BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2568371.2.1
(782 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA... 339 1e-090
dbj|AP004635.3| Oryza sativa (japonica cultivar-group) geno... 339 1e-090
dbj|AP005504.3| Oryza sativa (japonica cultivar-group) geno... 339 1e-090
gb|AACV01017332.1| Oryza sativa (japonica cultivar-group) c... 339 1e-090
ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA 339 1e-090
ref|XM_480206.1| Oryza sativa (japonica cultivar-group), mRNA 339 1e-090
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 339 1e-090
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 339 1e-090
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 339 1e-090
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 339 1e-090
dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA... 331 3e-088
gb|D48065.2|D48065 RICS14103A Rice green shoot Oryza sativa... 153 2e-034
emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC O... 86 3e-014
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 86 3e-014
gb|AACV01025238.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
dbj|AP004459.2| Oryza sativa (japonica cultivar-group) geno... 82 5e-013
gb|AACV01018193.1| Oryza sativa (japonica cultivar-group) c... 82 5e-013
ref|XM_481802.1| Oryza sativa (japonica cultivar-group), mRNA 82 5e-013
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 82 5e-013
gb|AU082165.1|AU082165 AU082165 Rice cDNA from young root O... 80 2e-012
gb|AU082190.1|AU082190 AU082190 Rice shoot Oryza sativa (ja... 80 2e-012
gb|CV731587.1|CV731587 FLO--05-K24.b1 Rice flower lambda ph... 66 3e-008
dbj|AK102134.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AK102695.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AK105393.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
tpg|BK000090.1| TPA: Oryza sativa (japonica cultivar-group)... 66 3e-008
gb|AACV01012879.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 66 3e-008
ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA 66 3e-008
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 66 3e-008
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|CV731588.1|CV731588 FLO--05-K24.g1 Rice flower lambda ph... 58 7e-006
gb|AQ690930.1|AQ690930 nbxb0083H24r CUGI Rice BAC Library O... 46 0.028
gb|AQ795409.1|AQ795409 nbxb0056G17r CUGI Rice BAC Library O... 46 0.028
gb|CA754914.1|CA754914 BR030008000_PLATE_F09_70_078.ab1 OA ... 46 0.028
dbj|AK110534.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.028
gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G1... 46 0.028
gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01... 46 0.028
tpg|BK000089.1| TPA: Oryza sativa (japonica cultivar-group)... 46 0.028
gb|AACV01022174.1| Oryza sativa (japonica cultivar-group) c... 46 0.028
ref|NM_197900.1| Oryza sativa (japonica cultivar-group) put... 46 0.028
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 46 0.028
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.028
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.028
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 46 0.028
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 46 0.028
dbj|AK072260.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 44 0.11
dbj|AP005449.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AACV01013818.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CF304461.1|CF304461 ABF1--05-A18.g1 ABF3-overexpressing ... 42 0.44
dbj|AK068280.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.44
gb|AC145349.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|AC138608.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
ref|NT_107133.1| Oryza sativa (japonica cultivar-group) 42 0.44
gb|AACV01004748.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
gb|AACV01023607.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
ref|XM_466377.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.44
dbj|AP005116.3| Oryza sativa (japonica cultivar-group) geno... 42 0.44
dbj|AP005699.3| Oryza sativa (japonica cultivar-group) geno... 42 0.44
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 42 0.44
gb|CH401265.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.44
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 42 0.44
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
>dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-E08, full
insert sequence
Length = 2084
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 372 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 313
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 312 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 253
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 193
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 192 gtgctctacatcaacatcccccacatccatggccccggc 154
>dbj|AP004635.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0672D01
Length = 146954
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 94589 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 94530
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 94529 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 94470
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94469 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 94410
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 94409 gtgctctacatcaacatcccccacatccatggccccggc 94371
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0577B11
Length = 180355
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 17378 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 17319
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 17318 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 17259
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17258 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 17199
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 17198 gtgctctacatcaacatcccccacatccatggccccggc 17160
>gb|AACV01017332.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017332, whole
genome shotgun sequence
Length = 29034
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Plus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 28649 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 28708
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 28709 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 28768
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28769 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 28828
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 28829 gtgctctacatcaacatcccccacatccatggccccggc 28867
>ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 3707
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Plus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2868 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 2927
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 2928 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 2987
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2988 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 3047
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 3048 gtgctctacatcaacatcccccacatccatggccccggc 3086
>ref|XM_480206.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2084
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 372 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 313
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 312 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 253
