BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.4
(1628 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA... 329 3e-087
dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA... 307 1e-080
ref|NT_107231.1| Oryza sativa (japonica cultivar-group) 307 1e-080
dbj|AP005466.2| Oryza sativa (japonica cultivar-group) geno... 307 1e-080
dbj|AP003608.3| Oryza sativa (japonica cultivar-group) geno... 307 1e-080
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 307 1e-080
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 254 1e-064
dbj|AP003626.3| Oryza sativa (japonica cultivar-group) geno... 254 1e-064
dbj|AP003616.4| Oryza sativa (japonica cultivar-group) geno... 254 1e-064
gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) c... 254 1e-064
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 254 1e-064
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 254 1e-064
gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) c... 244 1e-061
gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering s... 165 9e-038
ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA 101 1e-018
gb|AACV01014263.1| Oryza sativa (japonica cultivar-group) c... 98 2e-017
gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Or... 86 7e-014
dbj|AP004184.3| Oryza sativa (japonica cultivar-group) geno... 82 1e-012
gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) c... 82 1e-012
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 82 1e-012
dbj|AP004191.3| Oryza sativa (japonica cultivar-group) geno... 82 1e-012
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 82 1e-012
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 82 1e-012
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 82 1e-012
dbj|AK106802.1| Oryza sativa (japonica cultivar-group) cDNA... 64 3e-007
dbj|AP004886.3| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
ref|NT_079878.2| Oryza sativa (japonica cultivar-group) 64 3e-007
dbj|AP004681.2| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
dbj|AP003512.3| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
gb|AACV01013994.1| Oryza sativa (japonica cultivar-group) c... 64 3e-007
ref|XM_463996.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-007
dbj|AP004150.2| Oryza sativa (japonica cultivar-group) geno... 64 3e-007
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 64 3e-007
gb|CH401213.1| Oryza sativa (japonica cultivar-group) chrom... 64 3e-007
dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-006
dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA... 62 1e-006
dbj|AP002819.1| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
gb|AACV01001867.1| Oryza sativa (japonica cultivar-group) c... 62 1e-006
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
ref|NM_192870.1| Oryza sativa (japonica cultivar-group), p... 62 1e-006
ref|XM_463287.1| Oryza sativa (japonica cultivar-group), p... 62 1e-006
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 62 1e-006
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 62 1e-006
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 62 1e-006
gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering s... 56 6e-005
gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) c... 56 6e-005
dbj|AP003562.3| Oryza sativa (japonica cultivar-group) geno... 56 6e-005
gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (j... 54 2e-004
gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) c... 52 0.001
ref|NM_183645.1| Oryza sativa (japonica cultivar-group), p... 52 0.001
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 52 0.001
dbj|AP003140.2| Oryza sativa (japonica cultivar-group) geno... 52 0.001
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 52 0.001
dbj|AP005929.3| Oryza sativa (japonica cultivar-group) geno... 50 0.004
gb|AACV01014109.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
gb|CH401214.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|AQ690710.1|AQ690710 nbxb0082H20f CUGI Rice BAC Library O... 48 0.015
gb|AZ046313.1|AZ046313 nbeb0091N19r CUGI Rice BAC Library (... 48 0.015
gb|C72992.1|C72992 C72992 Rice panicle at flowering stage O... 48 0.015
gb|C72981.2|C72981 C72981 Rice panicle at flowering stage O... 48 0.015
dbj|AP003867.1| Oryza sativa (japonica cultivar-group) chro... 46 0.060
gb|AC120530.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
dbj|AK069803.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.060
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 46 0.060
dbj|AP004759.3| Oryza sativa (japonica cultivar-group) geno... 46 0.060
gb|AACV01002829.1| Oryza sativa (japonica cultivar-group) c... 46 0.060
gb|AACV01018116.1| Oryza sativa (japonica cultivar-group) c... 46 0.060
gb|AACV01022704.1| Oryza sativa (japonica cultivar-group) c... 46 0.060
ref|NM_190223.1| Oryza sativa (japonica cultivar-group), p... 46 0.060
ref|XM_481636.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.060
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.060
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 46 0.060
dbj|AP003407.3| Oryza sativa (japonica cultivar-group) geno... 46 0.060
gb|CH401261.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 46 0.060
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 46 0.060
gb|AC146948.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.060
dbj|AK110223.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.24
dbj|AK119501.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.24
gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 ... 44 0.24
gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 ... 44 0.24
dbj|AP003837.2| Oryza sativa (japonica cultivar-group) geno... 44 0.24
dbj|AP003748.4| Oryza sativa (japonica cultivar-group) geno... 44 0.24
dbj|AP002869.1| Oryza sativa (japonica cultivar-group) geno... 44 0.24
gb|AACV01000929.1| Oryza sativa (japonica cultivar-group) c... 44 0.24
gb|AACV01008134.1| Oryza sativa (japonica cultivar-group) c... 44 0.24
gb|AACV01015402.1| Oryza sativa (japonica cultivar-group) c... 44 0.24
ref|NM_183847.1| Oryza sativa (japonica cultivar-group), p... 44 0.24
ref|XM_470039.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.24
ref|XM_477091.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.24
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 44 0.24
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 44 0.24
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 44 0.24
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.24
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.24
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.24
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.24
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.24
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.24
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.24
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.24
>dbj|AK072708.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142F24, full
insert sequence
Length = 1503
Score = 329 bits (166), Expect = 3e-087
Identities = 361/426 (84%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 486 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 545
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaactcgctggtgatggacttcgtgaac 544
||| ||||||| ||| |||||||| |||| |||||| |||||||| || || ||||||
Sbjct: 546 tgcgccaagaactacaactgcaagctcctccccaacacgctggtgctgaacacggtgaac 605
Query: 545 aacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaacatgtac 604
|||||| |||| |||| |||||||||| ||| |||||||||||||||||||||| |||
Sbjct: 606 gacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaacatctac 665
Query: 605 cggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagccccaac 664
|||||||||||||| ||||| | ||||||| | | || || |||||||||||||||
Sbjct: 666 cggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagccccaac 725
Query: 665 acggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtcattggc 724
|| || |||||||||||||||||||| ||| |||||||||| || |||| ||| |||
Sbjct: 726 accgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccaccatcggc 785
Query: 725 gtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcaccggcgtg 784
|||||||||||||||||||||||||||||| ||| | || ||||||||||||||
Sbjct: 786 accggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcaccggcgtc 845
Query: 785 acctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggacgagaag 844
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct: 846 acctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggacgagcgg 905
Query: 845 gacgtc 850
||||||
Sbjct: 906 gacgtc 911
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 1046 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 1105
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 1106 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 1150
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 285 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 331
>dbj|AK072748.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O11, full
insert sequence
Length = 1559
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Plus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 919 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 978
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 979 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 1038
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 1039 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 1098
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 1099 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 1158
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 1159 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 1218
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 1219 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 1278
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 1279 tcgtgcttcta 1289
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Plus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 646 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 705
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 706 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 765
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 766 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 825
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 826 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 878
Score = 123 bits (62), Expect = 3e-025
Identities = 107/122 (87%)
Strand = Plus / Plus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 451 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 510
Query: 488 accaagaagtacgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaac 547
||||||| ||||||||||||||||| |||||| | ||||| |||||||||||||||||
Sbjct: 511 gccaagaaatacgactgcaagatcctccccaacactttggtgctggacttcgtgaacaac 570
Query: 548 gg 549
||
Sbjct: 571 gg 572
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 217 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 276
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 277 ggcaagcagacgatcgtcgtccccaagggcgacttc 312
>ref|NT_107231.1| Oryza sativa (japonica cultivar-group)
Length = 1372977
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 140008 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 139949
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 139948 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 139889
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 139888 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 139829
