BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.2
(562 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA... 123 1e-025
dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA... 123 1e-025
gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (jap... 105 3e-020
gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (jap... 100 2e-018
gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) c... 80 1e-012
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 80 1e-012
gb|AC133008.3| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 80 1e-012
gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (ja... 74 9e-011
dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA... 74 9e-011
ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA 74 9e-011
ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-... 74 9e-011
dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA... 66 2e-008
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
>dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H12, full
insert sequence
Length = 1173
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 301 aacaaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcact 360
|||| |||||||||||||||||| || ||||| ||||| ||||| || ||||| |||||
Sbjct: 852 aacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcaca 793
Query: 361 cggtgatggtagtcatggaagtccgagccaccgtacagtggaaggaaatttgatgggctc 420
|||||||| |||||||| ||||| ||||| || |||||||| | ||||||||||||||||
Sbjct: 792 cggtgatgatagtcatgaaagtcggagcctccatacagtggcaagaaatttgatgggctc 733
Query: 421 catggaaagtgatagccgctgtgagc 446
||||| || || || || ||||||||
Sbjct: 732 catgggaaatggtatccactgtgagc 707
>dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J20, full
insert sequence
Length = 1223
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 301 aacaaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcact 360
|||| |||||||||||||||||| || ||||| ||||| ||||| || ||||| |||||
Sbjct: 808 aacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcaca 749
Query: 361 cggtgatggtagtcatggaagtccgagccaccgtacagtggaaggaaatttgatgggctc 420
|||||||| |||||||| ||||| ||||| || |||||||| | ||||||||||||||||
Sbjct: 748 cggtgatgatagtcatgaaagtcggagcctccatacagtggcaagaaatttgatgggctc 689
Query: 421 catggaaagtgatagccgctgtgagc 446
||||| || || || || ||||||||
Sbjct: 688 catgggaaatggtatccactgtgagc 663
>gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1956, mRNA sequence
Length = 449
Score = 105 bits (53), Expect = 3e-020
Identities = 101/117 (86%)
Strand = Plus / Minus
Query: 301 aacaaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcact 360
|||| |||||||||||||||||| || ||||| ||||| ||||| || ||||| |||||
Sbjct: 117 aacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcaca 58
Query: 361 cggtgatggtagtcatggaagtccgagccaccgtacagtggaaggaaatttgatggg 417
|||||||| |||||||| ||||| ||||| || |||||||| | |||||||||||||
Sbjct: 57 cggtgatgatagtcatgaaagtcggagcctccatacagtggcaagaaatttgatggg 1
>gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3165, mRNA sequence
Length = 449
Score = 99.6 bits (50), Expect = 2e-018
Identities = 100/117 (85%)
Strand = Plus / Minus
Query: 301 aacaaccagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcact 360
|||| |||||||||||||||||| || ||||| ||||| ||||| || ||||| |||||
Sbjct: 117 aacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcaca 58
Query: 361 cggtgatggtagtcatggaagtccgagccaccgtacagtggaaggaaatttgatggg 417
|||||||| |||||||| ||||| ||||| || ||||| || | |||||||||||||
Sbjct: 57 cggtgatgatagtcatgaaagtcggagcctccatacagnggcaagaaatttgatggg 1
>gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023822, whole
genome shotgun sequence
Length = 11245
Score = 79.8 bits (40), Expect = 1e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 305 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 364
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 8102 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 8161
Query: 365 gatggtagtcatggaagtccgagc 388
|||| |||||||| ||||| ||||
Sbjct: 8162 gatgatagtcatgaaagtcggagc 8185
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 394 tacagtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagc 446
|||||||| | ||||||||||||||||||||| || || || || ||||||||
Sbjct: 8277 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagc 8329
>gb|CH401271.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000108
genomic scaffold, whole genome shotgun sequence
Length = 327658
Score = 79.8 bits (40), Expect = 1e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 305 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 364
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 295298 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 295357
Query: 365 gatggtagtcatggaagtccgagc 388
|||| |||||||| ||||| ||||
Sbjct: 295358 gatgatagtcatgaaagtcggagc 295381
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 394 tacagtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagc 446
|||||||| | ||||||||||||||||||||| || || || || ||||||||
Sbjct: 295473 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagc 295525
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 79.8 bits (40), Expect = 1e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 305 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 364
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 22561189 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 22561248
Query: 365 gatggtagtcatggaagtccgagc 388
|||| |||||||| ||||| ||||
Sbjct: 22561249 gatgatagtcatgaaagtcggagc 22561272
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 394 tacagtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagc 446
|||||||| | ||||||||||||||||||||| || || || || ||||||||
Sbjct: 22561364 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagc 22561416
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 79.8 bits (40), Expect = 1e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 305 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 364
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 28323575 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 28323634
Query: 365 gatggtagtcatggaagtccgagc 388
|||| |||||||| ||||| ||||
Sbjct: 28323635 gatgatagtcatgaaagtcggagc 28323658
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 394 tacagtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagc 446
|||||||| | ||||||||||||||||||||| || || || || ||||||||
Sbjct: 28323750 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagc 28323802
