BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521641.2.1
(594 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK106887.1| Oryza sativa (japonica cultivar-group) cDNA... 329 1e-087
dbj|AP003722.3| Oryza sativa (japonica cultivar-group) geno... 329 1e-087
gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) c... 329 1e-087
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 329 1e-087
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 329 1e-087
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 329 1e-087
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 329 1e-087
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 329 1e-087
ref|NM_183708.1| Oryza sativa (japonica cultivar-group), p... 327 4e-087
gb|AC109595.2| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) c... 135 3e-029
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 135 3e-029
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 135 3e-029
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 135 3e-029
dbj|AK106851.1| Oryza sativa (japonica cultivar-group) cDNA... 103 1e-019
dbj|AP005657.3| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
gb|AACV01017130.1| Oryza sativa (japonica cultivar-group) c... 103 1e-019
ref|XM_479767.1| Oryza sativa (japonica cultivar-group), mRNA 103 1e-019
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 103 1e-019
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 103 1e-019
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 103 1e-019
dbj|AP005304.1| Oryza sativa (japonica cultivar-group) chro... 76 2e-011
dbj|AK103304.1| Oryza sativa (japonica cultivar-group) cDNA... 76 2e-011
dbj|AK106726.1| Oryza sativa (japonica cultivar-group) cDNA... 76 2e-011
dbj|AP006754.1| Oryza sativa (japonica cultivar-group) geno... 76 2e-011
dbj|AP004885.3| Oryza sativa (japonica cultivar-group) geno... 76 2e-011
gb|AACV01000462.1| Oryza sativa (japonica cultivar-group) c... 76 2e-011
gb|AACV01003235.1| Oryza sativa (japonica cultivar-group) c... 76 2e-011
ref|XM_463939.1| Oryza sativa (japonica cultivar-group), mRNA 76 2e-011
ref|NM_188491.1| Oryza sativa (japonica cultivar-group), p... 76 2e-011
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 76 2e-011
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 76 2e-011
dbj|AP002094.1| Oryza sativa (japonica cultivar-group) geno... 76 2e-011
dbj|AP002745.2| Oryza sativa (japonica cultivar-group) geno... 76 2e-011
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 76 2e-011
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 76 2e-011
dbj|AP004050.1| Oryza sativa (japonica cultivar-group) chro... 66 2e-008
dbj|AK101108.1| Oryza sativa (japonica cultivar-group) cDNA... 66 2e-008
dbj|AK105446.1| Oryza sativa (japonica cultivar-group) cDNA... 66 2e-008
dbj|AP005319.3| Oryza sativa (japonica cultivar-group) geno... 66 2e-008
gb|AACV01005346.1| Oryza sativa (japonica cultivar-group) c... 66 2e-008
ref|XM_467642.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-008
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 66 2e-008
ref|XM_506957.1| PREDICTED Oryza sativa (japonica cultivar-... 66 2e-008
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 66 2e-008
gb|C72268.1|C72268 C72268 Rice panicle at flowering stage O... 62 4e-007
dbj|AK109524.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
dbj|AK111165.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
gb|AACV01000461.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
ref|NM_188489.1| Oryza sativa (japonica cultivar-group), p... 54 9e-005
dbj|AK063458.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
dbj|AK099370.1| Oryza sativa (japonica cultivar-group) cDNA... 52 3e-004
gb|AC135914.2| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
gb|AACV01011153.1| Oryza sativa (japonica cultivar-group) c... 52 3e-004
ref|XM_476150.1| Oryza sativa (japonica cultivar-group), p... 52 3e-004
ref|NT_107225.1| Oryza sativa (japonica cultivar-group) 52 3e-004
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 52 3e-004
dbj|AK060686.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AP005619.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01013457.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
>dbj|AK106887.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F12, full
insert sequence
Length = 1921
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Minus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 1606 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 1547
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 1546 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 1487
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 1486 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 1427
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 1426 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 1367
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 1366 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 1309
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1011A07
Length = 150590
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Minus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 81297 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 81238
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 81237 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 81178
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 81177 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 81118
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 81117 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 81058
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 81057 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 81000
>gb|AACV01000869.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000869, whole
genome shotgun sequence
Length = 17382
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Plus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 2895 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 2954