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 139828 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 139769
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 139768 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 139709
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 139708 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 139649
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 139648 tcgtgcttcta 139638
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 110650 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 110591
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 110590 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 110531
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 110530 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 110471
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 110470 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 110411
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 110410 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 110351
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 110350 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 110291
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 110290 tcgtgcttcta 110280
Score = 236 bits (119), Expect = 3e-059
Identities = 264/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | |
Sbjct: 100423 ggcgtccggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacc 100364
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
||| |||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 100363 tacaagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 100304
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 100303 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatca-cttc 100245
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
||||| |||||||||||||||||||| || |||||||||||||| ||||| | | ||||
Sbjct: 100244 aagaatatcaccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaag 100185
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || |||||||||||||| || ||||| |||| |||||||| |||| ||||||
Sbjct: 100184 ctgccgtgcaccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaac 100125
Query: 1196 aagaccatggc 1206
|||||||||||
Sbjct: 100124 aagaccatggc 100114
Score = 176 bits (89), Expect = 2e-041
Identities = 197/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 140281 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggatggcatccacatg 140222
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 140221 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 140162
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 140161 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 140102
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 140101 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 140049
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 110923 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 110864
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 110863 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 110804
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 110803 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 110744
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 110743 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 110691
Score = 161 bits (81), Expect = 1e-036
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 579 ccaagttcttccacatgaacatgtaccggtgcaaggacatgctgatcaaggacgtgaccg 638
|||||||||||||||||||||||| | ||||||| |||| ||||||||| |||||
Sbjct: 100740 ccaagttcttccacatgaacatgttcaagtgcaagaacataaccatcaaggacttgacca 100681
Query: 639 tgacggcgcccggggacagccccaacacggatggcatccacatgggcgactcatccggga 698
| || ||||| | ||||||||| |||||||| | ||||||||| ||||||| ||| ||
Sbjct: 100680 tcaccgcgccggaggacagcccgaacacggacgacatccacatatgcgactcctccaaga 100621
Query: 699 tcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggccccggga 758
||| ||||| | |||| ||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct: 100620 tcagcatcatcgacacggtcatcggcaccggcgatgactgcatctccatcggccccggca 100561
Query: 759 cctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagcatcggca 818
|| | |||||| ||||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 100560 ccgagggcatcaacatctccggcgtcacctgcggccccggctacggcatcagcgtcggca 100501
Query: 819 gcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtcaa 867
|||| || | |||||||||||||||||||| || ||| ||| ||||||
Sbjct: 100500 gcctgggcagatacaaggacgagaaggacgtgaccgacgtcaccgtcaa 100452
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 140580 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 140521
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 140520 gccaagaaatacgactgcaagatcctccccaac 140488
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 111222 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 111163
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 111162 gccaagaaatacgactgcaagatcctccccaac 111130
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 449 gacgggcagggcccagccgtgtggagcaagaactcctgcaccaagaagtacgactgcaag 508
||||| |||||| | ||||| |||||||||||| |||| ||||||| ||| |||||||
Sbjct: 100959 gacggccagggcgccgccgtctggagcaagaacacctgtgccaagaaatacatctgcaag 100900
Query: 509 atccttcccaac 520
||||| ||||||
Sbjct: 100899 atcctccccaac 100888
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 140814 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 140755
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 140754 ggcaagcagacgatcgtcgtccccaagggcgacttc 140719
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 111456 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 111397
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 111396 ggcaagcagacgatcgtcgtccccaagggcgacttc 111361
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OJ1212_H09
Length = 129040
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 87518 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 87459
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 87458 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 87399
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 87398 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 87339
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 87338 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 87279
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 87278 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 87219
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 87218 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 87159
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 87158 tcgtgcttcta 87148
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 58160 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 58101
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 58100 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 58041
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 58040 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 57981
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 57980 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 57921
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 57920 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 57861
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 57860 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 57801
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 57800 tcgtgcttcta 57790
Score = 236 bits (119), Expect = 3e-059
Identities = 264/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | |
Sbjct: 47933 ggcgtccggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacc 47874
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
||| |||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 47873 tacaagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 47814
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 47813 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatca-cttc 47755
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
||||| |||||||||||||||||||| || |||||||||||||| ||||| | | ||||
Sbjct: 47754 aagaatatcaccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaag 47695
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || |||||||||||||| || ||||| |||| |||||||| |||| ||||||
Sbjct: 47694 ctgccgtgcaccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaac 47635
Query: 1196 aagaccatggc 1206
|||||||||||
Sbjct: 47634 aagaccatggc 47624
Score = 176 bits (89), Expect = 2e-041
Identities = 197/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 87791 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggatggcatccacatg 87732
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 87731 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 87672
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 87671 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 87612
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 87611 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 87559
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 58433 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 58374
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 58373 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 58314
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 58313 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 58254
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 58253 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 58201
Score = 161 bits (81), Expect = 1e-036
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 579 ccaagttcttccacatgaacatgtaccggtgcaaggacatgctgatcaaggacgtgaccg 638
|||||||||||||||||||||||| | ||||||| |||| ||||||||| |||||
Sbjct: 48250 ccaagttcttccacatgaacatgttcaagtgcaagaacataaccatcaaggacttgacca 48191
Query: 639 tgacggcgcccggggacagccccaacacggatggcatccacatgggcgactcatccggga 698
| || ||||| | ||||||||| |||||||| | ||||||||| ||||||| ||| ||
Sbjct: 48190 tcaccgcgccggaggacagcccgaacacggacgacatccacatatgcgactcctccaaga 48131
Query: 699 tcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggccccggga 758
||| ||||| | |||| ||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct: 48130 tcagcatcatcgacacggtcatcggcaccggcgatgactgcatctccatcggccccggca 48071
Query: 759 cctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagcatcggca 818
|| | |||||| ||||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 48070 ccgagggcatcaacatctccggcgtcacctgcggccccggctacggcatcagcgtcggca 48011
Query: 819 gcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtcaa 867
|||| || | |||||||||||||||||||| || ||| ||| ||||||
Sbjct: 48010 gcctgggcagatacaaggacgagaaggacgtgaccgacgtcaccgtcaa 47962
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 88090 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 88031
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 88030 gccaagaaatacgactgcaagatcctccccaac 87998
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 58732 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 58673
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 58672 gccaagaaatacgactgcaagatcctccccaac 58640
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 449 gacgggcagggcccagccgtgtggagcaagaactcctgcaccaagaagtacgactgcaag 508
||||| |||||| | ||||| |||||||||||| |||| ||||||| ||| |||||||
Sbjct: 48469 gacggccagggcgccgccgtctggagcaagaacacctgtgccaagaaatacatctgcaag 48410
Query: 509 atccttcccaac 520
||||| ||||||
Sbjct: 48409 atcctccccaac 48398
