BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2576652.2.5
(1033 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK071238.1| Oryza sativa (japonica cultivar-group) cDNA... 505 e-140
gb|CF332241.1|CF332241 NACL--08-K19.g1 Rice callus plasmid ... 498 e-138
dbj|AK058911.1| Oryza sativa (japonica cultivar-group) cDNA... 472 e-130
dbj|AK102635.1| Oryza sativa (japonica cultivar-group) cDNA... 472 e-130
dbj|AK106215.1| Oryza sativa (japonica cultivar-group) cDNA... 472 e-130
dbj|AK111407.1| Oryza sativa (japonica cultivar-group) cDNA... 472 e-130
gb|AU075641.1|AU075641 AU075641 Rice panicle at flowering s... 414 e-113
gb|CV731888.1|CV731888 FLO--06-C02.b1 Rice flower lambda ph... 373 e-100
gb|CV730277.1|CV730277 FLO--03-L23.g1 Rice flower lambda ph... 355 3e-095
gb|CV731889.1|CV731889 FLO--06-C02.g1 Rice flower lambda ph... 319 2e-084
gb|CD670715.1|CD670715 OsMR130 5MT resistant rice mutant cD... 283 9e-074
gb|CF311843.1|CF311843 ABF--07-E17.b1 ABF3-overexpressing t... 270 1e-069
ref|NM_185778.1| Oryza sativa (japonica cultivar-group), p... 266 2e-068
gb|D41647.1|D41647 RICS4288A Rice shoot Oryza sativa (japon... 244 8e-062
gb|AU181590.1|AU181590 AU181590 Rice callus (2001) Oryza sa... 196 2e-047
gb|CF311844.1|CF311844 ABF--07-E17.g1 ABF3-overexpressing t... 182 3e-043
gb|AU181658.1|AU181658 AU181658 Rice callus (2001) Oryza sa... 167 1e-038
gb|CB658212.1|CB658212 OSJNEc14B09.f OSJNEc Oryza sativa (j... 141 9e-031
gb|CB683238.1|CB683238 OSJNEf11F16.f OSJNEf Oryza sativa (j... 141 9e-031
dbj|AK099911.1| Oryza sativa (japonica cultivar-group) cDNA... 133 2e-028
gb|CF279648.1|CF279648 14ETL--06-A11.g1 Rice etiolated leaf... 117 1e-023
gb|AC135926.1| Oryza sativa (japonica cultivar-group) chrom... 117 1e-023
gb|AC135915.2| Oryza sativa (japonica cultivar-group) chrom... 117 1e-023
gb|AACV01011648.1| Oryza sativa (japonica cultivar-group) c... 117 1e-023
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 117 1e-023
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 117 1e-023
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 117 1e-023
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 117 1e-023
gb|C72026.1|C72026 C72026 Rice panicle at flowering stage O... 109 3e-021
gb|AQ864837.1|AQ864837 nbeb0024E22r CUGI Rice BAC Library (... 105 5e-020
gb|CG206556.1|CG206556 TOS0176 TAMU Rice Japonica Nipponbar... 105 5e-020
gb|AACV01013541.1| Oryza sativa (japonica cultivar-group) c... 105 5e-020
dbj|AP005813.1| Oryza sativa (japonica cultivar-group) geno... 105 5e-020
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 105 5e-020
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 105 5e-020
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 105 5e-020
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 105 5e-020
gb|AACV01005675.1| Oryza sativa (japonica cultivar-group) c... 80 3e-012
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 80 3e-012
dbj|AP004776.3| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 80 3e-012
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 80 3e-012
gb|AZ127962.1|AZ127962 OSJNBb0069C21r CUGI Rice BAC Library... 76 4e-011
gb|AU097132.1|AU097132 AU097132 Rice shoot Oryza sativa (ja... 70 3e-009
gb|AQ871828.1|AQ871828 nbeb0044N14r CUGI Rice BAC Library (... 68 1e-008
>dbj|AK071238.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085B09, full
insert sequence
Length = 1035
Score = 505 bits (255), Expect = e-140
Identities = 468/539 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct: 630 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtactttataaatggt 571
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
|||||||||||||| ||||||||||| || ||||||||||| |||| || || ||||||
Sbjct: 570 ttctcagtcatgatgattgtaacccacccgacatatggaagaaagcctacagcccgtccc 511
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| ||||| || ||||||||||| ||||||||||| | || ||||| ||||||
Sbjct: 510 ataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcgtcccca 451
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || ||||| ||| | |||| ||||||||||||
Sbjct: 450 aaattattatcacctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacc 391
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | |||||||||||||| |||
Sbjct: 390 ttaatcacacggtgaacaattggaatttcacggccatcaatgttgaaaacaactatctct 331
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|||||||| ||||||||||||||||| || | ||| |||||||| |||||||||||||||
Sbjct: 330 cctgtgcggataggatctttgctcatgtgtagaaaaaggatatcgccccttttaaatcca 271
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| || ||||| |||||||||||||| ||| |||
Sbjct: 270 ggctccatgctaccagaaaggaccacaaccactggggactcgctccccgttgcaaccatc 211
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| | ||| ||||||||||||||||||||||||||||| ||| |
Sbjct: 210 aatcccttccatatgatcagtgccgaggtaacaatcataccgaggctgatgatttgcgcg 151
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| |||||||||||||| || |||||||||||||||| ||| || |||| ||| |||||
Sbjct: 150 aggacttggcggatctgtatcgagcggatcgactccaccgtatcgccgatgaatcccat 92
>gb|CF332241.1|CF332241 NACL--08-K19.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--08-K19, mRNA sequence
Length = 636
Score = 498 bits (251), Expect = e-138
Identities = 467/539 (86%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct: 617 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtactttataaatggt 558
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
|||||||||||||| ||||||||||| || ||||||||||| |||| || || ||||||
Sbjct: 557 ttctcagtcatgatgattgtaacccacccgacatatggaagaaagcctacagcccgtccc 498
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| ||||| || ||||||||||| ||||||||||| | || ||||| ||||||
Sbjct: 497 ataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcgtcccca 438
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || ||||| ||| | |||| ||||||||||||
Sbjct: 437 aaattattatcacctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacc 378
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | |||||||||||||| |||
Sbjct: 377 ttaatcacacggtgaacaattggaatttcacggccatcaatgttgaaaacaactatctct 318
Query: 640 cctgtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatcca 699
|||||||| ||||||||||||||||| || | ||| |||||||| |||||||||||||||
Sbjct: 317 cctgtgcggataggatctttgctcatgtgtagaaaaaggatatcgccccttttaaatcca 258
Query: 700 ggctccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatc 759
|||||||||||||| || || ||||| || ||||| |||| ||||||||| ||| |||
Sbjct: 257 ggctccatgctaccagaaaggaccacaaccactggggactagctccccgttgcaaccatc 198
Query: 760 aaacccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatg 819
|| |||||||||||||| | ||| ||||||||||||||||||||||||||||| ||| |
Sbjct: 197 aatcccttccatatgatcagtgccgaggtaacaatcataccgaggctgatgatttgcgcg 138
Query: 820 agcacttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| |||||||||||||| || |||||||||||||||| ||| || |||| ||| |||||
Sbjct: 137 aggacttggcggatctgtatcgagcggatcgactccaccgtatcgccgatgaatcccat 79
>dbj|AK058911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G10, full
insert sequence
Length = 1083
Score = 472 bits (238), Expect = e-130
Identities = 457/530 (86%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||||||||||||| ||| |||||||||
Sbjct: 797 gttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctcagtc 738
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
||||||||||||||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 737 atgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 678
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||
Sbjct: 677 tgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattgtta 618