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 193
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 192 gtgctctacatcaacatcccccacatccatggccccggc 154
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3306398 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 3306339
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 3306338 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 3306279
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3306278 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 3306219
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 3306218 gtgctctacatcaacatcccccacatccatggccccggc 3306180
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 15397285 cggcggcggcttcttcagcttctgggtgctcgcccacctcaaccccttcgccaagggcct 15397226
Query: 115 cctggggaggcacggcaagac 135
| ||||| ||| |||||||||
Sbjct: 15397225 catggggcggcgcggcaagac 15397205
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3445211 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 3445152
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 3445151 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 3445092
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445091 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 3445032
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 3445031 gtgctctacatcaacatcccccacatccatggccccggc 3444993
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3445211 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 3445152
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 3445151 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 3445092
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445091 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 3445032
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 3445031 gtgctctacatcaacatcccccacatccatggccccggc 3444993
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 14473326 cggcggcggcttcttcagcttctgggtgctcgcccacctcaaccccttcgccaagggcct 14473267
Query: 115 cctggggaggcacggcaagac 135
| ||||| ||| |||||||||
Sbjct: 14473266 catggggcggcgcggcaagac 14473246
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 339 bits (171), Expect = 1e-090
Identities = 207/219 (94%)
Strand = Plus / Minus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3538872 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 3538813
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 3538812 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 3538753
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3538752 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 3538693
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 3538692 gtgctctacatcaacatcccccacatccatggccccggc 3538654
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 15635372 cggcggcggcttcttcagcttctgggtgctcgcccacctcaaccccttcgccaagggcct 15635313
Query: 115 cctggggaggcacggcaagac 135
| ||||| ||| |||||||||
Sbjct: 15635312 catggggcggcgcggcaagac 15635292
>dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J18, full
insert sequence
Length = 3707
Score = 331 bits (167), Expect = 3e-088
Identities = 206/219 (94%)
Strand = Plus / Plus
Query: 5 gccttcgccaaggtgctggacggcgagtggacgcactggctcaaggtggccggcggcgtc 64
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2868 gccttcgccaaggtgctcgacggcgagtggacgcactggctcaaggtcgccggcggcgtg 2927
Query: 65 ttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcatcctggggagg 124
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |
Sbjct: 2928 ttcttcaacttctgggtcctcttccacctctaccccttcgccaagggcatcctcgggaag 2987
Query: 125 cacggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgcc 184
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2988 cacggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgtc 3047
Query: 185 gtgctgtacatcaacataccccacatccacggccccggc 223
||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 3048 gtgctctacatcaacatcccccacatccatggccccggc 3086
>gb|D48065.2|D48065 RICS14103A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 275
Score = 153 bits (77), Expect = 2e-034
Identities = 92/97 (94%)
Strand = Plus / Plus
Query: 127 cggcaagacccccgtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgccgt 186
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggcaagacgccggtggtggtgctcgtctggtgggccttcaccttcgtcatcaccgccgt 60
Query: 187 gctgtacatcaacataccccacatccacggccccggc 223
||| ||||||||||| ||||||||||| |||||||||
Sbjct: 61 gctctacatcaacatcccccacatccatggccccggc 97
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 138368
Score = 85.7 bits (43), Expect = 3e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 82159 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 82100
Query: 115 cct 117
|||
Sbjct: 82099 cct 82097
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 85.7 bits (43), Expect = 3e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 1149289 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 1149230
Query: 115 cct 117
|||
Sbjct: 1149229 cct 1149227
>gb|AACV01025238.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025238, whole
genome shotgun sequence
Length = 16638
Score = 85.7 bits (43), Expect = 3e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 9983 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 9924
Query: 115 cct 117
|||
Sbjct: 9923 cct 9921
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 85.7 bits (43), Expect = 3e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 3322126 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 3322067
Query: 115 cct 117
|||
Sbjct: 3322066 cct 3322064
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 85.7 bits (43), Expect = 3e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 18845231 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 18845172
Query: 115 cct 117
|||
Sbjct: 18845171 cct 18845169
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 85.7 bits (43), Expect = 3e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 22637039 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 22636980
Query: 115 cct 117
|||
Sbjct: 22636979 cct 22636977
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 85.7 bits (43), Expect = 3e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 22565230 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 22565171
Query: 115 cct 117
|||
Sbjct: 22565170 cct 22565168
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0410E11
Length = 150200
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 69527 cggcggcggcttcttcagcttctgggtgctcgcccacctcaaccccttcgccaagggcct 69468
Query: 115 cctggggaggcacggcaagac 135
| ||||| ||| |||||||||
Sbjct: 69467 catggggcggcgcggcaagac 69447
>gb|AACV01018193.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018193, whole
genome shotgun sequence
Length = 40282
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 30163 cggcggcggcttcttcagcttctgggtgctcgcccacctcaaccccttcgccaagggcct 30104
Query: 115 cctggggaggcacggcaagac 135
| ||||| ||| |||||||||
Sbjct: 30103 catggggcggcgcggcaagac 30083
>ref|XM_481802.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3348
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 3141 cggcggcggcttcttcagcttctgggtgctcgcccacctcaaccccttcgccaagggcct 3200
Query: 115 cctggggaggcacggcaagac 135
| ||||| ||| |||||||||
Sbjct: 3201 catggggcggcgcggcaagac 3221