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 88324 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 88265
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 88264 ggcaagcagacgatcgtcgtccccaagggcgacttc 88229
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 58966 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 58907
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 58906 ggcaagcagacgatcgtcgtccccaagggcgacttc 58871
>dbj|AP003608.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0007G12
Length = 111819
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 110650 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 110591
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 110590 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 110531
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 110530 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 110471
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 110470 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 110411
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 110410 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 110351
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 110350 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 110291
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 110290 tcgtgcttcta 110280
Score = 236 bits (119), Expect = 3e-059
Identities = 264/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | |
Sbjct: 100423 ggcgtccggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacc 100364
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
||| |||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 100363 tacaagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 100304
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 100303 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatca-cttc 100245
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
||||| |||||||||||||||||||| || |||||||||||||| ||||| | | ||||
Sbjct: 100244 aagaatatcaccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaag 100185
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || |||||||||||||| || ||||| |||| |||||||| |||| ||||||
Sbjct: 100184 ctgccgtgcaccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaac 100125
Query: 1196 aagaccatggc 1206
|||||||||||
Sbjct: 100124 aagaccatggc 100114
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 110923 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 110864
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 110863 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 110804
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 110803 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 110744
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 110743 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 110691
Score = 161 bits (81), Expect = 1e-036
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 579 ccaagttcttccacatgaacatgtaccggtgcaaggacatgctgatcaaggacgtgaccg 638
|||||||||||||||||||||||| | ||||||| |||| ||||||||| |||||
Sbjct: 100740 ccaagttcttccacatgaacatgttcaagtgcaagaacataaccatcaaggacttgacca 100681
Query: 639 tgacggcgcccggggacagccccaacacggatggcatccacatgggcgactcatccggga 698
| || ||||| | ||||||||| |||||||| | ||||||||| ||||||| ||| ||
Sbjct: 100680 tcaccgcgccggaggacagcccgaacacggacgacatccacatatgcgactcctccaaga 100621
Query: 699 tcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggccccggga 758
||| ||||| | |||| ||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct: 100620 tcagcatcatcgacacggtcatcggcaccggcgatgactgcatctccatcggccccggca 100561
Query: 759 cctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagcatcggca 818
|| | |||||| ||||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 100560 ccgagggcatcaacatctccggcgtcacctgcggccccggctacggcatcagcgtcggca 100501
Query: 819 gcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtcaa 867
|||| || | |||||||||||||||||||| || ||| ||| ||||||
Sbjct: 100500 gcctgggcagatacaaggacgagaaggacgtgaccgacgtcaccgtcaa 100452
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 111222 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 111163
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 111162 gccaagaaatacgactgcaagatcctccccaac 111130
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 449 gacgggcagggcccagccgtgtggagcaagaactcctgcaccaagaagtacgactgcaag 508
||||| |||||| | ||||| |||||||||||| |||| ||||||| ||| |||||||
Sbjct: 100959 gacggccagggcgccgccgtctggagcaagaacacctgtgccaagaaatacatctgcaag 100900
Query: 509 atccttcccaac 520
||||| ||||||
Sbjct: 100899 atcctccccaac 100888
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 111456 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 111397
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 111396 ggcaagcagacgatcgtcgtccccaagggcgacttc 111361
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 20274008 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 20273949
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 20273948 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 20273889
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 20273888 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 20273829
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 20273828 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 20273769
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 20273768 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 20273709
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 20273708 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 20273649
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 20273648 tcgtgcttcta 20273638
Score = 307 bits (155), Expect = 1e-080
Identities = 317/371 (85%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 20244650 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 20244591
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 20244590 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 20244531
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 20244530 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 20244471
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||||||||||||||||||||| || |||||||||||||| |||||| | | ||||
Sbjct: 20244470 aagaacatcaccggcacctcctccacgcccgaggccgttagcctcctctgctccgacaag 20244411
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 20244410 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 20244351
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 20244350 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 20244291
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 20244290 tcgtgcttcta 20244280
Score = 254 bits (128), Expect = 1e-064
Identities = 266/312 (85%)
Strand = Plus / Plus
Query: 539 gtgaacaacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaac 598
|||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 24001509 gtgaacgacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaac 24001568
Query: 599 atgtaccggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagc 658
|| ||||||||||||||||| ||||| | ||||||| | | || || |||||||||
Sbjct: 24001569 atctaccggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagc 24001628
Query: 659 cccaacacggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtc 718
|||||||| || |||||||||||||||||||| ||| |||||||||| || |||| |
Sbjct: 24001629 cccaacaccgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccacc 24001688
Query: 719 attggcgtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcacc 778
|| ||| |||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct: 24001689 atcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcacc 24001748
Query: 779 ggcgtgacctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggac 838
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 24001749 ggcgtcacctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggac 24001808
Query: 839 gagaaggacgtc 850
||| |||||||
Sbjct: 24001809 gagcgggacgtc 24001820
Score = 236 bits (119), Expect = 3e-059
Identities = 264/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | |
Sbjct: 20234423 ggcgtccggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacc 20234364
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
||| |||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 20234363 tacaagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 20234304
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 20234303 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatca-cttc 20234245
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
||||| |||||||||||||||||||| || |||||||||||||| ||||| | | ||||
Sbjct: 20234244 aagaatatcaccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaag 20234185
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || |||||||||||||| || ||||| |||| |||||||| |||| ||||||
Sbjct: 20234184 ctgccgtgcaccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaac 20234125
Query: 1196 aagaccatggc 1206
|||||||||||
Sbjct: 20234124 aagaccatggc 20234114
Score = 176 bits (89), Expect = 2e-041
Identities = 197/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 20274281 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggatggcatccacatg 20274222
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 20274221 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 20274162
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 20274161 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 20274102
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 20274101 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 20274049
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 20244923 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 20244864
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 20244863 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 20244804
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 20244803 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 20244744
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 20244743 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 20244691
Score = 161 bits (81), Expect = 1e-036
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 579 ccaagttcttccacatgaacatgtaccggtgcaaggacatgctgatcaaggacgtgaccg 638
|||||||||||||||||||||||| | ||||||| |||| ||||||||| |||||
Sbjct: 20234740 ccaagttcttccacatgaacatgttcaagtgcaagaacataaccatcaaggacttgacca 20234681
Query: 639 tgacggcgcccggggacagccccaacacggatggcatccacatgggcgactcatccggga 698
| || ||||| | ||||||||| |||||||| | ||||||||| ||||||| ||| ||
Sbjct: 20234680 tcaccgcgccggaggacagcccgaacacggacgacatccacatatgcgactcctccaaga 20234621
Query: 699 tcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggccccggga 758
||| ||||| | |||| ||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct: 20234620 tcagcatcatcgacacggtcatcggcaccggcgatgactgcatctccatcggccccggca 20234561
Query: 759 cctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagcatcggca 818
|| | |||||| ||||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 20234560 ccgagggcatcaacatctccggcgtcacctgcggccccggctacggcatcagcgtcggca 20234501
Query: 819 gcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtcaa 867
|||| || | |||||||||||||||||||| || ||| ||| ||||||
Sbjct: 20234500 gcctgggcagatacaaggacgagaaggacgtgaccgacgtcaccgtcaa 20234452
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 20274580 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 20274521
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 20274520 gccaagaaatacgactgcaagatcctccccaac 20274488