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |||||
Sbjct: 617 tcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcaca 558
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 557 cggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcgg 498
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 497 atagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatg 438
Query: 709 ctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttc 768
||||| || || ||||| || ||||| || || || || || | |||||| |||||||||
Sbjct: 437 ctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaacccttc 378
Query: 769 catatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttgg 828
|||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||| |||
Sbjct: 377 catatgatcaatgcagaggtaacaatcatacctaagctgatgatttgcgccagcacctgg 318
Query: 829 cggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||| |||||| |||||||| ||||| |||||||| |||| |||||||||
Sbjct: 317 cggacctgcatcgagcggattgactctatcgtgtcgccgatgaaccccat 268
>dbj|AK102635.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099N11, full
insert sequence
Length = 1065
Score = 472 bits (238), Expect = e-130
Identities = 457/530 (86%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||||||||||||| ||| |||||||||
Sbjct: 766 gttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctcagtc 707
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
||||||||||||||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 706 atgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 647
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||
Sbjct: 646 tgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattgtta 587
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |||||
Sbjct: 586 tcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcaca 527
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 526 cggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcgg 467
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 466 atagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatg 407
Query: 709 ctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttc 768
||||| || || ||||| || ||||| || || || || || | |||||| |||||||||
Sbjct: 406 ctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaacccttc 347
Query: 769 catatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttgg 828
|||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||| |||
Sbjct: 346 catatgatcaatgcagaggtaacaatcatacctaagctgatgatttgcgccagcacctgg 287
Query: 829 cggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||| |||||| |||||||| ||||| |||||||| |||| |||||||||
Sbjct: 286 cggacctgcatcgagcggattgactctatcgtgtcgccgatgaaccccat 237
>dbj|AK106215.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H01, full
insert sequence
Length = 1063
Score = 472 bits (238), Expect = e-130
Identities = 457/530 (86%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||||||||||||| ||| |||||||||
Sbjct: 764 gttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctcagtc 705
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
||||||||||||||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 704 atgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 645
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||
Sbjct: 644 tgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattgtta 585
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |||||
Sbjct: 584 tcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcaca 525
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 524 cggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcgg 465
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 464 atagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatg 405
Query: 709 ctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttc 768
||||| || || ||||| || ||||| || || || || || | |||||| |||||||||
Sbjct: 404 ctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaacccttc 345
Query: 769 catatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttgg 828
|||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||| |||
Sbjct: 344 catatgatcaatgcagaggtaacaatcatacctaagctgatgatttgcgccagcacctgg 285
Query: 829 cggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||| |||||| |||||||| ||||| |||||||| |||| |||||||||
Sbjct: 284 cggacctgcatcgagcggattgactctatcgtgtcgccgatgaaccccat 235
>dbj|AK111407.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-E09, full
insert sequence
Length = 1517
Score = 472 bits (238), Expect = e-130
Identities = 457/530 (86%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||||||||||||| ||| |||||||||
Sbjct: 775 gttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctcagtc 716
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
||||||||||||||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 715 atgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 656
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||
Sbjct: 655 tgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattgtta 596
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |||||
Sbjct: 595 tcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcaca 536
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 535 cggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcgg 476
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 475 atagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatg 416
Query: 709 ctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttc 768
||||| || || ||||| || ||||| || || || || || | |||||| |||||||||
Sbjct: 415 ctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaacccttc 356
Query: 769 catatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttgg 828
|||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||| |||
Sbjct: 355 catatgatcaatgcagaggtaacaatcatacctaagctgatgatttgcgccagcacctgg 296
Query: 829 cggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||| |||||| |||||||| ||||| |||||||| |||| |||||||||
Sbjct: 295 cggacctgcatcgagcggattgactctatcgtgtcgccgatgaaccccat 246
>gb|AU075641.1|AU075641 AU075641 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0815_6Z, mRNA sequence
Length = 714
Score = 414 bits (209), Expect = e-113
Identities = 391/452 (86%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||||||||||||| ||| |||||||||
Sbjct: 457 gttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctcagtc 398
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
||||||||||||||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 397 atgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 338
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||
Sbjct: 337 tgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattgtta 278
Query: 529 tcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcact 588
|||||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| |||||
Sbjct: 277 tcaccttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcaca 218
Query: 589 cggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcga 648
||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 217 cggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcgg 158
Query: 649 ataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatg 708
||||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||
Sbjct: 157 atagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatg 98
Query: 709 ctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttc 768
||||| || || ||||| || ||||| || || || || || | |||||| ||| |||||
Sbjct: 97 ctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaanccttc 38
Query: 769 catatgattaatgcagaggtaacaatcatacc 800
