BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521589.2.1
(1689 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK100598.1| Oryza sativa (japonica cultivar-group) cDNA... 1090 0.0
dbj|AK104994.2| Oryza sativa (japonica cultivar-group) cDNA... 1090 0.0
gb|AACV01011747.1| Oryza sativa (japonica cultivar-group) c... 589 e-165
gb|AC136224.2| Oryza sativa (japonica cultivar-group) chrom... 589 e-165
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 589 e-165
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 589 e-165
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 589 e-165
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 589 e-165
gb|CA754722.1|CA754722 BR030005000_PLATE_G07_55_055.ab1 OA ... 543 e-151
gb|AACV01012893.1| Oryza sativa (japonica cultivar-group) c... 289 2e-075
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 289 2e-075
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 289 2e-075
dbj|AP003302.2| Oryza sativa (japonica cultivar-group) geno... 289 2e-075
dbj|AP003446.3| Oryza sativa (japonica cultivar-group) geno... 289 2e-075
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 289 2e-075
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 289 2e-075
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 289 2e-075
gb|AQ256364.1|AQ256364 nbxb0016O01r CUGI Rice BAC Library O... 200 2e-048
gb|AQ289078.1|AQ289078 nbxb0034K09r CUGI Rice BAC Library O... 200 2e-048
gb|AQ576280.1|AQ576280 nbxb0088L20r CUGI Rice BAC Library O... 194 1e-046
dbj|AP004859.1| Oryza sativa (japonica cultivar-group) chro... 172 4e-040
dbj|AK072588.1| Oryza sativa (japonica cultivar-group) cDNA... 172 4e-040
dbj|AP004850.3| Oryza sativa (japonica cultivar-group) geno... 172 4e-040
gb|AACV01004242.1| Oryza sativa (japonica cultivar-group) c... 172 4e-040
ref|XM_465538.1| Oryza sativa (japonica cultivar-group), mRNA 172 4e-040
ref|XM_465542.1| Oryza sativa (japonica cultivar-group), mRNA 172 4e-040
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 172 4e-040
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 172 4e-040
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 172 4e-040
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 172 4e-040
gb|AACV01004243.1| Oryza sativa (japonica cultivar-group) c... 167 2e-038
gb|AACV01004244.1| Oryza sativa (japonica cultivar-group) c... 58 2e-005
gb|CB640809.1|CB640809 OSJNEa16H24.f OSJNEa Oryza sativa (j... 54 3e-004
gb|CB647738.1|CB647738 OSJNEb10M18.f OSJNEb Oryza sativa (j... 54 3e-004
gb|AC108505.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
dbj|AK099695.1| Oryza sativa (japonica cultivar-group) cDNA... 54 3e-004
gb|AC112160.3| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
gb|AACV01012465.1| Oryza sativa (japonica cultivar-group) c... 54 3e-004
ref|NT_107214.1| Oryza sativa (japonica cultivar-group) 54 3e-004
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 54 3e-004
gb|AU093333.1|AU093333 AU093333 Rice callus Oryza sativa (j... 50 0.004
gb|C19435.2|C19435 C19435 Rice panicle at ripening stage Or... 46 0.062
gb|CB638653.1|CB638653 OSJNEa07C22.f OSJNEa Oryza sativa (j... 46 0.062
dbj|AP004726.1| Oryza sativa (japonica cultivar-group) chro... 46 0.062
dbj|AK058424.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.062
dbj|AK059089.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.062
dbj|AK064758.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.062
gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 ... 46 0.062
dbj|AP003522.3| Oryza sativa (japonica cultivar-group) geno... 46 0.062
gb|AACV01006918.1| Oryza sativa (japonica cultivar-group) c... 46 0.062
gb|AACV01009688.1| Oryza sativa (japonica cultivar-group) c... 46 0.062
gb|AACV01013637.1| Oryza sativa (japonica cultivar-group) c... 46 0.062
ref|XM_468710.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.062
ref|NT_079921.2| Oryza sativa (japonica cultivar-group) 46 0.062
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.062
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.062
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.062
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.062
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.062
emb|AL731641.4| Oryza sativa (japonica cultivar-group) chro... 46 0.062
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.062
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.062
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.062
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.062
>dbj|AK100598.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107C01, full
insert sequence
Length = 1838
Score = 1090 bits (550), Expect = 0.0
Identities = 867/972 (89%), Gaps = 3/972 (0%)
Strand = Plus / Minus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 1580 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 1521
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 1520 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 1461
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 1460 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 1401
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1400 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 1341
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 1340 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 1281
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 1280 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 1221
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 1220 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 1161
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 1160 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 1101
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||||| ||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 1100 caccgccgcgccg---cccagcaccgacgccatctcctcccgcaccttcgactggatgct 1044
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 1043 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 984
Query: 779 tgcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcct 838
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 agcaacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcct 924
Query: 839 ctcggcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcacctt 898
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct: 923 ctcggcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcactct 864
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 863 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 804
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 803 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 744
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 743 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 684
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 683 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 624
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 623 catcatcagctg 612
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Minus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 559 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 500
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 499 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 440
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 439 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 380
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 379 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 320
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 319 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 260
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 259 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 200
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 199 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 140
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 139 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 96
>dbj|AK104994.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H11, full
insert sequence
Length = 1796
Score = 1090 bits (550), Expect = 0.0
Identities = 867/972 (89%), Gaps = 3/972 (0%)
Strand = Plus / Minus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 1582 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 1523
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 1522 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 1463
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 1462 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 1403
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1402 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 1343
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 1342 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 1283
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 1282 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 1223
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 1222 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 1163
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 1162 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 1103
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||||| ||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 1102 caccgccgcgccg---cccagcaccgacgccatctcctcccgcaccttcgactggatgct 1046
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 1045 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 986
Query: 779 tgcgacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcct 838
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 agcaacgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcct 926
Query: 839 ctcggcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcacctt 898
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct: 925 ctcggcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcactct 866
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 865 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 806
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 805 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 746
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 686
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 626
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 625 catcatcagctg 614
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Minus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 561 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 502
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 442
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 441 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 382
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 381 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 322
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 321 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 262
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 261 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 202
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 201 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 142