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 2955 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 3014
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 3015 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 3074
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 3075 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 3134
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 3135 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 3192
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Minus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 11739911 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 11739852
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 11739851 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 11739792
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 11739791 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 11739732
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 11739731 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 11739672
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 11739671 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 11739614
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 6562651 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 6562710
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 6562711 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 6562764
Score = 54.0 bits (27), Expect = 9e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
||||||||||||| ||||||||||| ||||| |||| || || ||||| ||||||||
Sbjct: 6539167 gagcggcgcgttgttgtaggtggccacctccgtctgctggtagttgttcctctcgtcggc 6539226
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
||| | ||| || |||||| || ||||| ||||| ||| ||||||||||
Sbjct: 6539227 gaagccgtcgcgcccgtcggggccgccgaccacggcgccgtcgagcaggtt 6539277
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Minus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 249136 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 249077
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 249076 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 249017
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 249016 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 248957
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 248956 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 248897
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 248896 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 248839
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002
genomic scaffold, whole genome shotgun sequence
Length = 5008528
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Minus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 195412 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 195353
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 195352 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 195293
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 195292 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 195233
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 195232 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 195173
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 195172 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 195115
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Minus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 11811907 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 11811848
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 11811847 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 11811788
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 11811787 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 11811728
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 11811727 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 11811668
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 11811667 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 11811610
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 6630976 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 6631035
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 6631036 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 6631089
Score = 54.0 bits (27), Expect = 9e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
||||||||||||| ||||||||||| ||||| |||| || || ||||| ||||||||
Sbjct: 6614244 gagcggcgcgttgttgtaggtggccacctccgtctgctggtagttgttcctctcgtcggc 6614303
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
||| | ||| || |||||| || ||||| ||||| ||| ||||||||||
Sbjct: 6614304 gaagccgtcgcgcccgtcggggccgccgaccacggcgccgtcgagcaggtt 6614354
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 329 bits (166), Expect = 1e-087
Identities = 265/298 (88%)
Strand = Plus / Minus
Query: 297 gagcttagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgt 356
|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 11742129 gagcctagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgt 11742070
Query: 357 tgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcct 416
||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||
Sbjct: 11742069 tgatgtaggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcct 11742010
Query: 417 gcatgtcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgt 476
||| || ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||
Sbjct: 11742009 gcaggttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagt 11741950
Query: 477 acagcgcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggca 536
| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||
Sbjct: 11741949 agagcgcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggca 11741890
Query: 537 gcgacgaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 11741889 gcgacgacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 11741832
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 6564869 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 6564928
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 6564929 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 6564982
