||||||||
Sbjct: 7222778 tgctctgcgacgccgacgtcgcgctcatcgtcttctcc 7222815
Score = 46.1 bits (23), Expect = 0.050
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 293 caggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctc 352
||||||||| || |||| ||||| || ||||| || || ||||||||| | ||||| ||
Sbjct: 5640539 caggcaggtgacgttctcgaagcgtcggaacgggcttctgaagaaggcgaaggagctatc 5640598
Query: 353 cgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagc 395
| | |||||||| || ||||||| || ||||||||||||||
Sbjct: 5640599 catcctctgcgatgcggaggtcggccttgtcgtcttctccagc 5640641
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 14323323 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 14323382
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 14323383 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 14323442
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 14323443 tccagccgcggcaagctctacgagt 14323467
Score = 115 bits (58), Expect = 6e-023
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 295 ggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccg 354
||||||||||||||| ||||||||| |||||| |||||||||| | ||||||||||
Sbjct: 18646972 ggcaggtcaccttctccaagcgccggcgcggcctgttcaagaaggccgaggagctctccg 18647031
Query: 355 tgctctgcgacgccgaggtcgcgctcatcgtcttctcc 392
|||||||||||||||| |||||||||||||||||||||
Sbjct: 18647032 tgctctgcgacgccgacgtcgcgctcatcgtcttctcc 18647069
Score = 71.9 bits (36), Expect = 9e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 8654582 ctctgcgacgccgaggtcggcctcatgatcttctccagcaccggccgcctctacgagtac 8654641
Score = 46.1 bits (23), Expect = 0.050
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 293 caggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctc 352
||||||||| || |||| ||||| || ||||| || || ||||||||| | ||||| ||
Sbjct: 16971461 caggcaggtgacgttctcgaagcgtcggaacgggcttctgaagaaggcgaaggagctatc 16971520
Query: 353 cgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagc 395
| | |||||||| || ||||||| || ||||||||||||||
Sbjct: 16971521 catcctctgcgatgcggaggtcggccttgtcgtcttctccagc 16971563
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 27776387 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 27776446
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 27776447 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 27776506
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 27776507 tccagccgcggcaagctctacgagt 27776531
Score = 115 bits (58), Expect = 6e-023
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 295 ggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccg 354
||||||||||||||| ||||||||| |||||| |||||||||| | ||||||||||
Sbjct: 32100036 ggcaggtcaccttctccaagcgccggcgcggcctgttcaagaaggccgaggagctctccg 32100095
Query: 355 tgctctgcgacgccgaggtcgcgctcatcgtcttctcc 392
|||||||||||||||| |||||||||||||||||||||
Sbjct: 32100096 tgctctgcgacgccgacgtcgcgctcatcgtcttctcc 32100133
Score = 93.7 bits (47), Expect = 2e-016
Identities = 113/135 (83%)
Strand = Plus / Plus
Query: 276 atcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctcctcaag 335
|||||| || |||| | ||||||||| || |||| |||||||| | || || || |||
Sbjct: 208440 atcgaggacgcgacgagcaggcaggtgacgttctcgaagcgccggagtgggctgctgaag 208499
Query: 336 aaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagc 395
||||||| |||||| || |||||||||||||||||||| || |||||||||||||||
Sbjct: 208500 aaggcgttcgagctgtcggtgctctgcgacgccgaggttgctctcatcgtcttctcccct 208559
Query: 396 cgcggccgcctctac 410
|||||||||||||||
Sbjct: 208560 cgcggccgcctctac 208574
Score = 71.9 bits (36), Expect = 9e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 22107646 ctctgcgacgccgaggtcggcctcatgatcttctccagcaccggccgcctctacgagtac 22107705
Score = 60.0 bits (30), Expect = 3e-006
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 255 ggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaag 314
||||||| ||||||||| | ||||||||| |||| ||||||||||| || |||| |||
Sbjct: 3924688 ggcaagatcgagatcaagaggatcgagaacgcgacgaacaggcaggtgacattctcgaag 3924629
Query: 315 cgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgcc 368
| || || || || ||||||||| |||||||| |||||||||||||||||
Sbjct: 3924628 aggcggggagggctactgaagaaggcgaacgagctcgccgtgctctgcgacgcc 3924575
Score = 46.1 bits (23), Expect = 0.050
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 293 caggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctc 352
||||||||| || |||| ||||| || ||||| || || ||||||||| | ||||| ||
Sbjct: 30424525 caggcaggtgacgttctcgaagcgtcggaacgggcttctgaagaaggcgaaggagctatc 30424584
Query: 353 cgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagc 395
| | |||||||| || ||||||| || ||||||||||||||
Sbjct: 30424585 catcctctgcgatgcggaggtcggccttgtcgtcttctccagc 30424627
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 208 bits (105), Expect = 6e-051
Identities = 135/145 (93%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 27894628 aagcgcatcgagaacaagatcaacaggcaggtcaccttctccaagcgccgcaacggcctc 27894687
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct: 27894688 ctcaagaaggcctacgagctgtccgttctctgcgacgccgaggtcgcgctcatcatcttc 27894747
Query: 390 tccagccgcggccgcctctacgagt 414
|||||||||||| ||||||||||