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 141 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 98
>gb|AACV01011747.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011747, whole
genome shotgun sequence
Length = 14985
Score = 589 bits (297), Expect = e-165
Identities = 527/603 (87%), Gaps = 3/603 (0%)
Strand = Plus / Minus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 14826 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 14767
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 14766 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 14707
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 14706 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 14647
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14646 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 14587
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 14586 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 14527
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 14526 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 14467
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 14466 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 14407
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 14406 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 14347
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||| ||||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 14346 caccgccgcgc---cgcccagcaccgacgccatctcctcccgcaccttcgactggatgct 14290
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 14289 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 14230
Query: 779 tgc 781
|||
Sbjct: 14229 tgc 14227
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Minus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 11084 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 11025
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 11024 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 10965
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 10964 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 10905
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 10904 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 10845
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 10844 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 10785
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 10784 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 10725
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 10724 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 10665
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 10664 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 10621
Score = 325 bits (164), Expect = 4e-086
Identities = 230/252 (91%)
Strand = Plus / Minus
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 11388 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 11329
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 11328 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 11269
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 11268 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 11209
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 11208 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 11149
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 11148 catcatcagctg 11137
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Minus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13140 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 13081
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 13080 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 13028
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22,
complete sequence
Length = 166052
Score = 589 bits (297), Expect = e-165
Identities = 527/603 (87%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 102206 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 102265
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 102266 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 102325
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 102326 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 102385
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 102386 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 102445
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 102446 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 102505
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 102506 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 102565
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 102566 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 102625
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 102626 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 102685
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||| ||||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 102686 caccgccgcgc---cgcccagcaccgacgccatctcctcccgcaccttcgactggatgct 102742
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 102743 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 102802
Query: 779 tgc 781
|||
Sbjct: 102803 tgc 102805
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Plus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 105948 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 106007
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 106008 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 106067
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 106068 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 106127
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 106128 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 106187
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 106188 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 106247
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 106248 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 106307
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 106308 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 106367
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 106368 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 106411
Score = 325 bits (164), Expect = 4e-086
Identities = 230/252 (91%)
Strand = Plus / Plus
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 105644 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 105703
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 105704 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 105763
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 105764 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 105823
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 105824 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 105883
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 105884 catcatcagctg 105895
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Plus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103892 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 103951
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 103952 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 104004
>ref|NT_107206.1| Oryza sativa (japonica cultivar-group)
Length = 2441071
Score = 589 bits (297), Expect = e-165
Identities = 527/603 (87%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 2299947 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 2300006
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 2300007 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 2300066
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 2300067 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 2300126
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2300127 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 2300186
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 2300187 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 2300246
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 2300247 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 2300306
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 2300307 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 2300366
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 2300367 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 2300426
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||| ||||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 2300427 caccgccgcgc---cgcccagcaccgacgccatctcctcccgcaccttcgactggatgct 2300483
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 2300484 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 2300543
Query: 779 tgc 781
|||
Sbjct: 2300544 tgc 2300546
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Plus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 2303689 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 2303748
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 2303749 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 2303808
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 2303809 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 2303868
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 2303869 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 2303928
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 2303929 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 2303988
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 2303989 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 2304048
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 2304049 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 2304108
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 2304109 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 2304152
Score = 325 bits (164), Expect = 4e-086
Identities = 230/252 (91%)
Strand = Plus / Plus
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 2303385 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 2303444
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 2303445 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 2303504
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 2303505 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 2303564
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2303565 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 2303624
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 2303625 catcatcagctg 2303636
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Plus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2301633 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 2301692
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 2301693 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 2301745
>gb|CH401204.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000041 genomic
scaffold, whole genome shotgun sequence
Length = 2540762
Score = 589 bits (297), Expect = e-165
Identities = 527/603 (87%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 2244526 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 2244585
