BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594130.2.1
(2756 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_466059.1| Oryza sativa (japonica cultivar-group), mRNA 1247 0.0
gb|D48464.1|D48464 RICS14669A Rice green shoot Oryza sativa... 535 e-149
gb|AU311881.1|AU311881 AU311881 Oryza sativa anther cDNA Or... 291 1e-075
gb|AU096669.1|AU096669 AU096669 Rice green shoot Oryza sati... 266 6e-068
dbj|AK108535.1| Oryza sativa (japonica cultivar-group) cDNA... 228 1e-056
gb|AACV01009691.1| Oryza sativa (japonica cultivar-group) c... 226 5e-056
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 226 5e-056
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 226 5e-056
gb|AU030097.1|AU030097 AU030097 Rice cDNA from immature lea... 188 1e-044
gb|AU030096.1|AU030096 AU030096 Rice cDNA from immature lea... 168 1e-038
emb|AL731641.4| Oryza sativa (japonica cultivar-group) chro... 163 6e-037
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 163 6e-037
dbj|AP004879.3| Oryza sativa (japonica cultivar-group) geno... 155 2e-034
gb|AACV01004553.1| Oryza sativa (japonica cultivar-group) c... 155 2e-034
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 155 2e-034
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 155 2e-034
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 155 2e-034
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 155 2e-034
gb|AQ690523.1|AQ690523 nbxb0082O11f CUGI Rice BAC Library O... 139 9e-030
gb|AQ856076.1|AQ856076 nbeb0001A02r CUGI Rice BAC Library (... 129 9e-027
dbj|AP004777.3| Oryza sativa (japonica cultivar-group) geno... 103 5e-019
gb|AACV01004554.1| Oryza sativa (japonica cultivar-group) c... 103 5e-019
dbj|AP004790.3| Oryza sativa (japonica cultivar-group) geno... 103 5e-019
gb|AQ864199.1|AQ864199 nbeb0022L19r CUGI Rice BAC Library (... 88 3e-014
gb|CV733708.1|CV733708 FLO--08-L22.g1 Rice flower lambda ph... 86 1e-013
gb|AQ576669.1|AQ576669 nbxb0089J01r CUGI Rice BAC Library O... 84 5e-013
gb|C99341.1|C99341 C99341 Rice panicle at ripening stage Or... 68 3e-008
gb|CB668586.1|CB668586 OSJNEd16I04.f OSJNEd Oryza sativa (j... 68 3e-008
gb|CB668587.1|CB668587 OSJNEd16I04.r OSJNEd Oryza sativa (j... 68 3e-008
gb|CF328664.1|CF328664 NACL--03-K20.g1 Rice callus plasmid ... 68 3e-008
gb|CF328834.1|CF328834 NACL--03-O21.b1 Rice callus plasmid ... 68 3e-008
gb|CF330102.1|CF330102 NACL--05-K23.b1 Rice callus plasmid ... 68 3e-008
gb|CF331462.1|CF331462 NACL--07-J14.g1 Rice callus plasmid ... 68 3e-008
gb|AF136268.1|AF136268 Oryza sativa subsp. japonica starch-... 68 3e-008
dbj|D11082.1|RICBE1 Oryza sativa (japonica cultivar-group) ... 68 3e-008
dbj|D10752.1|RICBE Oryza sativa (japonica cultivar-group) m... 68 3e-008
gb|AY302112.1| Oryza sativa (japonica cultivar-group) starc... 68 3e-008
dbj|AK065121.1| Oryza sativa (japonica cultivar-group) cDNA... 68 3e-008
dbj|AK068920.1| Oryza sativa (japonica cultivar-group) cDNA... 68 3e-008
dbj|AK119436.1| Oryza sativa (japonica cultivar-group) cDNA... 68 3e-008
gb|AQ271974.1|AQ271974 nbxb0027E13r CUGI Rice BAC Library O... 62 2e-006
gb|CF196291.1|CF196291 Azvi2.1_B03 AZ-VI Oryza sativa (japo... 60 7e-006
gb|CF196311.1|CF196311 Azvi2.1_D03 AZ-VI Oryza sativa (japo... 60 7e-006
gb|CF196373.1|CF196373 Azvi2.2_B11 AZ-VI Oryza sativa (japo... 60 7e-006
gb|CF196390.1|CF196390 Azvi2.2_D07 AZ-VI Oryza sativa (japo... 60 7e-006
gb|CF196400.1|CF196400 Azvi2.2_E07 AZ-VI Oryza sativa (japo... 60 7e-006
gb|CF196410.1|CF196410 Azvi2.2_F07 AZ-VI Oryza sativa (japo... 60 7e-006
gb|CF196422.1|CF196422 Azvi2.2_G10 AZ-VI Oryza sativa (japo... 60 7e-006
gb|CF326784.1|CF326784 NACL--01-A02.g1 Rice callus plasmid ... 60 7e-006
gb|CF329597.1|CF329597 NACL--04-P17.b1 Rice callus plasmid ... 60 7e-006
dbj|AG210010.1| Oryza sativa (japonica cultivar-group) DNA,... 58 3e-005
>ref|XM_466059.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2478
Score = 1247 bits (629), Expect = 0.0
Identities = 1477/1762 (83%)
Strand = Plus / Plus
Query: 507 cattttcacgcggttacgaaaagcttggatttactcgcagcgctgaaggtatcacttaca 566
||||||| |||||||| || ||| ||||||||| || ||| ||||||||| |||||||
Sbjct: 551 cattttctcgcggttatgagaagtttggatttaatcacagtgctgaaggtgtcacttatc 610
Query: 567 gagaatgggctcctggagcatactctgcagcattagtaggtgacttcaacaactggaacc 626
||||||||||||| || ||| | ||||||||||||||||||||||||||||| ||||| |
Sbjct: 611 gagaatgggctcccggggcacattctgcagcattagtaggtgacttcaacaattggaatc 670
Query: 627 caaatgctgatgctatggccagaaatgagtacggcgtttgggagattttcctgcctaaca 686
||||||| || ||| || |||||||| || |||||||||||||| ||||||||||
Sbjct: 671 caaatgcagaccgcatgagcaaaaatgagtttggtgtttgggagatttttctgcctaaca 730
Query: 687 atgctgatggttcccctgctattcctcatggctcacgtgtaaagatacggatggacacac 746
|||||||||| || || ||||||| |||||||||||||||||| | || ||||| || |
Sbjct: 731 atgctgatggctcatctcctattccacatggctcacgtgtaaaggtgcgaatggaaactc 790
Query: 747 catctggtgttaaggattccattcctgcctggatcaagttttctgtgcaggctccaggtg 806
|||||||| | |||||||| ||||||||||||||||||| ||||||||||| |||| |
Sbjct: 791 catctggtataaaggattctattcctgcctggatcaagtactctgtgcaggccgcaggag 850
Query: 807 aaataccatacaacggtatatattatgacccacctgaagaggagaaatatgtattcaaac 866
|||| |||||||| || ||||||||||| || |||||||||||||| || ||||||| |
Sbjct: 851 aaatcccatacaatggaatatattatgatcctcctgaagaggagaagtacatattcaagc 910
Query: 867 accctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttggaatgagta 926
| ||||||||||| | || |||||| |||||||||| ||| | ||||||||||||||||
Sbjct: 911 atcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttggaatgagta 970
Query: 927 gcccggaaccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaatta 986
|| |||| |||||||| || || ||||| ||||| || |||||||||||||||||||| |
Sbjct: 971 gcacggagccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaatca 1030
Query: 987 aaaagcttggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaa 1046
|||||||||||||||||||||| || ||||||||||| || || || | ||||||| ||
Sbjct: 1031 aaaagcttggatacaatgcagtgcaaataatggcaattcaagagcatgcatattatggaa 1090
Query: 1047 gctttgggtaccatgttacgaannnnnnngccccaagtagccgttttgggactccagagg 1106
|||||||||||||||| || || || |||||||| ||||| ||||| ||||| |
Sbjct: 1091 gctttgggtaccatgtcaccaatttctttgcaccaagtagtcgtttcgggaccccagaag 1150
Query: 1107 acctaaaatctcttattgataaagcgcatgagcttggcttgctagtgcttatggatattg 1166
| |||| || | ||||||||||| ||||||||||| || | ||||| |||||| |||
Sbjct: 1151 atttaaagtcattgattgataaagctcatgagcttggtttagttgtgctcatggatgttg 1210
Query: 1167 ttcatagtcattcatcaaataataccttggatggtttgaatggtttcgatggcaccgata 1226
|||| || ||| | |||||||||||| | ||||| ||||| ||||| ||||| || ||||
Sbjct: 1211 ttcacagccatgcgtcaaataataccctagatgggttgaacggttttgatggtacagata 1270
Query: 1227 cacattacttccatggtggtccacgaggccatcattggatgtgggattctcgcctattca 1286
| |||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 1271 cgcattactttcatagtggttcacgcggccatcattggatgtgggattctcgccttttca 1330
Query: 1287 attatgggagttgggaagttttgagatttctattgtcaaatgcgagatggtggcttgaag 1346
| ||||||| |||||||||| | ||||||||| | || ||||| ||||||||||| || |
Sbjct: 1331 actatgggaattgggaagttctaagatttctactatccaatgcaagatggtggctcgagg 1390
Query: 1347 aatataaatttgatgggtttcgatttgatggggtgacctccatgatgtatactcaccatg 1406
| ||||| |||||||| || ||||||| || || ||||| |||||||| ||||| ||||
Sbjct: 1391 agtataagtttgatggtttcagatttgacggtgtaacctcaatgatgtacactcatcatg 1450
Query: 1407 gattacaagtgacattcactgggaactatggcgagtattttggatttgccactgatgttg 1466
|||||||||| |||| || |||||||| | || || ||||||||||||||||||| ||
Sbjct: 1451 gattacaagtagcatttacggggaactacagtgaatactttggatttgccactgatgctg 1510
Query: 1467 atgcagtagtttacctaatgctggtaaacgatcttattcgtgggctttatccagaagctg 1526
|||||||||||||| | ||||||||||| ||| | |||| ||| |||||||| || ||
Sbjct: 1511 atgcagtagtttacttgatgctggtaaatgatttaattcatggactttatcctgaggcca 1570
Query: 1527 tatccattggcgaagatgtcagcggaatgcctacattttgtatccctgtccaagatggtg 1586
|| |||| || ||||||||||| ||||||||||||||| | ||||| ||||||||||
Sbjct: 1571 taaccatcggtgaagatgtcagtggaatgcctacatttgcccttcctgttcaagatggtg 1630
Query: 1587 gtgttggttttgattatcgtcttcatatggctgtcccagacaaatggattgaacttctga 1646
| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| || |
Sbjct: 1631 gggttggttttgattatcgccttcatatggctgttcctgacaaatggattgaactcctca 1690
Query: 1647 agcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggt 1706
|||||||||| |||| |||| | |||||||| || |||||||| | || || |||||||
Sbjct: 1691 agcaaagtgatgaatcttggaagatgggtgatattgtgcacacactgactaacagaaggt 1750
Query: 1707 ggcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaaga 1766
|| || |||||||| |||||| |||||||||||||||||| || ||||||||||| |
Sbjct: 1751 ggtcagagaagtgtgttacttatgctgaaagtcatgatcaagcactagttggtgacaaaa 1810
Query: 1767 caattgcattctggttgatggataaggatatgtatgatttcatggctctggacaggcctt 1826
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct: 1811 ctattgcattctggttgatggacaaggatatgtatgattttatggctctggacagaccgg 1870
Query: 1827 caacgcctcgcatcgatcgtgggatagcattacataaaatgattaggcttgtcacaatgg 1886
|||| ||| |||| |||||||| |||||||| |||||||||||||| ||| |||||||||
Sbjct: 1871 caacacctagcattgatcgtggaatagcattgcataaaatgattagacttatcacaatgg 1930
Query: 1887 gtttaggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatgga 1946
| |||||||| ||||||||||| || || |||||||||||||| || |||||||||||||
Sbjct: 1931 ggttaggaggagaaggctatcttaactttatgggaaatgagttcggacatcctgaatgga 1990
Query: 1947 tagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctgggaataaca 2006
| ||||||||||||| ||| ||| ||||||||||| |||| || ||||||||||
Sbjct: 1991 ttgattttccaagagctccacaagtacttccaaatggtaaattcatcccagggaataaca 2050
Query: 2007 atagctttgataaatgccgccgtagatttgaccttggagatgcagattatcttagatatc 2066
| || | |||||||||||| || ||||||||||| || ||||| || |||||||| ||||
Sbjct: 2051 acagttatgataaatgccgtcgaagatttgacctgggtgatgcggactatcttaggtatc 2110
Query: 2067 gtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatga 2126
|||| |||| ||||||||||| || |||||| || |||| |||||||| |||||||
Sbjct: 2111 gtggcatgctagagtttgaccgcgcgatgcagtctctcgaggaaaaatatgggttcatga 2170
Query: 2127 catctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatctttgaga 2186
|||| || ||| || |||| || |||||||| ||||||||| |||| || |||||||
Sbjct: 2171 catcagaccaccagtacatatctcgaaagcatgaagaggataagatgattatatttgaga 2230
Query: 2187 gaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgactatcgcg 2246
|||||| |||| || |||||||||||||| ||||| || |||||||||||||| || |
Sbjct: 2231 agggagatctggtatttgtgttcaacttccattggagtaacagctattttgactaccgtg 2290
Query: 2247 ttggttgtttcaagcctgggaa 2268
|||||||||| ||||| |||||
Sbjct: 2291 ttggttgtttaaagccagggaa 2312
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 398 agaaaccacgagttgtcccaccaacaggagatgg 431
>gb|D48464.1|D48464 RICS14669A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 448
Score = 535 bits (270), Expect = e-149
Identities = 394/434 (90%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 1757 ggtgacaagacaattgcattctggttgatggataaggatatgtatgatttcatggctctg 1816
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11 ggtgacaagactattgcattctggttgatggataaggatatgtatgattttatggctcta 70
Query: 1817 gacaggccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgattaggctt 1876
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 71 gacagaccttcaacacctcgcattgatcgtgggatagcattacataaaatgattaggctt 130
Query: 1877 gtcacaatgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttgggcat 1936
||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 131 gtcaccatgggcttaggaggcgaaggctatcttaatttcatgggaaatgagtttgggcat 190
Query: 1937 cctgaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcct 1996
||||||||||||||||| |||||||| || |||||||||||||||||||| ||| | ||
Sbjct: 191 cctgaatggatagatttcccaagaggcccgcaaagtcttccaaatggctcggtcctccca 250
Query: 1997 gggaataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagattat 2056
|| || ||| | || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 251 ggaaacaactacagttttgataaatgccgtcgtagatttgaccttggagatgcagattat 310
Query: 2057 cttagatatcgtggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatat 2116
|||||||||| |||||||||||||||||| ||||| |||||||| ||||||| |||||||
Sbjct: 311 cttagatatcatggtatgcaagagtttgatcaggccatgcagcatcttgaggaaaaatat 370
Query: 2117 gaattcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatc 2176
| ||||||||||||||| ||| ||| |||| || || || ||||||||||||||||||
Sbjct: 371 ggattcatgacatctgagcaccagtatatatcgcgcaaacacgaggaggataaggtgatc 430
Query: 2177 atctttgagagagg 2190
| ||| ||||||||
Sbjct: 431 a-cttcgagagagg 443
>gb|AU311881.1|AU311881 AU311881 Oryza sativa anther cDNA Oryza sativa (japonica
cultivar-group) cDNA clone JRA0138, mRNA sequence
Length = 425
Score = 291 bits (147), Expect = 1e-075
Identities = 342/407 (84%)
Strand = Plus / Plus
Query: 1769 attgcattctggttgatggataaggatatgtatgatttcatggctctggacaggccttca 1828
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||
Sbjct: 9 attgcattctggttgatggacaaggatatgtatgattttatggctctggacagaccggca 68
Query: 1829 acgcctcgcatcgatcgtgggatagcattacataaaatgattaggcttgtcacaatgggt 1888
|| ||| |||| |||||||| |||||||| |||||||||||||| ||| ||||||||||
Sbjct: 69 acacctagcattgatcgtggaatagcattgcataaaatgattagacttatcacaatgggg 128
Query: 1889 ttaggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggata 1948
|||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||
Sbjct: 129 ttaggaggagaaggctatcttaactttatgggaaatgagttcggacatcctgaatggatt 188
Query: 1949 gattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctgggaataacaat 2008
||||||||||||| ||| ||| ||||||||||| |||| || |||||||||||