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0026K20 map S10559, complete sequence
Length = 115996
Score = 79.8 bits (40), Expect = 1e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 305 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 364
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 50313 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 50372
Query: 365 gatggtagtcatggaagtccgagc 388
|||| |||||||| ||||| ||||
Sbjct: 50373 gatgatagtcatgaaagtcggagc 50396
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 394 tacagtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagc 446
|||||||| | ||||||||||||||||||||| || || || || ||||||||
Sbjct: 50488 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagc 50540
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 79.8 bits (40), Expect = 1e-012
Identities = 73/84 (86%)
Strand = Plus / Plus
Query: 305 accagtccatgtaaacaaatgtcgaggcatagttccctgactttgtgtacagcactcggt 364
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 28306024 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 28306083
Query: 365 gatggtagtcatggaagtccgagc 388
|||| |||||||| ||||| ||||
Sbjct: 28306084 gatgatagtcatgaaagtcggagc 28306107
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 394 tacagtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagc 446
|||||||| | ||||||||||||||||||||| || || || || ||||||||
Sbjct: 28306199 tacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagc 28306251
>gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61906_1A, mRNA sequence
Length = 390
Score = 73.8 bits (37), Expect = 9e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 337 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 396
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 123 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 64
Query: 397 agtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
| ||| | |||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 63 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctc 11
>dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F03, full
insert sequence
Length = 1146
Score = 73.8 bits (37), Expect = 9e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 337 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 396
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 766 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 707
Query: 397 agtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
| ||| | |||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 706 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctc 654
>ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1146
Score = 73.8 bits (37), Expect = 9e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 337 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 396
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 766 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 707
Query: 397 agtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
| ||| | |||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 706 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctc 654
>ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.22 mRNA
Length = 1337
Score = 73.8 bits (37), Expect = 9e-011
Identities = 94/113 (83%)
Strand = Plus / Minus
Query: 337 ttccctgactttgtgtacagcactcggtgatggtagtcatggaagtccgagccaccgtac 396
||||| ||||| ||||| || || |||||||| ||||||||||| || | ||| || |||
Sbjct: 765 ttcccagacttggtgtagagaacacggtgatgatagtcatggaattcagcgccgccatac 706
Query: 397 agtggaaggaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
| ||| | |||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 705 aatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcctc 653
>dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L07, full
insert sequence
Length = 1337
Score = 65.9 bits (33), Expect = 2e-008
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 361 cggtgatggtagtcatggaagtccgagccaccgtacagtggaaggaaatttgatgggctc 420
|||||||| ||||||||||| || | ||| || |||| ||| | |||||| || ||||||
Sbjct: 741 cggtgatgatagtcatggaattcagcgccgccatacaatggcaagaaattggacgggctc 682
Query: 421 catggaaagtgatagccgctgtgagcctc 449
||||| ||||| ||||| |||||||||||
Sbjct: 681 catgggaagtggtagccactgtgagcctc 653
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 405 gaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
|||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 88119 gaaattggacgggctccatgggaagtggtagccactgtgagcctc 88075
>gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg014992, whole
genome shotgun sequence
Length = 12136
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 405 gaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
|||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 10475 gaaattggacgggctccatgggaagtggtagccactgtgagcctc 10431
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 405 gaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
|||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 88117 gaaattggacgggctccatgggaagtggtagccactgtgagcctc 88073
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 405 gaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
|||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 80174 gaaattggacgggctccatgggaagtggtagccactgtgagcctc 80130
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome
shotgun sequence
Length = 28626509
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 405 gaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
|||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 80174 gaaattggacgggctccatgggaagtggtagccactgtgagcctc 80130
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
complete sequence
Length = 29644043
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 405 gaaatttgatgggctccatggaaagtgatagccgctgtgagcctc 449
|||||| || ||||||||||| ||||| ||||| |||||||||||
Sbjct: 88820 gaaattggacgggctccatgggaagtggtagccactgtgagcctc 88776
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 434,933
Number of Sequences: 438736
Number of extensions: 434933
Number of successful extensions: 9575
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9432
Number of HSP's gapped (non-prelim): 143
length of query: 562
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 541
effective length of database: 2,791,206,460
effective search space: 1510042694860
effective search space used: 1510042694860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)