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 2244586 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 2244645
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 2244646 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 2244705
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2244706 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 2244765
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 2244766 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 2244825
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 2244826 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 2244885
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 2244886 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 2244945
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 2244946 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 2245005
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||| ||||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 2245006 caccgccgcgc---cgcccagcaccgacgccatctcctcccgcaccttcgactggatgct 2245062
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 2245063 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 2245122
Query: 779 tgc 781
|||
Sbjct: 2245123 tgc 2245125
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Plus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 2248268 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 2248327
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 2248328 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 2248387
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 2248388 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 2248447
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 2248448 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 2248507
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 2248508 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 2248567
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 2248568 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 2248627
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 2248628 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 2248687
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 2248688 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 2248731
Score = 325 bits (164), Expect = 4e-086
Identities = 230/252 (91%)
Strand = Plus / Plus
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 2247964 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 2248023
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 2248024 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 2248083
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 2248084 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 2248143
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2248144 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 2248203
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 2248204 catcatcagctg 2248215
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Plus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2246212 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 2246271
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 2246272 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 2246324
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 589 bits (297), Expect = e-165
Identities = 527/603 (87%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 14509926 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 14509985
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 14509986 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 14510045
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 14510046 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 14510105
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14510106 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 14510165
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 14510166 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 14510225
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 14510226 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 14510285
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 14510286 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 14510345
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 14510346 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 14510405
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||| ||||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 14510406 caccgccgcgc---cgcccagcaccgacgccatctcctcccgcaccttcgactggatgct 14510462
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 14510463 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 14510522
Query: 779 tgc 781
|||
Sbjct: 14510523 tgc 14510525
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Plus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 14513668 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 14513727
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 14513728 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 14513787
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 14513788 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 14513847
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 14513848 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 14513907
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 14513908 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 14513967
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 14513968 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 14514027
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 14514028 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 14514087
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 14514088 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 14514131
Score = 325 bits (164), Expect = 4e-086
Identities = 230/252 (91%)
Strand = Plus / Plus
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 14513364 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 14513423
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 14513424 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 14513483
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 14513484 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 14513543
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14513544 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 14513603
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 14513604 catcatcagctg 14513615
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Plus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14511612 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 14511671
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 14511672 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 14511724
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 23804997 gagcacctccttggcgagctccgacgtcgacaccaccac 23804959
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 589 bits (297), Expect = e-165
Identities = 527/603 (87%), Gaps = 3/603 (0%)
Strand = Plus / Plus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 14766792 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 14766851
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 14766852 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 14766911
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 14766912 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 14766971
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14766972 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 14767031
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 14767032 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 14767091
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 14767092 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 14767151
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 14767152 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 14767211
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 14767212 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 14767271
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||| ||||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 14767272 caccgccgcgc---cgcccagcaccgacgccatctcctcccgcaccttcgactggatgct 14767328
Query: 719 cgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgc 778
|||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| ||
Sbjct: 14767329 cgggtggttcaccagctccgcgattccccattcgatcgaccacagcgtcgtctcgatagc 14767388
Query: 779 tgc 781
|||
Sbjct: 14767389 tgc 14767391
Score = 476 bits (240), Expect = e-131
Identities = 408/464 (87%)
Strand = Plus / Plus
Query: 1203 acgtcctccaccaccagccgggcctcctcctcccacccgccgcggttctgggccaccacc 1262
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct: 14770534 acgtcctccaccaccagcctcgcctcctcctcccaacccgcgcggttctgggccaccacc 14770593
Query: 1263 ttgttggtgaagaaggggacggtcatgatgcgccgcatcttgcgccagtggtcgccgtac 1322
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 14770594 ttgttggtgaagaagggcaccgtcatgatccgccgcatcttgcgccagtggtcgccgtac 14770653
Query: 1323 accgtgaacaccatgtcctgccccttgcccgtgaagatgtcgaacaccacgttgcgggtg 1382
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 14770654 acggtgaacaccatgtcctgccccttcccggtgaagatgtcgaacaccacgttgcgggtg 14770713
Query: 1383 cgggagccgaactccacgccctgcgtgtggagcacctccttggccagctccggggtcgac 1442
|||||||||||||| |||||||| |||||||||||||||||||| || |||||| | |||
Sbjct: 14770714 cgggagccgaactcgacgccctgggtgtggagcacctccttggcgaggtccgggctggac 14770773
Query: 1443 accaccaccaggttgcgcacgcccatgcgcagcaggaagatgtcgccgaaccgcttcgcc 1502
||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||
Sbjct: 14770774 accaccaccaggttgcggacgcccatgcggaggaggaggatgtcgccgaaccgccgcgcc 14770833
Query: 1503 atgacaaacaggttgcggtggttcaggtcgtcgcccacctgcagccagtttcccaccacg 1562
| | | ||||||||||||||| ||||||||||| ||||| |||||||| || || | |
Sbjct: 14770834 agcgccatcaggttgcggtggttgaggtcgtcgccgacctggagccagttgccgacgatg 14770893
Query: 1563 ggggcgcccgggggccccggtgggaggcggtaccgcttgccggtcagcttggccacggcg 1622
|| ||||| | ||| || || ||||||||| || ||| ||||| ||||||||||| |
Sbjct: 14770894 ggcgcgccggcggggccgggcgggaggcggagcctcttcccggtgagcttggccaccact 14770953
Query: 1623 atggccaccacagccgcggcgaacaggcccagcagggccttctc 1666
| ||||| ||| ||||| ||||||||||||| ||| |||||||
Sbjct: 14770954 agggccagcaccgccgccacgaacaggcccaggaggaccttctc 14770997
Score = 325 bits (164), Expect = 4e-086
Identities = 230/252 (91%)
Strand = Plus / Plus
Query: 899 cttgcgctcctgtacgaagttgtcctcgaagaccttcatgcggcgcgtcttgaggtcgtg 958
|||||| ||||| ||||||| ||||||||||| ||||||||| | | |||||| | |||
Sbjct: 14770230 cttgcgttcctggacgaagtggtcctcgaagagcttcatgcgctgggacttgagctggtg 14770289
Query: 959 gcagcggttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagtt 1018
|||||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 14770290 gcagcgtgcgaggtagcggcggaggaaggggcggaggacggggatgaagtcaccgtagtt 14770349
Query: 1019 gtactcgaagctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaa 1078
