BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591194.2.1
(591 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071465.1| Oryza sativa (japonica cultivar-group) cDNA... 272 2e-070
gb|AQ160819.1|AQ160819 nbxb0006E03r CUGI Rice BAC Library O... 246 1e-062
gb|AQ273678.1|AQ273678 nbxb0030P13f CUGI Rice BAC Library O... 246 1e-062
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 246 1e-062
dbj|AP003723.3| Oryza sativa (japonica cultivar-group) geno... 246 1e-062
dbj|AP003728.3| Oryza sativa (japonica cultivar-group) geno... 246 1e-062
gb|AACV01014794.1| Oryza sativa (japonica cultivar-group) c... 246 1e-062
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 246 1e-062
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 246 1e-062
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 246 1e-062
gb|AQ843693.1|AQ843693 nbxb0024N22r CUGI Rice BAC Library O... 216 1e-053
gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) c... 174 3e-041
ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA 174 3e-041
dbj|AP005185.4| Oryza sativa (japonica cultivar-group) geno... 174 3e-041
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 174 3e-041
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 174 3e-041
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 174 3e-041
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 174 3e-041
gb|AQ395780.2|AQ395780 nbxb0066E02f CUGI Rice BAC Library O... 72 4e-010
gb|AC093952.2| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|AC118289.2| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
ref|XM_475449.1| Oryza sativa (japonica cultivar-group), p... 70 1e-009
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 70 1e-009
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering s... 64 9e-008
dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA... 64 9e-008
gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) c... 64 9e-008
ref|XM_473496.1| Oryza sativa (japonica cultivar-group), p... 64 9e-008
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 64 9e-008
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 64 9e-008
emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromoso... 64 9e-008
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 64 9e-008
gb|AQ954565.1|AQ954565 nbeb0071M11r CUGI Rice BAC Library (... 58 6e-006
gb|AU101619.1|AU101619 AU101619 Rice root Oryza sativa (jap... 58 6e-006
gb|AU181258.1|AU181258 AU181258 Rice callus (2001) Oryza sa... 58 6e-006
dbj|AP004262.2| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
dbj|AK102922.1| Oryza sativa (japonica cultivar-group) cDNA... 58 6e-006
gb|AACV01015064.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|XM_476421.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 58 6e-006
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AK063648.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.084
dbj|AP004989.3| Oryza sativa (japonica cultivar-group) geno... 44 0.084
gb|AACV01014782.1| Oryza sativa (japonica cultivar-group) c... 44 0.084
gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N2... 42 0.33
gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K0... 42 0.33
gb|AACV01021910.1| Oryza sativa (japonica cultivar-group) c... 42 0.33
ref|NM_197271.1| Oryza sativa (japonica cultivar-group) put... 42 0.33
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 42 0.33
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 42 0.33
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.33
>dbj|AK071465.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098E17, full
insert sequence
Length = 1954
Score = 272 bits (137), Expect = 2e-070
Identities = 215/241 (89%)
Strand = Plus / Minus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 1668 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 1609
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 1608 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 1549
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 1548 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 1489
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctgcaatgtgtaccgagca 574
|||| |||||||| || || |||||||| ||||| |||||||| |||||||||||||||
Sbjct: 1488 tccaaaggcatgtaaattgcagtccatgattgaggatacacctgtaatgtgtaccgagca 1429
Query: 575 a 575
|
Sbjct: 1428 a 1428
>gb|AQ160819.1|AQ160819 nbxb0006E03r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0006E03r, DNA sequence
Length = 753
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 111 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 170
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 171 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 230
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 231 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 290
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 291 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 334
>gb|AQ273678.1|AQ273678 nbxb0030P13f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030P13f, DNA sequence
Length = 598
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 111 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 170
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 171 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 230