|||||||| |||||||||||||||||||||||
Sbjct: 37 catatgatcaatgcagaggtaacaatcatacc 6
>gb|CV731888.1|CV731888 FLO--06-C02.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-C02,
mRNA sequence
Length = 503
Score = 373 bits (188), Expect = e-100
Identities = 359/416 (86%)
Strand = Plus / Minus
Query: 463 atgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaa 522
||||| ||||| || ||||||||||| ||||||||||| | || ||||| |||||||||
Sbjct: 503 atgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcgtccccaaaa 444
Query: 523 ttattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacctta 582
||||| |||||||| |||||||| || ||||| ||| | |||| |||||||||||||||
Sbjct: 443 ttattatcacctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacctta 384
Query: 583 atcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcct 642
||||| ||||| ||||||||||| ||||| ||||| | |||||||||||||| ||||||
Sbjct: 383 atcacacggtgaacaattggaatttcacggccatcaatgttgaaaacaactatctctcct 324
Query: 643 gtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggc 702
||||| ||||||||||||||||| || | ||| |||||||| ||||||||||||||||||
Sbjct: 323 gtgcggataggatctttgctcatgtgtagaaaaaggatatcgccccttttaaatccaggc 264
Query: 703 tccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaa 762
||||||||||| || || ||||| || ||||| |||||||||||||| ||| |||||
Sbjct: 263 tccatgctaccagaaaggaccacaaccactggggactcgctccccgttgcaaccatcaat 204
Query: 763 cccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagc 822
|||||||||||||| | ||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 203 cccttccatatgatcagtgccgaggtaacaatcataccgaggctgatgatttgcgcgagg 144
Query: 823 acttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||||||||||||| || |||||||||||||||| ||| || |||| ||| |||||
Sbjct: 143 acttggcggatctgtatcgagcggatcgactccaccgtatcgccgatgaatcccat 88
>gb|CV730277.1|CV730277 FLO--03-L23.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--03-L23,
mRNA sequence
Length = 536
Score = 355 bits (179), Expect = 3e-095
Identities = 344/399 (86%)
Strand = Plus / Minus
Query: 480 ccaaagctggccatgtgcatataatagtcggtcatccccaaaattattgtcacctttggt 539
||||||||| ||||||||||| | || ||||| |||||||||||||| |||||||| ||
Sbjct: 536 ccaaagctgcccatgtgcataaagaagacggtcgtccccaaaattattatcacctttcgt 477
Query: 540 gaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtggacaat 599
|||||| || ||||| ||| | |||| |||||||||||||||||||| ||||| |||||
Sbjct: 476 gaggatatcaacttcagcactttcctcgcgttcatggaccttaatcacacggtgaacaat 417
Query: 600 tggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggatcttt 659
|||||| ||||| ||||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct: 416 tggaatttcacggccatcaatgttgaaaacaactatctctcctgtgcggataggatcttt 357
Query: 660 gctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccgagag 719
|||||| || | ||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct: 356 gctcatgtgtagaaaaaggatatcgccccttttaaatccaggctccatgctaccagaaag 297
Query: 720 caccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatgattaa 779
||||| || ||||| |||||||||||||| ||| ||||| |||||||||||||| |
Sbjct: 296 gaccacaaccactggggactcgctccccgttgcaaccatcaatcccttccatatgatcag 237
Query: 780 tgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatctgcat 839
||| |||||||||| |||||||||||||||||| ||| ||| |||||||||||||| ||
Sbjct: 236 tgccgaggtaacaaccataccgaggctgatgatatgcgcgaggacttggcggatctgtat 177
Query: 840 ggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||||||||||||||| ||| || |||| ||| |||||
Sbjct: 176 cgagcggatcgactccaccgtatcgccgatgaatcccat 138
>gb|CV731889.1|CV731889 FLO--06-C02.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--06-C02,
mRNA sequence
Length = 498
Score = 319 bits (161), Expect = 2e-084
Identities = 284/325 (87%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggt 399
|||||||| || ||||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct: 174 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtactttataaatggt 233
Query: 400 ttctcagtcatgataattgtaacccagccaacatatggaaggtagcccaccgcacgtccc 459
|||||||||||||| ||||||||||| || ||||||||||| |||| || || ||||||
Sbjct: 234 ttctcagtcatgatgattgtaacccacccgacatatggaagaaagcctacagcccgtccc 293
Query: 460 ataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcccca 519
|||||||| ||||| || ||||||||||| ||||||||||| | || ||||| ||||||
Sbjct: 294 ataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcgtcccca 353
Query: 520 aaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacc 579
|||||||| |||||||| |||||||| || ||||| ||| | |||| ||||||||||||
Sbjct: 354 aaattattatcacctttcgtgaggatatcaacttcagcactttcctcgcgttcatggacc 413
Query: 580 ttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttct 639
|||||||| ||||| ||||||||||| ||||| ||||| | |||||||||||||| |||
Sbjct: 414 ttaatcacacggtgaacaattggaatttcacggccatcaatgttgaaaacaactatctct 473
Query: 640 cctgtgcgaataggatctttgctca 664
|||||||| ||||||||||||||||
Sbjct: 474 cctgtgcggataggatctttgctca 498
>gb|CD670715.1|CD670715 OsMR130 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 671
Score = 283 bits (143), Expect = 9e-074
Identities = 340/403 (84%), Gaps = 2/403 (0%)
Strand = Plus / Minus
Query: 478 agccaaagctggcc-atgtgcatataatagtcggtcatccccaaaattattgtcaccttt 536
|||||||| ||||| ||||||||| | || |||| |||||||||||||| || |||||
Sbjct: 523 agccaaaggtggcccatgtgcataaagaagacggtggtccccaaaattattatccccttt 464
Query: 537 -ggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcggtgga 595
||||||||| || ||||| || | |||| || ||||||||||||||||| ||||| |
Sbjct: 463 cggtgaggatatcaacttcagcgctttcctcgcggtcatggaccttaatcacgcggtgaa 404
Query: 596 caattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaataggat 655
|||||||||| | || ||||| | |||||||||||||| ||||||||||| |||||||
Sbjct: 403 caattggaatttggcggccatcaatgttgaaaacaactatctctcctgtgcggataggat 344
Query: 656 ctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccg 715
|||||||||| || | ||| |||||||| |||||||||||||||||||||||| |||| |
Sbjct: 343 ctttgctcatgtgtagaaaaaggatatcgccccttttaaatccaggctccatggtaccag 284
Query: 716 agagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatga 775
| || ||| | || ||||| |||||||||||||| ||| ||||| |||||||||||||
Sbjct: 283 aaaggaccgcaaccactggggactcgctccccgttgcaaccatcaatcccttccatatga 224
Query: 776 ttaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatct 835
| | ||| ||||||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct: 223 tcagtgccgaggtaacaatcataccgaggctgatgatttgcgcgaggacttggcggatct 164
Query: 836 gcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
| || |||||||||||||||| ||| || |||| ||| |||||
Sbjct: 163 gtatcgagcggatcgactccaccgtatcgccgatgaatcccat 121
>gb|CF311843.1|CF311843 ABF--07-E17.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-E17, mRNA sequence
Length = 543
Score = 270 bits (136), Expect = 1e-069
Identities = 256/296 (86%)
Strand = Plus / Minus
Query: 583 atcactcggtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcct 642
||||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||
Sbjct: 543 atcacacggtgaacaattggaatttcacggccatcaacattaaaaacaactatttctcca 484
Query: 643 gtgcgaataggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggc 702
||||| ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 483 gtgcggatagggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggt 424
Query: 703 tccatgctacccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaa 762
||||||||||| || || ||||| || ||||| || || || || || | |||||| |||
Sbjct: 423 tccatgctaccagaaagaaccaccaccactggagattcactacctgttacaactattaaa 364
Query: 763 cccttccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagc 822
|||||||||||||| ||||||||||||||||||||||| | ||||||||| ||| |||
Sbjct: 363 cccttccatatgatcaatgcagaggtaacaatcatacctaagctgatgatttgcgccagc 304