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 20245222 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 20245163
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 20245162 gccaagaaatacgactgcaagatcctccccaac 20245130
Score = 87.7 bits (44), Expect = 2e-014
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 24000857 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 24000916
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaac 520
||| ||||||| ||| |||||||| |||| ||||||
Sbjct: 24000917 tgcgccaagaactacaactgcaagctcctccccaac 24000952
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 24001955 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 24002014
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 24002015 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 24002059
Score = 63.9 bits (32), Expect = 3e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 778 cggcgtgacctgcggccctggccacggcatcagcatcggc 817
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 16112675 cggcgtcacctgcggcccgggccacggcatcagcatcggc 16112714
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 449 gacgggcagggcccagccgtgtggagcaagaactcctgcaccaagaagtacgactgcaag 508
||||| |||||| | ||||| |||||||||||| |||| ||||||| ||| |||||||
Sbjct: 20234959 gacggccagggcgccgccgtctggagcaagaacacctgtgccaagaaatacatctgcaag 20234900
Query: 509 atccttcccaac 520
||||| ||||||
Sbjct: 20234899 atcctccccaac 20234888
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctcc 763
||||||||||||| |||||||||| |||||| |||||
Sbjct: 17969513 cggcgacgactgcgtctccatcgggcccgggtcctcc 17969549
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 20274814 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 20274755
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 20274754 ggcaagcagacgatcgtcgtccccaagggcgacttc 20274719
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 20245456 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 20245397
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 20245396 ggcaagcagacgatcgtcgtccccaagggcgacttc 20245361
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 24000656 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 24000702
Score = 44.1 bits (22), Expect = 0.24
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgg 756
||||||||||||| ||||| ||||||||||
Sbjct: 23997437 cggcgacgactgcgtctccgtcggccccgg 23997466
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 254 bits (128), Expect = 1e-064
Identities = 266/312 (85%)
Strand = Plus / Plus
Query: 539 gtgaacaacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaac 598
|||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 1466994 gtgaacgacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaac 1467053
Query: 599 atgtaccggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagc 658
|| ||||||||||||||||| ||||| | ||||||| | | || || |||||||||
Sbjct: 1467054 atctaccggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagc 1467113
Query: 659 cccaacacggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtc 718
|||||||| || |||||||||||||||||||| ||| |||||||||| || |||| |
Sbjct: 1467114 cccaacaccgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccacc 1467173
Query: 719 attggcgtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcacc 778
|| ||| |||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct: 1467174 atcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcacc 1467233
Query: 779 ggcgtgacctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggac 838
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1467234 ggcgtcacctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggac 1467293
Query: 839 gagaaggacgtc 850
||| |||||||
Sbjct: 1467294 gagcgggacgtc 1467305
Score = 87.7 bits (44), Expect = 2e-014
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 1466342 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 1466401
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaac 520
||| ||||||| ||| |||||||| |||| ||||||
Sbjct: 1466402 tgcgccaagaactacaactgcaagctcctccccaac 1466437
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 1467440 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 1467499
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 1467500 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 1467544
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 1466141 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 1466187
Score = 44.1 bits (22), Expect = 0.24
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgg 756
||||||||||||| ||||| ||||||||||
Sbjct: 1462922 cggcgacgactgcgtctccgtcggccccgg 1462951
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0429G06
Length = 158321
Score = 254 bits (128), Expect = 1e-064
Identities = 266/312 (85%)
Strand = Plus / Plus
Query: 539 gtgaacaacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaac 598
|||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 11202 gtgaacgacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaac 11261
Query: 599 atgtaccggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagc 658
|| ||||||||||||||||| ||||| | ||||||| | | || || |||||||||
Sbjct: 11262 atctaccggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagc 11321
Query: 659 cccaacacggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtc 718
|||||||| || |||||||||||||||||||| ||| |||||||||| || |||| |
Sbjct: 11322 cccaacaccgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccacc 11381
Query: 719 attggcgtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcacc 778
|| ||| |||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct: 11382 atcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcacc 11441
Query: 779 ggcgtgacctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggac 838
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 11442 ggcgtcacctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggac 11501
Query: 839 gagaaggacgtc 850
||| |||||||
Sbjct: 11502 gagcgggacgtc 11513
Score = 87.7 bits (44), Expect = 2e-014
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 10550 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 10609
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaac 520
||| ||||||| ||| |||||||| |||| ||||||
Sbjct: 10610 tgcgccaagaactacaactgcaagctcctccccaac 10645
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 11648 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 11707
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 11708 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 11752
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 10349 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 10395
Score = 44.1 bits (22), Expect = 0.24
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgg 756
||||||||||||| ||||| ||||||||||
Sbjct: 7130 cggcgacgactgcgtctccgtcggccccgg 7159
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0490F09
Length = 149542
Score = 254 bits (128), Expect = 1e-064
Identities = 266/312 (85%)
Strand = Plus / Plus
Query: 539 gtgaacaacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaac 598
|||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 131120 gtgaacgacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaac 131179
Query: 599 atgtaccggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagc 658
|| ||||||||||||||||| ||||| | ||||||| | | || || |||||||||
Sbjct: 131180 atctaccggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagc 131239
Query: 659 cccaacacggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtc 718
|||||||| || |||||||||||||||||||| ||| |||||||||| || |||| |
Sbjct: 131240 cccaacaccgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccacc 131299
Query: 719 attggcgtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcacc 778
|| ||| |||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct: 131300 atcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcacc 131359
Query: 779 ggcgtgacctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggac 838
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 131360 ggcgtcacctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggac 131419
Query: 839 gagaaggacgtc 850
||| |||||||
Sbjct: 131420 gagcgggacgtc 131431
Score = 87.7 bits (44), Expect = 2e-014
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 130468 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 130527
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaac 520
||| ||||||| ||| |||||||| |||| ||||||
Sbjct: 130528 tgcgccaagaactacaactgcaagctcctccccaac 130563
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 131566 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 131625
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 131626 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 131670
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 130267 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 130313
Score = 44.1 bits (22), Expect = 0.24
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgg 756
||||||||||||| ||||| ||||||||||
Sbjct: 127048 cggcgacgactgcgtctccgtcggccccgg 127077
>gb|AACV01014531.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014531, whole
genome shotgun sequence
Length = 41492
Score = 254 bits (128), Expect = 1e-064
Identities = 266/312 (85%)
Strand = Plus / Plus
Query: 539 gtgaacaacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaac 598
|||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 31875 gtgaacgacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaac 31934
Query: 599 atgtaccggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagc 658
|| ||||||||||||||||| ||||| | ||||||| | | || || |||||||||
Sbjct: 31935 atctaccggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagc 31994
Query: 659 cccaacacggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtc 718
|||||||| || |||||||||||||||||||| ||| |||||||||| || |||| |
Sbjct: 31995 cccaacaccgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccacc 32054
Query: 719 attggcgtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcacc 778
|| ||| |||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct: 32055 atcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcacc 32114
Query: 779 ggcgtgacctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggac 838
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 32115 ggcgtcacctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggac 32174
Query: 839 gagaaggacgtc 850
||| |||||||
Sbjct: 32175 gagcgggacgtc 32186
Score = 87.7 bits (44), Expect = 2e-014
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 31223 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 31282
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaac 520
||| ||||||| ||| |||||||| |||| ||||||
Sbjct: 31283 tgcgccaagaactacaactgcaagctcctccccaac 31318
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 32321 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 32380
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 32381 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 32425
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 31022 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 31068
Score = 44.1 bits (22), Expect = 0.24
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgg 756
||||||||||||| ||||| ||||||||||
Sbjct: 27803 cggcgacgactgcgtctccgtcggccccgg 27832
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 254 bits (128), Expect = 1e-064
Identities = 266/312 (85%)
Strand = Plus / Plus
Query: 539 gtgaacaacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaac 598