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 14770350 gtactcgaagctctgcgagaggcggctgcgctccgcgttgaaggccttgagcttgttgaa 14770409
Query: 1079 gagcgggtcgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgta 1138
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14770410 gagcgggtcgtccacgctgtcgaaacggcggtcgaacatgatgcggaacatgtcgttgta 14770469
Query: 1139 catcatcagctg 1150
||||||||||||
Sbjct: 14770470 catcatcagctg 14770481
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Plus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14768478 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 14768537
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 14768538 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 14768590
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 24126221 gagcacctccttggcgagctccgacgtcgacaccaccac 24126183
>gb|CA754722.1|CA754722 BR030005000_PLATE_G07_55_055.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030005000_PLATE_G07_55_055.ab1 similar to cinnamic
acid 4-hydroxylase [Sorghum bicolor], mRNA sequence
Length = 626
Score = 543 bits (274), Expect = e-151
Identities = 492/564 (87%), Gaps = 3/564 (0%)
Strand = Plus / Minus
Query: 179 ctaggcctcgaggggcttgcagacgatggtggcatgcttggcgatctggttgctgaactg 238
|||||| |||| |||||||||||||| |||||| |||||| ||||||||||||||||||
Sbjct: 563 ctaggcgtcgatgggcttgcagacgacggtggcgtgcttgaggatctggttgctgaactg 504
Query: 239 gccgggcttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagtt 298
|||||||||||| |||||||| | |||||||| ||| |||||||||||||| | |||| |
Sbjct: 503 gccgggcttctcggtggtgtccaccttgtccatcccgggcggcggcagcaggtcgaagct 444
Query: 299 ctgcaccagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggca 358
||| || || ||||| || ||||| |||||||| |||||||||||||||||||| |||||
Sbjct: 443 ctggacgaggcggccgagcgtgatcccgatgatgggcagcgcgaggatgatcccggggca 384
Query: 359 gctccggcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacgga 418
||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 gctgcggcggccgacgccgaagggcacgaagcggaagtcgttgccgtgcgcctccacggc 324
Query: 419 cttctcctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggg 478
|||||||||||||||||| | ||| |||| ||||||||||| |||||||||| ||||||
Sbjct: 323 cttctcctcctccaggaacctctccggcctaaactcgtcggggcgcacccaccgcttggg 264
Query: 479 gtcgttggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagcc 538
|||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 263 gtcgttggcgaggaaccacgcgttcaccaggatcttggactcggcggggatgtcgtagcc 204
Query: 539 ggcgagcttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcag 598
|||||||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 203 ggcgagcttgccgtcggcgaggttcatgtgcggcaccagcagcgggatcgccatgcgcaa 144
Query: 599 gcggagcgtctccttgacgatggcctgaaggtaggggaggcgctcgaggtccggctccgt 658
|| ||||||||||| || | ||||| ||||| || || ||||| ||||||||||||||
Sbjct: 143 ccgcagcgtctccttcaccaccgcctgcaggtacggcagccgctccaggtccggctccgt 84
Query: 659 cacaggcacgccggcgcccagcaccgaggcgagctcctcccggagcttgtgctggatggc 718
||| | | ||| ||||||||||||| || | ||||||||| | ||| |||||||
Sbjct: 83 caccgccgcgc---cgcccagcaccgacgccatctcctcccgcaccttcgactggatgct 27
Query: 719 cgggtggttcaccagctcggcgat 742
|||||||||||||||||| |||||
Sbjct: 26 cgggtggttcaccagctccgcgat 3
>gb|AACV01012893.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012893, whole
genome shotgun sequence
Length = 103032
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Minus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 14695 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 14636
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 14635 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 14576
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 14575 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 14516
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 14515 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 14456
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 14455 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 14396
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 14395 cgtcgccgacctgcagccagtt 14374
Score = 272 bits (137), Expect = 6e-070
Identities = 329/393 (83%)
Strand = Plus / Minus
Query: 245 cttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcac 304
|||||| |||||||||| | ||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 15842 cttctcggtggtgtcgaccctgtccttcccgggcggcggcagcagctcgaagttctggac 15783
Query: 305 cagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccg 364
|| ||||| | ||||| ||||| ||| ||||||||||||| ||| || |||||||||||
Sbjct: 15782 gaggcggccgatggtgacgccgaggatgggcagcgcgaggacgatgccggggcagctccg 15723
Query: 365 gcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctc 424
|| ||| | || | |||| | | | |||||||||||||| |||||| ||| | ||||
Sbjct: 15722 ccgcccggcgccggacggcaggtacctgaagtcgttgccgttggcctcgacgttcctctc 15663
Query: 425 ctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgtt 484
|||||| ||||| | ||| ||||||||||| || |||||| ||||| | |||||||||
Sbjct: 15662 ctcctcgaggaacctctccggccggaactcctccggccgccgccaccgcccggggtcgtt 15603
Query: 485 ggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgag 544
||||||| |||| || |||||||| | |||| ||||||||||||| |||| ||||||||
Sbjct: 15602 ggcgaggtaccacgcgttgacgagcaccttgctctcggcggggatgccgtacccggcgag 15543
Query: 545 cttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggag 604
|| | ||||| |||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 15542 ctcggcgtcgcggaggttcatgtgcggcaccagcagcgggatggccatgcgcagccggag 15483
Query: 605 cgtctccttgacgatggcctgaaggtaggggag 637
|||||||||||| | |||||| |||||||||||
Sbjct: 15482 cgtctccttgaccacggcctgcaggtaggggag 15450
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Minus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 14934 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 14875
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 14874 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 14815
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 14814 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 14755
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 14754 gctgcaggcggcggcgg 14738
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 15223 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 15164
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 15163 tccaggatgtgatcaatggcgca 15141
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 15365 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 15306
Query: 780 gc 781
||
Sbjct: 15305 gc 15304
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Plus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 35037118 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 35037177
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 35037178 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 35037237
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 35037238 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 35037297
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 35037298 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 35037357
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 35037358 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 35037417
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 35037418 cgtcgccgacctgcagccagtt 35037439
Score = 272 bits (137), Expect = 6e-070
Identities = 329/393 (83%)
Strand = Plus / Plus
Query: 245 cttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcac 304
|||||| |||||||||| | ||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 35035971 cttctcggtggtgtcgaccctgtccttcccgggcggcggcagcagctcgaagttctggac 35036030
Query: 305 cagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccg 364
|| ||||| | ||||| ||||| ||| ||||||||||||| ||| || |||||||||||
Sbjct: 35036031 gaggcggccgatggtgacgccgaggatgggcagcgcgaggacgatgccggggcagctccg 35036090
Query: 365 gcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctc 424
|| ||| | || | |||| | | | |||||||||||||| |||||| ||| | ||||
Sbjct: 35036091 ccgcccggcgccggacggcaggtacctgaagtcgttgccgttggcctcgacgttcctctc 35036150
Query: 425 ctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgtt 484
|||||| ||||| | ||| ||||||||||| || |||||| ||||| | |||||||||
Sbjct: 35036151 ctcctcgaggaacctctccggccggaactcctccggccgccgccaccgcccggggtcgtt 35036210
Query: 485 ggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgag 544
||||||| |||| || |||||||| | |||| ||||||||||||| |||| ||||||||
Sbjct: 35036211 ggcgaggtaccacgcgttgacgagcaccttgctctcggcggggatgccgtacccggcgag 35036270
Query: 545 cttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggag 604
|| | ||||| |||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 35036271 ctcggcgtcgcggaggttcatgtgcggcaccagcagcgggatggccatgcgcagccggag 35036330
Query: 605 cgtctccttgacgatggcctgaaggtaggggag 637
|||||||||||| | |||||| |||||||||||
Sbjct: 35036331 cgtctccttgaccacggcctgcaggtaggggag 35036363
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 35036879 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 35036938
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 35036939 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 35036998
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 35036999 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 35037058
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 35037059 gctgcaggcggcggcgg 35037075
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 35036590 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 35036649
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 35036650 tccaggatgtgatcaatggcgca 35036672
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 35036448 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 35036507
Query: 780 gc 781
||
Sbjct: 35036508 gc 35036509
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Plus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 9484501 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 9484560
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9484561 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 9484620
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 9484621 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 9484680
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 9484681 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 9484740
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 9484741 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 9484800
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 9484801 cgtcgccgacctgcagccagtt 9484822
Score = 272 bits (137), Expect = 6e-070
Identities = 329/393 (83%)
Strand = Plus / Plus
Query: 245 cttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcac 304
|||||| |||||||||| | ||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 9483354 cttctcggtggtgtcgaccctgtccttcccgggcggcggcagcagctcgaagttctggac 9483413
Query: 305 cagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccg 364
|| ||||| | ||||| ||||| ||| ||||||||||||| ||| || |||||||||||
Sbjct: 9483414 gaggcggccgatggtgacgccgaggatgggcagcgcgaggacgatgccggggcagctccg 9483473
Query: 365 gcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctc 424