Sbjct: 189 gattttccaagagctccacaagtacttccaaatggtaaattcatcccagggaataacaac 248
Query: 2009 agctttgataaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgt 2068
|| | |||||||||||| || ||||||||||| || ||||| || |||||||| ||||||
Sbjct: 249 agttatgataaatgccgtcgaagatttgacctgggtgatgcggactatcttaggtatcgt 308
Query: 2069 ggtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgaca 2128
|| |||| ||||||||||| || |||||| || |||| |||||||| |||||||||
Sbjct: 309 ggcatgctagagtttgaccgcgcgatgcagtctctcgaggaaaaatatgggttcatgaca 368
Query: 2129 tctgatcactcatatgtatcacggaagcatgaggaggataaggtgat 2175
|| || ||| || |||| || |||||||| ||||||||| ||||
Sbjct: 369 tcagaccaccagtacatatctcgaaagcatgaagaggataagatgat 415
>gb|AU096669.1|AU096669 AU096669 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S14669, mRNA sequence
Length = 709
Score = 266 bits (134), Expect = 6e-068
Identities = 206/230 (89%)
Strand = Plus / Plus
Query: 2194 tttggtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgttggttg 2253
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 1 tttggtattcgtgttcaacttccactggagtaatagctattttgactatcgcgtcggttg 60
Query: 2254 tttcaagcctgggaagtacaagatcgttttagattctgacgatggccttttcggtggatt 2313
||| |||||||| ||||||||||| || || || || ||||||||||| || ||||||||
Sbjct: 61 tttaaagcctggaaagtacaagattgtgttggactcagacgatggcctctttggtggatt 120
Query: 2314 tagtcggcttgatcatgacgctgagtacttcactgctgactggccgcatgacaacaggcc 2373
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 121 cagtcggcttgatcatgatgctgagtacttcactgctgactggccgcatgacaacagacc 180
Query: 2374 gtgttctttctcggtctatgcacccagcagaacagccgtcgtatatgcac 2423
||||| |||||||| || | || |||||||| |||||||| |||||||
Sbjct: 181 atgttcattctcggtgtacaccccaagcagaaccgccgtcgtgtatgcac 230
>dbj|AK108535.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C07, full
insert sequence
Length = 837
Score = 228 bits (115), Expect = 1e-056
Identities = 313/379 (82%)
Strand = Plus / Plus
Query: 1890 taggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatag 1949
||||||| ||||||||||| || || |||||||||||||| || |||||||||||||| |
Sbjct: 1 taggaggagaaggctatcttaactttatgggaaatgagttcggacatcctgaatggattg 60
Query: 1950 attttccaagaggtcctcaaagtcttccaaatggctccgtcattcctgggaataacaata 2009
|||||||||||| ||| ||| ||||||||||| |||| || ||||||||||| |
Sbjct: 61 attttccaagagctccacaagtacttccaaatggtaaattcatcccagggaataacaaca 120
Query: 2010 gctttgataaatgccgccgtagatttgaccttggagatgcagattatcttagatatcgtg 2069
| | |||||||||||| || ||||||||||| || ||||| || |||||||| |||||||
Sbjct: 121 gttatgataaatgccgtcgaagatttgacctgggtgatgcggactatcttaggtatcgtg 180
Query: 2070 gtatgcaagagtttgaccaggcaatgcagcaccttgagggaaaatatgaattcatgacat 2129
| |||| ||||||||||| || |||||| || |||| |||||||| ||||||||||
Sbjct: 181 gcatgctagagtttgaccgcgcgatgcagtctctcgaggaaaaatatgggttcatgacat 240
Query: 2130 ctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatctttgagagag 2189
| || ||| || |||| || |||||||| ||||||||| |||| || ||||||| |
Sbjct: 241 cagaccaccagtacatatctcgaaagcatgaagaggataagatgattatatttgagaagg 300
Query: 2190 gagatttggtcttcgtgttcaacttccactggagcaatagctattttgactatcgcgttg 2249
||||| |||| || |||||||||||||| ||||| || |||||||||||||| || ||||
Sbjct: 301 gagatctggtatttgtgttcaacttccattggagtaacagctattttgactaccgtgttg 360
Query: 2250 gttgtttcaagcctgggaa 2268
||||||| ||||| |||||
Sbjct: 361 gttgtttaaagccagggaa 379
>gb|AACV01009691.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009691, whole
genome shotgun sequence
Length = 45807
Score = 226 bits (114), Expect = 5e-056
Identities = 141/150 (94%)
Strand = Plus / Plus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 30975 aggatatgtatgattttatggctctagacagaccttcaacacctcgcattgatcgtggga 31034
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct: 31035 tagcattacataaaatgattaggcttgtcaccatgggcttaggaggcgaaggctatctta 31094
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
||||||||||||||||||||||||||||||
Sbjct: 31095 atttcatgggaaatgagtttgggcatcctg 31124
Score = 190 bits (96), Expect = 3e-045
Identities = 141/156 (90%)
Strand = Plus / Plus
Query: 2120 ttcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatc 2179
|||||||||||||| ||| ||| |||| || || || |||||||||||||||||||||
Sbjct: 32113 ttcatgacatctgagcaccagtatatatcgcgcaaacacgaggaggataaggtgatcatc 32172
Query: 2180 tttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgac 2239
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 32173 ttcgagagaggagatttggtattcgtgttcaacttccactggagtaatagctattttgac 32232
Query: 2240 tatcgcgttggttgtttcaagcctgggaagtacaag 2275
|||||||| |||||||| |||||||| |||||||||
Sbjct: 32233 tatcgcgtcggttgtttaaagcctggaaagtacaag 32268
Score = 172 bits (87), Expect = 7e-040
Identities = 117/127 (92%)
Strand = Plus / Plus
Query: 931 ggaaccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaa 990
|||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 28058 ggaaccgaagataaacacatatgctaattttagggatgaggtgctaccaagaattaaaaa 28117
Query: 991 gcttggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctt 1050
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 28118 gcttgggtacaatgctgtacagataatggcaatccaggagcactcttattacgcaagctt 28177
Query: 1051 tgggtac 1057
|||||||
Sbjct: 28178 tgggtac 28184
Score = 170 bits (86), Expect = 3e-039
Identities = 122/134 (91%)
Strand = Plus / Plus
Query: 1172 agtcattcatcaaataataccttggatggtttgaatggtttcgatggcaccgatacacat 1231
|||||| ||||||| |||||| ||||||||||||||||||| ||||| || |||||||||
Sbjct: 28731 agtcatgcatcaaacaataccctggatggtttgaatggttttgatggtactgatacacat 28790
Query: 1232 tacttccatggtggtccacgaggccatcattggatgtgggattctcgcctattcaattat 1291
|||||||||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 28791 tacttccatggtggaccacggggtcatcactggatgtgggattctcgcctgttcaactat 28850
Query: 1292 gggagttgggaagt 1305
||||||||||||||
Sbjct: 28851 gggagttgggaagt 28864
Score = 163 bits (82), Expect = 6e-037
Identities = 130/146 (89%)
Strand = Plus / Plus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||
Sbjct: 30142 gcaaagtgacgaatattggaaaatgggtgatatcgtgcacaccctaacgaatagaaggtg 30201
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 30202 gtcagagaagtgtgttacttatgcagaaagtcatgaccaagcactagttggtgacaagac 30261
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||||||||
Sbjct: 30262 tattgcattctggttgatggataagg 30287
Score = 163 bits (82), Expect = 6e-037
Identities = 109/118 (92%)
Strand = Plus / Plus
Query: 729 agatacggatggacacaccatctggtgttaaggattccattcctgcctggatcaagtttt 788
|||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 27037 agattcggatggatacaccatctggcgtaaaggattcaattcctgcctggattaagtttg 27096
Query: 789 ctgtgcaggctccaggtgaaataccatacaacggtatatattatgacccacctgaaga 846
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 27097 ctgtgcaggctccaggtgaaataccgtacaacggtatatattatgatccacctgaaga 27154
Score = 149 bits (75), Expect = 1e-032
Identities = 114/127 (89%)
Strand = Plus / Plus
Query: 1419 cattcactgggaactatggcgagtattttggatttgccactgatgttgatgcagtagttt 1478
|||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 29279 catttactggcaactatggcgaatattttggatttgctactgatgttgatgcagtagttt 29338
Query: 1479 acctaatgctggtaaacgatcttattcgtgggctttatccagaagctgtatccattggcg 1538
|| | |||||||| |||||||| |||| |||||||||||| || |||||| ||||||| |
Sbjct: 29339 acttgatgctggtgaacgatctaattcatgggctttatcctgaggctgtagccattggtg 29398
Query: 1539 aagatgt 1545
|||||||
Sbjct: 29399 aagatgt 29405
Score = 131 bits (66), Expect = 2e-027
Identities = 87/94 (92%)
Strand = Plus / Plus
Query: 1320 tgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcgatttgatgggg 1379
|||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 28969 tgtcgaatgcaaggtggtggcttgaagaatacaagtttgatgggtttcgatttgatgggg 29028
Query: 1380 tgacctccatgatgtatactcaccatggattaca 1413
|||||||||||||||||||||| ||||| |||||
Sbjct: 29029 tgacctccatgatgtatactcatcatggtttaca 29062
Score = 129 bits (65), Expect = 9e-027
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 650 aatgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctatt 709
|||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 26863 aatgagtatggtgtttgggagatttccctgcctaacaatgctgatggatcccctgctatt 26922
Query: 710 cctcatggctcacgtgtaaag 730
|||||||||||||||||||||
Sbjct: 26923 cctcatggctcacgtgtaaag 26943
Score = 119 bits (60), Expect = 8e-024
Identities = 90/100 (90%)
Strand = Plus / Plus
Query: 447 gatacagtgaatataagagattacgtgcggctattgatcaacatgaaggtggtttggatg 506
||||||||||||| |||||| | ||||| |||||||| |||||||||||||| |||||||
Sbjct: 25844 gatacagtgaatacaagagaatgcgtgcagctattgaccaacatgaaggtggcttggatg 25903
Query: 507 cattttcacgcggttacgaaaagcttggatttactcgcag 546
||||||| || |||||||||||||||||||| || |||||
Sbjct: 25904 cattttctcgtggttacgaaaagcttggattcacccgcag 25943
Score = 115 bits (58), Expect = 1e-022
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
|||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 29766 gtcagcgggatgcccacattttgtattcctgttcaagatggtggtgttggttttgactat 29825
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
||| | ||||||||||| || ||||||||||| |||||
Sbjct: 29826 cgtttgcatatggctgtaccggacaaatggatcgaact 29863
Score = 111 bits (56), Expect = 2e-021
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 2042 ggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcac 2101
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 31544 ggagatgcagattatcttagatatcatggtatgcaagagtttgatcaggccatgcagcat 31603
Query: 2102 cttgagggaaaatatg 2117
||||||| ||||||||
Sbjct: 31604 cttgaggaaaaatatg 31619
Score = 101 bits (51), Expect = 2e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||||||||| |||||||| || |||||||||||||||||||| ||| | || ||
Sbjct: 31253 gaatggatagatttcccaagaggcccgcaaagtcttccaaatggctcggtcctcccagga 31312
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgaccttg 2042
|| ||| | || |||||||||||||| ||||||||||||||||
Sbjct: 31313 aacaactacagttttgataaatgccgtcgtagatttgaccttg 31355
Score = 101 bits (51), Expect = 2e-018
Identities = 78/87 (89%)
Strand = Plus / Plus
Query: 846 aggagaaatatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatg 905
|||| |||||||||||| |||| ||||||||||| || || || || |||||||||||||
Sbjct: 27339 aggaaaaatatgtattccaacatcctcaacctaaacgaccaaattcgctgcggatatatg 27398
Query: 906 aatcacatgttggaatgagtagcccgg 932
|||||||| ||||||||||||||||||
Sbjct: 27399 aatcacatattggaatgagtagcccgg 27425
Score = 89.7 bits (45), Expect = 8e-015
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 2291 gacgatggccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgct 2350
||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 32709 gacgatggcctctttggtggattcagtcggcttgatcatgatgctgagtacttcactgct 32768
Query: 2351 g 2351
|
Sbjct: 32769 g 32769
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||||||||| || || ||||| ||| | |||||||| ||||||||||| || |||
Sbjct: 28354 ccaagtagccgtttcggaaccccagaagacttgaaatctctgattgataaagctcacgag 28413
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| ||||| || |||||||||||||||||
Sbjct: 28414 cttggtttgcttgtacttatggatattgttca 28445
Score = 87.7 bits (44), Expect = 3e-014
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccaga 649
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct: 26220 tctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccaga 26279
Score = 81.8 bits (41), Expect = 2e-012
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 347 gtggaggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagatt 406
|||||||| |||||||||||||||||||||||||||||||| || ||||| | |||
Sbjct: 25482 gtggaggataaaccacgagttatcccaccaccaggagatgggcagaagatataccaaatt 25541
Query: 407 gacccaatgttggaagggtttcggggtcaccttgactaccg 447
||||||||| ||||||| |||||| || |||||||||||
Sbjct: 25542 gacccaatgctggaaggatttcggaaccatcttgactaccg 25582
Score = 73.8 bits (37), Expect = 5e-010
Identities = 82/97 (84%)
Strand = Plus / Plus
Query: 49 cgttctgagctgcgctggtgctcctggaaaggtactggtgcctggaggtggcagtgatga 108
|||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| || || ||
Sbjct: 24960 cgttgtgagctgcgcgggtgctcctgggaaggtgctggtgcctggcggtgggagcgacga 25019
Query: 109 cttgctttcctccgcagagccggtcgtggacactcaa 145
|||||| ||||| || || || | |||||| ||||||
Sbjct: 25020 cttgctgtcctctgcggaaccagacgtggaaactcaa 25056
Score = 67.9 bits (34), Expect = 3e-008
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggac 34
||||||||||||||||||||||||||||||||||
Sbjct: 24423 ggacttgccgtcggtgctcttcaggaggaaggac 24456
Score = 65.9 bits (33), Expect = 1e-007
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 2351 gactggccgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagcc 2410
|||||||||||||||||||| || ||||| |||||||| || | || |||||||| |||
Sbjct: 32860 gactggccgcatgacaacagaccatgttcattctcggtgtacaccccaagcagaaccgcc 32919
Query: 2411 gtcgtatatgcac 2423
||||| |||||||
Sbjct: 32920 gtcgtgtatgcac 32932
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 544 cagcgctgaaggtatcacttacagagaatgggctcctggagca 586
|||||||||||| || || ||| |||||||||| |||||||||
Sbjct: 26035 cagcgctgaaggcattacctaccgagaatgggcacctggagca 26077
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 226 bits (114), Expect = 5e-056
Identities = 141/150 (94%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 10011658 aggatatgtatgattttatggctctagacagaccttcaacacctcgcattgatcgtggga 10011599
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct: 10011598 tagcattacataaaatgattaggcttgtcaccatgggcttaggaggcgaaggctatctta 10011539
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
||||||||||||||||||||||||||||||
Sbjct: 10011538 atttcatgggaaatgagtttgggcatcctg 10011509