|||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 5322807 gtgaacgacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaac 5322866
Query: 599 atgtaccggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagc 658
|| ||||||||||||||||| ||||| | ||||||| | | || || |||||||||
Sbjct: 5322867 atctaccggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagc 5322926
Query: 659 cccaacacggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtc 718
|||||||| || |||||||||||||||||||| ||| |||||||||| || |||| |
Sbjct: 5322927 cccaacaccgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccacc 5322986
Query: 719 attggcgtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcacc 778
|| ||| |||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct: 5322987 atcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcacc 5323046
Query: 779 ggcgtgacctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggac 838
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 5323047 ggcgtcacctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggac 5323106
Query: 839 gagaaggacgtc 850
||| |||||||
Sbjct: 5323107 gagcgggacgtc 5323118
Score = 244 bits (123), Expect = 1e-061
Identities = 309/371 (83%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 1644066 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 1644007
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 1644006 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 1643947
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 1643946 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 1643887
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||| ||||| || || |||| || |||| |||||||| | |||| | | ||||
Sbjct: 1643886 aagaacattaccggaacttcttccaagcccgagggcgttagccctccctgctccgacaag 1643827
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 1643826 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 1643767
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 1643766 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 1643707
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 1643706 tcgtgcttcta 1643696
Score = 236 bits (119), Expect = 3e-059
Identities = 264/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | |
Sbjct: 1633829 ggcgtccggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacc 1633770
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
||| |||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 1633769 tacaagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 1633710
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 1633709 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatca-cttc 1633651
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
||||| |||||||||||||||||||| || |||||||||||||| ||||| | | ||||
Sbjct: 1633650 aagaatatcaccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaag 1633591
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || |||||||||||||| || ||||| |||| |||||||| |||| ||||||
Sbjct: 1633590 ctgccgtgcaccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaac 1633531
Query: 1196 aagaccatggc 1206
|||||||||||
Sbjct: 1633530 aagaccatggc 1633520
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 1644339 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 1644280
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 1644279 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 1644220
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 1644219 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 1644160
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 1644159 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 1644107
Score = 161 bits (81), Expect = 1e-036
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 579 ccaagttcttccacatgaacatgtaccggtgcaaggacatgctgatcaaggacgtgaccg 638
|||||||||||||||||||||||| | ||||||| |||| ||||||||| |||||
Sbjct: 1634146 ccaagttcttccacatgaacatgttcaagtgcaagaacataaccatcaaggacttgacca 1634087
Query: 639 tgacggcgcccggggacagccccaacacggatggcatccacatgggcgactcatccggga 698
| || ||||| | ||||||||| |||||||| | ||||||||| ||||||| ||| ||
Sbjct: 1634086 tcaccgcgccggaggacagcccgaacacggacgacatccacatatgcgactcctccaaga 1634027
Query: 699 tcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggccccggga 758
||| ||||| | |||| ||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct: 1634026 tcagcatcatcgacacggtcatcggcaccggcgatgactgcatctccatcggccccggca 1633967
Query: 759 cctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagcatcggca 818
|| | |||||| ||||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 1633966 ccgagggcatcaacatctccggcgtcacctgcggccccggctacggcatcagcgtcggca 1633907
Query: 819 gcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtcaa 867
|||| || | |||||||||||||||||||| || ||| ||| ||||||
Sbjct: 1633906 gcctgggcagatacaaggacgagaaggacgtgaccgacgtcaccgtcaa 1633858
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 1706460 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 1706401
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 1706400 gccaagaaatacgactgcaagatcctccccaac 1706368
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 1644638 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 1644579
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 1644578 gccaagaaatacgactgcaagatcctccccaac 1644546
Score = 87.7 bits (44), Expect = 2e-014
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 5322155 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 5322214
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaac 520
||| ||||||| ||| |||||||| |||| ||||||
Sbjct: 5322215 tgcgccaagaactacaactgcaagctcctccccaac 5322250
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 5323253 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 5323312
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 5323313 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 5323357
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 449 gacgggcagggcccagccgtgtggagcaagaactcctgcaccaagaagtacgactgcaag 508
||||| |||||| | ||||| |||||||||||| |||| ||||||| ||| |||||||
Sbjct: 1634365 gacggccagggcgccgccgtctggagcaagaacacctgtgccaagaaatacatctgcaag 1634306
Query: 509 atccttcccaac 520
||||| ||||||
Sbjct: 1634305 atcctccccaac 1634294
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 1706694 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 1706635
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 1706634 ggcaagcagacgatcgtcgtccccaagggcgacttc 1706599
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 5321954 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 5322000
Score = 44.1 bits (22), Expect = 0.24
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgg 756
||||||||||||| ||||| ||||||||||
Sbjct: 5318735 cggcgacgactgcgtctccgtcggccccgg 5318764
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 254 bits (128), Expect = 1e-064
Identities = 266/312 (85%)
Strand = Plus / Plus
Query: 539 gtgaacaacggggaggtgtccggggtcacgctgctcaactccaagttcttccacatgaac 598
|||||| |||||| |||| |||| |||||||||| ||| ||||||||||||||||||||
Sbjct: 23021544 gtgaacgacggggtggtgagcgggatcacgctgctgaacgccaagttcttccacatgaac 23021603
Query: 599 atgtaccggtgcaaggacatgctgatcaaggacgtgaccgtgacggcgcccggggacagc 658
|| ||||||||||||||||| ||||| | ||||||| | | || || |||||||||
Sbjct: 23021604 atctaccggtgcaaggacataaagatcagcggcgtgaccatcaacgccccgggggacagc 23021663
Query: 659 cccaacacggatggcatccacatgggcgactcatccgggatcaccatcaccaacaccgtc 718
|||||||| || |||||||||||||||||||| ||| |||||||||| || |||| |
Sbjct: 23021664 cccaacaccgacggcatccacatgggcgactcctccaagatcaccatcgccgccaccacc 23021723
Query: 719 attggcgtcggcgacgactgcatctccatcggccccgggacctccaaggtgaacatcacc 778
|| ||| |||||||||||||||||||||||||||||| ||| | || |||||||||
Sbjct: 23021724 atcggcaccggcgacgactgcatctccatcggccccggcaccgacggcgtcaacatcacc 23021783
Query: 779 ggcgtgacctgcggccctggccacggcatcagcatcggcagcctagggcggtacaaggac 838
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 23021784 ggcgtcacctgcggccccggccacggcatcagcatcggcagcctcggccggtacaaggac 23021843
Query: 839 gagaaggacgtc 850
||| |||||||
Sbjct: 23021844 gagcgggacgtc 23021855
Score = 244 bits (123), Expect = 1e-061
Identities = 309/371 (83%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 19342803 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 19342744
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 19342743 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 19342684
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 19342683 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 19342624
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||| ||||| || || |||| || |||| |||||||| | |||| | | ||||
Sbjct: 19342623 aagaacattaccggaacttcttccaagcccgagggcgttagccctccctgctccgacaag 19342564
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 19342563 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 19342504
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 19342503 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 19342444
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 19342443 tcgtgcttcta 19342433
Score = 236 bits (119), Expect = 3e-059
Identities = 264/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | |
Sbjct: 19332566 ggcgtccggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacc 19332507
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
||| |||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 19332506 tacaagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 19332447
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 19332446 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatca-cttc 19332388
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
||||| |||||||||||||||||||| || |||||||||||||| ||||| | | ||||
Sbjct: 19332387 aagaatatcaccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaag 19332328
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || |||||||||||||| || ||||| |||| |||||||| |||| ||||||
Sbjct: 19332327 ctgccgtgcaccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaac 19332268
Query: 1196 aagaccatggc 1206
|||||||||||
Sbjct: 19332267 aagaccatggc 19332257
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 19343076 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 19343017
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 19343016 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 19342957
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 19342956 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 19342897
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 19342896 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 19342844
Score = 161 bits (81), Expect = 1e-036
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 579 ccaagttcttccacatgaacatgtaccggtgcaaggacatgctgatcaaggacgtgaccg 638
|||||||||||||||||||||||| | ||||||| |||| ||||||||| |||||
Sbjct: 19332883 ccaagttcttccacatgaacatgttcaagtgcaagaacataaccatcaaggacttgacca 19332824
Query: 639 tgacggcgcccggggacagccccaacacggatggcatccacatgggcgactcatccggga 698
| || ||||| | ||||||||| |||||||| | ||||||||| ||||||| ||| ||
Sbjct: 19332823 tcaccgcgccggaggacagcccgaacacggacgacatccacatatgcgactcctccaaga 19332764
Query: 699 tcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggccccggga 758
||| ||||| | |||| ||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct: 19332763 tcagcatcatcgacacggtcatcggcaccggcgatgactgcatctccatcggccccggca 19332704
Query: 759 cctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagcatcggca 818
|| | |||||| ||||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 19332703 ccgagggcatcaacatctccggcgtcacctgcggccccggctacggcatcagcgtcggca 19332644