|| ||| | || | |||| | | | |||||||||||||| |||||| ||| | ||||
Sbjct: 9483474 ccgcccggcgccggacggcaggtacctgaagtcgttgccgttggcctcgacgttcctctc 9483533
Query: 425 ctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgtt 484
|||||| ||||| | ||| ||||||||||| || |||||| ||||| | |||||||||
Sbjct: 9483534 ctcctcgaggaacctctccggccggaactcctccggccgccgccaccgcccggggtcgtt 9483593
Query: 485 ggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgag 544
||||||| |||| || |||||||| | |||| ||||||||||||| |||| ||||||||
Sbjct: 9483594 ggcgaggtaccacgcgttgacgagcaccttgctctcggcggggatgccgtacccggcgag 9483653
Query: 545 cttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggag 604
|| | ||||| |||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 9483654 ctcggcgtcgcggaggttcatgtgcggcaccagcagcgggatggccatgcgcagccggag 9483713
Query: 605 cgtctccttgacgatggcctgaaggtaggggag 637
|||||||||||| | |||||| |||||||||||
Sbjct: 9483714 cgtctccttgaccacggcctgcaggtaggggag 9483746
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 9484262 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 9484321
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 9484322 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 9484381
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 9484382 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 9484441
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 9484442 gctgcaggcggcggcgg 9484458
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 9483973 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 9484032
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 9484033 tccaggatgtgatcaatggcgca 9484055
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 9483831 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 9483890
Query: 780 gc 781
||
Sbjct: 9483891 gc 9483892
>dbj|AP003302.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0703B11
Length = 144074
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Plus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 676 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 735
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 736 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 795
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 796 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 855
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 856 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 915
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 916 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 975
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 976 cgtcgccgacctgcagccagtt 997
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 437 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 496
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 497 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 556
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 557 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 616
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 617 gctgcaggcggcggcgg 633
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 148 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 207
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 208 tccaggatgtgatcaatggcgca 230
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 6 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 65
Query: 780 gc 781
||
Sbjct: 66 gc 67
>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1529_G03
Length = 100635
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Plus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 85812 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 85871
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 85872 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 85931
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 85932 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 85991
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 85992 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 86051
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 86052 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 86111
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 86112 cgtcgccgacctgcagccagtt 86133
Score = 272 bits (137), Expect = 6e-070
Identities = 329/393 (83%)
Strand = Plus / Plus
Query: 245 cttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcac 304
|||||| |||||||||| | ||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 84665 cttctcggtggtgtcgaccctgtccttcccgggcggcggcagcagctcgaagttctggac 84724
Query: 305 cagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccg 364
|| ||||| | ||||| ||||| ||| ||||||||||||| ||| || |||||||||||
Sbjct: 84725 gaggcggccgatggtgacgccgaggatgggcagcgcgaggacgatgccggggcagctccg 84784
Query: 365 gcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctc 424
|| ||| | || | |||| | | | |||||||||||||| |||||| ||| | ||||
Sbjct: 84785 ccgcccggcgccggacggcaggtacctgaagtcgttgccgttggcctcgacgttcctctc 84844
Query: 425 ctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgtt 484
|||||| ||||| | ||| ||||||||||| || |||||| ||||| | |||||||||
Sbjct: 84845 ctcctcgaggaacctctccggccggaactcctccggccgccgccaccgcccggggtcgtt 84904
Query: 485 ggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgag 544
||||||| |||| || |||||||| | |||| ||||||||||||| |||| ||||||||
Sbjct: 84905 ggcgaggtaccacgcgttgacgagcaccttgctctcggcggggatgccgtacccggcgag 84964
Query: 545 cttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggag 604
|| | ||||| |||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 84965 ctcggcgtcgcggaggttcatgtgcggcaccagcagcgggatggccatgcgcagccggag 85024
Query: 605 cgtctccttgacgatggcctgaaggtaggggag 637
|||||||||||| | |||||| |||||||||||
Sbjct: 85025 cgtctccttgaccacggcctgcaggtaggggag 85057
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 85573 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 85632
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 85633 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 85692
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 85693 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 85752
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 85753 gctgcaggcggcggcgg 85769
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 85284 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 85343
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 85344 tccaggatgtgatcaatggcgca 85366
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 85142 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 85201
Query: 780 gc 781
||
Sbjct: 85202 gc 85203
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Minus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 773205 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 773146
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 773145 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 773086
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 773085 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 773026
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 773025 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 772966
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 772965 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 772906
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 772905 cgtcgccgacctgcagccagtt 772884
Score = 272 bits (137), Expect = 6e-070
Identities = 329/393 (83%)
Strand = Plus / Minus
Query: 245 cttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcac 304
|||||| |||||||||| | ||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 774352 cttctcggtggtgtcgaccctgtccttcccgggcggcggcagcagctcgaagttctggac 774293
Query: 305 cagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccg 364
|| ||||| | ||||| ||||| ||| ||||||||||||| ||| || |||||||||||
Sbjct: 774292 gaggcggccgatggtgacgccgaggatgggcagcgcgaggacgatgccggggcagctccg 774233
Query: 365 gcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctc 424
|| ||| | || | |||| | | | |||||||||||||| |||||| ||| | ||||
Sbjct: 774232 ccgcccggcgccggacggcaggtacctgaagtcgttgccgttggcctcgacgttcctctc 774173
Query: 425 ctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgtt 484
|||||| ||||| | ||| ||||||||||| || |||||| ||||| | |||||||||
Sbjct: 774172 ctcctcgaggaacctctccggccggaactcctccggccgccgccaccgcccggggtcgtt 774113
Query: 485 ggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgag 544
||||||| |||| || |||||||| | |||| ||||||||||||| |||| ||||||||
Sbjct: 774112 ggcgaggtaccacgcgttgacgagcaccttgctctcggcggggatgccgtacccggcgag 774053
Query: 545 cttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggag 604
|| | ||||| |||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 774052 ctcggcgtcgcggaggttcatgtgcggcaccagcagcgggatggccatgcgcagccggag 773993
Query: 605 cgtctccttgacgatggcctgaaggtaggggag 637
|||||||||||| | |||||| |||||||||||
Sbjct: 773992 cgtctccttgaccacggcctgcaggtaggggag 773960
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Minus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 773444 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 773385
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 773384 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 773325
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 773324 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 773265
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 773264 gctgcaggcggcggcgg 773248
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 773733 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 773674
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 773673 tccaggatgtgatcaatggcgca 773651
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 773875 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 773816
Query: 780 gc 781
||
Sbjct: 773815 gc 773814
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Minus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 773205 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 773146
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 773145 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 773086
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 773085 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 773026
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 773025 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 772966
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 772965 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 772906
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 772905 cgtcgccgacctgcagccagtt 772884
Score = 272 bits (137), Expect = 6e-070
Identities = 329/393 (83%)
Strand = Plus / Minus
Query: 245 cttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcac 304
|||||| |||||||||| | ||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 774352 cttctcggtggtgtcgaccctgtccttcccgggcggcggcagcagctcgaagttctggac 774293
Query: 305 cagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccg 364
|| ||||| | ||||| ||||| ||| ||||||||||||| ||| || |||||||||||