Score = 190 bits (96), Expect = 3e-045
Identities = 141/156 (90%)
Strand = Plus / Minus
Query: 2120 ttcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatc 2179
|||||||||||||| ||| ||| |||| || || || |||||||||||||||||||||
Sbjct: 10010520 ttcatgacatctgagcaccagtatatatcgcgcaaacacgaggaggataaggtgatcatc 10010461
Query: 2180 tttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgac 2239
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 10010460 ttcgagagaggagatttggtattcgtgttcaacttccactggagtaatagctattttgac 10010401
Query: 2240 tatcgcgttggttgtttcaagcctgggaagtacaag 2275
|||||||| |||||||| |||||||| |||||||||
Sbjct: 10010400 tatcgcgtcggttgtttaaagcctggaaagtacaag 10010365
Score = 172 bits (87), Expect = 7e-040
Identities = 117/127 (92%)
Strand = Plus / Minus
Query: 931 ggaaccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaa 990
|||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 10014575 ggaaccgaagataaacacatatgctaattttagggatgaggtgctaccaagaattaaaaa 10014516
Query: 991 gcttggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctt 1050
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 10014515 gcttgggtacaatgctgtacagataatggcaatccaggagcactcttattacgcaagctt 10014456
Query: 1051 tgggtac 1057
|||||||
Sbjct: 10014455 tgggtac 10014449
Score = 170 bits (86), Expect = 3e-039
Identities = 122/134 (91%)
Strand = Plus / Minus
Query: 1172 agtcattcatcaaataataccttggatggtttgaatggtttcgatggcaccgatacacat 1231
|||||| ||||||| |||||| ||||||||||||||||||| ||||| || |||||||||
Sbjct: 10013902 agtcatgcatcaaacaataccctggatggtttgaatggttttgatggtactgatacacat 10013843
Query: 1232 tacttccatggtggtccacgaggccatcattggatgtgggattctcgcctattcaattat 1291
|||||||||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 10013842 tacttccatggtggaccacggggtcatcactggatgtgggattctcgcctgttcaactat 10013783
Query: 1292 gggagttgggaagt 1305
||||||||||||||
Sbjct: 10013782 gggagttgggaagt 10013769
Score = 163 bits (82), Expect = 6e-037
Identities = 109/118 (92%)
Strand = Plus / Minus
Query: 729 agatacggatggacacaccatctggtgttaaggattccattcctgcctggatcaagtttt 788
|||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 10015596 agattcggatggatacaccatctggcgtaaaggattcaattcctgcctggattaagtttg 10015537
Query: 789 ctgtgcaggctccaggtgaaataccatacaacggtatatattatgacccacctgaaga 846
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 10015536 ctgtgcaggctccaggtgaaataccgtacaacggtatatattatgatccacctgaaga 10015479
Score = 163 bits (82), Expect = 6e-037
Identities = 130/146 (89%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||
Sbjct: 10012491 gcaaagtgacgaatattggaaaatgggtgatatcgtgcacaccctaacgaatagaaggtg 10012432
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 10012431 gtcagagaagtgtgttacttatgcagaaagtcatgaccaagcactagttggtgacaagac 10012372
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||||||||
Sbjct: 10012371 tattgcattctggttgatggataagg 10012346
Score = 149 bits (75), Expect = 1e-032
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 1419 cattcactgggaactatggcgagtattttggatttgccactgatgttgatgcagtagttt 1478
|||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 10013354 catttactggcaactatggcgaatattttggatttgctactgatgttgatgcagtagttt 10013295
Query: 1479 acctaatgctggtaaacgatcttattcgtgggctttatccagaagctgtatccattggcg 1538
|| | |||||||| |||||||| |||| |||||||||||| || |||||| ||||||| |
Sbjct: 10013294 acttgatgctggtgaacgatctaattcatgggctttatcctgaggctgtagccattggtg 10013235
Query: 1539 aagatgt 1545
|||||||
Sbjct: 10013234 aagatgt 10013228
Score = 131 bits (66), Expect = 2e-027
Identities = 87/94 (92%)
Strand = Plus / Minus
Query: 1320 tgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcgatttgatgggg 1379
|||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 10013664 tgtcgaatgcaaggtggtggcttgaagaatacaagtttgatgggtttcgatttgatgggg 10013605
Query: 1380 tgacctccatgatgtatactcaccatggattaca 1413
|||||||||||||||||||||| ||||| |||||
Sbjct: 10013604 tgacctccatgatgtatactcatcatggtttaca 10013571
Score = 129 bits (65), Expect = 9e-027
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 650 aatgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctatt 709
|||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 10015770 aatgagtatggtgtttgggagatttccctgcctaacaatgctgatggatcccctgctatt 10015711
Query: 710 cctcatggctcacgtgtaaag 730
|||||||||||||||||||||
Sbjct: 10015710 cctcatggctcacgtgtaaag 10015690
Score = 119 bits (60), Expect = 8e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 447 gatacagtgaatataagagattacgtgcggctattgatcaacatgaaggtggtttggatg 506
||||||||||||| |||||| | ||||| |||||||| |||||||||||||| |||||||
Sbjct: 10016789 gatacagtgaatacaagagaatgcgtgcagctattgaccaacatgaaggtggcttggatg 10016730
Query: 507 cattttcacgcggttacgaaaagcttggatttactcgcag 546
||||||| || |||||||||||||||||||| || |||||
Sbjct: 10016729 cattttctcgtggttacgaaaagcttggattcacccgcag 10016690
Score = 115 bits (58), Expect = 1e-022
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
|||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 10012867 gtcagcgggatgcccacattttgtattcctgttcaagatggtggtgttggttttgactat 10012808
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
||| | ||||||||||| || ||||||||||| |||||
Sbjct: 10012807 cgtttgcatatggctgtaccggacaaatggatcgaact 10012770
Score = 111 bits (56), Expect = 2e-021
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 2042 ggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcac 2101
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 10011089 ggagatgcagattatcttagatatcatggtatgcaagagtttgatcaggccatgcagcat 10011030
Query: 2102 cttgagggaaaatatg 2117
||||||| ||||||||
Sbjct: 10011029 cttgaggaaaaatatg 10011014
Score = 101 bits (51), Expect = 2e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 846 aggagaaatatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatg 905
|||| |||||||||||| |||| ||||||||||| || || || || |||||||||||||
Sbjct: 10015294 aggaaaaatatgtattccaacatcctcaacctaaacgaccaaattcgctgcggatatatg 10015235
Query: 906 aatcacatgttggaatgagtagcccgg 932
|||||||| ||||||||||||||||||
Sbjct: 10015234 aatcacatattggaatgagtagcccgg 10015208
Score = 101 bits (51), Expect = 2e-018
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||||||||| |||||||| || |||||||||||||||||||| ||| | || ||
Sbjct: 10011380 gaatggatagatttcccaagaggcccgcaaagtcttccaaatggctcggtcctcccagga 10011321
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgaccttg 2042
|| ||| | || |||||||||||||| ||||||||||||||||
Sbjct: 10011320 aacaactacagttttgataaatgccgtcgtagatttgaccttg 10011278
Score = 89.7 bits (45), Expect = 8e-015
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 2291 gacgatggccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgct 2350
||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 10009924 gacgatggcctctttggtggattcagtcggcttgatcatgatgctgagtacttcactgct 10009865
Query: 2351 g 2351
|
Sbjct: 10009864 g 10009864
Score = 87.7 bits (44), Expect = 3e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccaga 649
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct: 10016413 tctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccaga 10016354
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||||||||| || || ||||| ||| | |||||||| ||||||||||| || |||
Sbjct: 10014279 ccaagtagccgtttcggaaccccagaagacttgaaatctctgattgataaagctcacgag 10014220
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| ||||| || |||||||||||||||||
Sbjct: 10014219 cttggtttgcttgtacttatggatattgttca 10014188
Score = 81.8 bits (41), Expect = 2e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 347 gtggaggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagatt 406
|||||||| |||||||||||||||||||||||||||||||| || ||||| | |||
Sbjct: 10017151 gtggaggataaaccacgagttatcccaccaccaggagatgggcagaagatataccaaatt 10017092
Query: 407 gacccaatgttggaagggtttcggggtcaccttgactaccg 447
||||||||| ||||||| |||||| || |||||||||||
Sbjct: 10017091 gacccaatgctggaaggatttcggaaccatcttgactaccg 10017051
Score = 73.8 bits (37), Expect = 5e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 49 cgttctgagctgcgctggtgctcctggaaaggtactggtgcctggaggtggcagtgatga 108
|||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| || || ||
Sbjct: 10017673 cgttgtgagctgcgcgggtgctcctgggaaggtgctggtgcctggcggtgggagcgacga 10017614
Query: 109 cttgctttcctccgcagagccggtcgtggacactcaa 145
|||||| ||||| || || || | |||||| ||||||
Sbjct: 10017613 cttgctgtcctctgcggaaccagacgtggaaactcaa 10017577
Score = 67.9 bits (34), Expect = 3e-008
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggac 34
||||||||||||||||||||||||||||||||||
Sbjct: 10018210 ggacttgccgtcggtgctcttcaggaggaaggac 10018177
Score = 65.9 bits (33), Expect = 1e-007
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 2351 gactggccgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagcc 2410
|||||||||||||||||||| || ||||| |||||||| || | || |||||||| |||
Sbjct: 10009773 gactggccgcatgacaacagaccatgttcattctcggtgtacaccccaagcagaaccgcc 10009714
Query: 2411 gtcgtatatgcac 2423
||||| |||||||
Sbjct: 10009713 gtcgtgtatgcac 10009701
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 544 cagcgctgaaggtatcacttacagagaatgggctcctggagca 586
|||||||||||| || || ||| |||||||||| |||||||||
Sbjct: 10016598 cagcgctgaaggcattacctaccgagaatgggcacctggagca 10016556
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 226 bits (114), Expect = 5e-056
Identities = 141/150 (94%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||||||||
Sbjct: 17359020 aggatatgtatgattttatggctctagacagaccttcaacacctcgcattgatcgtggga 17358961
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |
Sbjct: 17358960 tagcattacataaaatgattaggcttgtcaccatgggcttaggaggcgaaggctatctta 17358901
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
||||||||||||||||||||||||||||||
Sbjct: 17358900 atttcatgggaaatgagtttgggcatcctg 17358871
Score = 190 bits (96), Expect = 3e-045
Identities = 141/156 (90%)
Strand = Plus / Minus
Query: 2120 ttcatgacatctgatcactcatatgtatcacggaagcatgaggaggataaggtgatcatc 2179
|||||||||||||| ||| ||| |||| || || || |||||||||||||||||||||
Sbjct: 17357882 ttcatgacatctgagcaccagtatatatcgcgcaaacacgaggaggataaggtgatcatc 17357823
Query: 2180 tttgagagaggagatttggtcttcgtgttcaacttccactggagcaatagctattttgac 2239
|| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 17357822 ttcgagagaggagatttggtattcgtgttcaacttccactggagtaatagctattttgac 17357763
Query: 2240 tatcgcgttggttgtttcaagcctgggaagtacaag 2275
|||||||| |||||||| |||||||| |||||||||
Sbjct: 17357762 tatcgcgtcggttgtttaaagcctggaaagtacaag 17357727
Score = 172 bits (87), Expect = 7e-040
Identities = 117/127 (92%)
Strand = Plus / Minus
Query: 931 ggaaccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaa 990
|||||| |||||||| ||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 17361937 ggaaccgaagataaacacatatgctaattttagggatgaggtgctaccaagaattaaaaa 17361878
Query: 991 gcttggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctt 1050
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 17361877 gcttgggtacaatgctgtacagataatggcaatccaggagcactcttattacgcaagctt 17361818
Query: 1051 tgggtac 1057
|||||||
Sbjct: 17361817 tgggtac 17361811
Score = 170 bits (86), Expect = 3e-039
Identities = 122/134 (91%)
Strand = Plus / Minus
Query: 1172 agtcattcatcaaataataccttggatggtttgaatggtttcgatggcaccgatacacat 1231
|||||| ||||||| |||||| ||||||||||||||||||| ||||| || |||||||||
Sbjct: 17361264 agtcatgcatcaaacaataccctggatggtttgaatggttttgatggtactgatacacat 17361205
Query: 1232 tacttccatggtggtccacgaggccatcattggatgtgggattctcgcctattcaattat 1291
|||||||||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||
Sbjct: 17361204 tacttccatggtggaccacggggtcatcactggatgtgggattctcgcctgttcaactat 17361145
Query: 1292 gggagttgggaagt 1305
||||||||||||||
Sbjct: 17361144 gggagttgggaagt 17361131
Score = 163 bits (82), Expect = 6e-037
Identities = 109/118 (92%)
Strand = Plus / Minus
Query: 729 agatacggatggacacaccatctggtgttaaggattccattcctgcctggatcaagtttt 788
|||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 17362958 agattcggatggatacaccatctggcgtaaaggattcaattcctgcctggattaagtttg 17362899
Query: 789 ctgtgcaggctccaggtgaaataccatacaacggtatatattatgacccacctgaaga 846
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 17362898 ctgtgcaggctccaggtgaaataccgtacaacggtatatattatgatccacctgaaga 17362841
Score = 163 bits (82), Expect = 6e-037
Identities = 130/146 (89%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||||
Sbjct: 17359853 gcaaagtgacgaatattggaaaatgggtgatatcgtgcacaccctaacgaatagaaggtg 17359794
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 17359793 gtcagagaagtgtgttacttatgcagaaagtcatgaccaagcactagttggtgacaagac 17359734
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||||||||
Sbjct: 17359733 tattgcattctggttgatggataagg 17359708
Score = 149 bits (75), Expect = 1e-032
Identities = 114/127 (89%)
Strand = Plus / Minus
Query: 1419 cattcactgggaactatggcgagtattttggatttgccactgatgttgatgcagtagttt 1478
|||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 17360716 catttactggcaactatggcgaatattttggatttgctactgatgttgatgcagtagttt 17360657
Query: 1479 acctaatgctggtaaacgatcttattcgtgggctttatccagaagctgtatccattggcg 1538
|| | |||||||| |||||||| |||| |||||||||||| || |||||| ||||||| |
Sbjct: 17360656 acttgatgctggtgaacgatctaattcatgggctttatcctgaggctgtagccattggtg 17360597
Query: 1539 aagatgt 1545
|||||||
Sbjct: 17360596 aagatgt 17360590
Score = 131 bits (66), Expect = 2e-027
Identities = 87/94 (92%)
Strand = Plus / Minus
Query: 1320 tgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcgatttgatgggg 1379