Query: 819 gcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtcaa 867
|||| || | |||||||||||||||||||| || ||| ||| ||||||
Sbjct: 19332643 gcctgggcagatacaaggacgagaaggacgtgaccgacgtcaccgtcaa 19332595
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 19405197 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 19405138
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 19405137 gccaagaaatacgactgcaagatcctccccaac 19405105
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 19343375 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 19343316
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 19343315 gccaagaaatacgactgcaagatcctccccaac 19343283
Score = 87.7 bits (44), Expect = 2e-014
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 425 gtcatcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcc 484
|||||| |||||||||| || || ||||| |||||||| | ||| |||||||||||||||
Sbjct: 23020892 gtcatctccggcaagggcaagctcgacggccagggccccggcgtctggagcaagaactcc 23020951
Query: 485 tgcaccaagaagtacgactgcaagatccttcccaac 520
||| ||||||| ||| |||||||| |||| ||||||
Sbjct: 23020952 tgcgccaagaactacaactgcaagctcctccccaac 23020987
Score = 73.8 bits (37), Expect = 3e-010
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 985 caaccccatcttcatcgacatgaagtactgccccaacaagttgtgtactgccaacggcgc 1044
|||||||||| |||||||| ||||||||||||||||| | || || ||| ||||
Sbjct: 23021990 caaccccatcatcatcgaccagaagtactgccccaacagcatctgcaccagcaagggcga 23022049
Query: 1045 ctccaaggtcaccgtcaaggacgtcaccttcaagaacatcaccgg 1089
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 23022050 ctccaaggtgtccgtcagggacgtcaccttcaggaacatcaccgg 23022094
Score = 63.9 bits (32), Expect = 3e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 778 cggcgtgacctgcggccctggccacggcatcagcatcggc 817
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 15624092 cggcgtcacctgcggcccgggccacggcatcagcatcggc 15624131
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 449 gacgggcagggcccagccgtgtggagcaagaactcctgcaccaagaagtacgactgcaag 508
||||| |||||| | ||||| |||||||||||| |||| ||||||| ||| |||||||
Sbjct: 19333102 gacggccagggcgccgccgtctggagcaagaacacctgtgccaagaaatacatctgcaag 19333043
Query: 509 atccttcccaac 520
||||| ||||||
Sbjct: 19333042 atcctccccaac 19333031
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctcc 763
||||||||||||| |||||||||| |||||| |||||
Sbjct: 17502672 cggcgacgactgcgtctccatcgggcccgggtcctcc 17502708
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 19405431 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 19405372
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 19405371 ggcaagcagacgatcgtcgtccccaagggcgacttc 19405336
Score = 46.1 bits (23), Expect = 0.060
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 230 tcggcgtgcggcggcactgggaagcagacaatcctcatacccaaggg 276
|||||||||| |||| | ||||||||||| ||||| || ||||||||
Sbjct: 23020691 tcggcgtgcgccggcgccgggaagcagacgatcctgatccccaaggg 23020737
Score = 44.1 bits (22), Expect = 0.24
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgg 756
||||||||||||| ||||| ||||||||||
Sbjct: 23017472 cggcgacgactgcgtctccgtcggccccgg 23017501
>gb|AACV01014256.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014256, whole
genome shotgun sequence
Length = 44535
Score = 244 bits (123), Expect = 1e-061
Identities = 309/371 (83%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | || |||||||||||||| |||||||||| ||||||| | |
Sbjct: 25851 ggcgtccggatcaagtcctatgaggacgccgcctcggtgctcaccgcctccaagtttacc 25792
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
|||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 25791 tacgagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 25732
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct: 25731 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatcaccttc 25672
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
|||||||| ||||| || || |||| || |||| |||||||| | |||| | | ||||
Sbjct: 25671 aagaacattaccggaacttcttccaagcccgagggcgttagccctccctgctccgacaag 25612
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || ||||||||||||||| || ||||| |||| |||||||| ||||| ||||||
Sbjct: 25611 ctgccgtgcaccggcgtcaccttgaatgacatcaaggtcgagtactctggcacaaacaac 25552
Query: 1196 aagaccatggctatatgcacgaacgccaagggcagcaccaagggttgcctcaaggagctt 1255
||||||||||| | |||| ||| |||||||||| ||| || |||||||||||||||
Sbjct: 25551 aagaccatggccgtctgcaagaatgccaagggcactgccaccggctgcctcaaggagctt 25492
Query: 1256 gcatgcttcta 1266
| ||||||||
Sbjct: 25491 tcgtgcttcta 25481
Score = 236 bits (119), Expect = 3e-059
Identities = 264/311 (84%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 896 ggcgtccgcatcaaggcgtacgaggacgccgcctccgtgctcaccgtctccaagatccac 955
|||||||| |||||| | ||||||||||||||||| ||||||||| ||||||| | |
Sbjct: 15614 ggcgtccggatcaagtcctacgaggacgccgcctcggtgctcaccacctccaagtttacc 15555
Query: 956 tacgagaatatcaagatggaggactcagccaaccccatcttcatcgacatgaagtactgc 1015
||| |||| ||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 15554 tacaagaacatcaagatggaggacgttgctaaccccatcatcatcgacatgaagtactgc 15495
Query: 1016 cccaacaagttgtgtactgccaacggcgcctccaaggtcaccgtcaaggacgtcaccttc 1075
||||||||| | || |||||||||||| ||||||||||||| |||||||| ||| ||||
Sbjct: 15494 cccaacaagatctgcactgccaacggcaactccaaggtcaccatcaaggacatca-cttc 15436
Query: 1076 aagaacatcaccggcacctcctccaccccggaggccgttagcctgctctgcactgccaag 1135
||||| |||||||||||||||||||| || |||||||||||||| ||||| | | ||||
Sbjct: 15435 aagaatatcaccggcacctcctccacgcccgaggccgttagcctcttctgctcagacaag 15376
Query: 1136 gtcccatgcaccggcgtcaccatggatgacgtcaacgtcgagtatagcggcaccaacaac 1195
| || |||||||||||||| || ||||| |||| |||||||| |||| ||||||
Sbjct: 15375 ctgccgtgcaccggcgtcactttgaatgacatcaatgtcgagtacgctggcaaaaacaac 15316
Query: 1196 aagaccatggc 1206
|||||||||||
Sbjct: 15315 aagaccatggc 15305
Score = 168 bits (85), Expect = 6e-039
Identities = 196/233 (84%)
Strand = Plus / Minus
Query: 623 atcaaggacgtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatg 682
||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 26124 atcaaggacgtgaccatcaccgcgccgggggacagcccgaacacggacggcatccacatg 26065
Query: 683 ggcgactcatccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatc 742
|||||||| ||| ||||| ||||| |||| ||||| ||| |||||| || ||||||
Sbjct: 26064 ggcgactcctccaagatcagcatcattgacacggtcatcggcaccggcgatgattgcatc 26005
Query: 743 tccatcggccccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccac 802
|||||||||||||| ||| || |||||| ||||||| |||||||| |||||||||
Sbjct: 26004 tccatcggccccggcaccgagggcgtcaacatctccggcgtcacctgcggtcctggccac 25945
Query: 803 ggcatcagcatcggcagcctagggcggtacaaggacgagaaggacgtcacgga 855
||||||||| |||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 25944 ggcatcagcgtcggtagcctgggcaggtacaaggacgagaaggatgtgacgga 25892
Score = 161 bits (81), Expect = 1e-036
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 579 ccaagttcttccacatgaacatgtaccggtgcaaggacatgctgatcaaggacgtgaccg 638
|||||||||||||||||||||||| | ||||||| |||| ||||||||| |||||
Sbjct: 15931 ccaagttcttccacatgaacatgttcaagtgcaagaacataaccatcaaggacttgacca 15872
Query: 639 tgacggcgcccggggacagccccaacacggatggcatccacatgggcgactcatccggga 698
| || ||||| | ||||||||| |||||||| | ||||||||| ||||||| ||| ||
Sbjct: 15871 tcaccgcgccggaggacagcccgaacacggacgacatccacatatgcgactcctccaaga 15812
Query: 699 tcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggccccggga 758
||| ||||| | |||| ||||| ||| |||||| ||||||||||||||||||||||| |
Sbjct: 15811 tcagcatcatcgacacggtcatcggcaccggcgatgactgcatctccatcggccccggca 15752
Query: 759 cctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagcatcggca 818
|| | |||||| ||||||| ||||||||||| ||| ||||||||||| ||||||
Sbjct: 15751 ccgagggcatcaacatctccggcgtcacctgcggccccggctacggcatcagcgtcggca 15692
Query: 819 gcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtcaa 867
|||| || | |||||||||||||||||||| || ||| ||| ||||||
Sbjct: 15691 gcctgggcagatacaaggacgagaaggacgtgaccgacgtcaccgtcaa 15643
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 26423 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 26364
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 26363 gccaagaaatacgactgcaagatcctccccaac 26331
Score = 56.0 bits (28), Expect = 6e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 449 gacgggcagggcccagccgtgtggagcaagaactcctgcaccaagaagtacgactgcaag 508
||||| |||||| | ||||| |||||||||||| |||| ||||||| ||| |||||||
Sbjct: 16150 gacggccagggcgccgccgtctggagcaagaacacctgtgccaagaaatacatctgcaag 16091
Query: 509 atccttcccaac 520
||||| ||||||
Sbjct: 16090 atcctccccaac 16079
>gb|AU094117.1|AU094117 AU094117 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2591, mRNA sequence
Length = 478
Score = 165 bits (83), Expect = 9e-038
Identities = 182/215 (84%)
Strand = Plus / Plus
Query: 1052 gtcaccgtcaaggacgtcaccttcaagaacatcaccggcacctcctccaccccggaggcc 1111
|||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1 gtcaccatcaaggacatcaccttcaagaacatcaccggcacctcctccacgcccgaggcc 60
Query: 1112 gttagcctgctctgcactgccaaggtcccatgcaccggcgtcaccatggatgacgtcaac 1171
|||||||| |||||| | | |||| | || ||||||||||||||| || ||||| ||||
Sbjct: 61 gttagcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacatcaag 120
Query: 1172 gtcgagtatagcggcaccaacaacaagaccatggctatatgcacgaacgccaagggcagc 1231
|||||||| ||||| ||||||||||||||||| | |||| ||| ||||||||||
Sbjct: 121 gtcgagtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaagggcact 180
Query: 1232 accaagggttgcctcaaggagcttgcatgcttcta 1266
||| || ||||||||||||||| | ||||||||
Sbjct: 181 gccaccggctgcctcaaggagctttcgtgcttcta 215
>ref|XM_464471.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1269
Score = 101 bits (51), Expect = 1e-018
Identities = 189/235 (80%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 634 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 693
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 694 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 753
Query: 752 cccgggacctccaaggtgaacatcaccggcgtgacctgcggccctggccacggcatcagc 811
||||| ||| | ||| | ||| |||||| ||| ||||| || ||||||||| |
Sbjct: 754 cccggcaccaagatggtccgcgtcaacggcgtccgctgtggccccggtcacggcatctcc 813
Query: 812 atcggcagcctagggcggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct: 814 gtcggcagcctcggccggtacaaggacgagaaggacgtggaggacatcatcgtca 868
>gb|AACV01014263.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014263,
whole genome shotgun sequence
Length = 4633
Score = 97.6 bits (49), Expect = 2e-017
Identities = 82/93 (88%)
Strand = Plus / Minus
Query: 428 atcaccggcaagggaaaccttgacgggcagggcccagccgtgtggagcaagaactcctgc 487
|||| ||||||||| || || ||||| |||||| | ||||| ||||||||||||||||||
Sbjct: 201 atcagcggcaagggcaagctcgacggccagggcgccgccgtctggagcaagaactcctgc 142
Query: 488 accaagaagtacgactgcaagatccttcccaac 520
||||||| ||||||||||||||||| ||||||
Sbjct: 141 gccaagaaatacgactgcaagatcctccccaac 109
Score = 48.1 bits (24), Expect = 0.015
Identities = 78/96 (81%)
Strand = Plus / Minus
Query: 188 ggcaagacagacagcacgaaggctgtgcaggaggcatgggcatcggcgtgcggcggcact 247
|||||||| |||||||| ||||| || | ||||| ||| | ||||||||| |||||
Sbjct: 435 ggcaagacggacagcaccaaggcggtcaacgaggcgtggacggcggcgtgcgctggcacc 376
Query: 248 gggaagcagacaatcctcatacccaagggcgacttc 283
|| |||||||| ||| || | |||||||||||||||
Sbjct: 375 ggcaagcagacgatcgtcgtccccaagggcgacttc 340
>gb|AU312180.1|AU312180 AU312180 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA1658, mRNA sequence
Length = 356
Score = 85.7 bits (43), Expect = 7e-014
Identities = 130/159 (81%)
Strand = Plus / Plus
Query: 1108 ggccgttagcctgctctgcactgccaaggtcccatgcaccggcgtcaccatggatgacgt 1167
|||||||||||| |||||| | | |||| | || ||||||||||||||| || ||||| |