Sbjct: 774292 gaggcggccgatggtgacgccgaggatgggcagcgcgaggacgatgccggggcagctccg 774233
Query: 365 gcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctc 424
|| ||| | || | |||| | | | |||||||||||||| |||||| ||| | ||||
Sbjct: 774232 ccgcccggcgccggacggcaggtacctgaagtcgttgccgttggcctcgacgttcctctc 774173
Query: 425 ctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgtt 484
|||||| ||||| | ||| ||||||||||| || |||||| ||||| | |||||||||
Sbjct: 774172 ctcctcgaggaacctctccggccggaactcctccggccgccgccaccgcccggggtcgtt 774113
Query: 485 ggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgag 544
||||||| |||| || |||||||| | |||| ||||||||||||| |||| ||||||||
Sbjct: 774112 ggcgaggtaccacgcgttgacgagcaccttgctctcggcggggatgccgtacccggcgag 774053
Query: 545 cttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggag 604
|| | ||||| |||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 774052 ctcggcgtcgcggaggttcatgtgcggcaccagcagcgggatggccatgcgcagccggag 773993
Query: 605 cgtctccttgacgatggcctgaaggtaggggag 637
|||||||||||| | |||||| |||||||||||
Sbjct: 773992 cgtctccttgaccacggcctgcaggtaggggag 773960
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Minus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 773444 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 773385
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 773384 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 773325
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 773324 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 773265
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 773264 gctgcaggcggcggcgg 773248
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 773733 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 773674
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 773673 tccaggatgtgatcaatggcgca 773651
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Minus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 773875 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 773816
Query: 780 gc 781
||
Sbjct: 773815 gc 773814
Score = 46.1 bits (23), Expect = 0.062
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 606 gtctccttgacgatggcctgaaggtaggggaggcg 640
||||||||||||| || |||||||||||||||||
Sbjct: 10594291 gtctccttgacgacagcttgaaggtaggggaggcg 10594325
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 289 bits (146), Expect = 2e-075
Identities = 278/322 (86%)
Strand = Plus / Plus
Query: 1231 cctcccacccgccgcggttctgggccaccaccttgttggtgaagaaggggacggtcatga 1290
||||||||||| |||||| | | |||||||||| ||||||||| || || |||||||
Sbjct: 34956448 cctcccacccggcgcggtgccgctgcaccaccttgccggtgaagaacggcaccgtcatga 34956507
Query: 1291 tgcgccgcatcttgcgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgc 1350
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 34956508 tccgccgcatctttcgccagtggtcgccgtacacggtgaacaccatgtcctgccccttgc 34956567
Query: 1351 ccgtgaagatgtcgaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgt 1410
| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct: 34956568 cggtgaagatgtcgaacaccacgttgcgggtgcgcgacccgaactccaccccctgcgtgt 34956627
Query: 1411 ggagcacctccttggccagctccggggtcgacaccaccaccaggttgcgcacgcccatgc 1470
||||||||||| |||||| ||| | || |||||||||||||||||| ||||| |
Sbjct: 34956628 ggagcacctcccgcgccagcggcggcgaggagaccaccaccaggttgcgctgccccatcc 34956687
Query: 1471 gcagcaggaagatgtcgccgaaccgcttcgccatgacaaacaggttgcggtggttcaggt 1530
| || ||||||||||||||||||| | ||||| | ||||||||||||||| ||||
Sbjct: 34956688 ggaggaggaagatgtcgccgaacctccgcgccagcgccgccaggttgcggtggttgaggt 34956747
Query: 1531 cgtcgcccacctgcagccagtt 1552
||||||| ||||||||||||||
Sbjct: 34956748 cgtcgccgacctgcagccagtt 34956769
Score = 272 bits (137), Expect = 6e-070
Identities = 329/393 (83%)
Strand = Plus / Plus
Query: 245 cttctccgtggtgtcgatcttgtccagccccggcggcggcagcagctggaagttctgcac 304
|||||| |||||||||| | ||||| ||| |||||||||||||||| ||||||||| ||
Sbjct: 34955301 cttctcggtggtgtcgaccctgtccttcccgggcggcggcagcagctcgaagttctggac 34955360
Query: 305 cagccggcccagggtgatgccgatgataggcagcgcgaggatgatcccagggcagctccg 364
|| ||||| | ||||| ||||| ||| ||||||||||||| ||| || |||||||||||
Sbjct: 34955361 gaggcggccgatggtgacgccgaggatgggcagcgcgaggacgatgccggggcagctccg 34955420
Query: 365 gcggccgaccccaaagggcacgaagcggaagtcgttgccgtgggcctccacggacttctc 424
|| ||| | || | |||| | | | |||||||||||||| |||||| ||| | ||||
Sbjct: 34955421 ccgcccggcgccggacggcaggtacctgaagtcgttgccgttggcctcgacgttcctctc 34955480
Query: 425 ctcctccaggaagcgctcgggccggaactcgtcgggccgcacccacctcttggggtcgtt 484
|||||| ||||| | ||| ||||||||||| || |||||| ||||| | |||||||||
Sbjct: 34955481 ctcctcgaggaacctctccggccggaactcctccggccgccgccaccgcccggggtcgtt 34955540
Query: 485 ggcgaggaaccaggcattgacgaggatcttggactcggcggggatgtcgtagccggcgag 544
||||||| |||| || |||||||| | |||| ||||||||||||| |||| ||||||||
Sbjct: 34955541 ggcgaggtaccacgcgttgacgagcaccttgctctcggcggggatgccgtacccggcgag 34955600
Query: 545 cttgccgtcgttgaggttcatgtgggggaccagcagcgggatggccatgcgcaggcggag 604
|| | ||||| |||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 34955601 ctcggcgtcgcggaggttcatgtgcggcaccagcagcgggatggccatgcgcagccggag 34955660
Query: 605 cgtctccttgacgatggcctgaaggtaggggag 637
|||||||||||| | |||||| |||||||||||
Sbjct: 34955661 cgtctccttgaccacggcctgcaggtaggggag 34955693
Score = 224 bits (113), Expect = 1e-055
Identities = 176/197 (89%)
Strand = Plus / Plus
Query: 967 tgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactcga 1026
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 34956209 tgaggtagccgcggaggaaggggcggaggatggggatgaagtcgccgtagttgtactcga 34956268
Query: 1027 agctctgcgacaggcggctgcgctccgcgttgagcgccttgagcttgttgaagagcgggt 1086
||||||||| |||||||||||||| |||||||||||||||| | ||| |||||||
Sbjct: 34956269 agctctgcgcgaggcggctgcgctcgccgttgagcgccttgaggcggaggaacagcgggt 34956328
Query: 1087 cgtgctcgctgtcgaaccggcggtcgaacatgatgcggaacatgtcgttgtacatcatca 1146
||| | |||| ||||||||||||||||||||||||||| ||| || | |||||||||| |
Sbjct: 34956329 cgtccgcgctctcgaaccggcggtcgaacatgatgcggtacacgttgctgtacatcatga 34956388
Query: 1147 gctggaggcggcggcgg 1163
|||| ||||||||||||
Sbjct: 34956389 gctgcaggcggcggcgg 34956405
Score = 77.8 bits (39), Expect = 2e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 786 ttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcggcc 845
|||||||||||||| |||||||| |||||||| | ||||||||| |||||| || |||
Sbjct: 34955920 ttgatgttctcgacaatgtagagcacgttgtcctcgttgatctcccccttctgctgcgcc 34955979
Query: 846 tcgaggatgtgatccatggcgca 868
|| ||||||||||| ||||||||
Sbjct: 34955980 tccaggatgtgatcaatggcgca 34956002
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 722 gtggttcacc--agctcggcgatgccccactcgatcgaccacagtgtcgtctcgatcgct 779
|||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 34955778 gtggttcaccctagctccgcgatcgcccactccatcgaccacagcgtcgtctcgatcgct 34955837
Query: 780 gc 781
||
Sbjct: 34955838 gc 34955839
>gb|AQ256364.1|AQ256364 nbxb0016O01r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0016O01r, DNA sequence
Length = 607
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Minus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 114
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 113 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 61
>gb|AQ289078.1|AQ289078 nbxb0034K09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0034K09r, DNA sequence
Length = 855
Score = 200 bits (101), Expect = 2e-048
Identities = 110/113 (97%)
Strand = Plus / Minus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 114
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 113 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 61
>gb|AQ576280.1|AQ576280 nbxb0088L20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0088L20r, DNA sequence
Length = 830
Score = 194 bits (98), Expect = 1e-046
Identities = 109/113 (96%)
Strand = Plus / Minus
Query: 783 acgttgatgttctcgacgatgtagaggacgttgtcgtggttgatctcgcccttcctctcg 842
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 635 acgttgatgttctcgacgatgtagagnacgttgtcgtggttgatctcgcccttcctctcg 576
Query: 843 gcctcgaggatgtgatccatggcgcaccggatctcaccagtctgagccatcac 895
|||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 575 gcctcgaggatgtggtccatggcgcaccggatctcaccagtctgttccatcac 523
>dbj|AP004859.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1756_B04,
*** SEQUENCING IN PROGRESS ***
Length = 122864
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 90234 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 90175
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 90174 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 90115
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 90114 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 90072
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Plus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 73158 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 73217
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 73218 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 73277
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 73278 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 73320
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 90574 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 90515
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 90514 gaagctctgcgcgaggcggctgcgctc 90488
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 72818 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 72877
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 72878 gaagctctgcgcgaggcggctgcgctc 72904
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 90950 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 90891
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 90890 gcggccacgttgatgttctccacgatgtaga 90860
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 73371 cggtggttcaggtcgttgcccacctgcagccagtt 73405
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 91343 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 91284
Query: 393 aagtc 397
|||||
Sbjct: 91283 aagtc 91279
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 72152 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 72211
Query: 393 aagtc 397
|||||
Sbjct: 72212 aagtc 72216
>dbj|AK072588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132G16, full
insert sequence
Length = 1910
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 563 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 504
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 503 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 444
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 443 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 401
Score = 97.6 bits (49), Expect = 2e-017
Identities = 64/69 (92%)
Strand = Plus / Minus
Query: 983 gaaggggcggagcacggggatgaagtcgccgtagttgtactcgaagctctgcgacaggcg 1042
|||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 885 gaagggacggaggatggggatgaagtcgccgtagttgtactcgaagctctgcgcgaggcg 826
Query: 1043 gctgcgctc 1051
|||||||||
Sbjct: 825 gctgcgctc 817
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 1161 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 1102