|||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 17361026 tgtcgaatgcaaggtggtggcttgaagaatacaagtttgatgggtttcgatttgatgggg 17360967
Query: 1380 tgacctccatgatgtatactcaccatggattaca 1413
|||||||||||||||||||||| ||||| |||||
Sbjct: 17360966 tgacctccatgatgtatactcatcatggtttaca 17360933
Score = 129 bits (65), Expect = 9e-027
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 650 aatgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctatt 709
|||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 17363132 aatgagtatggtgtttgggagatttccctgcctaacaatgctgatggatcccctgctatt 17363073
Query: 710 cctcatggctcacgtgtaaag 730
|||||||||||||||||||||
Sbjct: 17363072 cctcatggctcacgtgtaaag 17363052
Score = 119 bits (60), Expect = 8e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 447 gatacagtgaatataagagattacgtgcggctattgatcaacatgaaggtggtttggatg 506
||||||||||||| |||||| | ||||| |||||||| |||||||||||||| |||||||
Sbjct: 17364151 gatacagtgaatacaagagaatgcgtgcagctattgaccaacatgaaggtggcttggatg 17364092
Query: 507 cattttcacgcggttacgaaaagcttggatttactcgcag 546
||||||| || |||||||||||||||||||| || |||||
Sbjct: 17364091 cattttctcgtggttacgaaaagcttggattcacccgcag 17364052
Score = 115 bits (58), Expect = 1e-022
Identities = 88/98 (89%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
|||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct: 17360229 gtcagcgggatgcccacattttgtattcctgttcaagatggtggtgttggttttgactat 17360170
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
||| | ||||||||||| || ||||||||||| |||||
Sbjct: 17360169 cgtttgcatatggctgtaccggacaaatggatcgaact 17360132
Score = 111 bits (56), Expect = 2e-021
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 2042 ggagatgcagattatcttagatatcgtggtatgcaagagtttgaccaggcaatgcagcac 2101
||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct: 17358451 ggagatgcagattatcttagatatcatggtatgcaagagtttgatcaggccatgcagcat 17358392
Query: 2102 cttgagggaaaatatg 2117
||||||| ||||||||
Sbjct: 17358391 cttgaggaaaaatatg 17358376
Score = 101 bits (51), Expect = 2e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 846 aggagaaatatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatg 905
|||| |||||||||||| |||| ||||||||||| || || || || |||||||||||||
Sbjct: 17362656 aggaaaaatatgtattccaacatcctcaacctaaacgaccaaattcgctgcggatatatg 17362597
Query: 906 aatcacatgttggaatgagtagcccgg 932
|||||||| ||||||||||||||||||
Sbjct: 17362596 aatcacatattggaatgagtagcccgg 17362570
Score = 101 bits (51), Expect = 2e-018
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||||||||| |||||||| || |||||||||||||||||||| ||| | || ||
Sbjct: 17358742 gaatggatagatttcccaagaggcccgcaaagtcttccaaatggctcggtcctcccagga 17358683
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgaccttg 2042
|| ||| | || |||||||||||||| ||||||||||||||||
Sbjct: 17358682 aacaactacagttttgataaatgccgtcgtagatttgaccttg 17358640
Score = 89.7 bits (45), Expect = 8e-015
Identities = 57/61 (93%)
Strand = Plus / Minus
Query: 2291 gacgatggccttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgct 2350
||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 17357286 gacgatggcctctttggtggattcagtcggcttgatcatgatgctgagtacttcactgct 17357227
Query: 2351 g 2351
|
Sbjct: 17357226 g 17357226
Score = 87.7 bits (44), Expect = 3e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccaga 649
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct: 17363775 tctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccaga 17363716
Score = 87.7 bits (44), Expect = 3e-014
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||||||||| || || ||||| ||| | |||||||| ||||||||||| || |||
Sbjct: 17361641 ccaagtagccgtttcggaaccccagaagacttgaaatctctgattgataaagctcacgag 17361582
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| ||||| || |||||||||||||||||
Sbjct: 17361581 cttggtttgcttgtacttatggatattgttca 17361550
Score = 81.8 bits (41), Expect = 2e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 347 gtggaggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagatt 406
|||||||| |||||||||||||||||||||||||||||||| || ||||| | |||
Sbjct: 17364513 gtggaggataaaccacgagttatcccaccaccaggagatgggcagaagatataccaaatt 17364454
Query: 407 gacccaatgttggaagggtttcggggtcaccttgactaccg 447
||||||||| ||||||| |||||| || |||||||||||
Sbjct: 17364453 gacccaatgctggaaggatttcggaaccatcttgactaccg 17364413
Score = 73.8 bits (37), Expect = 5e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 49 cgttctgagctgcgctggtgctcctggaaaggtactggtgcctggaggtggcagtgatga 108
|||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| || || ||
Sbjct: 17365035 cgttgtgagctgcgcgggtgctcctgggaaggtgctggtgcctggcggtgggagcgacga 17364976
Query: 109 cttgctttcctccgcagagccggtcgtggacactcaa 145
|||||| ||||| || || || | |||||| ||||||
Sbjct: 17364975 cttgctgtcctctgcggaaccagacgtggaaactcaa 17364939
Score = 67.9 bits (34), Expect = 3e-008
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggac 34
||||||||||||||||||||||||||||||||||
Sbjct: 17365572 ggacttgccgtcggtgctcttcaggaggaaggac 17365539
Score = 65.9 bits (33), Expect = 1e-007
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 2351 gactggccgcatgacaacaggccgtgttctttctcggtctatgcacccagcagaacagcc 2410
|||||||||||||||||||| || ||||| |||||||| || | || |||||||| |||
Sbjct: 17357135 gactggccgcatgacaacagaccatgttcattctcggtgtacaccccaagcagaaccgcc 17357076
Query: 2411 gtcgtatatgcac 2423
||||| |||||||
Sbjct: 17357075 gtcgtgtatgcac 17357063
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 544 cagcgctgaaggtatcacttacagagaatgggctcctggagca 586
|||||||||||| || || ||| |||||||||| |||||||||
Sbjct: 17363960 cagcgctgaaggcattacctaccgagaatgggcacctggagca 17363918
>gb|AU030097.1|AU030097 AU030097 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E50621_2Z,
mRNA sequence
Length = 572
Score = 188 bits (95), Expect = 1e-044
Identities = 161/183 (87%)
Strand = Plus / Plus
Query: 2241 atcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacgatggcc 2300
||||||| |||||||| |||||||| ||||||||||| || || || || ||||||||||
Sbjct: 13 atcgcgtcggttgtttaaagcctggaaagtacaagattgtgttggactcagacgatggcc 72
Query: 2301 ttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgctgactggccgc 2360
| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 73 tctttggtggattcagtcggcttgatcatgatgctgagtacttcactgctgactggccgc 132
Query: 2361 atgacaacaggccgtgttctttctcggtctatgcacccagcagaacagccgtcgtatatg 2420
|||||||||| || ||||| |||||||| || | || |||||||| |||||||| ||||
Sbjct: 133 atgacaacagaccatgttcattctcggtgtacaccccaagcagaaccgccgtcgtgtatg 192
Query: 2421 cac 2423
|||
Sbjct: 193 cac 195
>gb|AU030096.1|AU030096 AU030096 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E50621_1A,
mRNA sequence
Length = 402
Score = 168 bits (85), Expect = 1e-038
Identities = 158/183 (86%)
Strand = Plus / Plus
Query: 2241 atcgcgttggttgtttcaagcctgggaagtacaagatcgttttagattctgacgatggcc 2300
||||||| |||||||| |||||||| ||||||||||| || || || || ||||||||||
Sbjct: 1 atcgcgtcggttgtttaaagcctggaaagtacaagattgtgttggactcagacgatggcc 60
Query: 2301 ttttcggtggatttagtcggcttgatcatgacgctgagtacttcactgctgactggccgc 2360
| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 tctttggtggattcagtcggcttgatcatgatgctgagtacttcactgctgactggccgc 120
Query: 2361 atgacaacaggccgtgttctttctcggtctatgcacccagcagaacagccgtcgtatatg 2420
||||||| || ||||| |||||||| || | || |||||||| |||||||| ||||
Sbjct: 121 atgacaagtnaccatgttcattctcggtgtacacnccaagcagaaccgccgtcgtgtatg 180
Query: 2421 cac 2423
|||
Sbjct: 181 cac 183
>emb|AL731641.4| Oryza sativa (japonica cultivar-group) chromosome 4 clone OSJNBa0042I15,
*** SEQUENCING IN PROGRESS ***, 11 ordered pieces
Length = 158354
Score = 163 bits (82), Expect = 6e-037
Identities = 109/118 (92%)
Strand = Plus / Minus
Query: 729 agatacggatggacacaccatctggtgttaaggattccattcctgcctggatcaagtttt 788
|||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 122307 agattcggatggatacaccatctggcgtaaaggattctattcctgcctggattaagtttg 122248
Query: 789 ctgtgcaggctccaggtgaaataccatacaacggtatatattatgacccacctgaaga 846
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 122247 ctgtgcaggctccaggtgaaataccgtacaacggtatatattatgatccacctgaaga 122190
Score = 129 bits (65), Expect = 9e-027
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 650 aatgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctatt 709
|||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 122481 aatgagtatggtgtttgggagatttccctgcctaacaatgctgatggatcccctgctatt 122422
Query: 710 cctcatggctcacgtgtaaag 730
|||||||||||||||||||||
Sbjct: 122421 cctcatggctcacgtgtaaag 122401
Score = 119 bits (60), Expect = 8e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 447 gatacagtgaatataagagattacgtgcggctattgatcaacatgaaggtggtttggatg 506
||||||||||||| |||||| | ||||| |||||||| |||||||||||||| |||||||
Sbjct: 123500 gatacagtgaatacaagagaatgcgtgcagctattgaccaacatgaaggtggcttggatg 123441
Query: 507 cattttcacgcggttacgaaaagcttggatttactcgcag 546
||||||| || |||||||||||||||||||| || |||||
Sbjct: 123440 cattttctcgtggttacgaaaagcttggattcacccgcag 123401
Score = 101 bits (51), Expect = 2e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 846 aggagaaatatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatg 905
|||| |||||||||||| |||| ||||||||||| || || || || |||||||||||||
Sbjct: 122005 aggaaaaatatgtattccaacatcctcaacctaaacgaccaaattcgctgcggatatatg 121946
Query: 906 aatcacatgttggaatgagtagcccgg 932
|||||||| ||||||||||||||||||
Sbjct: 121945 aatcacatattggaatgagtagcccgg 121919
Score = 87.7 bits (44), Expect = 3e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccaga 649
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct: 123124 tctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccaga 123065
Score = 81.8 bits (41), Expect = 2e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 347 gtggaggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagatt 406
|||||||| |||||||||||||||||||||||||||||||| || ||||| | |||
Sbjct: 123862 gtggaggataaaccacgagttatcccaccaccaggagatgggcagaagatataccaaatt 123803
Query: 407 gacccaatgttggaagggtttcggggtcaccttgactaccg 447
||||||||| ||||||| |||||| || |||||||||||
Sbjct: 123802 gacccaatgctggaaggatttcggaaccatcttgactaccg 123762
Score = 73.8 bits (37), Expect = 5e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 49 cgttctgagctgcgctggtgctcctggaaaggtactggtgcctggaggtggcagtgatga 108
|||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| || || ||
Sbjct: 124384 cgttgtgagctgcgcgggtgctcctgggaaggtgctggtgcctggcggtgggagcgacga 124325
Query: 109 cttgctttcctccgcagagccggtcgtggacactcaa 145
|||||| ||||| || || || | |||||| ||||||
Sbjct: 124324 cttgctgtcctctgcggaaccagacgtggaaactcaa 124288
Score = 67.9 bits (34), Expect = 3e-008
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggac 34
||||||||||||||||||||||||||||||||||
Sbjct: 124921 ggacttgccgtcggtgctcttcaggaggaaggac 124888
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 544 cagcgctgaaggtatcacttacagagaatgggctcctggagca 586
|||||||||||| || || ||| |||||||||| |||||||||
Sbjct: 123309 cagcgctgaaggcattacctaccgagaatgggcacctggagca 123267
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 163 bits (82), Expect = 6e-037
Identities = 109/118 (92%)
Strand = Plus / Minus
Query: 729 agatacggatggacacaccatctggtgttaaggattccattcctgcctggatcaagtttt 788
|||| |||||||| ||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct: 20249805 agattcggatggatacaccatctggcgtaaaggattctattcctgcctggattaagtttg 20249746
Query: 789 ctgtgcaggctccaggtgaaataccatacaacggtatatattatgacccacctgaaga 846
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 20249745 ctgtgcaggctccaggtgaaataccgtacaacggtatatattatgatccacctgaaga 20249688
Score = 129 bits (65), Expect = 9e-027
Identities = 77/81 (95%)
Strand = Plus / Minus
Query: 650 aatgagtacggcgtttgggagattttcctgcctaacaatgctgatggttcccctgctatt 709
|||||||| || ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 20249979 aatgagtatggtgtttgggagatttccctgcctaacaatgctgatggatcccctgctatt 20249920
Query: 710 cctcatggctcacgtgtaaag 730
|||||||||||||||||||||
Sbjct: 20249919 cctcatggctcacgtgtaaag 20249899
Score = 119 bits (60), Expect = 8e-024
Identities = 90/100 (90%)
Strand = Plus / Minus
Query: 447 gatacagtgaatataagagattacgtgcggctattgatcaacatgaaggtggtttggatg 506
||||||||||||| |||||| | ||||| |||||||| |||||||||||||| |||||||
Sbjct: 20250998 gatacagtgaatacaagagaatgcgtgcagctattgaccaacatgaaggtggcttggatg 20250939
Query: 507 cattttcacgcggttacgaaaagcttggatttactcgcag 546
||||||| || |||||||||||||||||||| || |||||
Sbjct: 20250938 cattttctcgtggttacgaaaagcttggattcacccgcag 20250899
Score = 101 bits (51), Expect = 2e-018
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 846 aggagaaatatgtattcaaacaccctcaacctaagcggcccaagtcactgcggatatatg 905
|||| |||||||||||| |||| ||||||||||| || || || || |||||||||||||
Sbjct: 20249503 aggaaaaatatgtattccaacatcctcaacctaaacgaccaaattcgctgcggatatatg 20249444
Query: 906 aatcacatgttggaatgagtagcccgg 932
|||||||| ||||||||||||||||||
Sbjct: 20249443 aatcacatattggaatgagtagcccgg 20249417
Score = 87.7 bits (44), Expect = 3e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccaga 649
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct: 20250622 tctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccaga 20250563
Score = 81.8 bits (41), Expect = 2e-012
Identities = 86/101 (85%)
Strand = Plus / Minus
Query: 347 gtggaggagaaaccacgagttatcccaccaccaggagatggccaacgaatatatgagatt 406
|||||||| |||||||||||||||||||||||||||||||| || ||||| | |||
Sbjct: 20251360 gtggaggataaaccacgagttatcccaccaccaggagatgggcagaagatataccaaatt 20251301