Sbjct: 27894748 tccagccgcggcaagctctacgagt 27894772
Score = 115 bits (58), Expect = 6e-023
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 295 ggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccg 354
||||||||||||||| ||||||||| |||||| |||||||||| | ||||||||||
Sbjct: 32057719 ggcaggtcaccttctccaagcgccggcgcggcctgttcaagaaggccgaggagctctccg 32057778
Query: 355 tgctctgcgacgccgaggtcgcgctcatcgtcttctcc 392
|||||||||||||||| |||||||||||||||||||||
Sbjct: 32057779 tgctctgcgacgccgacgtcgcgctcatcgtcttctcc 32057816
Score = 93.7 bits (47), Expect = 2e-016
Identities = 113/135 (83%)
Strand = Plus / Plus
Query: 276 atcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctcctcaag 335
|||||| || |||| | ||||||||| || |||| |||||||| | || || || |||
Sbjct: 199374 atcgaggacgcgacgagcaggcaggtgacgttctcgaagcgccggagtgggctgctgaag 199433
Query: 336 aaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagc 395
||||||| |||||| || |||||||||||||||||||| || |||||||||||||||
Sbjct: 199434 aaggcgttcgagctgtcggtgctctgcgacgccgaggttgctctcatcgtcttctcccct 199493
Query: 396 cgcggccgcctctac 410
|||||||||||||||
Sbjct: 199494 cgcggccgcctctac 199508
Score = 71.9 bits (36), Expect = 9e-010
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagtac 416
||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 22314443 ctctgcgacgccgaggtcggcctcatgatcttctccagcaccggccgcctctacgagtac 22314502
Score = 60.0 bits (30), Expect = 3e-006
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 255 ggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaag 314
||||||| ||||||||| | ||||||||| |||| ||||||||||| || |||| |||
Sbjct: 3836697 ggcaagatcgagatcaagaggatcgagaacgcgacgaacaggcaggtgacattctcgaag 3836638
Query: 315 cgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgcc 368
| || || || || ||||||||| |||||||| |||||||||||||||||
Sbjct: 3836637 aggcggggagggctactgaagaaggcgaacgagctcgccgtgctctgcgacgcc 3836584
Score = 46.1 bits (23), Expect = 0.050
Identities = 83/103 (80%)
Strand = Plus / Plus
Query: 293 caggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctc 352
||||||||| || |||| ||||| || ||||| || || ||||||||| | ||||| ||
Sbjct: 30475540 caggcaggtgacgttctcgaagcgtcggaacgggcttctgaagaaggcgaaggagctatc 30475599
Query: 353 cgtgctctgcgacgccgaggtcgcgctcatcgtcttctccagc 395
| | |||||||| || ||||||| || ||||||||||||||
Sbjct: 30475600 catcctctgcgatgcggaggtcggccttgtcgtcttctccagc 30475642
>dbj|AK070425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050A03, full
insert sequence
Length = 1214
Score = 206 bits (104), Expect = 2e-050
Identities = 184/210 (87%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 74 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 133
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 134 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 193
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacagc---gt 430
|| |||||||||||||||||||| |||||||||||||||||| ||||||||| | ||
Sbjct: 194 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaacaacaatgt 253
Query: 431 gaagggcaccattgagaggtacaagaaggc 460
||||| || ||||| ||||||||||||||
Sbjct: 254 gaaggctacaattgacaggtacaagaaggc 283
>gb|AY332475.1| Oryza sativa (japonica cultivar-group) MADS protein (MAF1) mRNA,
complete cds
Length = 1010
Score = 206 bits (104), Expect = 2e-050
Identities = 184/210 (87%), Gaps = 3/210 (1%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 47 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 106
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 107 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 166
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaacagc---gt 430
|| |||||||||||||||||||| |||||||||||||||||| ||||||||| | ||
Sbjct: 167 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaacaacaatgt 226
Query: 431 gaagggcaccattgagaggtacaagaaggc 460
||||| || ||||| ||||||||||||||
Sbjct: 227 gaaggctacaattgacaggtacaagaaggc 256
>emb|AL513004.1|CNS07EFJ Oryza sativa (japonica cultivar-group) chromosome 12 clone
OSJNBa0021D06, *** SEQUENCING IN PROGRESS ***
Length = 139671
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 71973 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 72032
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 72033 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 72092
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 72093 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 72145
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 139684
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Minus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 67705 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 67646
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 67645 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 67586
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 67585 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 67533
>emb|BX000346.3|CNS08CDC Oryza sativa chromosome 12, . BAC OSJNBb0084C05 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 117585
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Minus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 12955 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 12896