Sbjct: 2 ggccgttagcctcctctgctccgacaagctgccgtgcaccggcgtcaccttgaatgacat 61
Query: 1168 caacgtcgagtatagcggcaccaacaacaagaccatggctatatgcacgaacgccaaggg 1227
||| |||||||| ||||| ||||||||||||||||| | |||| ||| ||||||||
Sbjct: 62 caaggtcgagtactctggcacaaacaacaagaccatggccgtctgcaagaatgccaaggg 121
Query: 1228 cagcaccaagggttgcctcaaggagcttgcatgcttcta 1266
|| ||| || ||||||||||||||| | ||||||||
Sbjct: 122 cactgccaccggctgcctcaaggagctttcgtgcttcta 160
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1225_F07
Length = 142772
Score = 81.8 bits (41), Expect = 1e-012
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 138890 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 138949
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 138950 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 139009
Query: 752 cccgg 756
|||||
Sbjct: 139010 cccgg 139014
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 828 ggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||||||||||||||| |||||||| |||||
Sbjct: 139585 ggtacaaggacgagaaggacgtggaggacatcatcgtca 139623
>gb|AACV01003552.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003552,
whole genome shotgun sequence
Length = 23711
Score = 81.8 bits (41), Expect = 1e-012
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 257 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 316
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 317 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 376
Query: 752 cccgg 756
|||||
Sbjct: 377 cccgg 381
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 828 ggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||||||||||||||| |||||||| |||||
Sbjct: 952 ggtacaaggacgagaaggacgtggaggacatcatcgtca 990
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 81.8 bits (41), Expect = 1e-012
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 784659 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 784718
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 784719 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 784778
Query: 752 cccgg 756
|||||
Sbjct: 784779 cccgg 784783
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 828 ggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||||||||||||||| |||||||| |||||
Sbjct: 785354 ggtacaaggacgagaaggacgtggaggacatcatcgtca 785392
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1524_D08
Length = 143046
Score = 81.8 bits (41), Expect = 1e-012
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 66168 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 66227
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 66228 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 66287
Query: 752 cccgg 756
|||||
Sbjct: 66288 cccgg 66292
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 828 ggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||||||||||||||| |||||||| |||||
Sbjct: 66863 ggtacaaggacgagaaggacgtggaggacatcatcgtca 66901
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 81.8 bits (41), Expect = 1e-012
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 5515828 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 5515887
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 5515888 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 5515947
Query: 752 cccgg 756
|||||
Sbjct: 5515948 cccgg 5515952
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 828 ggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||||||||||||||| |||||||| |||||
Sbjct: 5516523 ggtacaaggacgagaaggacgtggaggacatcatcgtca 5516561
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 81.8 bits (41), Expect = 1e-012
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 5515828 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 5515887
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 5515888 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 5515947
Query: 752 cccgg 756
|||||
Sbjct: 5515948 cccgg 5515952
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 828 ggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||||||||||||||| |||||||| |||||
Sbjct: 5516523 ggtacaaggacgagaaggacgtggaggacatcatcgtca 5516561
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 81.8 bits (41), Expect = 1e-012
Identities = 104/125 (83%)
Strand = Plus / Plus
Query: 632 gtgaccgtgacggcgcccggggacagccccaacacggatggcatccacatgggcgactca 691
|||||| | ||| |||| ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct: 5412587 gtgaccatcacgtcgccgggggacagcccaaacacggacggcatccacgtcggcgactcc 5412646
Query: 692 tccgggatcaccatcaccaacaccgtcattggcgtcggcgacgactgcatctccatcggc 751
|| |||||||||| | |||| ||| | || |||||||||||||||||||||||||
Sbjct: 5412647 accaacatcaccatcagctccaccaccatcgccgccggcgacgactgcatctccatcggc 5412706
Query: 752 cccgg 756
|||||
Sbjct: 5412707 cccgg 5412711
Score = 63.9 bits (32), Expect = 3e-007
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||||||||||||||||||
Sbjct: 1570959 ctgcggccccggccacggcatcagcatcggcagcct 1570924
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 828 ggtacaaggacgagaaggacgtcacggacatcaacgtca 866
|||||||||||||||||||||| |||||||| |||||
Sbjct: 5413282 ggtacaaggacgagaaggacgtggaggacatcatcgtca 5413320
Score = 44.1 bits (22), Expect = 0.24
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatc 748
||||||||||||||||||||||
Sbjct: 1571019 cggcgacgactgcatctccatc 1570998
>dbj|AK106802.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B12, full
insert sequence
Length = 1932
Score = 63.9 bits (32), Expect = 3e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||||||||||||||||||
Sbjct: 1125 ctgcggccccggccacggcatcagcatcggcagcct 1160
Score = 44.1 bits (22), Expect = 0.24
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatc 748
||||||||||||||||||||||
Sbjct: 1065 cggcgacgactgcatctccatc 1086
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0576F08
Length = 135314
Score = 63.9 bits (32), Expect = 3e-007
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||||||||||||||||||
Sbjct: 134380 ctgcggccccggccacggcatcagcatcggcagcct 134345
Score = 44.1 bits (22), Expect = 0.24
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatc 748
||||||||||||||||||||||
Sbjct: 134440 cggcgacgactgcatctccatc 134419
>ref|NT_079878.2| Oryza sativa (japonica cultivar-group)
Length = 2996370
Score = 63.9 bits (32), Expect = 3e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 778 cggcgtgacctgcggccctggccacggcatcagcatcggc 817
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 845197 cggcgtcacctgcggcccgggccacggcatcagcatcggc 845236
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctcc 763
||||||||||||| |||||||||| |||||| |||||
Sbjct: 2702035 cggcgacgactgcgtctccatcgggcccgggtcctcc 2702071
>dbj|AP004681.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0040M10
Length = 162790
Score = 63.9 bits (32), Expect = 3e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 778 cggcgtgacctgcggccctggccacggcatcagcatcggc 817
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 17468 cggcgtcacctgcggcccgggccacggcatcagcatcggc 17507
>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0618D11
Length = 150103
Score = 63.9 bits (32), Expect = 3e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 778 cggcgtgacctgcggccctggccacggcatcagcatcggc 817
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 141404 cggcgtcacctgcggcccgggccacggcatcagcatcggc 141443
>gb|AACV01013994.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013994, whole
genome shotgun sequence
Length = 25239
Score = 63.9 bits (32), Expect = 3e-007
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 778 cggcgtgacctgcggccctggccacggcatcagcatcggc 817
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 12438 cggcgtcacctgcggcccgggccacggcatcagcatcggc 12399
>ref|XM_463996.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1932
Score = 63.9 bits (32), Expect = 3e-007
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||||||||||||||||||
Sbjct: 1125 ctgcggccccggccacggcatcagcatcggcagcct 1160
Score = 44.1 bits (22), Expect = 0.24
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatc 748
||||||||||||||||||||||
Sbjct: 1065 cggcgacgactgcatctccatc 1086
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1007_D04
Length = 125503
Score = 63.9 bits (32), Expect = 3e-007
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||||||||||||||||||
Sbjct: 8062 ctgcggccccggccacggcatcagcatcggcagcct 8027
Score = 44.1 bits (22), Expect = 0.24
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatc 748
||||||||||||||||||||||
Sbjct: 8122 cggcgacgactgcatctccatc 8101
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 63.9 bits (32), Expect = 3e-007
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||||||||||||||||||
Sbjct: 1570959 ctgcggccccggccacggcatcagcatcggcagcct 1570924
Score = 44.1 bits (22), Expect = 0.24
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatc 748
||||||||||||||||||||||
Sbjct: 1571019 cggcgacgactgcatctccatc 1570998
>gb|CH401213.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000050 genomic
scaffold, whole genome shotgun sequence
Length = 1883777
Score = 63.9 bits (32), Expect = 3e-007
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 778 cggcgtgacctgcggccctggccacggcatcagcatcggc 817
|||||| ||||||||||| |||||||||||||||||||||
Sbjct: 1003453 cggcgtcacctgcggcccgggccacggcatcagcatcggc 1003492
>dbj|AK069989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037D20, full
insert sequence
Length = 1459
Score = 61.9 bits (31), Expect = 1e-006
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 498 acgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacggggaggtgt 557
|||| ||||||||| | |||||| || ||||| |||||| |||||| |||||| ||||
Sbjct: 501 acgaatgcaagatcttgcccaacacgttggtgctggactacgtgaagaacgggaccgtgt 560
Query: 558 ccggggtcacgctgctcaactccaagttcttccacatgaacatgtac 604
| ||| ||| |||| | ||| |||||||||||||||| ||| |||||
Sbjct: 561 cggggctcaagctggtgaacgccaagttcttccacatcaacgtgtac 607
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 1085 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 1132
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 1197 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 1245
>dbj|AK103106.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118O22, full
insert sequence
Length = 1594
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 713 cggcgacgactgcatctccgtcggccccggcacctccaa 751
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 629 ggcgcccgggagcagccccaacacggacggcatccac 665
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 773 ctgcggccccggccacggcataagcatcgggagcct 808
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0501G01
Length = 154561
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 120218 cggcgacgactgcatctccgtcggccccggcacctccaa 120180
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 120302 ggcgcccgggagcagccccaacacggacggcatccac 120266
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 120158 ctgcggccccggccacggcataagcatcgggagcct 120123
>gb|AACV01001867.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001867, whole
genome shotgun sequence
Length = 63761
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 10567 cggcgacgactgcatctccgtcggccccggcacctccaa 10529
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 10651 ggcgcccgggagcagccccaacacggacggcatccac 10615
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 10507 ctgcggccccggccacggcataagcatcgggagcct 10472
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 24975815 cggcgacgactgcatctccgtcggccccggcacctccaa 24975777