Query: 407 gacccaatgttggaagggtttcggggtcaccttgactaccg 447
||||||||| ||||||| |||||| || |||||||||||
Sbjct: 20251300 gacccaatgctggaaggatttcggaaccatcttgactaccg 20251260
Score = 73.8 bits (37), Expect = 5e-010
Identities = 82/97 (84%)
Strand = Plus / Minus
Query: 49 cgttctgagctgcgctggtgctcctggaaaggtactggtgcctggaggtggcagtgatga 108
|||| |||||||||| ||||||||||| ||||| ||||||||||| ||||| || || ||
Sbjct: 20251882 cgttgtgagctgcgcgggtgctcctgggaaggtgctggtgcctggcggtgggagcgacga 20251823
Query: 109 cttgctttcctccgcagagccggtcgtggacactcaa 145
|||||| ||||| || || || | |||||| ||||||
Sbjct: 20251822 cttgctgtcctctgcggaaccagacgtggaaactcaa 20251786
Score = 67.9 bits (34), Expect = 3e-008
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1 ggacttgccgtcggtgctcttcaggaggaaggac 34
||||||||||||||||||||||||||||||||||
Sbjct: 20252419 ggacttgccgtcggtgctcttcaggaggaaggac 20252386
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 544 cagcgctgaaggtatcacttacagagaatgggctcctggagca 586
|||||||||||| || || ||| |||||||||| |||||||||
Sbjct: 20250807 cagcgctgaaggcattacctaccgagaatgggcacctggagca 20250765
>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0475F05
Length = 147522
Score = 155 bits (78), Expect = 2e-034
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||||||||| || |||| ||| |||| |||||||| |
Sbjct: 63210 aggatatgtatgattttatggctctggacagaccggcaacacctagcattgatcgtggaa 63151
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
Sbjct: 63150 tagcattgcataaaatgattagacttatcacaatggggttaggaggagaaggctatctta 63091
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
| || |||||||||||||| || |||||||
Sbjct: 63090 actttatgggaaatgagttcggacatcctg 63061
Score = 129 bits (65), Expect = 9e-027
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1181 tcaaataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccat 1240
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 66347 tcaaataataccctagatgggttgaacggttttgatggtacagatacgcattactttcat 66288
Query: 1241 ggtggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgg 1300
||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 66287 agtggttcacgcggccatcattggatgtgggattctcgccttttcaactatgggaattgg 66228
Query: 1301 gaagt 1305
|||||
Sbjct: 66227 gaagt 66223
Score = 113 bits (57), Expect = 5e-022
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 935 ccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaagctt 994
|||||||| || || ||||| ||||| || |||||||||||||||||||| |||||||||
Sbjct: 67969 ccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaatcaaaaagctt 67910
Query: 995 ggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttggg 1054
|||||||||||||| || ||||||||||| || || || | ||||||| ||||||||||
Sbjct: 67909 ggatacaatgcagtgcaaataatggcaattcaagagcatgcatattatggaagctttggg 67850
Query: 1055 t 1055
|
Sbjct: 67849 t 67849
Score = 107 bits (54), Expect = 3e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
||||| ||||||||||||||| | ||||| ||||||||||| |||||||||||||||
Sbjct: 64397 gtcagtggaatgcctacatttgcccttcctgttcaagatggtggggttggttttgattat 64338
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
|| |||||||||||||| || |||||||||||||||||
Sbjct: 64337 cgccttcatatggctgttcctgacaaatggattgaact 64300
Score = 107 bits (54), Expect = 3e-020
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||| |||| |||| | |||||||| || |||||||| | || || ||||||||
Sbjct: 63807 gcaaagtgatgaatcttggaagatgggtgatattgtgcacacactgactaacagaaggtg 63748
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| |||||||||||||||||| || ||||||||||| ||
Sbjct: 63747 gtcagagaagtgtgttacttatgctgaaagtcatgatcaagcactagttggtgacaaaac 63688
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||| ||||
Sbjct: 63687 tattgcattctggttgatggacaagg 63662
Score = 103 bits (52), Expect = 5e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||| | |||||||| ||||||||||||||||||| |||||||||
Sbjct: 68842 atggaaactccatctggtataaaggattctattcctgcctggatcaagtactctgtgcag 68783
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagagg 848
|| |||| ||||| |||||||| || ||||||||||| || ||||||||||
Sbjct: 68782 gccgcaggagaaatcccatacaatggaatatattatgatcctcctgaagagg 68731
Score = 103 bits (52), Expect = 5e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 2153 aagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaac 2212
|||||||| ||||||||| |||| || ||||||| |||||| |||| || |||||||||
Sbjct: 61972 aagcatgaagaggataagatgattatatttgagaagggagatctggtatttgtgttcaac 61913
Query: 2213 ttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaa 2268
||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 61912 ttccattggagtaacagctattttgactaccgtgttggttgtttaaagccagggaa 61857
Score = 89.7 bits (45), Expect = 8e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 69001 gtttgggagatttttctgcctaacaatgctgatggctcatctcctattccacatggctca 68942
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 68941 cgtgtaaag 68933
Score = 83.8 bits (42), Expect = 5e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1445 tttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttatt 1504
||||||||||||||||||| |||||||||||||||| | ||||||||||| ||| | |||
Sbjct: 65846 tttggatttgccactgatgctgatgcagtagtttacttgatgctggtaaatgatttaatt 65787
Query: 1505 cgtgggctttatcc 1518
| ||| ||||||||
Sbjct: 65786 catggactttatcc 65773
Score = 77.8 bits (39), Expect = 3e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1310 agatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcga 1369
||||||||| | || ||||| ||||||||||| || || ||||| |||||||| || ||
Sbjct: 66121 agatttctactatccaatgcaagatggtggctcgaggagtataagtttgatggtttcaga 66062
Query: 1370 tttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||||| || || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 66061 tttgacggtgtaacctcaatgatgtacactcatcatggattacaagt 66015
Score = 71.9 bits (36), Expect = 2e-009
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgc 633
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 69688 tctgcagcattagtaggtgacttcaacaattggaatccaaatgc 69645
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 68529 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 68470
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 68469 gaatgagtagc 68459
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||| ||||||||||||| ||| ||| ||||||||||| |||| || |||
Sbjct: 62920 gaatggattgattttccaagagctccacaagtacttccaaatggtaaattcatcccaggg 62861
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgacct 2040
|||||||| || | |||||||||||| || |||||||||||
Sbjct: 62860 aataacaacagttatgataaatgccgtcgaagatttgacct 62820
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 70937 agaaaccacgagttgtcccaccaacaggagatgg 70904
Score = 48.1 bits (24), Expect = 0.026
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||| ||||| ||||| ||||| || |||| || | ||||||||||| ||||||
Sbjct: 67500 ccaagtagtcgtttcgggaccccagaagatttaaagtcattgattgataaagctcatgag 67441
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| || | ||||| |||||| |||||||
Sbjct: 67440 cttggtttagttgtgctcatggatgttgttca 67409
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgacc 2087
||||| || |||||||| |||||||| |||| |||||||||||
Sbjct: 62581 gatgcggactatcttaggtatcgtggcatgctagagtttgacc 62539
>gb|AACV01004553.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004553, whole
genome shotgun sequence
Length = 12903
Score = 155 bits (78), Expect = 2e-034
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||||||||| || |||| ||| |||| |||||||| |
Sbjct: 7052 aggatatgtatgattttatggctctggacagaccggcaacacctagcattgatcgtggaa 6993
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
Sbjct: 6992 tagcattgcataaaatgattagacttatcacaatggggttaggaggagaaggctatctta 6933
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
| || |||||||||||||| || |||||||
Sbjct: 6932 actttatgggaaatgagttcggacatcctg 6903
Score = 129 bits (65), Expect = 9e-027
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1181 tcaaataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccat 1240
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 10188 tcaaataataccctagatgggttgaacggttttgatggtacagatacgcattactttcat 10129
Query: 1241 ggtggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgg 1300
||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 10128 agtggttcacgcggccatcattggatgtgggattctcgccttttcaactatgggaattgg 10069
Query: 1301 gaagt 1305
|||||
Sbjct: 10068 gaagt 10064
Score = 113 bits (57), Expect = 5e-022
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 935 ccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaagctt 994
|||||||| || || ||||| ||||| || |||||||||||||||||||| |||||||||
Sbjct: 11810 ccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaatcaaaaagctt 11751
Query: 995 ggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttggg 1054
|||||||||||||| || ||||||||||| || || || | ||||||| ||||||||||
Sbjct: 11750 ggatacaatgcagtgcaaataatggcaattcaagagcatgcatattatggaagctttggg 11691
Query: 1055 t 1055
|
Sbjct: 11690 t 11690
Score = 107 bits (54), Expect = 3e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
||||| ||||||||||||||| | ||||| ||||||||||| |||||||||||||||
Sbjct: 8238 gtcagtggaatgcctacatttgcccttcctgttcaagatggtggggttggttttgattat 8179
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
|| |||||||||||||| || |||||||||||||||||
Sbjct: 8178 cgccttcatatggctgttcctgacaaatggattgaact 8141
Score = 107 bits (54), Expect = 3e-020
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||| |||| |||| | |||||||| || |||||||| | || || ||||||||
Sbjct: 7649 gcaaagtgatgaatcttggaagatgggtgatattgtgcacacactgactaacagaaggtg 7590
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| |||||||||||||||||| || ||||||||||| ||
Sbjct: 7589 gtcagagaagtgtgttacttatgctgaaagtcatgatcaagcactagttggtgacaaaac 7530
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||| ||||
Sbjct: 7529 tattgcattctggttgatggacaagg 7504
Score = 103 bits (52), Expect = 5e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 2153 aagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaac 2212
|||||||| ||||||||| |||| || ||||||| |||||| |||| || |||||||||
Sbjct: 5814 aagcatgaagaggataagatgattatatttgagaagggagatctggtatttgtgttcaac 5755
Query: 2213 ttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaa 2268
||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 5754 ttccattggagtaacagctattttgactaccgtgttggttgtttaaagccagggaa 5699
Score = 83.8 bits (42), Expect = 5e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1445 tttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttatt 1504
||||||||||||||||||| |||||||||||||||| | ||||||||||| ||| | |||
Sbjct: 9687 tttggatttgccactgatgctgatgcagtagtttacttgatgctggtaaatgatttaatt 9628
Query: 1505 cgtgggctttatcc 1518
| ||| ||||||||
Sbjct: 9627 catggactttatcc 9614
Score = 77.8 bits (39), Expect = 3e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1310 agatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcga 1369
||||||||| | || ||||| ||||||||||| || || ||||| |||||||| || ||
Sbjct: 9962 agatttctactatccaatgcaagatggtggctcgaggagtataagtttgatggtttcaga 9903
Query: 1370 tttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||||| || || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 9902 tttgacggtgtaacctcaatgatgtacactcatcatggattacaagt 9856
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 12370 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 12311
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 12310 gaatgagtagc 12300
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||| ||||||||||||| ||| ||| ||||||||||| |||| || |||
Sbjct: 6762 gaatggattgattttccaagagctccacaagtacttccaaatggtaaattcatcccaggg 6703
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgacct 2040
|||||||| || | |||||||||||| || |||||||||||
Sbjct: 6702 aataacaacagttatgataaatgccgtcgaagatttgacct 6662
Score = 48.1 bits (24), Expect = 0.026
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||| ||||| ||||| ||||| || |||| || | ||||||||||| ||||||
Sbjct: 11341 ccaagtagtcgtttcgggaccccagaagatttaaagtcattgattgataaagctcatgag 11282
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| || | ||||| |||||| |||||||
Sbjct: 11281 cttggtttagttgtgctcatggatgttgttca 11250
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgacc 2087
||||| || |||||||| |||||||| |||| |||||||||||
Sbjct: 6423 gatgcggactatcttaggtatcgtggcatgctagagtttgacc 6381
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 155 bits (78), Expect = 2e-034
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||||||||| || |||| ||| |||| |||||||| |
Sbjct: 561961 aggatatgtatgattttatggctctggacagaccggcaacacctagcattgatcgtggaa 561902
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
Sbjct: 561901 tagcattgcataaaatgattagacttatcacaatggggttaggaggagaaggctatctta 561842
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
| || |||||||||||||| || |||||||
Sbjct: 561841 actttatgggaaatgagttcggacatcctg 561812
Score = 129 bits (65), Expect = 9e-027
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1181 tcaaataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccat 1240
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 565098 tcaaataataccctagatgggttgaacggttttgatggtacagatacgcattactttcat 565039
Query: 1241 ggtggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgg 1300
||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 565038 agtggttcacgcggccatcattggatgtgggattctcgccttttcaactatgggaattgg 564979
Query: 1301 gaagt 1305
|||||
Sbjct: 564978 gaagt 564974
Score = 113 bits (57), Expect = 5e-022