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 12895 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 12836
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 12835 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 12783
>emb|BX649218.2|CNS09SBX Oryza sativa chromosome 12, . BAC B1280F04 of chromosome 12 of cultivar
Nipponbare of ssp. japonica of Oryza sativa (rice),
complete sequence
Length = 160556
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 137985 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 138044
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 138045 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 138104
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 138105 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 138157
>ref|NT_107159.1| Oryza sativa (japonica cultivar-group)
Length = 480567
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 261214 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 261273
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 261274 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 261333
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 261334 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 261386
>gb|AACV01024177.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024177, whole
genome shotgun sequence
Length = 23681
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Minus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 21800 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 21741
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 21740 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 21681
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 21680 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 21628
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 5314524 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 5314583
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 5314584 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 5314643
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5314644 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 5314696
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 5314524 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 5314583
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 5314584 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 5314643
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5314644 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 5314696
Score = 46.1 bits (23), Expect = 0.050
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| ||||| || |||| |||||||||| ||| ||||| ||||||||||
Sbjct: 15774497 ctcaagaaggcccacgagatcgccgtcctctgcgacgtcgacgtcgccgccatcgtcttc 15774438
Query: 390 tcc 392
|||
Sbjct: 15774437 tcc 15774435
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 5585180 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 5585239
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 5585240 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 5585299
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5585300 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 5585352
Score = 46.1 bits (23), Expect = 0.050
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| ||||| || |||| |||||||||| ||| ||||| ||||||||||
Sbjct: 19156062 ctcaagaaggcccacgagatcgccgtcctctgcgacgtcgacgtcgccgccatcgtcttc 19156003
Query: 390 tcc 392
|||
Sbjct: 19156002 tcc 19156000
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 200 bits (101), Expect = 1e-048
Identities = 155/173 (89%)
Strand = Plus / Plus
Query: 254 gggcaagactgagatcaagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaa 313
||||| || |||||||||| | |||||||||||||| | | | ||||| |||||||||||
Sbjct: 5585169 gggcaggattgagatcaagaggatcgagaacacgacaagccgccaggtgaccttctgcaa 5585228
Query: 314 gcgccgcaacggcctcctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggt 373
|||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct: 5585229 gcgccgcaacggacttctcaagaaggcgtatgagctctccgtcctctgcgatgccgaggt 5585288
Query: 374 cgcgctcatcgtcttctccagccgcggccgcctctacgagtacgccaacaaca 426
|| |||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5585289 ggctctcatcgtcttctccagccgtggccgcctctacgagtactccaacaaca 5585341
Score = 46.1 bits (23), Expect = 0.050
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
||||||||||| ||||| || |||| |||||||||| ||| ||||| ||||||||||
Sbjct: 19082289 ctcaagaaggcccacgagatcgccgtcctctgcgacgtcgacgtcgccgccatcgtcttc 19082230
Query: 390 tcc 392
|||
Sbjct: 19082229 tcc 19082227
>dbj|AK070540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057B01, full
insert sequence
Length = 963
Score = 198 bits (100), Expect = 6e-048
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 56 aagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctc 115
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 116 ctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttc 175
Query: 390 tccagccg 397
||||||||
Sbjct: 176 tccagccg 183
>gb|AY551918.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS213