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 231 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 290
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 291 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 334
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 5316578 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 5316637
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 5316638 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 5316697
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 5316698 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 5316757
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 5316758 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 5316801
Score = 44.1 bits (22), Expect = 0.084
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 atattatcatcatcaatgatgt 107
||||||||||||||||||||||
Sbjct: 5123625 atattatcatcatcaatgatgt 5123646
>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0003H08
Length = 142068
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 5016 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 5075
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 5076 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 5135
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 5136 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 5195
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 5196 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 5239
>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0710B08
Length = 186991
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 153602 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 153661
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 153662 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 153721
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 153722 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 153781
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 153782 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 153825
>gb|AACV01014794.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014794, whole
genome shotgun sequence
Length = 29916
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Minus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 3642 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 3583
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 3582 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 3523
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 3522 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 3463
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 3462 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 3419
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 9257983 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 9258042
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 9258043 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 9258102
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 9258103 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 9258162
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 9258163 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 9258206
Score = 44.1 bits (22), Expect = 0.084
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 atattatcatcatcaatgatgt 107
||||||||||||||||||||||
Sbjct: 9074149 atattatcatcatcaatgatgt 9074170
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 26956720 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 26956779
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 26956780 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 26956839
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 26956840 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 26956899
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 26956900 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 26956943
Score = 44.1 bits (22), Expect = 0.084
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 atattatcatcatcaatgatgt 107
||||||||||||||||||||||
Sbjct: 26772886 atattatcatcatcaatgatgt 26772907
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 246 bits (124), Expect = 1e-062
Identities = 199/224 (88%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 27851093 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 27851152
Query: 395 ttggggatcgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaac 454
|| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 27851153 tttgggatcgggttctcgtcccgccatgagttcgccggagagtagacccggaggtagaat 27851212
Query: 455 tgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgttg 514
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 27851213 tgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatta 27851272
Query: 515 tccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 27851273 tccaaaggcatgtaaattgcagtccatgattgaggatacacctg 27851316
Score = 44.1 bits (22), Expect = 0.084
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 atattatcatcatcaatgatgt 107
||||||||||||||||||||||
Sbjct: 27658140 atattatcatcatcaatgatgt 27658161
>gb|AQ843693.1|AQ843693 nbxb0024N22r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0024N22r, DNA sequence
Length = 636
Score = 216 bits (109), Expect = 1e-053
Identities = 197/225 (87%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 335 attcagcttcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttc 394