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 935 ccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaagctt 994
|||||||| || || ||||| ||||| || |||||||||||||||||||| |||||||||
Sbjct: 566720 ccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaatcaaaaagctt 566661
Query: 995 ggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttggg 1054
|||||||||||||| || ||||||||||| || || || | ||||||| ||||||||||
Sbjct: 566660 ggatacaatgcagtgcaaataatggcaattcaagagcatgcatattatggaagctttggg 566601
Query: 1055 t 1055
|
Sbjct: 566600 t 566600
Score = 107 bits (54), Expect = 3e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
||||| ||||||||||||||| | ||||| ||||||||||| |||||||||||||||
Sbjct: 563148 gtcagtggaatgcctacatttgcccttcctgttcaagatggtggggttggttttgattat 563089
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
|| |||||||||||||| || |||||||||||||||||
Sbjct: 563088 cgccttcatatggctgttcctgacaaatggattgaact 563051
Score = 107 bits (54), Expect = 3e-020
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||| |||| |||| | |||||||| || |||||||| | || || ||||||||
Sbjct: 562558 gcaaagtgatgaatcttggaagatgggtgatattgtgcacacactgactaacagaaggtg 562499
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| |||||||||||||||||| || ||||||||||| ||
Sbjct: 562498 gtcagagaagtgtgttacttatgctgaaagtcatgatcaagcactagttggtgacaaaac 562439
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||| ||||
Sbjct: 562438 tattgcattctggttgatggacaagg 562413
Score = 103 bits (52), Expect = 5e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||| | |||||||| ||||||||||||||||||| |||||||||
Sbjct: 567593 atggaaactccatctggtataaaggattctattcctgcctggatcaagtactctgtgcag 567534
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagagg 848
|| |||| ||||| |||||||| || ||||||||||| || ||||||||||
Sbjct: 567533 gccgcaggagaaatcccatacaatggaatatattatgatcctcctgaagagg 567482
Score = 103 bits (52), Expect = 5e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 2153 aagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaac 2212
|||||||| ||||||||| |||| || ||||||| |||||| |||| || |||||||||
Sbjct: 560723 aagcatgaagaggataagatgattatatttgagaagggagatctggtatttgtgttcaac 560664
Query: 2213 ttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaa 2268
||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 560663 ttccattggagtaacagctattttgactaccgtgttggttgtttaaagccagggaa 560608
Score = 89.7 bits (45), Expect = 8e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 567752 gtttgggagatttttctgcctaacaatgctgatggctcatctcctattccacatggctca 567693
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 567692 cgtgtaaag 567684
Score = 83.8 bits (42), Expect = 5e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1445 tttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttatt 1504
||||||||||||||||||| |||||||||||||||| | ||||||||||| ||| | |||
Sbjct: 564597 tttggatttgccactgatgctgatgcagtagtttacttgatgctggtaaatgatttaatt 564538
Query: 1505 cgtgggctttatcc 1518
| ||| ||||||||
Sbjct: 564537 catggactttatcc 564524
Score = 77.8 bits (39), Expect = 3e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1310 agatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcga 1369
||||||||| | || ||||| ||||||||||| || || ||||| |||||||| || ||
Sbjct: 564872 agatttctactatccaatgcaagatggtggctcgaggagtataagtttgatggtttcaga 564813
Query: 1370 tttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||||| || || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 564812 tttgacggtgtaacctcaatgatgtacactcatcatggattacaagt 564766
Score = 71.9 bits (36), Expect = 2e-009
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgc 633
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 568439 tctgcagcattagtaggtgacttcaacaattggaatccaaatgc 568396
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 567280 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 567221
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 567220 gaatgagtagc 567210
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||| ||||||||||||| ||| ||| ||||||||||| |||| || |||
Sbjct: 561671 gaatggattgattttccaagagctccacaagtacttccaaatggtaaattcatcccaggg 561612
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgacct 2040
|||||||| || | |||||||||||| || |||||||||||
Sbjct: 561611 aataacaacagttatgataaatgccgtcgaagatttgacct 561571
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 569688 agaaaccacgagttgtcccaccaacaggagatgg 569655
Score = 48.1 bits (24), Expect = 0.026
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||| ||||| ||||| ||||| || |||| || | ||||||||||| ||||||
Sbjct: 566251 ccaagtagtcgtttcgggaccccagaagatttaaagtcattgattgataaagctcatgag 566192
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| || | ||||| |||||| |||||||
Sbjct: 566191 cttggtttagttgtgctcatggatgttgttca 566160
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgacc 2087
||||| || |||||||| |||||||| |||| |||||||||||
Sbjct: 561332 gatgcggactatcttaggtatcgtggcatgctagagtttgacc 561290
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 155 bits (78), Expect = 2e-034
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||||||||| || |||| ||| |||| |||||||| |
Sbjct: 5747902 aggatatgtatgattttatggctctggacagaccggcaacacctagcattgatcgtggaa 5747843
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
Sbjct: 5747842 tagcattgcataaaatgattagacttatcacaatggggttaggaggagaaggctatctta 5747783
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
| || |||||||||||||| || |||||||
Sbjct: 5747782 actttatgggaaatgagttcggacatcctg 5747753
Score = 129 bits (65), Expect = 9e-027
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1181 tcaaataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccat 1240
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 5751038 tcaaataataccctagatgggttgaacggttttgatggtacagatacgcattactttcat 5750979
Query: 1241 ggtggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgg 1300
||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 5750978 agtggttcacgcggccatcattggatgtgggattctcgccttttcaactatgggaattgg 5750919
Query: 1301 gaagt 1305
|||||
Sbjct: 5750918 gaagt 5750914
Score = 113 bits (57), Expect = 5e-022
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 935 ccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaagctt 994
|||||||| || || ||||| ||||| || |||||||||||||||||||| |||||||||
Sbjct: 5752660 ccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaatcaaaaagctt 5752601
Query: 995 ggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttggg 1054
|||||||||||||| || ||||||||||| || || || | ||||||| ||||||||||
Sbjct: 5752600 ggatacaatgcagtgcaaataatggcaattcaagagcatgcatattatggaagctttggg 5752541
Query: 1055 t 1055
|
Sbjct: 5752540 t 5752540
Score = 107 bits (54), Expect = 3e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
||||| ||||||||||||||| | ||||| ||||||||||| |||||||||||||||
Sbjct: 5749088 gtcagtggaatgcctacatttgcccttcctgttcaagatggtggggttggttttgattat 5749029
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
|| |||||||||||||| || |||||||||||||||||
Sbjct: 5749028 cgccttcatatggctgttcctgacaaatggattgaact 5748991
Score = 107 bits (54), Expect = 3e-020
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||| |||| |||| | |||||||| || |||||||| | || || ||||||||
Sbjct: 5748499 gcaaagtgatgaatcttggaagatgggtgatattgtgcacacactgactaacagaaggtg 5748440
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| |||||||||||||||||| || ||||||||||| ||
Sbjct: 5748439 gtcagagaagtgtgttacttatgctgaaagtcatgatcaagcactagttggtgacaaaac 5748380
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||| ||||
Sbjct: 5748379 tattgcattctggttgatggacaagg 5748354
Score = 103 bits (52), Expect = 5e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||| | |||||||| ||||||||||||||||||| |||||||||
Sbjct: 5753987 atggaaactccatctggtataaaggattctattcctgcctggatcaagtactctgtgcag 5753928
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagagg 848
|| |||| ||||| |||||||| || ||||||||||| || ||||||||||
Sbjct: 5753927 gccgcaggagaaatcccatacaatggaatatattatgatcctcctgaagagg 5753876
Score = 103 bits (52), Expect = 5e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 2153 aagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaac 2212
|||||||| ||||||||| |||| || ||||||| |||||| |||| || |||||||||
Sbjct: 5746664 aagcatgaagaggataagatgattatatttgagaagggagatctggtatttgtgttcaac 5746605
Query: 2213 ttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaa 2268
||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 5746604 ttccattggagtaacagctattttgactaccgtgttggttgtttaaagccagggaa 5746549
Score = 89.7 bits (45), Expect = 8e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 5754146 gtttgggagatttttctgcctaacaatgctgatggctcatctcctattccacatggctca 5754087
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 5754086 cgtgtaaag 5754078
Score = 83.8 bits (42), Expect = 5e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1445 tttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttatt 1504
||||||||||||||||||| |||||||||||||||| | ||||||||||| ||| | |||
Sbjct: 5750537 tttggatttgccactgatgctgatgcagtagtttacttgatgctggtaaatgatttaatt 5750478
Query: 1505 cgtgggctttatcc 1518
| ||| ||||||||
Sbjct: 5750477 catggactttatcc 5750464
Score = 77.8 bits (39), Expect = 3e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1310 agatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcga 1369
||||||||| | || ||||| ||||||||||| || || ||||| |||||||| || ||
Sbjct: 5750812 agatttctactatccaatgcaagatggtggctcgaggagtataagtttgatggtttcaga 5750753
Query: 1370 tttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||||| || || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 5750752 tttgacggtgtaacctcaatgatgtacactcatcatggattacaagt 5750706
Score = 71.9 bits (36), Expect = 2e-009
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgc 633
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 5754833 tctgcagcattagtaggtgacttcaacaattggaatccaaatgc 5754790
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 5753220 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 5753161
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 5753160 gaatgagtagc 5753150
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||| ||||||||||||| ||| ||| ||||||||||| |||| || |||
Sbjct: 5747612 gaatggattgattttccaagagctccacaagtacttccaaatggtaaattcatcccaggg 5747553
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgacct 2040
|||||||| || | |||||||||||| || |||||||||||
Sbjct: 5747552 aataacaacagttatgataaatgccgtcgaagatttgacct 5747512
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 5756082 agaaaccacgagttgtcccaccaacaggagatgg 5756049
Score = 48.1 bits (24), Expect = 0.026
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||| ||||| ||||| ||||| || |||| || | ||||||||||| ||||||
Sbjct: 5752191 ccaagtagtcgtttcgggaccccagaagatttaaagtcattgattgataaagctcatgag 5752132
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| || | ||||| |||||| |||||||
Sbjct: 5752131 cttggtttagttgtgctcatggatgttgttca 5752100
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgacc 2087
||||| || |||||||| |||||||| |||| |||||||||||
Sbjct: 5747273 gatgcggactatcttaggtatcgtggcatgctagagtttgacc 5747231
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 155 bits (78), Expect = 2e-034
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||||||||| || |||| ||| |||| |||||||| |
Sbjct: 19200966 aggatatgtatgattttatggctctggacagaccggcaacacctagcattgatcgtggaa 19200907
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
Sbjct: 19200906 tagcattgcataaaatgattagacttatcacaatggggttaggaggagaaggctatctta 19200847
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
| || |||||||||||||| || |||||||
Sbjct: 19200846 actttatgggaaatgagttcggacatcctg 19200817
Score = 129 bits (65), Expect = 9e-027
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1181 tcaaataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccat 1240
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 19204102 tcaaataataccctagatgggttgaacggttttgatggtacagatacgcattactttcat 19204043
Query: 1241 ggtggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgg 1300
||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 19204042 agtggttcacgcggccatcattggatgtgggattctcgccttttcaactatgggaattgg 19203983
Query: 1301 gaagt 1305
|||||
Sbjct: 19203982 gaagt 19203978
Score = 113 bits (57), Expect = 5e-022
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 935 ccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaagctt 994
|||||||| || || ||||| ||||| || |||||||||||||||||||| |||||||||
Sbjct: 19205724 ccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaatcaaaaagctt 19205665
Query: 995 ggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttggg 1054
|||||||||||||| || ||||||||||| || || || | ||||||| ||||||||||
Sbjct: 19205664 ggatacaatgcagtgcaaataatggcaattcaagagcatgcatattatggaagctttggg 19205605
Query: 1055 t 1055
|
Sbjct: 19205604 t 19205604
Score = 107 bits (54), Expect = 3e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
||||| ||||||||||||||| | ||||| ||||||||||| |||||||||||||||
Sbjct: 19202152 gtcagtggaatgcctacatttgcccttcctgttcaagatggtggggttggttttgattat 19202093
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
|| |||||||||||||| || |||||||||||||||||
Sbjct: 19202092 cgccttcatatggctgttcctgacaaatggattgaact 19202055
Score = 107 bits (54), Expect = 3e-020
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||| |||| |||| | |||||||| || |||||||| | || || ||||||||