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 18428036 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 18427989
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 785 acctgcggccctggccacggcatcagcatcggcagcct 822
|||||||| || || |||||||||||||||||||||||
Sbjct: 10827088 acctgcgggcccgggcacggcatcagcatcggcagcct 10827125
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 24975899 ggcgcccgggagcagccccaacacggacggcatccac 24975863
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 18427924 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 18427876
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 24975755 ctgcggccccggccacggcataagcatcgggagcct 24975720
Score = 48.1 bits (24), Expect = 0.015
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 525 tggtgatggacttcgtgaacaacggggaggtgtccggggtcacgctgctcaactccaagt 584
||||| |||||| |||||| |||||| ||||| ||| ||| |||| | ||| ||||||
Sbjct: 18428593 tggtgctggactacgtgaagaacgggaccgtgtcggggctcaagctggtgaacgccaagt 18428534
Query: 585 tcttccacatgaacatgtac 604
|||||||||| ||| |||||
Sbjct: 18428533 tcttccacatcaacgtgtac 18428514
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||| ||||| |||||||||| | ||||||
Sbjct: 38823707 cggcgacgactgcgtctccgtcggccccggcaactccaa 38823745
Score = 44.1 bits (22), Expect = 0.24
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 797 ggccacggcatcagcatcggcagcct 822
||||||||||||||||||||| ||||
Sbjct: 12684496 ggccacggcatcagcatcggcggcct 12684521
>ref|NM_192870.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1203
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 657 cggcgacgactgcatctccgtcggccccggcacctccaa 695
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 573 ggcgcccgggagcagccccaacacggacggcatccac 609
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 717 ctgcggccccggccacggcataagcatcgggagcct 752
>ref|XM_463287.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1212
Score = 61.9 bits (31), Expect = 1e-006
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 498 acgactgcaagatccttcccaactcgctggtgatggacttcgtgaacaacggggaggtgt 557
|||| ||||||||| | |||||| || ||||| |||||| |||||| |||||| ||||
Sbjct: 440 acgaatgcaagatcttgcccaacacgttggtgctggactacgtgaagaacgggaccgtgt 499
Query: 558 ccggggtcacgctgctcaactccaagttcttccacatgaacatgtac 604
| ||| ||| |||| | ||| |||||||||||||||| ||| |||||
Sbjct: 500 cggggctcaagctggtgaacgccaagttcttccacatcaacgtgtac 546
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 1024 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 1071
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 1136 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 1184
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 7894047 cggcgacgactgcatctccgtcggccccggcacctccaa 7894009
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 1346268 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 1346221
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 7894131 ggcgcccgggagcagccccaacacggacggcatccac 7894095
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 1346156 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 1346108
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 7893987 ctgcggccccggccacggcataagcatcgggagcct 7893952
Score = 48.1 bits (24), Expect = 0.015
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 525 tggtgatggacttcgtgaacaacggggaggtgtccggggtcacgctgctcaactccaagt 584
||||| |||||| |||||| |||||| ||||| ||| ||| |||| | ||| ||||||
Sbjct: 1346825 tggtgctggactacgtgaagaacgggaccgtgtcggggctcaagctggtgaacgccaagt 1346766
Query: 585 tcttccacatgaacatgtac 604
|||||||||| ||| |||||
Sbjct: 1346765 tcttccacatcaacgtgtac 1346746
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 7888797 cggcgacgactgcatctccgtcggccccggcacctccaa 7888759
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 1383256 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 1383209
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 7888881 ggcgcccgggagcagccccaacacggacggcatccac 7888845
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 1383144 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 1383096
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 7888737 ctgcggccccggccacggcataagcatcgggagcct 7888702
Score = 48.1 bits (24), Expect = 0.015
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 525 tggtgatggacttcgtgaacaacggggaggtgtccggggtcacgctgctcaactccaagt 584
||||| |||||| |||||| |||||| ||||| ||| ||| |||| | ||| ||||||
Sbjct: 1383813 tggtgctggactacgtgaagaacgggaccgtgtcggggctcaagctggtgaacgccaagt 1383754
Query: 585 tcttccacatgaacatgtac 604
|||||||||| ||| |||||
Sbjct: 1383753 tcttccacatcaacgtgtac 1383734
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 24513920 cggcgacgactgcatctccgtcggccccggcacctccaa 24513882
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 18008379 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 18008332
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 785 acctgcggccctggccacggcatcagcatcggcagcct 822
|||||||| || || |||||||||||||||||||||||
Sbjct: 11043293 acctgcgggcccgggcacggcatcagcatcggcagcct 11043330
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 24514004 ggcgcccgggagcagccccaacacggacggcatccac 24513968
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 18008267 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 18008219
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 24513860 ctgcggccccggccacggcataagcatcgggagcct 24513825
Score = 48.1 bits (24), Expect = 0.015
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 525 tggtgatggacttcgtgaacaacggggaggtgtccggggtcacgctgctcaactccaagt 584
||||| |||||| |||||| |||||| ||||| ||| ||| |||| | ||| ||||||
Sbjct: 18008936 tggtgctggactacgtgaagaacgggaccgtgtcggggctcaagctggtgaacgccaagt 18008877
Query: 585 tcttccacatgaacatgtac 604
|||||||||| ||| |||||
Sbjct: 18008876 tcttccacatcaacgtgtac 18008857
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||| ||||| |||||||||| | ||||||
Sbjct: 38203658 cggcgacgactgcgtctccgtcggccccggcaactccaa 38203696
Score = 44.1 bits (22), Expect = 0.24
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 797 ggccacggcatcagcatcggcagcct 822
||||||||||||||||||||| ||||
Sbjct: 12642489 ggccacggcatcagcatcggcggcct 12642514
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 61.9 bits (31), Expect = 1e-006
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||||||||| |||||||||| ||||||||
Sbjct: 24897098 cggcgacgactgcatctccgtcggccccggcacctccaa 24897060
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 18349319 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 18349272
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 785 acctgcggccctggccacggcatcagcatcggcagcct 822
|||||||| || || |||||||||||||||||||||||
Sbjct: 10829306 acctgcgggcccgggcacggcatcagcatcggcagcct 10829343
Score = 50.1 bits (25), Expect = 0.004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 643 ggcgcccggggacagccccaacacggatggcatccac 679
|||||||||| ||||||||||||||| |||||||||
Sbjct: 24897182 ggcgcccgggagcagccccaacacggacggcatccac 24897146
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 18349207 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 18349159
Score = 48.1 bits (24), Expect = 0.015
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 787 ctgcggccctggccacggcatcagcatcggcagcct 822
||||||||| ||||||||||| |||||||| |||||
Sbjct: 24897038 ctgcggccccggccacggcataagcatcgggagcct 24897003
Score = 48.1 bits (24), Expect = 0.015
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 525 tggtgatggacttcgtgaacaacggggaggtgtccggggtcacgctgctcaactccaagt 584
||||| |||||| |||||| |||||| ||||| ||| ||| |||| | ||| ||||||
Sbjct: 18349876 tggtgctggactacgtgaagaacgggaccgtgtcggggctcaagctggtgaacgccaagt 18349817
Query: 585 tcttccacatgaacatgtac 604
|||||||||| ||| |||||
Sbjct: 18349816 tcttccacatcaacgtgtac 18349797
Score = 46.1 bits (23), Expect = 0.060
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 727 cggcgacgactgcatctccatcggccccgggacctccaa 765
||||||||||||| ||||| |||||||||| | ||||||
Sbjct: 38743037 cggcgacgactgcgtctccgtcggccccggcaactccaa 38743075
Score = 44.1 bits (22), Expect = 0.24
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 797 ggccacggcatcagcatcggcagcct 822
||||||||||||||||||||| ||||
Sbjct: 12686714 ggccacggcatcagcatcggcggcct 12686739
>gb|AU094002.1|AU094002 AU094002 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1822, mRNA sequence
Length = 675
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 269 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 316
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 381 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 429
>gb|AACV01001330.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001330, whole
genome shotgun sequence
Length = 59730
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 25041 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 24994
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 24929 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 24881
Score = 48.1 bits (24), Expect = 0.015
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 525 tggtgatggacttcgtgaacaacggggaggtgtccggggtcacgctgctcaactccaagt 584
||||| |||||| |||||| |||||| ||||| ||| ||| |||| | ||| ||||||
Sbjct: 25598 tggtgctggactacgtgaagaacgggaccgtgtcggggctcaagctggtgaacgccaagt 25539
Query: 585 tcttccacatgaacatgtac 604
|||||||||| ||| |||||
Sbjct: 25538 tcttccacatcaacgtgtac 25519
>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1108H10
Length = 136357
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 1079 aacatcaccggcacctcctccaccccggaggccgttagcctgctctgc 1126
|||||||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 106653 aacatcaccggcacctccaacacgccggaggccgtcagcctactctgc 106606
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1191 acaacaagaccatggctatatgcacgaacgccaagggcagcaccaaggg 1239
|||||||||||||||| | ||||| ||||||||||||| | |||||||
Sbjct: 106541 acaacaagaccatggccgtctgcaccaacgccaagggcatctccaaggg 106493
Score = 48.1 bits (24), Expect = 0.015
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 525 tggtgatggacttcgtgaacaacggggaggtgtccggggtcacgctgctcaactccaagt 584
||||| |||||| |||||| |||||| ||||| ||| ||| |||| | ||| ||||||
Sbjct: 107210 tggtgctggactacgtgaagaacgggaccgtgtcggggctcaagctggtgaacgccaagt 107151
Query: 585 tcttccacatgaacatgtac 604
|||||||||| ||| |||||
Sbjct: 107150 tcttccacatcaacgtgtac 107131
>gb|CB652533.1|CB652533 OSJNEc02J24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02J24 3', mRNA sequence
Length = 801
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 788 tgcggccctggccacggcatcagcatcggcagcct 822
|||||||| |||||||||||||||||||| |||||
Sbjct: 730 tgcggccccggccacggcatcagcatcgggagcct 696
>gb|AACV01000807.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000807, whole
genome shotgun sequence
Length = 15948
Score = 52.0 bits (26), Expect = 0.001
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 785 acctgcggccctggccacggcatcagcatcggcagcct 822
|||||||| || || |||||||||||||||||||||||
Sbjct: 13926 acctgcgggcccgggcacggcatcagcatcggcagcct 13889
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,279,345
Number of Sequences: 438736
Number of extensions: 2279345
Number of successful extensions: 16280
Number of sequences better than 0.5: 107
Number of HSP's better than 0.5 without gapping: 120
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14239
Number of HSP's gapped (non-prelim): 1977
length of query: 1628
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1606
effective length of database: 2,790,767,724
effective search space: 4481972964744
effective search space used: 4481972964744
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)