Query: 823 acttggcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|| ||||||| |||||| |||||||| ||||| |||||||| |||| |||||||||
Sbjct: 303 acctggcggacctgcatcgagcggattgactctatcgtgtcgccgatgaaccccat 248
>ref|NM_185778.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 651
Score = 266 bits (134), Expect = 2e-068
Identities = 236/270 (87%)
Strand = Plus / Minus
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcactcg 590
|||||| ||||||||||| ||||||||| | ||||| |||||||| ||||| ||||| ||
Sbjct: 402 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaaccttgatcacacg 343
Query: 591 gtggacaattggaatctcacgaccatcgacattgaaaacaactatttctcctgtgcgaat 650
||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 342 gtgaacaattggaatttcacggccatcaacattaaaaacaactatttctccagtgcggat 283
Query: 651 aggatctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgct 710
||| ||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct: 282 agggtctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatgct 223
Query: 711 acccgagagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttcca 770
||| || || ||||| || ||||| || || || || || | |||||| |||||||||||
Sbjct: 222 accagaaagaaccaccaccactggagattcactacctgttacaactattaaacccttcca 163
Query: 771 tatgattaatgcagaggtaacaatcatacc 800
|||||| |||||||||||||||||||||||
Sbjct: 162 tatgatcaatgcagaggtaacaatcatacc 133
Score = 161 bits (81), Expect = 9e-037
Identities = 159/185 (85%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||||||||||||| ||| |||||||||
Sbjct: 638 gttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctcagtc 579
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
||||||||||||||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 578 atgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 519
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||
Sbjct: 518 tgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattgtta 459
Query: 529 tcacc 533
|||||
Sbjct: 458 tcacc 454
>gb|D41647.1|D41647 RICS4288A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 390
Score = 244 bits (123), Expect = 8e-062
Identities = 221/254 (87%)
Strand = Plus / Minus
Query: 625 aaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatca 684
||||||||||| || |||||||| ||||||||||||||||| || | ||| ||||||||
Sbjct: 304 aaaacaactatctcncctgtgcggataggatctttgctcatgtgtagaaaaaggatatcg 245
Query: 685 ccccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctc 744
||||||||||||||||||||||||||||| || || ||||| || ||||| |||||||||
Sbjct: 244 ccccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctc 185
Query: 745 cccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcataccgagg 804
||||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 184 cccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcataccgagg 125
Query: 805 ctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccatcgtgtct 864
|||||||| ||| ||| |||||||||||||| || |||||||||||||||| ||| ||
Sbjct: 124 ctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccaccgtatcg 65
Query: 865 ccgacgaaccccat 878
|||| ||| |||||
Sbjct: 64 ccgatgaatcccat 51
>gb|AU181590.1|AU181590 AU181590 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C50564, mRNA sequence
Length = 448
Score = 196 bits (99), Expect = 2e-047
Identities = 192/223 (86%)
Strand = Plus / Minus
Query: 656 ctttgctcatatgcaaaaacaggatatcaccccttttaaatccaggctccatgctacccg 715
|||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct: 448 ctttgctcatgtgcaaaaacaggatgtcacctcttttaaatccaggttccatgctaccag 389
Query: 716 agagcaccactacaactggtgactcgctccccgtgaaaactatcaaacccttccatatga 775
| || ||||| || ||||| || || || || || | |||||| ||||||||||||||||
Sbjct: 388 aaagaaccaccaccactggagattcactacctgttacaactattaaacccttccatatga 329
Query: 776 ttaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttggcggatct 835
| ||||||||||||||||||||||| | ||||||||| ||| ||||| ||||||| ||
Sbjct: 328 tcaatgcagaggtaacaatcatacctaagctgatgatttgcgccagcacctggcggacct 269
Query: 836 gcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
|||| |||||||| ||||| |||||||| |||| |||||||||
Sbjct: 268 gcatcgagcggattgactctatcgtgtcgccgatgaaccccat 226
>gb|CF311844.1|CF311844 ABF--07-E17.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--07-E17, mRNA sequence
Length = 563
Score = 182 bits (92), Expect = 3e-043
Identities = 204/240 (85%), Gaps = 1/240 (0%)
Strand = Plus / Plus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||| ||||||||| ||| |||||||||
Sbjct: 323 gttataaccagtaggcccagcgcgccgatcagaagggacttaataattggcttctcagtc 382
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
||||||||||||||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 383 atgataattgtaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 442
Query: 469 tgttgctggagccaaagctggccatgtgcatata-atagtcggtcatccccaaaattatt 527
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| ||
Sbjct: 443 tgttgctgaagccaaagctgcccatgtgcatacacgaagtcggtcatccccaaaattgtt 502
Query: 528 gtcacctttggtgaggatgtccacttctgcagtgtcctgacgttcatggaccttaatcac 587
|||||||| |||| |||||| ||||||||| | ||||| |||||||| ||||| |||||
Sbjct: 503 atcaccttttgtgaagatgtcaacttctgcactctcctggcgttcatgaaccttgatcac 562
>gb|AU181658.1|AU181658 AU181658 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C51117, mRNA sequence
Length = 447
Score = 167 bits (84), Expect = 1e-038
Identities = 178/210 (84%)
Strand = Plus / Minus
Query: 349 gttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatggtttctcagtc 408
||||| ||||| | |||||| ||||| ||||| ||||||||||||| ||| |||||||||
Sbjct: 212 gttataaccagtaggcccagcgcgccgatcagaaggtacttaataattggcttctcagtc 153
Query: 409 atgataattgtaacccagccaacatatggaaggtagcccaccgcacgtcccataatgtgg 468
|||||||||| |||||| ||||||||||| || | || || || || |||||||| ||
Sbjct: 152 atgataattgnaacccatccaacatatggcagaaaaccaacagctcgccccataatatga 93
Query: 469 tgttgctggagccaaagctggccatgtgcatataatagtcggtcatccccaaaattattg 528
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| |
Sbjct: 92 tgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatccccaaaattgnta 33
Query: 529 tcacctttggtgaggatgtccacttctgca 558
|||||||| | ||||||||| |||| ||||
Sbjct: 32 tcaccttttgggaggatgtcaacttttgca 3
>gb|CB658212.1|CB658212 OSJNEc14B09.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14B09 5', mRNA sequence
Length = 859
Score = 141 bits (71), Expect = 9e-031
Identities = 211/257 (82%), Gaps = 3/257 (1%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||| ||||| |||||||| ||||||||||| ||||||| || | | ||||||
Sbjct: 485 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtgtgtaaagaattcggtcg 426
Query: 514 tccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttca 573
||| | ||| ||||||||||| ||||||| || |||| |||| | ||| | |||||
Sbjct: 425 tccataggattgttgtcaccttttgtgaggaaatcaacttgtgcattatcccgtcgttcg 366
Query: 574 tggaccttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaact 633
|| |||| ||| || || ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 365 tgaacctcaataacgcgatggacgattggaatttcacggccatc---attgaaaacaact 309
Query: 634 atttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcacccctttta 693
|| |||||||| || ||||| | ||||||||| ||||||||||||||||| ||||||| |
Sbjct: 308 atatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatcccccctttca 249
Query: 694 aatccaggctccatgct 710
|||||| ||||||||||
Sbjct: 248 aatccaagctccatgct 232
>gb|CB683238.1|CB683238 OSJNEf11F16.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11F16 5', mRNA sequence
Length = 823
Score = 141 bits (71), Expect = 9e-031
Identities = 211/257 (82%), Gaps = 3/257 (1%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||| ||||| |||||||| ||||||||||| ||||||| || | | ||||||
