BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591368.2.1
(543 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_473608.1| Oryza sativa (japonica cultivar-group), p... 230 6e-058
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 230 6e-058
emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromoso... 230 6e-058
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 230 6e-058
dbj|AK064250.1| Oryza sativa (japonica cultivar-group) cDNA... 222 2e-055
gb|AACV01010356.1| Oryza sativa (japonica cultivar-group) c... 208 2e-051
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 208 2e-051
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 208 2e-051
dbj|AK071011.1| Oryza sativa (japonica cultivar-group) cDNA... 74 9e-011
gb|AACV01007841.1| Oryza sativa (japonica cultivar-group) c... 74 9e-011
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 74 9e-011
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 74 9e-011
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
gb|AC135956.6| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
gb|AACV01011739.1| Oryza sativa (japonica cultivar-group) c... 54 8e-005
gb|AC134344.2| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|AC136224.2| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 54 8e-005
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 54 8e-005
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 54 8e-005
dbj|AK106489.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.077
gb|AACV01013541.1| Oryza sativa (japonica cultivar-group) c... 44 0.077
dbj|AP005813.1| Oryza sativa (japonica cultivar-group) geno... 44 0.077
ref|NM_185777.1| Oryza sativa (japonica cultivar-group), p... 44 0.077
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 44 0.077
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.077
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.077
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.077
>ref|XM_473608.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1452
Score = 230 bits (116), Expect = 6e-058
Identities = 179/200 (89%)
Strand = Plus / Minus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 1366 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 1307
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 1306 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 1247
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccgg 521
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 1246 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgtgccgg 1187
Query: 522 gcgacacgttgagcttcacc 541
|||||||||| |||||||||
Sbjct: 1186 gcgacacgttcagcttcacc 1167
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 1436 accatcggggactgcggcgacaggagcgccaa 1405
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 230 bits (116), Expect = 6e-058
Identities = 179/200 (89%)
Strand = Plus / Plus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 2882340 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 2882399
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 2882400 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 2882459
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccgg 521
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 2882460 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgtgccgg 2882519
Query: 522 gcgacacgttgagcttcacc 541
|||||||||| |||||||||
Sbjct: 2882520 gcgacacgttcagcttcacc 2882539
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 2882270 accatcggggactgcggcgacaggagcgccaa 2882301
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
complete sequence
Length = 157734
Score = 230 bits (116), Expect = 6e-058
Identities = 179/200 (89%)
Strand = Plus / Plus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 15058 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 15117
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 15118 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 15177
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccgg 521
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 15178 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgtgccgg 15237
Query: 522 gcgacacgttgagcttcacc 541
|||||||||| |||||||||
Sbjct: 15238 gcgacacgttcagcttcacc 15257
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 14988 accatcggggactgcggcgacaggagcgccaa 15019
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 230 bits (116), Expect = 6e-058
Identities = 179/200 (89%)
Strand = Plus / Plus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 29105592 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 29105651
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 29105652 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 29105711
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccgg 521
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 29105712 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgtgccgg 29105771
Query: 522 gcgacacgttgagcttcacc 541
|||||||||| |||||||||
Sbjct: 29105772 gcgacacgttcagcttcacc 29105791
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 29105522 accatcggggactgcggcgacaggagcgccaa 29105553
>dbj|AK064250.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C04, full
insert sequence
Length = 2114
Score = 222 bits (112), Expect = 2e-055
Identities = 175/196 (89%)
Strand = Plus / Minus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 1584 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 1525
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 1524 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 1465
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccgg 521
|||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 1464 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgtgccgg 1405
Query: 522 gcgacacgttgagctt 537
|||||||||| |||||
Sbjct: 1404 gcgacacgttcagctt 1389
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 1654 accatcggggactgcggcgacaggagcgccaa 1623
>gb|AACV01010356.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010356, whole
genome shotgun sequence
Length = 15868
Score = 208 bits (105), Expect = 2e-051
Identities = 178/201 (88%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 10534 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 10475
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 10474 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 10415
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg-tgccg 520
|||||||||||| ||||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct: 10414 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgttcccg 10355
Query: 521 ggcgacacgttgagcttcacc 541
||||||||||| |||||||||
Sbjct: 10354 ggcgacacgttcagcttcacc 10334
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 10604 accatcggggactgcggcgacaggagcgccaa 10573
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 208 bits (105), Expect = 2e-051
Identities = 178/201 (88%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 6897537 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 6897596
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 6897597 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 6897656
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg-tgccg 520