Score = 54.0 bits (27), Expect = 9e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
||||||||||||| ||||||||||| ||||| |||| || || ||||| ||||||||
Sbjct: 6541385 gagcggcgcgttgttgtaggtggccacctccgtctgctggtagttgttcctctcgtcggc 6541444
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
||| | ||| || |||||| || ||||| ||||| ||| ||||||||||
Sbjct: 6541445 gaagccgtcgcgcccgtcggggccgccgaccacggcgccgtcgagcaggtt 6541495
>ref|NM_183708.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1500
Score = 327 bits (165), Expect = 4e-087
Identities = 261/293 (89%)
Strand = Plus / Minus
Query: 302 tagagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatg 361
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1499 tagagctggccgtaggagtgggcgaggtaggcgagcgctccgacgagcggcgcgttgatg 1440
Query: 362 taggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatg 421
|||||||||||||| ||||||||||||||| | |||| |||||||||| |||||||| |
Sbjct: 1439 taggtggccggctcggagtgctcgtggtcgctgcgctggtcggggaactggtcctgcagg 1380
Query: 422 tcgggtcccccgacgacggcaccgacgagcaggttgggattggccccacccgcgtacagc 481
| ||| || ||||||||||| |||||||| | |||||| ||||| | || | ||| |||
Sbjct: 1379 ttgggccctccgacgacggcgccgacgaggacgttggggttggcgacgccggagtagagc 1320
Query: 482 gcggtgaacccctgcgagcaaccgatcctagccgggtgcgccgccacggacggcagcgac 541
|||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||
Sbjct: 1319 gcggtgaacccctgcgagcagccgatcctggcggggtgcgccgccaccgacggcagcgac 1260
Query: 542 gaagcgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
|| |||||||||||||| | |||||||||||||||||||| || ||||||||
Sbjct: 1259 gacgcgcggtggtggatcctccgcgggtacttggcgccgtacccgaccatgta 1207
>gb|AC109595.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_B02,
complete sequence
Length = 125650
Score = 135 bits (68), Expect = 3e-029
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 303 agagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatgt 362
||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 46623 agagctggccgtaggagtgggcgaggtaggcaagcgctccgacgagcggcgagttgatgt 46682
Query: 363 aggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatgt 422
||||||| ||||| |||||||||||||| | | || |||||||||| |||||||||||
Sbjct: 46683 aggtggctggctcggagtgctcgtggtcactgcactggtcggggaactagtcctgcatgt 46742
>gb|AACV01012211.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012211, whole
genome shotgun sequence
Length = 47359
Score = 135 bits (68), Expect = 3e-029
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 303 agagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatgt 362
||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 12404 agagctggccgtaggagtgggcgaggtaggcaagcgctccgacgagcggcgagttgatgt 12463
Query: 363 aggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatgt 422
||||||| ||||| |||||||||||||| | | || |||||||||| |||||||||||
Sbjct: 12464 aggtggctggctcggagtgctcgtggtcactgcactggtcggggaactagtcctgcatgt 12523
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 135 bits (68), Expect = 3e-029
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 303 agagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatgt 362
||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 1929947 agagctggccgtaggagtgggcgaggtaggcaagcgctccgacgagcggcgagttgatgt 1930006
Query: 363 aggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatgt 422
||||||| ||||| |||||||||||||| | | || |||||||||| |||||||||||
Sbjct: 1930007 aggtggctggctcggagtgctcgtggtcactgcactggtcggggaactagtcctgcatgt 1930066
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 135 bits (68), Expect = 3e-029
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 303 agagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatgt 362
||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 2977958 agagctggccgtaggagtgggcgaggtaggcaagcgctccgacgagcggcgagttgatgt 2978017
Query: 363 aggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatgt 422
||||||| ||||| |||||||||||||| | | || |||||||||| |||||||||||
Sbjct: 2978018 aggtggctggctcggagtgctcgtggtcactgcactggtcggggaactagtcctgcatgt 2978077
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 135 bits (68), Expect = 3e-029
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 303 agagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatgt 362
||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 20278271 agagctggccgtaggagtgggcgaggtaggcaagcgctccgacgagcggcgagttgatgt 20278330
Query: 363 aggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatgt 422
||||||| ||||| |||||||||||||| | | || |||||||||| |||||||||||
Sbjct: 20278331 aggtggctggctcggagtgctcgtggtcactgcactggtcggggaactagtcctgcatgt 20278390
Score = 52.0 bits (26), Expect = 3e-004
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 347 agcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcgggg 406
|||||||||||| |||||||||| | ||||| ||||||| || || |||||||||| |
Sbjct: 6776225 agcggcgcgttgttgtaggtggcggcctccgtctgctcgtagttgtcgcgctcgtcggcg 6776284
Query: 407 aacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
|| ||| | | |||||| || ||||||||||| ||| ||||||||||
Sbjct: 6776285 aagtcgtcgtactcgtcgggcccgccgacgacggcgccgtcgagcaggtt 6776334
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 135 bits (68), Expect = 3e-029
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 303 agagctggccgtaggagtgcgcgaggtaggcgagcgcgccgacgagcggcgcgttgatgt 362
||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct: 20624583 agagctggccgtaggagtgggcgaggtaggcaagcgctccgacgagcggcgagttgatgt 20624642
Query: 363 aggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgtcctgcatgt 422
||||||| ||||| |||||||||||||| | | || |||||||||| |||||||||||
Sbjct: 20624643 aggtggctggctcggagtgctcgtggtcactgcactggtcggggaactagtcctgcatgt 20624702
Score = 52.0 bits (26), Expect = 3e-004
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 347 agcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcgggg 406
|||||||||||| |||||||||| | ||||| ||||||| || || |||||||||| |
Sbjct: 6857618 agcggcgcgttgttgtaggtggcggcctccgtctgctcgtagttgtcgcgctcgtcggcg 6857677
Query: 407 aacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
|| ||| | | |||||| || ||||||||||| ||| ||||||||||
Sbjct: 6857678 aagtcgtcgtactcgtcgggcccgccgacgacggcgccgtcgagcaggtt 6857727