Sbjct: 447 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtgtgtaaagaattcggtcg 388
Query: 514 tccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttca 573
||| | ||| ||||||||||| ||||||| || |||| |||| | ||| | |||||
Sbjct: 387 tccataggattgttgtcaccttttgtgaggaaatcaacttgtgcattatcccgtcgttcg 328
Query: 574 tggaccttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaact 633
|| |||| ||| || || ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 327 tgaacctcaataacgcgatggacgattggaatttcacggccatc---attgaaaacaact 271
Query: 634 atttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcacccctttta 693
|| |||||||| || ||||| | ||||||||| ||||||||||||||||| ||||||| |
Sbjct: 270 atatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatcccccctttca 211
Query: 694 aatccaggctccatgct 710
|||||| ||||||||||
Sbjct: 210 aatccaagctccatgct 194
>dbj|AK099911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116D13, full
insert sequence
Length = 1489
Score = 133 bits (67), Expect = 2e-028
Identities = 210/257 (81%), Gaps = 3/257 (1%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||| ||||| |||||||| ||||||||||| ||||||| || | | ||||||
Sbjct: 492 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtgtgtaaagaattcggtcg 433
Query: 514 tccccaaaattattgtcacctttggtgaggatgtccacttctgcagtgtcctgacgttca 573
||| | ||| ||||||||||| ||||||| || |||| |||| | ||| | |||||
Sbjct: 432 tccataggattgttgtcaccttttgtgaggaaatcaacttgtgcattatcccgtcgttcg 373
Query: 574 tggaccttaatcactcggtggacaattggaatctcacgaccatcgacattgaaaacaact 633
|| |||| ||| || || ||||| |||||||| ||||| ||||| |||||||||||||
Sbjct: 372 tgaacctcaataacgcgatggacgattggaatttcacggccatc---attgaaaacaact 316
Query: 634 atttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatcacccctttta 693
|| |||||||| || ||||| | ||||||||| ||||||||||||||||| ||||||| |
Sbjct: 315 atatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatcccccctttca 256
Query: 694 aatccaggctccatgct 710
|||||| || |||||||
Sbjct: 255 aatccaagccccatgct 239
>gb|CF279648.1|CF279648 14ETL--06-A11.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--06-A11, mRNA sequence
Length = 355
Score = 117 bits (59), Expect = 1e-023
Identities = 98/111 (88%)
Strand = Plus / Minus
Query: 768 ccatatgattaatgcagaggtaacaatcataccgaggctgatgatctgcatgagcacttg 827
||||||||| ||||||||||||||||||||||| | ||||||||| ||| ||||| ||
Sbjct: 355 ccatatgatcaatgcagaggtaacaatcatacctaagctgatgatttgcgccagcacctg 296
Query: 828 gcggatctgcatggagcggatcgactccatcgtgtctccgacgaaccccat 878
||||| |||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 295 gcggacctgcatcgagcggattgactctatcgtgtcgccgacgaaccccat 245
>gb|AC135926.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0589A05, ***
SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 148291
Score = 117 bits (59), Expect = 1e-023
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||
Sbjct: 141443 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 141384
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct: 141383 ccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcatacc 141329
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||||||||| ||||| || ||||||||||| ||||||||||| | || |||||
Sbjct: 143445 cgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcg 143386
Query: 514 tccccaaaattattgtcacct 534
|||||||||||||| ||||||
Sbjct: 143385 tccccaaaattattatcacct 143365
Score = 75.8 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 391 ataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 143595 ataaatggtttctcagtcatgatgattgtaacccacccgacatatggaag 143546
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 142877 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 142818
Query: 682 tc 683
||
Sbjct: 142817 tc 142816
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||
Sbjct: 140738 accgaggctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccac 140679
Query: 858 cgtgtctccgacgaaccccat 878
||| || |||| ||| |||||
Sbjct: 140678 cgtatcgccgatgaatcccat 140658
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
|||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 143903 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 143855
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacg 611
||||||||||| ||||| ||||||||||| |||||
Sbjct: 143060 accttaatcacacggtgaacaattggaatttcacg 143026
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
OSJNBa0082F22, complete sequence
Length = 176038
Score = 117 bits (59), Expect = 1e-023
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||
Sbjct: 112594 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 112535
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct: 112534 ccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcatacc 112480
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||||||||| ||||| || ||||||||||| ||||||||||| | || |||||
Sbjct: 114596 cgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcg 114537
Query: 514 tccccaaaattattgtcacct 534
|||||||||||||| ||||||
Sbjct: 114536 tccccaaaattattatcacct 114516
Score = 75.8 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 391 ataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 114746 ataaatggtttctcagtcatgatgattgtaacccacccgacatatggaag 114697
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 114028 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 113969
Query: 682 tc 683
||
Sbjct: 113968 tc 113967
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||
Sbjct: 111889 accgaggctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccac 111830
Query: 858 cgtgtctccgacgaaccccat 878
||| || |||| ||| |||||
Sbjct: 111829 cgtatcgccgatgaatcccat 111809
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
|||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 115054 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 115006
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacg 611
||||||||||| ||||| ||||||||||| |||||
Sbjct: 114211 accttaatcacacggtgaacaattggaatttcacg 114177
>gb|AACV01011648.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011648, whole
genome shotgun sequence
Length = 19801
Score = 117 bits (59), Expect = 1e-023
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||
Sbjct: 14321 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 14380
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct: 14381 ccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcatacc 14435
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||||||||| ||||| || ||||||||||| ||||||||||| | || |||||
Sbjct: 12319 cgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcg 12378
Query: 514 tccccaaaattattgtcacct 534
|||||||||||||| ||||||
Sbjct: 12379 tccccaaaattattatcacct 12399
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 12887 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 12946
Query: 682 tc 683
||
Sbjct: 12947 tc 12948
Score = 75.8 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 391 ataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 12169 ataaatggtttctcagtcatgatgattgtaacccacccgacatatggaag 12218
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||
Sbjct: 15026 accgaggctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccac 15085
Query: 858 cgtgtctccgacgaaccccat 878
||| || |||| ||| |||||
Sbjct: 15086 cgtatcgccgatgaatcccat 15106
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
|||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 11861 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 11909
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 577 accttaatcactcggtggacaattggaatctcacg 611
||||||||||| ||||| ||||||||||| |||||