Sbjct: 19201563 gcaaagtgatgaatcttggaagatgggtgatattgtgcacacactgactaacagaaggtg 19201504
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| |||||||||||||||||| || ||||||||||| ||
Sbjct: 19201503 gtcagagaagtgtgttacttatgctgaaagtcatgatcaagcactagttggtgacaaaac 19201444
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||| ||||
Sbjct: 19201443 tattgcattctggttgatggacaagg 19201418
Score = 103 bits (52), Expect = 5e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||| | |||||||| ||||||||||||||||||| |||||||||
Sbjct: 19207051 atggaaactccatctggtataaaggattctattcctgcctggatcaagtactctgtgcag 19206992
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagagg 848
|| |||| ||||| |||||||| || ||||||||||| || ||||||||||
Sbjct: 19206991 gccgcaggagaaatcccatacaatggaatatattatgatcctcctgaagagg 19206940
Score = 103 bits (52), Expect = 5e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 2153 aagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaac 2212
|||||||| ||||||||| |||| || ||||||| |||||| |||| || |||||||||
Sbjct: 19199728 aagcatgaagaggataagatgattatatttgagaagggagatctggtatttgtgttcaac 19199669
Query: 2213 ttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaa 2268
||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 19199668 ttccattggagtaacagctattttgactaccgtgttggttgtttaaagccagggaa 19199613
Score = 89.7 bits (45), Expect = 8e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 19207210 gtttgggagatttttctgcctaacaatgctgatggctcatctcctattccacatggctca 19207151
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 19207150 cgtgtaaag 19207142
Score = 83.8 bits (42), Expect = 5e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1445 tttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttatt 1504
||||||||||||||||||| |||||||||||||||| | ||||||||||| ||| | |||
Sbjct: 19203601 tttggatttgccactgatgctgatgcagtagtttacttgatgctggtaaatgatttaatt 19203542
Query: 1505 cgtgggctttatcc 1518
| ||| ||||||||
Sbjct: 19203541 catggactttatcc 19203528
Score = 77.8 bits (39), Expect = 3e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1310 agatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcga 1369
||||||||| | || ||||| ||||||||||| || || ||||| |||||||| || ||
Sbjct: 19203876 agatttctactatccaatgcaagatggtggctcgaggagtataagtttgatggtttcaga 19203817
Query: 1370 tttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||||| || || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 19203816 tttgacggtgtaacctcaatgatgtacactcatcatggattacaagt 19203770
Score = 71.9 bits (36), Expect = 2e-009
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgc 633
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 19207897 tctgcagcattagtaggtgacttcaacaattggaatccaaatgc 19207854
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 19206284 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 19206225
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 19206224 gaatgagtagc 19206214
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||| ||||||||||||| ||| ||| ||||||||||| |||| || |||
Sbjct: 19200676 gaatggattgattttccaagagctccacaagtacttccaaatggtaaattcatcccaggg 19200617
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgacct 2040
|||||||| || | |||||||||||| || |||||||||||
Sbjct: 19200616 aataacaacagttatgataaatgccgtcgaagatttgacct 19200576
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 19209146 agaaaccacgagttgtcccaccaacaggagatgg 19209113
Score = 48.1 bits (24), Expect = 0.026
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||| ||||| ||||| ||||| || |||| || | ||||||||||| ||||||
Sbjct: 19205255 ccaagtagtcgtttcgggaccccagaagatttaaagtcattgattgataaagctcatgag 19205196
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| || | ||||| |||||| |||||||
Sbjct: 19205195 cttggtttagttgtgctcatggatgttgttca 19205164
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgacc 2087
||||| || |||||||| |||||||| |||| |||||||||||
Sbjct: 19200337 gatgcggactatcttaggtatcgtggcatgctagagtttgacc 19200295
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 155 bits (78), Expect = 2e-034
Identities = 132/150 (88%)
Strand = Plus / Minus
Query: 1791 aggatatgtatgatttcatggctctggacaggccttcaacgcctcgcatcgatcgtggga 1850
|||||||||||||||| |||||||||||||| || |||| ||| |||| |||||||| |
Sbjct: 19377719 aggatatgtatgattttatggctctggacagaccggcaacacctagcattgatcgtggaa 19377660
Query: 1851 tagcattacataaaatgattaggcttgtcacaatgggtttaggaggtgaaggctatctaa 1910
||||||| |||||||||||||| ||| |||||||||| |||||||| ||||||||||| |
Sbjct: 19377659 tagcattgcataaaatgattagacttatcacaatggggttaggaggagaaggctatctta 19377600
Query: 1911 atttcatgggaaatgagtttgggcatcctg 1940
| || |||||||||||||| || |||||||
Sbjct: 19377599 actttatgggaaatgagttcggacatcctg 19377570
Score = 129 bits (65), Expect = 9e-027
Identities = 110/125 (88%)
Strand = Plus / Minus
Query: 1181 tcaaataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccat 1240
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 19380856 tcaaataataccctagatgggttgaacggttttgatggtacagatacgcattactttcat 19380797
Query: 1241 ggtggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgg 1300
||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 19380796 agtggttcacgcggccatcattggatgtgggattctcgccttttcaactatgggaattgg 19380737
Query: 1301 gaagt 1305
|||||
Sbjct: 19380736 gaagt 19380732
Score = 113 bits (57), Expect = 5e-022
Identities = 105/121 (86%)
Strand = Plus / Minus
Query: 935 ccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaattaaaaagctt 994
|||||||| || || ||||| ||||| || |||||||||||||||||||| |||||||||
Sbjct: 19382478 ccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaatcaaaaagctt 19382419
Query: 995 ggatacaatgcagtacagataatggcaatccaggaacactcttattatgcaagctttggg 1054
|||||||||||||| || ||||||||||| || || || | ||||||| ||||||||||
Sbjct: 19382418 ggatacaatgcagtgcaaataatggcaattcaagagcatgcatattatggaagctttggg 19382359
Query: 1055 t 1055
|
Sbjct: 19382358 t 19382358
Score = 107 bits (54), Expect = 3e-020
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 1544 gtcagcggaatgcctacattttgtatccctgtccaagatggtggtgttggttttgattat 1603
||||| ||||||||||||||| | ||||| ||||||||||| |||||||||||||||
Sbjct: 19378906 gtcagtggaatgcctacatttgcccttcctgttcaagatggtggggttggttttgattat 19378847
Query: 1604 cgtcttcatatggctgtcccagacaaatggattgaact 1641
|| |||||||||||||| || |||||||||||||||||
Sbjct: 19378846 cgccttcatatggctgttcctgacaaatggattgaact 19378809
Score = 107 bits (54), Expect = 3e-020
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1648 gcaaagtgacgaatattgggaaatgggtgacatcgtgcacaccttaacaaatagaaggtg 1707
||||||||| |||| |||| | |||||||| || |||||||| | || || ||||||||
Sbjct: 19378316 gcaaagtgatgaatcttggaagatgggtgatattgtgcacacactgactaacagaaggtg 19378257
Query: 1708 gcttgaaaagtgtgtcacttattgtgaaagtcatgatcaagctcttgttggtgacaagac 1767
| || |||||||| |||||| |||||||||||||||||| || ||||||||||| ||
Sbjct: 19378256 gtcagagaagtgtgttacttatgctgaaagtcatgatcaagcactagttggtgacaaaac 19378197
Query: 1768 aattgcattctggttgatggataagg 1793
|||||||||||||||||||| ||||
Sbjct: 19378196 tattgcattctggttgatggacaagg 19378171
Score = 103 bits (52), Expect = 5e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||| | |||||||| ||||||||||||||||||| |||||||||
Sbjct: 19383351 atggaaactccatctggtataaaggattctattcctgcctggatcaagtactctgtgcag 19383292
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagagg 848
|| |||| ||||| |||||||| || ||||||||||| || ||||||||||
Sbjct: 19383291 gccgcaggagaaatcccatacaatggaatatattatgatcctcctgaagagg 19383240
Score = 103 bits (52), Expect = 5e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 2153 aagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaac 2212
|||||||| ||||||||| |||| || ||||||| |||||| |||| || |||||||||
Sbjct: 19376481 aagcatgaagaggataagatgattatatttgagaagggagatctggtatttgtgttcaac 19376422
Query: 2213 ttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaa 2268
||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 19376421 ttccattggagtaacagctattttgactaccgtgttggttgtttaaagccagggaa 19376366
Score = 89.7 bits (45), Expect = 8e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 19383510 gtttgggagatttttctgcctaacaatgctgatggctcatctcctattccacatggctca 19383451
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 19383450 cgtgtaaag 19383442
Score = 83.8 bits (42), Expect = 5e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1445 tttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttatt 1504
||||||||||||||||||| |||||||||||||||| | ||||||||||| ||| | |||
Sbjct: 19380355 tttggatttgccactgatgctgatgcagtagtttacttgatgctggtaaatgatttaatt 19380296
Query: 1505 cgtgggctttatcc 1518
| ||| ||||||||
Sbjct: 19380295 catggactttatcc 19380282
Score = 77.8 bits (39), Expect = 3e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1310 agatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcga 1369
||||||||| | || ||||| ||||||||||| || || ||||| |||||||| || ||
Sbjct: 19380630 agatttctactatccaatgcaagatggtggctcgaggagtataagtttgatggtttcaga 19380571
Query: 1370 tttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||||| || || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 19380570 tttgacggtgtaacctcaatgatgtacactcatcatggattacaagt 19380524
Score = 71.9 bits (36), Expect = 2e-009
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgc 633
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 19384197 tctgcagcattagtaggtgacttcaacaattggaatccaaatgc 19384154
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 19383038 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 19382979
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 19382978 gaatgagtagc 19382968
Score = 58.0 bits (29), Expect = 3e-005
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||| ||||||||||||| ||| ||| ||||||||||| |||| || |||
Sbjct: 19377429 gaatggattgattttccaagagctccacaagtacttccaaatggtaaattcatcccaggg 19377370
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgacct 2040
|||||||| || | |||||||||||| || |||||||||||
Sbjct: 19377369 aataacaacagttatgataaatgccgtcgaagatttgacct 19377329
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 19385446 agaaaccacgagttgtcccaccaacaggagatgg 19385413
Score = 48.1 bits (24), Expect = 0.026
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1079 ccaagtagccgttttgggactccagaggacctaaaatctcttattgataaagcgcatgag 1138
|||||||| ||||| ||||| ||||| || |||| || | ||||||||||| ||||||
Sbjct: 19382009 ccaagtagtcgtttcgggaccccagaagatttaaagtcattgattgataaagctcatgag 19381950
Query: 1139 cttggcttgctagtgcttatggatattgttca 1170
||||| || | ||||| |||||| |||||||
Sbjct: 19381949 cttggtttagttgtgctcatggatgttgttca 19381918
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgacc 2087
||||| || |||||||| |||||||| |||| |||||||||||
Sbjct: 19377090 gatgcggactatcttaggtatcgtggcatgctagagtttgacc 19377048
>gb|AQ690523.1|AQ690523 nbxb0082O11f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0082O11f, DNA sequence
Length = 465
Score = 139 bits (70), Expect = 9e-030
Identities = 106/118 (89%)
Strand = Plus / Minus
Query: 1823 ccttcaacgcctcgcatcgatcgtgggatagcattacataaaatgattaggcttgtcaca 1882
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ccttcaacacctcgcattgatcgtgggatagcattacataaaatgattaggcttgtcacc 401
Query: 1883 atgggtttaggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctg 1940
||||| |||| || |||| |||||| |||||||||| |||| ||| |||||||||||
Sbjct: 400 atgggcttagcagccgaagcctatcttaatttcatggcaaatcagtctgggcatcctg 343
Score = 101 bits (51), Expect = 2e-018
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 1940 gaatggatagattttccaagaggtcctcaaagtcttccaaatggctccgtcattcctggg 1999
|||||||||||||| |||||||| || |||||||||||||||||||| ||| | || ||
Sbjct: 214 gaatggatagatttcccaagaggcccgcaaagtcttccaaatggctcggtcctcccagga 155
Query: 2000 aataacaatagctttgataaatgccgccgtagatttgaccttg 2042
|| ||| | || |||||||||||||| ||||||||||||||||
Sbjct: 154 aacaactacagttttgataaatgccgtcgtagatttgaccttg 112
>gb|AQ856076.1|AQ856076 nbeb0001A02r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0001A02r, DNA sequence
Length = 479
Score = 129 bits (65), Expect = 9e-027
Identities = 110/125 (88%)
Strand = Plus / Plus
Query: 1181 tcaaataataccttggatggtttgaatggtttcgatggcaccgatacacattacttccat 1240
|||||||||||| | ||||| ||||| ||||| ||||| || ||||| |||||||| |||
Sbjct: 301 tcaaataataccctagatgggttgaacggttttgatggtacagatacgcattactttcat 360
Query: 1241 ggtggtccacgaggccatcattggatgtgggattctcgcctattcaattatgggagttgg 1300
||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct: 361 agtggttcacgcggccatcattggatgtgggattctcgccttttcaactatgggaattgg 420
Query: 1301 gaagt 1305
|||||
Sbjct: 421 gaagt 425
>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0458B05
Length = 144917
Score = 103 bits (52), Expect = 5e-019
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 2153 aagcatgaggaggataaggtgatcatctttgagagaggagatttggtcttcgtgttcaac 2212
|||||||| ||||||||| |||| || ||||||| |||||| |||| || |||||||||
Sbjct: 144279 aagcatgaagaggataagatgattatatttgagaagggagatctggtatttgtgttcaac 144220
Query: 2213 ttccactggagcaatagctattttgactatcgcgttggttgtttcaagcctgggaa 2268
||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||
Sbjct: 144219 ttccattggagtaacagctattttgactaccgtgttggttgtttaaagccagggaa 144164
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 2045 gatgcagattatcttagatatcgtggtatgcaagagtttgacc 2087
||||| || |||||||| |||||||| |||| |||||||||||
Sbjct: 144888 gatgcggactatcttaggtatcgtggcatgctagagtttgacc 144846
>gb|AACV01004554.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004554, whole
genome shotgun sequence
Length = 5362