|||||| |||||||||||||||||||||| || |||||||| |||||||| |||||||||
Sbjct: 156 attcaggttcagagaggcctggtccggcgccccgaggcccgaccgcagaggagcgcgttc 215
Query: 395 ttggggatcgggttctcgtcccgccacgagtt-cgccggcgagtagacgcggaggtagaa 453
|| ||||||||||||||||||||||| ||||| | || | |||||||| |||||||||||
Sbjct: 216 tttgggatcgggttctcgtcccgccatgagttccccccgagagtagacccggaggtagaa 275
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
|| |||||||||||||| || ||||||||||| ||||| | ||||||||||||||| ||
Sbjct: 276 ttgttggccgaggtactgtctagcccagctctctgacctgatgttccacatccccacatt 335
Query: 514 gtccagcggcatgtagatagccgtccatgactgagggtacacctg 558
|||| |||||||| || || |||||||| ||||| ||||||||
Sbjct: 336 atccaaaggcatgtaaattgcagtccatgattgaggatacacctg 380
>gb|AACV01016348.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016348,
whole genome shotgun sequence
Length = 5078
Score = 174 bits (88), Expect = 3e-041
Identities = 184/216 (85%)
Strand = Plus / Plus
Query: 343 tcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggat 402
|||||| |||| |||||||| |||| ||| ||||||||||| || ||||||||||||||
Sbjct: 237 tcagagcggccgtgtccggcgaccagcggcgcggccgcagaggagggcgttcttggggat 296
Query: 403 cgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggcc 462
|||| |||||| |||||||| ||| || || |||||||||||||||||||||| ||
Sbjct: 297 ggggtactcgtcgcgccacgacgtcgacgacgtccagacgcggaggtagaactgctgccc 356
Query: 463 gaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcgg 522
|||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||| ||
Sbjct: 357 gaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtccaatgg 416
Query: 523 catgtagatagccgtccatgactgagggtacacctg 558
||||||||| || |||||||| | |||||| |||||
Sbjct: 417 catgtagatcgcagtccatgaattagggtaaacctg 452
>ref|XM_478354.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1692
Score = 174 bits (88), Expect = 3e-041
Identities = 184/216 (85%)
Strand = Plus / Minus
Query: 343 tcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggat 402
|||||| |||| |||||||| |||| ||| ||||||||||| || ||||||||||||||
Sbjct: 1692 tcagagcggccgtgtccggcgaccagcggcgcggccgcagaggagggcgttcttggggat 1633
Query: 403 cgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggcc 462
|||| |||||| |||||||| ||| || || |||||||||||||||||||||| ||
Sbjct: 1632 ggggtactcgtcgcgccacgacgtcgacgacgtccagacgcggaggtagaactgctgccc 1573
Query: 463 gaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcgg 522
|||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||| ||
Sbjct: 1572 gaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtccaatgg 1513
Query: 523 catgtagatagccgtccatgactgagggtacacctg 558
||||||||| || |||||||| | |||||| |||||
Sbjct: 1512 catgtagatcgcagtccatgaattagggtaaacctg 1477
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0409B11
Length = 168354
Score = 174 bits (88), Expect = 3e-041
Identities = 184/216 (85%)
Strand = Plus / Minus
Query: 343 tcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggat 402
|||||| |||| |||||||| |||| ||| ||||||||||| || ||||||||||||||
Sbjct: 134495 tcagagcggccgtgtccggcgaccagcggcgcggccgcagaggagggcgttcttggggat 134436
Query: 403 cgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggcc 462
|||| |||||| |||||||| ||| || || |||||||||||||||||||||| ||
Sbjct: 134435 ggggtactcgtcgcgccacgacgtcgacgacgtccagacgcggaggtagaactgctgccc 134376
Query: 463 gaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcgg 522
|||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||| ||
Sbjct: 134375 gaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtccaatgg 134316
Query: 523 catgtagatagccgtccatgactgagggtacacctg 558
||||||||| || |||||||| | |||||| |||||
Sbjct: 134315 catgtagatcgcagtccatgaattagggtaaacctg 134280
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 174 bits (88), Expect = 3e-041
Identities = 184/216 (85%)
Strand = Plus / Minus
Query: 343 tcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggat 402
|||||| |||| |||||||| |||| ||| ||||||||||| || ||||||||||||||
Sbjct: 7068032 tcagagcggccgtgtccggcgaccagcggcgcggccgcagaggagggcgttcttggggat 7067973
Query: 403 cgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggcc 462
|||| |||||| |||||||| ||| || || |||||||||||||||||||||| ||
Sbjct: 7067972 ggggtactcgtcgcgccacgacgtcgacgacgtccagacgcggaggtagaactgctgccc 7067913
Query: 463 gaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcgg 522
|||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||| ||
Sbjct: 7067912 gaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtccaatgg 7067853
Query: 523 catgtagatagccgtccatgactgagggtacacctg 558
||||||||| || |||||||| | |||||| |||||
Sbjct: 7067852 catgtagatcgcagtccatgaattagggtaaacctg 7067817
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 174 bits (88), Expect = 3e-041
Identities = 184/216 (85%)
Strand = Plus / Minus
Query: 343 tcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggat 402
|||||| |||| |||||||| |||| ||| ||||||||||| || ||||||||||||||
Sbjct: 4997741 tcagagcggccgtgtccggcgaccagcggcgcggccgcagaggagggcgttcttggggat 4997682
Query: 403 cgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggcc 462
|||| |||||| |||||||| ||| || || |||||||||||||||||||||| ||
Sbjct: 4997681 ggggtactcgtcgcgccacgacgtcgacgacgtccagacgcggaggtagaactgctgccc 4997622
Query: 463 gaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcgg 522