Sbjct: 12704 accttaatcacacggtgaacaattggaatttcacg 12738
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 117 bits (59), Expect = 1e-023
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||
Sbjct: 683355 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 683296
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct: 683295 ccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcatacc 683241
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||||||||| ||||| || ||||||||||| ||||||||||| | || |||||
Sbjct: 685357 cgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcg 685298
Query: 514 tccccaaaattattgtcacct 534
|||||||||||||| ||||||
Sbjct: 685297 tccccaaaattattatcacct 685277
Score = 75.8 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 391 ataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 685507 ataaatggtttctcagtcatgatgattgtaacccacccgacatatggaag 685458
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 684789 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 684730
Query: 682 tc 683
||
Sbjct: 684729 tc 684728
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||
Sbjct: 682650 accgaggctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccac 682591
Query: 858 cgtgtctccgacgaaccccat 878
||| || |||| ||| |||||
Sbjct: 682590 cgtatcgccgatgaatcccat 682570
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
|||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 685815 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 685767
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacg 611
||||||||||| ||||| ||||||||||| |||||
Sbjct: 684972 accttaatcacacggtgaacaattggaatttcacg 684938
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041
genomic scaffold, whole genome shotgun sequence
Length = 2540762
Score = 117 bits (59), Expect = 1e-023
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||
Sbjct: 703064 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 703005
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct: 703004 ccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcatacc 702950
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||||||||| ||||| || ||||||||||| ||||||||||| | || |||||
Sbjct: 705066 cgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcg 705007
Query: 514 tccccaaaattattgtcacct 534
|||||||||||||| ||||||
Sbjct: 705006 tccccaaaattattatcacct 704986
Score = 75.8 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 391 ataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 705216 ataaatggtttctcagtcatgatgattgtaacccacccgacatatggaag 705167
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 704498 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 704439
Query: 682 tc 683
||
Sbjct: 704438 tc 704437
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||
Sbjct: 702359 accgaggctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccac 702300
Query: 858 cgtgtctccgacgaaccccat 878
||| || |||| ||| |||||
Sbjct: 702299 cgtatcgccgatgaatcccat 702279
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
|||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 705524 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 705476
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacg 611
||||||||||| ||||| ||||||||||| |||||
Sbjct: 704681 accttaatcacacggtgaacaattggaatttcacg 704647
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 117 bits (59), Expect = 1e-023
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||
Sbjct: 12968464 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 12968405
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct: 12968404 ccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcatacc 12968350
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||||||||| ||||| || ||||||||||| ||||||||||| | || |||||
Sbjct: 12970466 cgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcg 12970407
Query: 514 tccccaaaattattgtcacct 534
|||||||||||||| ||||||
Sbjct: 12970406 tccccaaaattattatcacct 12970386
Score = 75.8 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 391 ataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 12970616 ataaatggtttctcagtcatgatgattgtaacccacccgacatatggaag 12970567
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 12969898 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 12969839
Query: 682 tc 683
||
Sbjct: 12969838 tc 12969837
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||
Sbjct: 12967759 accgaggctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccac 12967700
Query: 858 cgtgtctccgacgaaccccat 878
||| || |||| ||| |||||
Sbjct: 12967699 cgtatcgccgatgaatcccat 12967679
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
|||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 12970924 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 12970876
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacg 611
||||||||||| ||||| ||||||||||| |||||
Sbjct: 12970081 accttaatcacacggtgaacaattggaatttcacg 12970047
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 117 bits (59), Expect = 1e-023
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 686 cccttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcc 745
|||||||||||||||||||||||||||| || || ||||| || ||||| ||||||||||
Sbjct: 13149817 cccttttaaatccaggctccatgctaccagaaaggaccacaaccactggggactcgctcc 13149758
Query: 746 ccgtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|||| ||| ||||| |||||||||||||| | ||| |||||||||||||||||
Sbjct: 13149757 ccgttgcaaccatcaatcccttccatatgatcagtgccgaggtaacaatcatacc 13149703
Score = 81.8 bits (41), Expect = 7e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtca 513
|||||||||||||| ||||| || ||||||||||| ||||||||||| | || |||||
Sbjct: 13151819 cgtcccataatgtgatgttggtgaagccaaagctgcccatgtgcataaagaagacggtcg 13151760
Query: 514 tccccaaaattattgtcacct 534
|||||||||||||| ||||||
Sbjct: 13151759 tccccaaaattattatcacct 13151739
Score = 75.8 bits (38), Expect = 4e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 391 ataaatggtttctcagtcatgataattgtaacccagccaacatatggaag 440
||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 13151969 ataaatggtttctcagtcatgatgattgtaacccacccgacatatggaag 13151920
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 13151251 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 13151192
Query: 682 tc 683
||
Sbjct: 13151191 tc 13151190
Score = 73.8 bits (37), Expect = 2e-010
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 798 accgaggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccat 857
||||||||||||||| ||| ||| |||||||||||||| || ||||||||||||||||
Sbjct: 13149112 accgaggctgatgatttgcgcgaggacttggcggatctgtatcgagcggatcgactccac 13149053
Query: 858 cgtgtctccgacgaaccccat 878
||| || |||| ||| |||||
Sbjct: 13149052 cgtatcgccgatgaatcccat 13149032
Score = 58.0 bits (29), Expect = 1e-005
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtact 388
|||||||| || ||||||||||||||||| ||||| || ||||||||||
Sbjct: 13152277 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtact 13152229
Score = 46.1 bits (23), Expect = 0.038
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 577 accttaatcactcggtggacaattggaatctcacg 611
||||||||||| ||||| ||||||||||| |||||
Sbjct: 13151434 accttaatcacacggtgaacaattggaatttcacg 13151400
>gb|C72026.1|C72026 C72026 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E0815_1A, mRNA sequence
Length = 459
Score = 109 bits (55), Expect = 3e-021
Identities = 163/197 (82%), Gaps = 2/197 (1%)
Strand = Plus / Minus
Query: 684 accccttttaaatccaggctccatgctacccgagagcaccactaca-actggtgactcgc 742
|||||||||||||||||| ||||||||||| || || ||||| || ||||| || || |