>dbj|AK106851.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A12, full
insert sequence
Length = 1782
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1629 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 1574
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0427G12
Length = 185545
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57801 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 57746
>gb|AACV01017130.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017130, whole
genome shotgun sequence
Length = 21954
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11121 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 11176
>ref|XM_479767.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1782
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1629 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 1574
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525007 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 524952
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065
genomic scaffold, whole genome shotgun sequence
Length = 5026603
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766022 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 765967
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766022 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 765967
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
complete sequence
Length = 28434780
Score = 103 bits (52), Expect = 1e-019
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 323 gcgaggtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758581 gcgaagtaggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctccga 758526
>dbj|AP005304.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0018H03, ***
SEQUENCING IN PROGRESS ***
Length = 155492
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 141434 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 141479
>dbj|AK103304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125D14, full
insert sequence
Length = 2320
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 1559 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 1500
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 1499 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 1446
>dbj|AK106726.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H03, full
insert sequence
Length = 1693
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1545 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 1500
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0018H03, complete sequence
Length = 94450
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 14041 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 13996
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0575F10
Length = 150462
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 71103 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 71058
>gb|AACV01000462.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000462, whole
genome shotgun sequence
Length = 16450
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 4476 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 4417
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 4416 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 4363
>gb|AACV01003235.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003235,
whole genome shotgun sequence
Length = 26447
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 812 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 857
>ref|XM_463939.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1693
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1545 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 1500
>ref|NM_188491.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1857
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 1461 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 1402
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 1401 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 1348
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 6562491 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 6562550
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 6562551 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 6562604
Score = 54.0 bits (27), Expect = 9e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
||||||||||||| ||||||||||| ||||| |||| || || ||||| ||||||||
Sbjct: 6539007 gagcggcgcgttgttgtaggtggccacctccgtctgctggtagttgttcctctcgtcggc 6539066
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
||| | ||| || |||||| || ||||| ||||| ||| ||||||||||
Sbjct: 6539067 gaagccgtcgcgcccgtcggggccgccgaccacggcgccgtcgagcaggtt 6539117
>ref|NT_107175.1| Oryza sativa (japonica cultivar-group)
Length = 2882457
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1240012 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 1239967
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0483F08
Length = 148985
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 45040 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 45099
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 45100 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 45153
Score = 54.0 bits (27), Expect = 9e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
||||||||||||| ||||||||||| ||||| |||| || || ||||| ||||||||
Sbjct: 21556 gagcggcgcgttgttgtaggtggccacctccgtctgctggtagttgttcctctcgtcggc 21615
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
||| | ||| || |||||| || ||||| ||||| ||| ||||||||||
Sbjct: 21616 gaagccgtcgcgcccgtcggggccgccgaccacggcgccgtcgagcaggtt 21666
>dbj|AP002745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0489G09
Length = 148707
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 132349 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 132408
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 132409 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 132462
Score = 54.0 bits (27), Expect = 9e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
||||||||||||| ||||||||||| ||||| |||| || || ||||| ||||||||
