BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA... 331 3e-088
dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA... 331 3e-088
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 331 3e-088
ref|XM_474061.1| Oryza sativa (japonica cultivar-group), p... 331 3e-088
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 331 3e-088
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 331 3e-088
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 331 3e-088
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 331 3e-088
emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromoso... 331 3e-088
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 331 3e-088
>dbj|AK071973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088J07, full
insert sequence
Length = 1746
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Minus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1416 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 1357
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1356 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 1297
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 1296 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 1237
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 1236 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 1177
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 1176 ggcgttccgcacgcggagg 1158
>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
insert sequence
Length = 2821
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Minus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 2396
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2395 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 2336
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 2335 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 2276
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 2275 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 2216
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 2215 ggcgttccgcacgcggagg 2197
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Plus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 16303 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 16362
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 16363 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 16422
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 16423 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 16482
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 16483 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 16542
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 16543 ggcgttccgcacgcggagg 16561
>ref|XM_474061.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2298
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Minus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2286 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 2227
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2226 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 2167
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 2166 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 2107
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 2106 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 2047
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 2046 ggcgttccgcacgcggagg 2028
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Plus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18411 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 18470
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18471 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 18530
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 18531 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 18590
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 18591 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 18650
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 18651 ggcgttccgcacgcggagg 18669
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Plus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 10307174 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 10307233
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10307234 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 10307293
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 10307294 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 10307353
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 10307354 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 10307413
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 10307414 ggcgttccgcacgcggagg 10307432
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Plus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 29451273 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 29451332
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 29451333 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 29451392
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 29451393 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 29451452
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 29451453 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 29451512
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 29451513 ggcgttccgcacgcggagg 29451531
>emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0079B02,
complete sequence
Length = 126659
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Plus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18411 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 18470
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 18471 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 18530
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 18531 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 18590
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 18591 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 18650
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 18651 ggcgttccgcacgcggagg 18669
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
complete sequence
Length = 153643
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Plus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 142124 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 142183
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 142184 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 142243
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 142244 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 142303
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 142304 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 142363
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 142364 ggcgttccgcacgcggagg 142382
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 331 bits (167), Expect = 3e-088
Identities = 236/259 (91%)
Strand = Plus / Plus
Query: 418 gttgagcgtgtgcttgaggtccccgacgtgcagcgtgtggctgcccagcgccaccttcct 477
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 32623390 gttgagcgtgtgcttgaggtcgccgacgtgcagcgtgtggctgcccagcgccaccttccg 32623449
Query: 478 gttgcccagctcgtccacgacgctgaggtccttgcacacgtccaccttgaacgccaccac 537
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 32623450 gttgccgagctcgtcgacgacgctcaggtccttgcacacgtccaccttgaacgccaccac 32623509
Query: 538 gcccgcctgcccgggctccagcgacaccttttcgaagcccagcaggggcttcgccggcgc 597
||| ||||| |||||||||||||||||||| ||||| || |||||| |||||||||||||
Sbjct: 32623510 gccggcctggccgggctccagcgacaccttctcgaacccgagcaggtgcttcgccggcgc 32623569
Query: 598 gttgggcaccgccggcggcgacgagaacaggaacaccgtgggcccgccggaccttctgcc 657
| || |||||| ||||||||||||||| |||||||| ||| ||||||||| | | | |||
Sbjct: 32623570 gctgtgcaccgacggcggcgacgagaagaggaacacggtgtgcccgccggccatcccgcc 32623629
Query: 658 cgcgttccgcacccggagg 676
||||||||||| ||||||
Sbjct: 32623630 ggcgttccgcacgcggagg 32623648
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,090,299
Number of Sequences: 438736
Number of extensions: 1090299
Number of successful extensions: 6742
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6693
Number of HSP's gapped (non-prelim): 49
length of query: 715
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 694
effective length of database: 2,791,206,460
effective search space: 1937097283240
effective search space used: 1937097283240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)