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 1101 gcggccacgttgatgttctccacgatgtaga 1071
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 350 cggtggttcaggtcgttgcccacctgcagccagtt 316
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 1554 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 1495
Query: 393 aagtc 397
|||||
Sbjct: 1494 aagtc 1490
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1342_D02
Length = 125460
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 93111 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 93052
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 93051 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 92992
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 92991 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 92949
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Plus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 76035 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 76094
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 76095 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 76154
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 76155 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 76197
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 93451 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 93392
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 93391 gaagctctgcgcgaggcggctgcgctc 93365
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 75695 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 75754
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 75755 gaagctctgcgcgaggcggctgcgctc 75781
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 93827 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 93768
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 93767 gcggccacgttgatgttctccacgatgtaga 93737
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 75319 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 75378
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 75379 gcggccacgttgatgttctccacgatgtaga 75409
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 92898 cggtggttcaggtcgttgcccacctgcagccagtt 92864
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 94220 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 94161
Query: 393 aagtc 397
|||||
Sbjct: 94160 aagtc 94156
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 74926 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 74985
Query: 393 aagtc 397
|||||
Sbjct: 74986 aagtc 74990
>gb|AACV01004242.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004242, whole
genome shotgun sequence
Length = 37707
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Plus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 26869 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 26928
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 26929 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 26988
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 26989 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 27031
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 26529 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 26588
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 26589 gaagctctgcgcgaggcggctgcgctc 26615
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 26153 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 26212
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 26213 gcggccacgttgatgttctccacgatgtaga 26243
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 25760 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 25819
Query: 393 aagtc 397
|||||
Sbjct: 25820 aagtc 25824
>ref|XM_465538.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1602
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 458 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 399
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 398 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 339
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 338 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 296
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 798 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 739
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 738 gaagctctgcgcgaggcggctgcgctc 712
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 1055 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 996
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 995 gcggccacgttgatgttctccacgatgtaga 965
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 1448 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 1389
Query: 393 aagtc 397
|||||
Sbjct: 1388 aagtc 1384
>ref|XM_465542.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1910
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 563 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 504
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 503 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 444
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 443 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 401
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 903 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 844
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 843 gaagctctgcgcgaggcggctgcgctc 817
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 1160 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 1101
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 1100 gcggccacgttgatgttctccacgatgtaga 1070
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 350 cggtggttcaggtcgttgcccacctgcagccagtt 316
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 1553 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 1494
Query: 393 aagtc 397
|||||
Sbjct: 1493 aagtc 1489
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 1897358 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 1897299
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1897298 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 1897239
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 1897238 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 1897196
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Plus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 1880282 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 1880341
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 1880342 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 1880401
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 1880402 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 1880444
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 1897698 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 1897639
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 1897638 gaagctctgcgcgaggcggctgcgctc 1897612
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 1879942 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 1880001
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 1880002 gaagctctgcgcgaggcggctgcgctc 1880028
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 1898074 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 1898015
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 1898014 gcggccacgttgatgttctccacgatgtaga 1897984
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 1879566 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 1879625
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 1879626 gcggccacgttgatgttctccacgatgtaga 1879656
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 1897145 cggtggttcaggtcgttgcccacctgcagccagtt 1897111
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 1898467 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 1898408
Query: 393 aagtc 397
|||||
Sbjct: 1898407 aagtc 1898403
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 1879173 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 1879232
Query: 393 aagtc 397
|||||
Sbjct: 1879233 aagtc 1879237
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Plus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 2046408 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 2046467
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 2046468 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 2046527
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 2046528 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 2046570
Score = 167 bits (84), Expect = 2e-038
Identities = 145/164 (88%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgcccc-ttgcccgtgaagatgtc 1363
|||||||||||||||||| | |||||||||||||| || || ||| | ||||||||||
Sbjct: 2063480 cgccagtggtcgccgtactcggtgaacaccatgtcgggcgccgttggcgttgaagatgtc 2063421
Query: 1364 gaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctcctt 1423
||| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 2063420 gaagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgt 2063361
Query: 1424 ggccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 2063360 cgccagcttcgggtccgacaccaccaccaggttgcgcacgccca 2063317
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 2046068 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 2046127
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 2046128 gaagctctgcgcgaggcggctgcgctc 2046154
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 2045692 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 2045751
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 2045752 gcggccacgttgatgttctccacgatgtaga 2045782
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 2063266 cggtggttcaggtcgttgcccacctgcagccagtt 2063232
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 2063693 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 2063634
Query: 393 aagtc 397
|||||
Sbjct: 2063633 aagtc 2063629
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 2045299 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 2045358
Query: 393 aagtc 397
|||||
Sbjct: 2045359 aagtc 2045363
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Plus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 15499472 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 15499531
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 15499532 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 15499591
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 15499592 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 15499634
Score = 167 bits (84), Expect = 2e-038
Identities = 145/164 (88%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgcccc-ttgcccgtgaagatgtc 1363
|||||||||||||||||| | |||||||||||||| || || ||| | ||||||||||
Sbjct: 15516544 cgccagtggtcgccgtactcggtgaacaccatgtcgggcgccgttggcgttgaagatgtc 15516485
Query: 1364 gaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctcctt 1423
||| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 15516484 gaagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgt 15516425
Query: 1424 ggccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 15516424 cgccagcttcgggtccgacaccaccaccaggttgcgcacgccca 15516381