Score = 103 bits (52), Expect = 5e-019
Identities = 97/112 (86%)
Strand = Plus / Plus
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||| | |||||||| ||||||||||||||||||| |||||||||
Sbjct: 5229 atggaaactccatctggtataaaggattctattcctgcctggatcaagtactctgtgcag 5288
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagagg 848
|| |||| ||||| |||||||| || ||||||||||| || ||||||||||
Sbjct: 5289 gccgcaggagaaatcccatacaatggaatatattatgatcctcctgaagagg 5340
Score = 89.7 bits (45), Expect = 8e-015
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 5070 gtttgggagatttttctgcctaacaatgctgatggctcatctcctattccacatggctca 5129
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 5130 cgtgtaaag 5138
Score = 71.9 bits (36), Expect = 2e-009
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgc 633
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 4383 tctgcagcattagtaggtgacttcaacaattggaatccaaatgc 4426
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 3134 agaaaccacgagttgtcccaccaacaggagatgg 3167
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
PAC clone:P0476H10
Length = 151703
Score = 103 bits (52), Expect = 5e-019
Identities = 97/112 (86%)
Strand = Plus / Minus
Query: 737 atggacacaccatctggtgttaaggattccattcctgcctggatcaagttttctgtgcag 796
||||| || ||||||||| | |||||||| ||||||||||||||||||| |||||||||
Sbjct: 878 atggaaactccatctggtataaaggattctattcctgcctggatcaagtactctgtgcag 819
Query: 797 gctccaggtgaaataccatacaacggtatatattatgacccacctgaagagg 848
|| |||| ||||| |||||||| || ||||||||||| || ||||||||||
Sbjct: 818 gccgcaggagaaatcccatacaatggaatatattatgatcctcctgaagagg 767
Score = 89.7 bits (45), Expect = 8e-015
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 662 gtttgggagattttcctgcctaacaatgctgatggttcccctgctattcctcatggctca 721
|||||||||||||| |||||||||||||||||||| || || ||||||| |||||||||
Sbjct: 1037 gtttgggagatttttctgcctaacaatgctgatggctcatctcctattccacatggctca 978
Query: 722 cgtgtaaag 730
|||||||||
Sbjct: 977 cgtgtaaag 969
Score = 71.9 bits (36), Expect = 2e-009
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgc 633
||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1724 tctgcagcattagtaggtgacttcaacaattggaatccaaatgc 1681
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 565 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 506
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 505 gaatgagtagc 495
Score = 52.0 bits (26), Expect = 0.002
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 354 agaaaccacgagttatcccaccaccaggagatgg 387
|||||||||||||| |||||||| ||||||||||
Sbjct: 2973 agaaaccacgagttgtcccaccaacaggagatgg 2940
>gb|AQ864199.1|AQ864199 nbeb0022L19r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0022L19r, DNA sequence
Length = 806
Score = 87.7 bits (44), Expect = 3e-014
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 590 tctgcagcattagtaggtgacttcaacaactggaacccaaatgctgatgctatggccaga 649
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||
Sbjct: 346 tctgcagcattagtaggtgacttcaacaattggaacccaaatgcagatactatgaccaga 287
Score = 46.1 bits (23), Expect = 0.10
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 544 cagcgctgaaggtatcacttacagagaatgggctcctggagca 586
|||||||||||| || || ||| |||||||||| |||||||||
Sbjct: 531 cagcgctgaaggcattacctaccgagaatgggcacctggagca 489
>gb|CV733708.1|CV733708 FLO--08-L22.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--08-L22,
mRNA sequence
Length = 174
Score = 85.7 bits (43), Expect = 1e-013
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 1997 gggaataacaatagctttgataaatgccgccgtagatttgaccttggagatgcagattat 2056
||||||||||| || | |||||||||||| || ||||||||||| || ||||| || |||
Sbjct: 47 gggaataacaacagttatgataaatgccgtcgaagatttgacctgggtgatgcggactat 106
Query: 2057 cttagatatcgtggtatgcaagagtttgacc 2087
||||| |||||||| |||| |||||||||||
Sbjct: 107 cttaggtatcgtggcatgctagagtttgacc 137
>gb|AQ576669.1|AQ576669 nbxb0089J01r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0089J01r, DNA sequence
Length = 610
Score = 83.8 bits (42), Expect = 5e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1445 tttggatttgccactgatgttgatgcagtagtttacctaatgctggtaaacgatcttatt 1504
||||||||||||||||||| |||||||||||||||| | ||||||||||| ||| | |||
Sbjct: 195 tttggatttgccactgatgctgatgcagtagtttacttgatgctggtaaatgatttaatt 136
Query: 1505 cgtgggctttatcc 1518
| ||| ||||||||
Sbjct: 135 catggactttatcc 122
Score = 77.8 bits (39), Expect = 3e-011
Identities = 90/107 (84%)
Strand = Plus / Minus
Query: 1310 agatttctattgtcaaatgcgagatggtggcttgaagaatataaatttgatgggtttcga 1369
||||||||| | || ||||| ||||||||||| || || ||||| |||||||| || ||
Sbjct: 470 agatttctactatccaatgcaagatggtggctcgaggagtataagtttgatggtttcaga 411
Query: 1370 tttgatggggtgacctccatgatgtatactcaccatggattacaagt 1416
||||| || || ||||| |||||||| ||||| ||||||||||||||
Sbjct: 410 tttgacggtgtaacctcaatgatgtacactcatcatggattacaagt 364
Score = 44.1 bits (22), Expect = 0.40
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1267 gtgggattctcgcctattcaattatgggagttgg 1300
||||||||||||||| ||||| ||||||| ||||
Sbjct: 610 gtgggattctcgccttttcaactatgggaattgg 577
>gb|C99341.1|C99341 C99341 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10727_7A, mRNA sequence
Length = 582
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 184 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 243
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 244 tttccaagag 253
>gb|CB668586.1|CB668586 OSJNEd16I04.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16I04 5', mRNA sequence
Length = 810
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 634 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 693
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 694 tttccaagag 703
>gb|CB668587.1|CB668587 OSJNEd16I04.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16I04 3', mRNA sequence
Length = 862
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 208 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 149
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 148 tttccaagag 139
>gb|CF328664.1|CF328664 NACL--03-K20.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--03-K20, mRNA
sequence
Length = 569
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 331 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 390
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 391 tttccaagag 400
>gb|CF328834.1|CF328834 NACL--03-O21.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--03-O21, mRNA
sequence
Length = 565
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 331 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 390
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 391 tttccaagag 400
>gb|CF330102.1|CF330102 NACL--05-K23.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--05-K23, mRNA
sequence
Length = 596
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 331 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 390
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 391 tttccaagag 400
>gb|CF331462.1|CF331462 NACL--07-J14.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--07-J14, mRNA
sequence
Length = 637
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 321 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 380
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 381 tttccaagag 390
>gb|AF136268.1|AF136268 Oryza sativa subsp. japonica starch-branching enzyme I (Rbe1) mRNA,
complete cds
Length = 2768
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 1787 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 1846
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 1847 tttccaagag 1856
>dbj|D11082.1|RICBE1 Oryza sativa (japonica cultivar-group) mRNA for branching enzyme-I,
complete cds
Length = 2739
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 1766 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 1825
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 1826 tttccaagag 1835
>dbj|D10752.1|RICBE Oryza sativa (japonica cultivar-group) mRNA for branching enzyme,
complete cds
Length = 2740
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 1776 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 1835
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 1836 tttccaagag 1845
>gb|AY302112.1| Oryza sativa (japonica cultivar-group) starch-branching enzyme 1
(Sbe1) mRNA, complete cds
Length = 2490
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 1749 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 1808
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 1809 tttccaagag 1818
>dbj|AK065121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O19, full
insert sequence
Length = 2729
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 1708 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 1767
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 1768 tttccaagag 1777
>dbj|AK068920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170H02, full
insert sequence
Length = 3827
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 2863 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 2922
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 2923 tttccaagag 2932
>dbj|AK119436.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-B02, full
insert sequence
Length = 3554
Score = 67.9 bits (34), Expect = 3e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 1864 ggaggtgatggctacttaaattttatgggcaatgagtttggccatccagaatggattgac 1923
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 1924 tttccaagag 1933
>gb|AQ271974.1|AQ271974 nbxb0027E13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027E13r, DNA sequence
Length = 720
Score = 61.9 bits (31), Expect = 2e-006
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 858 tattcaaacaccctcaacctaagcggcccaagtcactgcggatatatgaatcacatgttg 917
||||||| || ||||||||||| | || |||||| |||||||||| ||| | |||||||
Sbjct: 614 tattcaagcatcctcaacctaaaagaccaaagtcattgcggatatacgaaactcatgttg 555
Query: 918 gaatgagtagc 928
|||||||||||
Sbjct: 554 gaatgagtagc 544
Score = 52.0 bits (26), Expect = 0.002
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 935 ccaaagataaatacatatgctaacttcagagatgaggtgcttccaagaat 984
|||||||| || || ||||| ||||| || ||||||||||||||||||||
Sbjct: 54 ccaaagatcaacacgtatgcaaactttagggatgaggtgcttccaagaat 5
>gb|CF196291.1|CF196291 Azvi2.1_B03 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.1B03 5', mRNA sequence
Length = 550
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 6 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 59
>gb|CF196311.1|CF196311 Azvi2.1_D03 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.1D03 5', mRNA sequence
Length = 430
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 6 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 59
>gb|CF196373.1|CF196373 Azvi2.2_B11 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2B11 5', mRNA sequence
Length = 480
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 6 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 59
>gb|CF196390.1|CF196390 Azvi2.2_D07 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2D07 5', mRNA sequence
Length = 389
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 6 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 59
>gb|CF196400.1|CF196400 Azvi2.2_E07 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2E07 5', mRNA sequence
Length = 289
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 6 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 59
>gb|CF196410.1|CF196410 Azvi2.2_F07 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2F07 5', mRNA sequence
Length = 360
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 6 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 59
>gb|CF196422.1|CF196422 Azvi2.2_G10 AZ-VI Oryza sativa (japonica cultivar-group) cDNA clone
AZ-VI2.2G10 5', mRNA sequence
Length = 369
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 6 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 59
>gb|CF326784.1|CF326784 NACL--01-A02.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--01-A02, mRNA
sequence
Length = 596
Score = 60.0 bits (30), Expect = 7e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 1892 ggaggtgaaggctatctaaatttcatgggaaatgagtttgggcatcctgaatggatagat 1951
|||||||| ||||| ||||||| ||||| ||||||||||| |||| |||||||| ||
Sbjct: 331 ggaggtgatggctacttaaattttatgggcaatgagtttggctatccagaatggattgac 390
Query: 1952 tttccaagag 1961
||||||||||
Sbjct: 391 tttccaagag 400
>gb|CF329597.1|CF329597 NACL--04-P17.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--04-P17, mRNA
sequence
Length = 590
Score = 60.0 bits (30), Expect = 7e-006
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 1908 taaatttcatgggaaatgagtttgggcatcctgaatggatagattttccaagag 1961
||||||| ||||| ||||||||||| ||||| |||||||| || ||||||||||
Sbjct: 347 taaattttatgggcaatgagtttggccatccagaatggattgactttccaagag 400
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,695,181
Number of Sequences: 438736
Number of extensions: 3695181
Number of successful extensions: 5841
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5472
Number of HSP's gapped (non-prelim): 350
length of query: 2756
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 2734
effective length of database: 2,790,767,724
effective search space: 7629958957416
effective search space used: 7629958957416
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)