|||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||| ||
Sbjct: 4997621 gaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtccaatgg 4997562
Query: 523 catgtagatagccgtccatgactgagggtacacctg 558
||||||||| || |||||||| | |||||| |||||
Sbjct: 4997561 catgtagatcgcagtccatgaattagggtaaacctg 4997526
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 174 bits (88), Expect = 3e-041
Identities = 184/216 (85%)
Strand = Plus / Minus
Query: 343 tcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggat 402
|||||| |||| |||||||| |||| ||| ||||||||||| || ||||||||||||||
Sbjct: 18397180 tcagagcggccgtgtccggcgaccagcggcgcggccgcagaggagggcgttcttggggat 18397121
Query: 403 cgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggcc 462
|||| |||||| |||||||| ||| || || |||||||||||||||||||||| ||
Sbjct: 18397120 ggggtactcgtcgcgccacgacgtcgacgacgtccagacgcggaggtagaactgctgccc 18397061
Query: 463 gaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcgg 522
|||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||| ||
Sbjct: 18397060 gaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtccaatgg 18397001
Query: 523 catgtagatagccgtccatgactgagggtacacctg 558
||||||||| || |||||||| | |||||| |||||
Sbjct: 18397000 catgtagatcgcagtccatgaattagggtaaacctg 18396965
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 1099449 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 1099390
Query: 514 gtcca 518
|||||
Sbjct: 1099389 gtcca 1099385
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 174 bits (88), Expect = 3e-041
Identities = 184/216 (85%)
Strand = Plus / Minus
Query: 343 tcagagaggcctggtccggcgtccagaggcccggccgcagagcagcgcgttcttggggat 402
|||||| |||| |||||||| |||| ||| ||||||||||| || ||||||||||||||
Sbjct: 19444957 tcagagcggccgtgtccggcgaccagcggcgcggccgcagaggagggcgttcttggggat 19444898
Query: 403 cgggttctcgtcccgccacgagttcgccggcgagtagacgcggaggtagaactgctggcc 462
|||| |||||| |||||||| ||| || || |||||||||||||||||||||| ||
Sbjct: 19444897 ggggtactcgtcgcgccacgacgtcgacgacgtccagacgcggaggtagaactgctgccc 19444838
Query: 463 gaggtactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcgg 522
|||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||| ||
Sbjct: 19444837 gaggtactgcctcgcccagttctccgaccggacgttccacatgcccacgttgtccaatgg 19444778
Query: 523 catgtagatagccgtccatgactgagggtacacctg 558
||||||||| || |||||||| | |||||| |||||
Sbjct: 19444777 catgtagatcgcagtccatgaattagggtaaacctg 19444742
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 1056720 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 1056661
Query: 514 gtcca 518
|||||
Sbjct: 1056660 gtcca 1056656
>gb|AQ395780.2|AQ395780 nbxb0066E02f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0066E02f, DNA sequence
Length = 459
Score = 71.9 bits (36), Expect = 4e-010
Identities = 78/92 (84%)
Strand = Plus / Minus
Query: 467 tactgcctggcccagctctcggacctcacgttccacatccccacgttgtccagcggcatg 526
|||||||| |||||| |||| ||| ||||||||||| ||||||||||||| ||||||
Sbjct: 458 tactgcctcgcccagttctccgacggaacgttccacatgcccacgttgtccaatggcatg 399
Query: 527 tagatagccgtccatgactgagggtacacctg 558
||||| || |||||||| | |||||| |||||
Sbjct: 398 tagatcgcagtccatgaattagggtaaacctg 367
>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
complete sequence
Length = 127642
Score = 69.9 bits (35), Expect = 1e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 426 tcgccggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctct 485
||||||||||| ||||| || ||||| ||||| ||||||||| ||||| ||||| | |
Sbjct: 19430 tcgccggcgagacgacgctgatgtagagctgctcgccgaggtagtgcctctcccagatgt 19489
Query: 486 cggacctcacgttccacatccccacgttgtc 516
||||||||||||||||||||| |||||||
Sbjct: 19490 tggacctcacgttccacatcccggcgttgtc 19520
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099O15,
complete sequence
Length = 137357
Score = 69.9 bits (35), Expect = 1e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 426 tcgccggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctct 485
||||||||||| ||||| || ||||| ||||| ||||||||| ||||| ||||| | |
Sbjct: 128562 tcgccggcgagacgacgctgatgtagagctgctcgccgaggtagtgcctctcccagatgt 128621
Query: 486 cggacctcacgttccacatccccacgttgtc 516
||||||||||||||||||||| |||||||
Sbjct: 128622 tggacctcacgttccacatcccggcgttgtc 128652
>ref|XM_475449.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1671
Score = 69.9 bits (35), Expect = 1e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 426 tcgccggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctct 485
||||||||||| ||||| || ||||| ||||| ||||||||| ||||| ||||| | |
Sbjct: 1576 tcgccggcgagacgacgctgatgtagagctgctcgccgaggtagtgcctctcccagatgt 1517
Query: 486 cggacctcacgttccacatccccacgttgtc 516
||||||||||||||||||||| |||||||
Sbjct: 1516 tggacctcacgttccacatcccggcgttgtc 1486
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 69.9 bits (35), Expect = 1e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 426 tcgccggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctct 485
||||||||||| ||||| || ||||| ||||| ||||||||| ||||| ||||| | |
Sbjct: 128562 tcgccggcgagacgacgctgatgtagagctgctcgccgaggtagtgcctctcccagatgt 128621
Query: 486 cggacctcacgttccacatccccacgttgtc 516
||||||||||||||||||||| |||||||
Sbjct: 128622 tggacctcacgttccacatcccggcgttgtc 128652
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 69.9 bits (35), Expect = 1e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 426 tcgccggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctct 485