Sbjct: 453 accccttttaaatccaggttccatgctaccagaaagaaccaccacccactggagattcac 394
Query: 743 tccccgtgaaaactatcaaaccc-ttccatatgattaatgcagaggtaacaatcataccg 801
| || || | |||||| |||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 393 tacctgttacaactattaaaccccttccatatgatcaatgcagaggtnacaatcatacct 334
Query: 802 aggctgatgatctgcatgagcacttggcggatctgcatggagcggatcgactccatcgtg 861
| ||| || || | | ||||| ||||||| |||||| |||||||| ||||| ||||||
Sbjct: 333 aagctnattattttcgccagcacctggcggacctgcatcgagcggattgactctatcgtg 274
Query: 862 tctccgacgaaccccat 878
|| |||| |||||||||
Sbjct: 273 tcgccgatgaaccccat 257
>gb|AQ864837.1|AQ864837 nbeb0024E22r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0024E22r, DNA sequence
Length = 741
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 312 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 253
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 252 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 200
>gb|CG206556.1|CG206556 TOS0176 TAMU Rice Japonica Nipponbare BAC Library (Hind III) Oryza
sativa (japonica cultivar-group) genomic clone
TOSJNBh005H01h, DNA sequence
Length = 665
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 447 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 388
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 387 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 335
>gb|AACV01013541.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013541, whole
genome shotgun sequence
Length = 13424
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Minus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 2840 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 2781
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2780 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 2728
Score = 91.7 bits (46), Expect = 7e-016
Identities = 67/74 (90%)
Strand = Plus / Minus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 3350 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 3291
Query: 674 acaggatatcaccc 687
||||||| ||||||
Sbjct: 3290 acaggatgtcaccc 3277
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
|||||||| || |||||||| ||||||||||| ||||||||||| | ||||||||||||
Sbjct: 3855 cccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatcc 3796
Query: 517 ccaaaattattgtcacct 534
|||||||| || ||||||
Sbjct: 3795 ccaaaattgttatcacct 3778
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 387 cttaataaatggtttctcagtcatgataattgtaacccagccaacatatgg 437
|||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 4016 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 3966
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacct 580
|||||| ||||||||||| ||||||||| | ||||| |||||||| ||||
Sbjct: 3627 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 3578
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0676F10
Length = 142510
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 37288 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 37347
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 37348 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 37400
Score = 91.7 bits (46), Expect = 7e-016
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 36778 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 36837
Query: 674 acaggatatcaccc 687
||||||| ||||||
Sbjct: 36838 acaggatgtcaccc 36851
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
|||||||| || |||||||| ||||||||||| ||||||||||| | ||||||||||||
Sbjct: 36273 cccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatcc 36332
Query: 517 ccaaaattattgtcacct 534
|||||||| || ||||||
Sbjct: 36333 ccaaaattgttatcacct 36350
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 387 cttaataaatggtttctcagtcatgataattgtaacccagccaacatatgg 437
|||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 36112 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 36162
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacct 580
|||||| ||||||||||| ||||||||| | ||||| |||||||| ||||
Sbjct: 36501 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 36550
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 4961527 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 4961586
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4961587 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 4961639
Score = 91.7 bits (46), Expect = 7e-016
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 4961017 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 4961076
Query: 674 acaggatatcaccc 687
||||||| ||||||
Sbjct: 4961077 acaggatgtcaccc 4961090
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
|||||||| || |||||||| ||||||||||| ||||||||||| | ||||||||||||
Sbjct: 4960512 cccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatcc 4960571
Query: 517 ccaaaattattgtcacct 534
|||||||| || ||||||
Sbjct: 4960572 ccaaaattgttatcacct 4960589
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 387 cttaataaatggtttctcagtcatgataattgtaacccagccaacatatgg 437
|||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 4960351 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 4960401
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacct 580
|||||| ||||||||||| ||||||||| | ||||| |||||||| ||||
Sbjct: 4960740 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 4960789
>gb|CH401210.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000047
genomic scaffold, whole genome shotgun sequence
Length = 2656042
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 682752 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 682811
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 682812 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 682864
Score = 91.7 bits (46), Expect = 7e-016
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 682242 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 682301
Query: 674 acaggatatcaccc 687
||||||| ||||||
Sbjct: 682302 acaggatgtcaccc 682315
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
|||||||| || |||||||| ||||||||||| ||||||||||| | ||||||||||||
Sbjct: 681737 cccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatcc 681796
Query: 517 ccaaaattattgtcacct 534
|||||||| || ||||||
Sbjct: 681797 ccaaaattgttatcacct 681814
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 387 cttaataaatggtttctcagtcatgataattgtaacccagccaacatatgg 437
|||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 681576 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 681626
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacct 580
|||||| ||||||||||| ||||||||| | ||||| |||||||| ||||
Sbjct: 681965 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 682014
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 9290404 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 9290463
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9290464 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 9290516
Score = 91.7 bits (46), Expect = 7e-016
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 9289894 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 9289953
Query: 674 acaggatatcaccc 687
||||||| ||||||
Sbjct: 9289954 acaggatgtcaccc 9289967
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
|||||||| || |||||||| ||||||||||| ||||||||||| | ||||||||||||
Sbjct: 9289389 cccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatcc 9289448
Query: 517 ccaaaattattgtcacct 534
|||||||| || ||||||
Sbjct: 9289449 ccaaaattgttatcacct 9289466
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 387 cttaataaatggtttctcagtcatgataattgtaacccagccaacatatgg 437