mRNA, complete cds
Length = 1134
Score = 198 bits (100), Expect = 6e-048
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 162 aagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctc 221
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 222 ctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttc 281
Query: 390 tccagccg 397
||||||||
Sbjct: 282 tccagccg 289
>gb|AACV01010373.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010373, whole
genome shotgun sequence
Length = 17272
Score = 198 bits (100), Expect = 6e-048
Identities = 121/128 (94%)
Strand = Plus / Minus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 15042 aagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctc 14983
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 14982 ctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttc 14923
Query: 390 tccagccg 397
||||||||
Sbjct: 14922 tccagccg 14915
>ref|XM_473638.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 750
Score = 198 bits (100), Expect = 6e-048
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 25 aagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctc 84
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 85 ctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttc 144
Query: 390 tccagccg 397
||||||||
Sbjct: 145 tccagccg 152
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 198 bits (100), Expect = 6e-048
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 3058337 aagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctc 3058396
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 3058397 ctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttc 3058456
Query: 390 tccagccg 397
||||||||
Sbjct: 3058457 tccagccg 3058464
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 198 bits (100), Expect = 6e-048
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 7086174 aagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctc 7086233
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 7086234 ctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttc 7086293
Query: 390 tccagccg 397
||||||||
Sbjct: 7086294 tccagccg 7086301
Score = 67.9 bits (34), Expect = 1e-008
Identities = 103/126 (81%)
Strand = Plus / Plus
Query: 295 ggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccg 354
||||||| || |||| ||||| |||||||| || |||||||||| | ||||| ||
Sbjct: 891734 ggcaggtgacgttctcgaagcggcgcaacgggatcttcaagaaggccaaggagctggcca 891793
Query: 355 tgctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagt 414
| || |||||||||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct: 891794 tcctgtgcgacgccgaggtcggcctcgtcatcttctccagcaccggccgcctctacgagt 891853
Query: 415 acgcca 420
| ||||
Sbjct: 891854 atgcca 891859
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 198 bits (100), Expect = 6e-048
Identities = 121/128 (94%)
Strand = Plus / Plus
Query: 270 aagcgcatcgagaacacgaccaacaggcaggtcaccttctgcaagcgccgcaacggcctc 329
|||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 26230273 aagcgcatcgagaacaagatcaaccggcaggtcaccttctccaagcgccgcaacggcctc 26230332
Query: 330 ctcaagaaggcgtacgagctctccgtgctctgcgacgccgaggtcgcgctcatcgtcttc 389
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct: 26230333 ctcaagaaggcgtacgagctctccgtgctctgcgacgcggaggtggcgctcatcatcttc 26230392
Query: 390 tccagccg 397
||||||||
Sbjct: 26230393 tccagccg 26230400
Score = 67.9 bits (34), Expect = 1e-008
Identities = 103/126 (81%)
Strand = Plus / Plus
Query: 295 ggcaggtcaccttctgcaagcgccgcaacggcctcctcaagaaggcgtacgagctctccg 354
||||||| || |||| ||||| |||||||| || |||||||||| | ||||| ||
Sbjct: 20035833 ggcaggtgacgttctcgaagcggcgcaacgggatcttcaagaaggccaaggagctggcca 20035892
Query: 355 tgctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacgagt 414
| || |||||||||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct: 20035893 tcctgtgcgacgccgaggtcggcctcgtcatcttctccagcaccggccgcctctacgagt 20035952
Query: 415 acgcca 420
| ||||
Sbjct: 20035953 atgcca 20035958
Score = 56.0 bits (28), Expect = 5e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 357 ctctgcgacgccgaggtcgcgctcatcgtcttctccagccgcggccgcctctacga 412
|||||||||||||| |||| ||||| ||||||||| || |||||||||||||||
Sbjct: 11277364 ctctgcgacgccgacgtcggcctcattgtcttctcctgcaccggccgcctctacga 11277419
Score = 48.1 bits (24), Expect = 0.013
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 333 aagaaggcgtacgagctctccgtgctctgcgacgcc 368
||||||||| | |||||| |||||||||||||||||
Sbjct: 16039787 aagaaggcggaggagctcgccgtgctctgcgacgcc 16039822
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,087,034
Number of Sequences: 438736
Number of extensions: 2087034
Number of successful extensions: 15964
Number of sequences better than 0.5: 353
Number of HSP's better than 0.5 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12162
Number of HSP's gapped (non-prelim): 3773
length of query: 1354
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1333
effective length of database: 2,791,206,460
effective search space: 3720678211180
effective search space used: 3720678211180
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)