||||||||||| ||||| || ||||| ||||| ||||||||| ||||| ||||| | |
Sbjct: 23738609 tcgccggcgagacgacgctgatgtagagctgctcgccgaggtagtgcctctcccagatgt 23738668
Query: 486 cggacctcacgttccacatccccacgttgtc 516
||||||||||||||||||||| |||||||
Sbjct: 23738669 tggacctcacgttccacatcccggcgttgtc 23738699
>gb|AU101215.1|AU101215 AU101215 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2633, mRNA sequence
Length = 434
Score = 63.9 bits (32), Expect = 9e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 426 tcgccggcgagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctct 485
||||||||||| ||||| || ||||| ||||| ||| ||||| ||||| ||||| | |
Sbjct: 158 tcgccggcgagacgacgctgatgtagagctgctcgccnaggtagtgcctctcccagatgt 99
Query: 486 cggacctcacgttccacatccccacgttgtc 516
||||||||||||||||||||| |||||||
Sbjct: 98 tggacctcacgttccacatcccggcgttgtc 68
>dbj|AK070790.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067H20, full
insert sequence
Length = 2016
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Minus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 1703 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 1644
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 1643 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 1584
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 1583 aggttccacatccccacattgtccagcg 1556
>dbj|AK071517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100A14, full
insert sequence
Length = 1977
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Minus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 1710 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 1651
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 1650 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 1591
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 1590 aggttccacatccccacattgtccagcg 1563
>gb|AACV01010279.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010279, whole
genome shotgun sequence
Length = 16074
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Plus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 11889 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 11948
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 11949 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 12008
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 12009 aggttccacatccccacattgtccagcg 12036
>ref|XM_473496.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1665
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Minus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 1619 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 1560
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 1559 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 1500
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 1499 aggttccacatccccacattgtccagcg 1472
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Plus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 1877259 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 1877318
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 1877319 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 1877378
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 1877379 aggttccacatccccacattgtccagcg 1877406
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Plus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 5903915 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 5903974
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 5903975 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 5904034
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 5904035 aggttccacatccccacattgtccagcg 5904062
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Plus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 25048014 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 25048073
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 25048074 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 25048133
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 25048134 aggttccacatccccacattgtccagcg 25048161
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
complete sequence
Length = 147806
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Plus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 107833 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 107892
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 107893 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 107952
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 107953 aggttccacatccccacattgtccagcg 107980
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 63.9 bits (32), Expect = 9e-008
Identities = 119/148 (80%)
Strand = Plus / Plus
Query: 374 cggccgcagagcagcgcgttcttggggatcgggttctcgtcccgccacgagttcgccggc 433
||||||||| | |||||||| | ||||| ||| |||||| || |||||| || ||||
Sbjct: 28100608 cggccgcagcggagcgcgttgctcgggatggggagctcgtcgcggaacgagtgcgacggc 28100667
Query: 434 gagtagacgcggaggtagaactgctggccgaggtactgcctggcccagctctcggacctc 493
| ||| ||||||||||||||||||||||| | ||| | |||||| ||| |||||
Sbjct: 28100668 gtgtacacgcggaggtagaactgctggccctgatacctgcgcgcccagtcctccgacctg 28100727
Query: 494 acgttccacatccccacgttgtccagcg 521
| ||||||||||||||| ||||||||||
Sbjct: 28100728 aggttccacatccccacattgtccagcg 28100755