Sbjct: 108865 gagcggcgcgttgttgtaggtggccacctccgtctgctggtagttgttcctctcgtcggc 108924
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
||| | ||| || |||||| || ||||| ||||| ||| ||||||||||
Sbjct: 108925 gaagccgtcgcgcccgtcggggccgccgaccacggcgccgtcgagcaggtt 108975
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1259455 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 1259410
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 75.8 bits (38), Expect = 2e-011
Identities = 95/114 (83%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
|||||| |||||| |||||||||||| ||||| ||||||| || ||||| ||||||||
Sbjct: 6630976 gagcggggcgttgttgtaggtggccgcctccgtctgctcgtagttgttcctctcgtcggc 6631035
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
||| ||| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 6631036 gaagtcgtcgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 6631089
Score = 54.0 bits (27), Expect = 9e-005
Identities = 90/111 (81%)
Strand = Plus / Plus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggg 405
||||||||||||| ||||||||||| ||||| |||| || || ||||| ||||||||
Sbjct: 6614244 gagcggcgcgttgttgtaggtggccacctccgtctgctggtagttgttcctctcgtcggc 6614303
Query: 406 gaacctgtcctgcatgtcgggtcccccgacgacggcaccgacgagcaggtt 456
||| | ||| || |||||| || ||||| ||||| ||| ||||||||||
Sbjct: 6614304 gaagccgtcgcgcccgtcggggccgccgaccacggcgccgtcgagcaggtt 6614354
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1259455 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 1259410
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 30545532 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 30545484
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 75.8 bits (38), Expect = 2e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 330 aggcgagcgcgccgacgagcggcgcgttgatgtaggtggccggctc 375
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 1240012 aggcgagcgcgccgacgagcggcgcgttggtgtaggtggacggctc 1239967
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 30595165 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 30595117
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 30595368 gagcggcgcgttgatgtacgtggtgggctccgactgct 30595331
>dbj|AP004050.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1212_E12,
*** SEQUENCING IN PROGRESS ***
Length = 128866
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 35472 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 35424
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 35675 gagcggcgcgttgatgtacgtggtgggctccgactgct 35638
>dbj|AK101108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025E01, full
insert sequence
Length = 2072
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 1484 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 1436
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 1687 gagcggcgcgttgatgtacgtggtgggctccgactgct 1650
>dbj|AK105446.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B05, full
insert sequence
Length = 2067
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 1478 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 1430
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 1681 gagcggcgcgttgatgtacgtggtgggctccgactgct 1644
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0643A10
Length = 187931
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 107173 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 107125
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 107376 gagcggcgcgttgatgtacgtggtgggctccgactgct 107339
>gb|AACV01005346.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005346, whole
genome shotgun sequence
Length = 61964
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 2710 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 2758
>ref|XM_467642.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2067
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 1478 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 1430
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 1681 gagcggcgcgttgatgtacgtggtgggctccgactgct 1644
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 5760164 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 5760116
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 5760367 gagcggcgcgttgatgtacgtggtgggctccgactgct 5760330
>ref|XM_506957.1| PREDICTED Oryza sativa (japonica cultivar-group), P0643A10.32 mRNA
Length = 2072
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 1484 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 1436
Score = 44.1 bits (22), Expect = 0.085
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 346 gagcggcgcgttgatgtaggtggccggctccgagtgct 383
|||||||||||||||||| |||| |||||||| ||||
Sbjct: 1687 gagcggcgcgttgatgtacgtggtgggctccgactgct 1650
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 546 cgcggtggtggatgcggcgcgggtacttggcgccgtagcccaccatgta 594
||||||||||||| || |||||| || ||||||||||||||||||||||
Sbjct: 17092468 cgcggtggtggatccgccgcgggaacctggcgccgtagcccaccatgta 17092420
>gb|C72268.1|C72268 C72268 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1328_1A, mRNA sequence
Length = 337
Score = 61.9 bits (31), Expect = 4e-007
Identities = 87/106 (82%)
Strand = Plus / Minus
Query: 354 cgttgatgtaggtggccggctccgagtgctcgtggtcgttccgctcgtcggggaacctgt 413
||||| ||||| |||||| ||||| ||||||| || ||||| |||||||| ||| ||
Sbjct: 311 cgttgttgtagntggccgcctccgtctgctcgtagttgttcctctcgtcggcgaagtcgt 252
Query: 414 cctgcatgtcgggtcccccgacgacggcaccgacgagcaggttggg 459
| ||| |||||| || ||||||||||| ||| |||||||||||||
Sbjct: 251 cgtgctcgtcggggccgccgacgacggcgccgtcgagcaggttggg 206
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 768,044
Number of Sequences: 438736
Number of extensions: 768044
Number of successful extensions: 20778
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19476
Number of HSP's gapped (non-prelim): 1291
length of query: 594
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 573
effective length of database: 2,791,206,460
effective search space: 1599361301580
effective search space used: 1599361301580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)