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 15499132 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 15499191
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 15499192 gaagctctgcgcgaggcggctgcgctc 15499218
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 15498756 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 15498815
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 15498816 gcggccacgttgatgttctccacgatgtaga 15498846
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 15516330 cggtggttcaggtcgttgcccacctgcagccagtt 15516296
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 15516757 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 15516698
Query: 393 aagtc 397
|||||
Sbjct: 15516697 aagtc 15516693
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 15498363 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 15498422
Query: 393 aagtc 397
|||||
Sbjct: 15498423 aagtc 15498427
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 15835171 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 15835112
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 15835111 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 15835052
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 15835051 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 15835009
Score = 172 bits (87), Expect = 4e-040
Identities = 144/163 (88%)
Strand = Plus / Plus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgccccttgcccgtgaagatgtcg 1364
|||||||||||||||||| | |||||||||||||| || ||| | ||||||||||||
Sbjct: 15818095 cgccagtggtcgccgtactcggtgaacaccatgtcggcgccgttggcggtgaagatgtcg 15818154
Query: 1365 aacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctccttg 1424
|| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 15818155 aagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgtc 15818214
Query: 1425 gccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 15818215 gccagcttcgggtccgacaccaccaccaggttgcgcacgccca 15818257
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Minus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 15835511 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 15835452
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 15835451 gaagctctgcgcgaggcggctgcgctc 15835425
Score = 109 bits (55), Expect = 5e-021
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 965 gttgaggtagccgcggaggaaggggcggagcacggggatgaagtcgccgtagttgtactc 1024
|||||||||||| || | |||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 15817755 gttgaggtagccccgcaagaagggacggaggatggggatgaagtcgccgtagttgtactc 15817814
Query: 1025 gaagctctgcgacaggcggctgcgctc 1051
||||||||||| ||||||||||||||
Sbjct: 15817815 gaagctctgcgcgaggcggctgcgctc 15817841
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Minus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 15835887 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 15835828
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 15835827 gcggccacgttgatgttctccacgatgtaga 15835797
Score = 69.9 bits (35), Expect = 4e-009
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 717 gccgggtggttcaccagctcggcgatgccccactcgatcgaccacagtgtcgtctcgatc 776
||||||||||| || | |||||| | |||||||||| ||||| || |||||||||||
Sbjct: 15817379 gccgggtggttgacgacctcggccagcgcccactcgatggaccagagcgtcgtctcgatg 15817438
Query: 777 gctgcgacgttgatgttctcgacgatgtaga 807
|| || |||||||||||||| ||||||||||
Sbjct: 15817439 gcggccacgttgatgttctccacgatgtaga 15817469
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 15834958 cggtggttcaggtcgttgcccacctgcagccagtt 15834924
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 15836280 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 15836221
Query: 393 aagtc 397
|||||
Sbjct: 15836220 aagtc 15836216
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 15816986 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 15817045
Query: 393 aagtc 397
|||||
Sbjct: 15817046 aagtc 15817050
>gb|AACV01004243.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004243, whole
genome shotgun sequence
Length = 6181
Score = 167 bits (84), Expect = 2e-038
Identities = 145/164 (88%), Gaps = 1/164 (0%)
Strand = Plus / Minus
Query: 1305 cgccagtggtcgccgtacaccgtgaacaccatgtcctgcccc-ttgcccgtgaagatgtc 1363
|||||||||||||||||| | |||||||||||||| || || ||| | ||||||||||
Sbjct: 6134 cgccagtggtcgccgtactcggtgaacaccatgtcgggcgccgttggcgttgaagatgtc 6075
Query: 1364 gaacaccacgttgcgggtgcgggagccgaactccacgccctgcgtgtggagcacctcctt 1423
||| || |||||||| | |||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 6074 gaagacgacgttgcgcgggcgggagccgaactccacgccctgcgtgtgcagcacctccgt 6015
Query: 1424 ggccagctccggggtcgacaccaccaccaggttgcgcacgccca 1467
||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 6014 cgccagcttcgggtccgacaccaccaccaggttgcgcacgccca 5971
Score = 61.9 bits (31), Expect = 1e-006
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagccagtt 1552
|||||||||||||||| ||||||||||||||||||
Sbjct: 5920 cggtggttcaggtcgttgcccacctgcagccagtt 5886
>gb|AACV01004244.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004244,
whole genome shotgun sequence
Length = 19713
Score = 58.0 bits (29), Expect = 2e-005
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 333 ggcagcgcgaggatgatcccagggcagctccggcggccgaccccaaagggcacgaagcgg 392
|||||||| ||||||||||| |||||||| |||||||| || || ||||||| ||| | |
Sbjct: 66 ggcagcgccaggatgatccccgggcagctgcggcggcccacgccgaagggcaggaacctg 7
Query: 393 aagtc 397
|||||
Sbjct: 6 aagtc 2
>gb|CB640809.1|CB640809 OSJNEa16H24.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa16H24 5', mRNA sequence
Length = 592
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 316 gagcacctccttggcgagctccgacgtcgacaccaccac 278
>gb|CB647738.1|CB647738 OSJNEb10M18.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10M18 5', mRNA sequence
Length = 742
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 314 gagcacctccttggcgagctccgacgtcgacaccaccac 276
>gb|AC108505.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ2086_B07,
*** SEQUENCING IN PROGRESS ***, 4 ordered pieces
Length = 79991
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 72893 gagcacctccttggcgagctccgacgtcgacaccaccac 72855
>dbj|AK099695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074G15, full
insert sequence
Length = 1905
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 333 gagcacctccttggcgagctccgacgtcgacaccaccac 295
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03,
complete sequence
Length = 121466
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 12460 gagcacctccttggcgagctccgacgtcgacaccaccac 12422
>gb|AACV01012465.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012465, whole
genome shotgun sequence
Length = 4314
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 4015 gagcacctccttggcgagctccgacgtcgacaccaccac 4053
>ref|NT_107214.1| Oryza sativa (japonica cultivar-group)
Length = 1031295
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 516173 gagcacctccttggcgagctccgacgtcgacaccaccac 516135
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 54.0 bits (27), Expect = 3e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||||||||
Sbjct: 6504684 gagcacctccttggcgagctccgacgtcgacaccaccac 6504646
>gb|AU093333.1|AU093333 AU093333 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C62026, mRNA sequence
Length = 342
Score = 50.1 bits (25), Expect = 0.004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 1518 cggtggttcaggtcgtcgcccacctgcagcca 1549
|||||||| ||||||| |||||||||||||||
Sbjct: 294 cggtggttnaggtcgttgcccacctgcagcca 263
>gb|C19435.2|C19435 C19435 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E10415, mRNA sequence
Length = 618
Score = 46.1 bits (23), Expect = 0.062
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 523 cggggatgtcgtagccggcgagcttgc 549
|||||| ||||||||||||||||||||
Sbjct: 313 cggggacgtcgtagccggcgagcttgc 287
>gb|CB638653.1|CB638653 OSJNEa07C22.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa07C22 5', mRNA sequence
Length = 504
Score = 46.1 bits (23), Expect = 0.062
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1412 gagcacctccttggccagctccggggtcgacaccaccac 1450
||||||||||||||| ||||||| ||||||||| ||||
Sbjct: 334 gagcacctccttggcgagctccgacgtcgacacccccac 296
>dbj|AP004726.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0486G02, ***
SEQUENCING IN PROGRESS ***
Length = 134765
Score = 46.1 bits (23), Expect = 0.062
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 606 gtctccttgacgatggcctgaaggtaggggaggcg 640
||||||||||||| || |||||||||||||||||
Sbjct: 84002 gtctccttgacgacagcttgaaggtaggggaggcg 84036
>dbj|AK058424.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-D12, full
insert sequence
Length = 1411
Score = 46.1 bits (23), Expect = 0.062
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 606 gtctccttgacgatggcctgaaggtaggggaggcg 640
||||||||||||| || |||||||||||||||||
Sbjct: 1197 gtctccttgacgacagcttgaaggtaggggaggcg 1163
>dbj|AK059089.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B08, full
insert sequence
Length = 1743
Score = 46.1 bits (23), Expect = 0.062
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 606 gtctccttgacgatggcctgaaggtaggggaggcg 640
||||||||||||| || |||||||||||||||||
Sbjct: 1197 gtctccttgacgacagcttgaaggtaggggaggcg 1163
>dbj|AK064758.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G11, full
insert sequence
Length = 1698
Score = 46.1 bits (23), Expect = 0.062
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 523 cggggatgtcgtagccggcgagcttgc 549
|||||| ||||||||||||||||||||
Sbjct: 1056 cggggacgtcgtagccggcgagcttgc 1030
>gb|AC137992.2| Oryza sativa chromosome 3 BAC OSJNBb0056B16 genomic sequence, complete
sequence
Length = 153247
Score = 46.1 bits (23), Expect = 0.062
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggc 461
||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 44472 tcctcctccgcgaaccgctccggccggaactcgtcgggc 44510
>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0036B02
Length = 168253
Score = 46.1 bits (23), Expect = 0.062
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 606 gtctccttgacgatggcctgaaggtaggggaggcg 640
||||||||||||| || |||||||||||||||||
Sbjct: 40382 gtctccttgacgacagcttgaaggtaggggaggcg 40416
>gb|AACV01006918.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006918, whole
genome shotgun sequence
Length = 5796
Score = 46.1 bits (23), Expect = 0.062
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 423 tcctcctccaggaagcgctcgggccggaactcgtcgggc 461
||||||||| ||| ||||| ||||||||||||||||||
Sbjct: 5229 tcctcctccgcgaaccgctccggccggaactcgtcgggc 5267
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,431,966
Number of Sequences: 438736
Number of extensions: 3431966
Number of successful extensions: 30207
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28676
Number of HSP's gapped (non-prelim): 1478
length of query: 1689
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1667
effective length of database: 2,790,767,724
effective search space: 4652209795908
effective search space used: 4652209795908
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)