|||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 9289228 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 9289278
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacct 580
|||||| ||||||||||| ||||||||| | ||||| |||||||| ||||
Sbjct: 9289617 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 9289666
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 105 bits (53), Expect = 5e-020
Identities = 98/113 (86%)
Strand = Plus / Plus
Query: 688 cttttaaatccaggctccatgctacccgagagcaccactacaactggtgactcgctcccc 747
|||||||||||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct: 9269947 cttttaaatccaggttccatgctaccagaaagaaccaccaccactggagattcactacct 9270006
Query: 748 gtgaaaactatcaaacccttccatatgattaatgcagaggtaacaatcatacc 800
|| | |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9270007 gttacaactattaaacccttccatatgatcaatgcagaggtaacaatcatacc 9270059
Score = 91.7 bits (46), Expect = 7e-016
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 614 catcgacattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaa 673
|||| ||||| ||||||||||||||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 9269437 catcaacattaaaaacaactatttctccagtgcggatagggtctttgctcatgtgcaaaa 9269496
Query: 674 acaggatatcaccc 687
||||||| ||||||
Sbjct: 9269497 acaggatgtcaccc 9269510
Score = 83.8 bits (42), Expect = 2e-013
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 457 cccataatgtggtgttgctggagccaaagctggccatgtgcatataatagtcggtcatcc 516
|||||||| || |||||||| ||||||||||| ||||||||||| | ||||||||||||
Sbjct: 9268932 cccataatatgatgttgctgaagccaaagctgcccatgtgcatacagaagtcggtcatcc 9268991
Query: 517 ccaaaattattgtcacct 534
|||||||| || ||||||
Sbjct: 9268992 ccaaaattgttatcacct 9269009
Score = 77.8 bits (39), Expect = 1e-011
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 387 cttaataaatggtttctcagtcatgataattgtaacccagccaacatatgg 437
|||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 9268771 cttaataattggcttctcagtcatgataattgtaacccatccaacatatgg 9268821
Score = 52.0 bits (26), Expect = 6e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 531 acctttggtgaggatgtccacttctgcagtgtcctgacgttcatggacct 580
|||||| ||||||||||| ||||||||| | ||||| |||||||| ||||
Sbjct: 9269160 accttttgtgaggatgtcaacttctgcactctcctggcgttcatgaacct 9269209
>gb|AACV01005675.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005675, whole
genome shotgun sequence
Length = 12678
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 620 cattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacagga 679
|||||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||
Sbjct: 7201 cattgaaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacagga 7142
Query: 680 tatc 683
||||
Sbjct: 7141 tatc 7138
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtg 496
|||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 7814 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 7772
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 620 cattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacagga 679
|||||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||
Sbjct: 1431220 cattgaaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacagga 1431279
Query: 680 tatc 683
||||
Sbjct: 1431280 tatc 1431283
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtg 496
|||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 1430607 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 1430649
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0452F04
Length = 171421
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 620 cattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacagga 679
|||||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||
Sbjct: 112339 cattgaaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacagga 112398
Query: 680 tatc 683
||||
Sbjct: 112399 tatc 112402
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtg 496
|||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 111726 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 111768
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 620 cattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacagga 679
|||||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||
Sbjct: 22230245 cattgaaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacagga 22230304
Query: 680 tatc 683
||||
Sbjct: 22230305 tatc 22230308
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtg 496
|||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 22229632 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 22229674
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 620 cattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacagga 679
|||||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||
Sbjct: 35683309 cattgaaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacagga 35683368
Query: 680 tatc 683
||||
Sbjct: 35683369 tatc 35683372
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtg 496
|||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 35682696 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 35682738
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 79.8 bits (40), Expect = 3e-012
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 620 cattgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacagga 679
|||||||||||||||| |||||||| || ||||| | ||||||||| |||||||||||||
Sbjct: 35595947 cattgaaaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacagga 35596006
Query: 680 tatc 683
||||
Sbjct: 35596007 tatc 35596010
Score = 54.0 bits (27), Expect = 2e-004
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 454 cgtcccataatgtggtgttgctggagccaaagctggccatgtg 496
|||||||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 35595334 cgtcccatgatgtgatgttgctgaagccaaagctgcccatgtg 35595376
>gb|AZ127962.1|AZ127962 OSJNBb0069C21r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0069C21r, DNA
sequence
Length = 787
Score = 75.8 bits (38), Expect = 4e-011
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 622 ttgaaaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggata 681
|||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||
Sbjct: 503 ttgaaaacaactatctctcctgtgcggataggatctttgctcatgtgtagaaaaaggata 444
Query: 682 tc 683
||
Sbjct: 443 tc 442
>gb|AU097132.1|AU097132 AU097132 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2340, mRNA sequence
Length = 299
Score = 69.9 bits (35), Expect = 3e-009
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 340 tctttcgacgttatgaccagcaagcccagtgcgccaatcagcaggtacttaataaatgg 398
|||||||| || ||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 59 tctttcgatgtaatgaccagcaagcccagagcgccgatgagcaggtactttataaatgg 1
>gb|AQ871828.1|AQ871828 nbeb0044N14r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0044N14r, DNA sequence
Length = 624
Score = 67.9 bits (34), Expect = 1e-008
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 626 aaacaactatttctcctgtgcgaataggatctttgctcatatgcaaaaacaggatatc 683
|||||||||| |||||||| || ||||| | ||||||||| |||||||||||||||||
Sbjct: 212 aaacaactatatctcctgttcgtatagggtgtttgctcatttgcaaaaacaggatatc 155
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,324,135
Number of Sequences: 438736
Number of extensions: 1324135
Number of successful extensions: 7388
Number of sequences better than 0.5: 46
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7129
Number of HSP's gapped (non-prelim): 244
length of query: 1033
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1012
effective length of database: 2,791,206,460
effective search space: 2824700937520
effective search space used: 2824700937520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)