|||||||||||| ||||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct: 6897657 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgttcccg 6897716
Query: 521 ggcgacacgttgagcttcacc 541
||||||||||| |||||||||
Sbjct: 6897717 ggcgacacgttcagcttcacc 6897737
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 6897467 accatcggggactgcggcgacaggagcgccaa 6897498
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 208 bits (105), Expect = 2e-051
Identities = 178/201 (88%), Gaps = 1/201 (0%)
Strand = Plus / Plus
Query: 342 gcggcaagctgaggcggaggggccgcgtggccgcccagcgctcggccttggccttgctgt 401
|||||| |||||||||||| ||| |||| |||||||||||||||||| || ||| |
Sbjct: 26041636 gcggcaggctgaggcggagctgcctattggcggcccagcgctcggccttgaccctgcgct 26041695
Query: 402 gctggtgctggcgcacgaagcggcggatccggtcgagcgcgacctccatggtgtcgtcgt 461
|||||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||
Sbjct: 26041696 gctggtgctggcgcacgaagtcgtggatccggccgagcgcgacctccatggtctcgtcgt 26041755
Query: 462 ccatgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg-tgccg 520
|||||||||||| ||||||||||||||| ||||||||| |||||||||||||| | |||
Sbjct: 26041756 ccatgttggcgtggcagacgcggaaccacccgggctcgcggcagtggaacgacgttcccg 26041815
Query: 521 ggcgacacgttgagcttcacc 541
||||||||||| |||||||||
Sbjct: 26041816 ggcgacacgttcagcttcacc 26041836
Score = 48.1 bits (24), Expect = 0.005
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 266 accatcggggactgcggcgacagcaacgccaa 297
||||||||||||||||||||||| | ||||||
Sbjct: 26041566 accatcggggactgcggcgacaggagcgccaa 26041597
>dbj|AK071011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080J16, full
insert sequence
Length = 1970
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1439 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 1387
>gb|AACV01007841.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007841, whole
genome shotgun sequence
Length = 16585
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 9276 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 9328
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 2672718 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 2672770
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 3123862 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 3123914
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 30390025 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 30390077
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 29458975 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 29459027
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 29367553 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 29367605
>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005H20,
complete sequence
Length = 135560
Score = 73.8 bits (37), Expect = 9e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacg 515
|||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 118417 catgttggcgaagcagacgcggaaccagccgggctcgcggcagtggcacgacg 118365
>gb|AACV01011739.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011739, whole
genome shotgun sequence
Length = 16650
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccggg 522
|||||| ||| |||| || | ||||||||||||||| ||| ||| |||||| ||| ||
Sbjct: 13281 catgttcgcgaagcacaccctgaaccagccgggctccgagcaatggcacgacgagcccgg 13340
Query: 523 cgacacgttgagcttcacc 541
||| |||||||||||||||
Sbjct: 13341 cgagacgttgagcttcacc 13359
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16,
complete sequence
Length = 139615
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccggg 522
|||||| ||| |||| || | ||||||||||||||| ||| ||| |||||| ||| ||
Sbjct: 104899 catgttcgcgaagcacaccctgaaccagccgggctccgagcaatggcacgacgagcccgg 104958
Query: 523 cgacacgttgagcttcacc 541
||| |||||||||||||||
Sbjct: 104959 cgagacgttgagcttcacc 104977
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0006B22, complete sequence
Length = 166052
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccggg 522
|||||| ||| |||| || | ||||||||||||||| ||| ||| |||||| ||| ||
Sbjct: 24059 catgttcgcgaagcacaccctgaaccagccgggctccgagcaatggcacgacgagcccgg 24118
Query: 523 cgacacgttgagcttcacc 541
||| |||||||||||||||
Sbjct: 24119 cgagacgttgagcttcacc 24137
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccggg 522
|||||| ||| |||| || | ||||||||||||||| ||| ||| |||||| ||| ||
Sbjct: 2221760 catgttcgcgaagcacaccctgaaccagccgggctccgagcaatggcacgacgagcccgg 2221819
Query: 523 cgacacgttgagcttcacc 541
||| |||||||||||||||
Sbjct: 2221820 cgagacgttgagcttcacc 2221838
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccggg 522
|||||| ||| |||| || | ||||||||||||||| ||| ||| |||||| ||| ||
Sbjct: 2163143 catgttcgcgaagcacaccctgaaccagccgggctccgagcaatggcacgacgagcccgg 2163202
Query: 523 cgacacgttgagcttcacc 541
||| |||||||||||||||
Sbjct: 2163203 cgagacgttgagcttcacc 2163221
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccggg 522
|||||| ||| |||| || | ||||||||||||||| ||| ||| |||||| ||| ||
Sbjct: 14428543 catgttcgcgaagcacaccctgaaccagccgggctccgagcaatggcacgacgagcccgg 14428602
Query: 523 cgacacgttgagcttcacc 541
||| |||||||||||||||
Sbjct: 14428603 cgagacgttgagcttcacc 14428621
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 54.0 bits (27), Expect = 8e-005
Identities = 66/79 (83%)
Strand = Plus / Plus
Query: 463 catgttggcgtagcagacgcggaaccagccgggctcgttgcagtggaacgacgtgccggg 522
|||||| ||| |||| || | ||||||||||||||| ||| ||| |||||| ||| ||
Sbjct: 14688605 catgttcgcgaagcacaccctgaaccagccgggctccgagcaatggcacgacgagcccgg 14688664
Query: 523 cgacacgttgagcttcacc 541
||| |||||||||||||||
Sbjct: 14688665 cgagacgttgagcttcacc 14688683
>dbj|AK106489.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A03, full
insert sequence
Length = 1562
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 900 gactgcggcgacagcaacgcca 921
>gb|AACV01013541.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013541, whole
genome shotgun sequence
Length = 13424
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 7111 gactgcggcgacagcaacgcca 7090
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0676F10
Length = 142510
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 33017 gactgcggcgacagcaacgcca 33038
>ref|NM_185777.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1428
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 919 gactgcggcgacagcaacgcca 940
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 4957256 gactgcggcgacagcaacgcca 4957277
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 678481 gactgcggcgacagcaacgcca 678502
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 9286133 gactgcggcgacagcaacgcca 9286154
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.077
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 275 gactgcggcgacagcaacgcca 296
||||||||||||||||||||||
Sbjct: 9265676 gactgcggcgacagcaacgcca 9265697
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 599,616
Number of Sequences: 438736
Number of extensions: 599616
Number of successful extensions: 13808
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13414
Number of HSP's gapped (non-prelim): 383
length of query: 543
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 522
effective length of database: 2,791,206,460
effective search space: 1457009772120
effective search space used: 1457009772120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)