>gb|AQ954565.1|AQ954565 nbeb0071M11r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0071M11r, DNA
sequence
Length = 369
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 272 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 213
Query: 514 gtcca 518
|||||
Sbjct: 212 gtcca 208
>gb|AU101619.1|AU101619 AU101619 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0531, mRNA sequence
Length = 699
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 294 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 235
Query: 514 gtcca 518
|||||
Sbjct: 234 gtcca 230
>gb|AU181258.1|AU181258 AU181258 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C11117, mRNA sequence
Length = 455
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 66 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 7
Query: 514 gtcca 518
|||||
Sbjct: 6 gtcca 2
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0022B05
Length = 151317
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 54308 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 54249
Query: 514 gtcca 518
|||||
Sbjct: 54248 gtcca 54244
>dbj|AK102922.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114C13, full
insert sequence
Length = 1967
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 1560 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 1501
Query: 514 gtcca 518
|||||
Sbjct: 1500 gtcca 1496
>gb|AACV01015064.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015064, whole
genome shotgun sequence
Length = 187699
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 123859 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 123800
Query: 514 gtcca 518
|||||
Sbjct: 123799 gtcca 123795
>ref|XM_476421.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1968
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 1561 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 1502
Query: 514 gtcca 518
|||||
Sbjct: 1501 gtcca 1497
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 1050657 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 1050598
Query: 514 gtcca 518
|||||
Sbjct: 1050597 gtcca 1050593
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055 genomic
scaffold, whole genome shotgun sequence
Length = 1431804
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 454 ctgctggccgaggtactgcctggcccagctctcggacctcacgttccacatccccacgtt 513
||||||||||||||| |||| | ||||| || | ||||||| ||||||||||||| |||
Sbjct: 1099449 ctgctggccgaggtattgccggtcccagttcgccgacctcaggttccacatcccctggtt 1099390
Query: 514 gtcca 518
|||||
Sbjct: 1099389 gtcca 1099385
>dbj|AK063648.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A03, full
insert sequence
Length = 1442
Score = 44.1 bits (22), Expect = 0.084
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 atattatcatcatcaatgatgt 107
||||||||||||||||||||||
Sbjct: 1354 atattatcatcatcaatgatgt 1375
>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:B1153E06
Length = 174588
Score = 44.1 bits (22), Expect = 0.084
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 86 atattatcatcatcaatgatgt 107
||||||||||||||||||||||
Sbjct: 7395 atattatcatcatcaatgatgt 7416
>gb|AACV01014782.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014782, whole
genome shotgun sequence
Length = 33340
Score = 44.1 bits (22), Expect = 0.084
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 86 atattatcatcatcaatgatgt 107
||||||||||||||||||||||
Sbjct: 9162 atattatcatcatcaatgatgt 9141
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete
sequence
Length = 151991
Score = 42.1 bits (21), Expect = 0.33
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 483 tctcggacctcacgttccacatccccacgttgtccag 519
|||| |||||||||||||| | ||||||||||||||
Sbjct: 143919 tctccgacctcacgttccagacgcccacgttgtccag 143955
>gb|AC090870.13| Oryza sativa chromosome 10 BAC OSJNBb0015K05 genomic sequence, complete
sequence
Length = 123292
Score = 42.1 bits (21), Expect = 0.33
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 483 tctcggacctcacgttccacatccccacgttgtccag 519
|||| |||||||||||||| | ||||||||||||||
Sbjct: 60272 tctccgacctcacgttccagacgcccacgttgtccag 60308
>gb|AACV01021910.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021910, whole
genome shotgun sequence
Length = 17704
Score = 42.1 bits (21), Expect = 0.33
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 483 tctcggacctcacgttccacatccccacgttgtccag 519
|||| |||||||||||||| | ||||||||||||||
Sbjct: 12929 tctccgacctcacgttccagacgcccacgttgtccag 12965
>ref|NM_197271.1| Oryza sativa (japonica cultivar-group) putative ascorbate oxidase
(OSJNBb0015K05.9), mRNA
Length = 1722
Score = 42.1 bits (21), Expect = 0.33
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 483 tctcggacctcacgttccacatccccacgttgtccag 519
|||| |||||||||||||| | ||||||||||||||
Sbjct: 1483 tctccgacctcacgttccagacgcccacgttgtccag 1447
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 839,998
Number of Sequences: 438736
Number of extensions: 839998
Number of successful extensions: 16805
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16171
Number of HSP's gapped (non-prelim): 626
length of query: 591
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 570
effective length of database: 2,791,206,460
effective search space: 1590987682200
effective search space used: 1590987682200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)