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 81.8 bits (41), Expect = 5e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 6871320 cggcggcggcttcttcagcttctgggtgctcgcccacctcaaccccttcgccaagggcct 6871261
Query: 115 cctggggaggcacggcaagac 135
| ||||| ||| |||||||||
Sbjct: 6871260 catggggcggcgcggcaagac 6871240
>gb|AU082165.1|AU082165 AU082165 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10346, mRNA sequence
Length = 345
Score = 79.8 bits (40), Expect = 2e-012
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagg 110
|||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct: 269 cggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagg 324
>gb|AU082190.1|AU082190 AU082190 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5075, mRNA sequence
Length = 483
Score = 79.8 bits (40), Expect = 2e-012
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggcat 114
|||||||| | |||||| |||||||||||||| |||||||||||| |||||||||||| |
Sbjct: 413 cggcggcgccntcttcagcttctgggtgctgtgccacctctacccgttcgccaagggcct 472
Query: 115 cct 117
|||
Sbjct: 473 cct 475
>gb|CV731587.1|CV731587 FLO--05-K24.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-K24,
mRNA sequence
Length = 427
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 36 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 92
>dbj|AK102134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085F12, full
insert sequence
Length = 3968
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 3641 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 3697
>dbj|AK102695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103F21, full
insert sequence
Length = 2757
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 2336 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 2392
>dbj|AK105393.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B04, full
insert sequence
Length = 4089
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 3530 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 3586
>tpg|BK000090.1| TPA: Oryza sativa (japonica cultivar-group) cellulose synthase-like
D2 gene, complete cds
Length = 5000
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 4360 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 4416
>gb|AACV01012879.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012879, whole
genome shotgun sequence
Length = 80883
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 52153 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 52209
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 66136 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 66080
>ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 3968
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 3641 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 3697
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 623285 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 623229
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 552907 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 552851
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 552907 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 552851
Score = 44.1 bits (22), Expect = 0.11
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||| |||||||| |||||||||||| ||| |||||| ||||||||||||
Sbjct: 12997592 cggcggcggcttcttcagcttctgggtgctcgcgcactactacccgttcgccaagggc 12997649
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 65.9 bits (33), Expect = 3e-008
Identities = 51/57 (89%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct: 659708 cggcggcgtgttcttcagcttctgggtgctggctcacctttaccccttcgccaaggg 659652
Score = 44.1 bits (22), Expect = 0.11
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||| |||||||| |||||||||||| ||| |||||| ||||||||||||
Sbjct: 13260501 cggcggcggcttcttcagcttctgggtgctcgcgcactactacccgttcgccaagggc 13260558
>gb|CV731588.1|CV731588 FLO--05-K24.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-K24,
mRNA sequence
Length = 426
Score = 58.0 bits (29), Expect = 7e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 55 cggcggcgtcttcttcaacttctgggtgctgttccacctctaccccttcgccaaggg 111
||||||||| ||||||| ||| ||||||||| ||||| |||||||||||||||||
Sbjct: 391 cggcggcgtgttcttcagcttttgggtgctggctcacctttaccccttcgccaaggg 335
>gb|AQ690930.1|AQ690930 nbxb0083H24r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0083H24r, DNA sequence
Length = 720
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 10 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 60
>gb|AQ795409.1|AQ795409 nbxb0056G17r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0056G17r, DNA sequence
Length = 823
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 10 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 60
>gb|CA754914.1|CA754914 BR030008000_PLATE_F09_70_078.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030008000_PLATE_F09_70_078.ab1 similar to (AC027037)
putative cellulose synthase [Oryza sativa], mRNA
sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 82 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 132
>dbj|AK110534.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-A07, full
insert sequence
Length = 1144
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 579 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 629
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence,
complete sequence
Length = 139999
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 16 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 66
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
sequence
Length = 64582
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 61065 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 61115
>tpg|BK000089.1| TPA: Oryza sativa (japonica cultivar-group) cellulose synthase-like
D1 gene, complete cds
Length = 4188
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 3543 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 3593
>gb|AACV01022174.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022174, whole
genome shotgun sequence
Length = 50890
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 43779 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 43829
>ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase
(OSJNBa0035H01.10), mRNA
Length = 3384
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 3187 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 3237
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 4468741 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 4468791
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 10479935 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 10479985
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 46.1 bits (23), Expect = 0.028
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 62 gtcttcttcaacttctgggtgctgttccacctctaccccttcgccaagggc 112
|||||||||| ||||||||| || || |||||||||||||||||||||
Sbjct: 21345729 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggc 21345779
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,377,035
Number of Sequences: 438736
Number of extensions: 1377035
Number of successful extensions: 11359
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10684
Number of HSP's gapped (non-prelim): 675
length of query: 782
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 761
effective length of database: 2,791,206,460
effective search space: 2124108116060
effective search space used: 2124108116060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)