BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521462.2.2
(1311 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK121850.1| Oryza sativa (japonica cultivar-group) cDNA... 228 6e-057
gb|AY224528.1| Oryza sativa (japonica cultivar-group) isola... 228 6e-057
ref|NM_187345.1| Oryza sativa (japonica cultivar-group), mRNA 228 6e-057
gb|CB667866.1|CB667866 OSJNEd15G13.r OSJNEd Oryza sativa (j... 212 4e-052
gb|CB650781.1|CB650781 OSJNEb15G22.f OSJNEb Oryza sativa (j... 188 5e-045
gb|CB654996.1|CB654996 OSJNEc07P17.f OSJNEc Oryza sativa (j... 188 5e-045
gb|CB656194.1|CB656194 OSJNEc10E04.f OSJNEc Oryza sativa (j... 188 5e-045
gb|CB662970.1|CB662970 OSJNEd07H10.f OSJNEd Oryza sativa (j... 188 5e-045
dbj|AK111555.1| Oryza sativa (japonica cultivar-group) cDNA... 188 5e-045
ref|NM_197780.1| Oryza sativa (japonica cultivar-group) put... 188 5e-045
gb|CB662971.1|CB662971 OSJNEd07H10.r OSJNEd Oryza sativa (j... 182 3e-043
gb|CB683257.1|CB683257 OSJNEf11G15.f OSJNEf Oryza sativa (j... 180 1e-042
gb|CB659259.1|CB659259 OSJNEc16B11.r OSJNEc Oryza sativa (j... 168 5e-039
dbj|AP003964.1| Oryza sativa (japonica cultivar-group) chro... 155 7e-035
dbj|AP003864.4| Oryza sativa (japonica cultivar-group) geno... 155 7e-035
gb|AACV01016278.1| Oryza sativa (japonica cultivar-group) c... 155 7e-035
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 155 7e-035
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 155 7e-035
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 155 7e-035
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 155 7e-035
gb|CB654950.1|CB654950 OSJNEc07O06.r OSJNEc Oryza sativa (j... 153 3e-034
gb|CV152500.1|CV152500 LS46-S.SEQ Cold stressed rice cDNA l... 147 2e-032
gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10... 147 2e-032
gb|AACV01022119.1| Oryza sativa (japonica cultivar-group) c... 147 2e-032
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 147 2e-032
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 147 2e-032
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 147 2e-032
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 147 2e-032
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 147 2e-032
gb|CB656195.1|CB656195 OSJNEc10E04.r OSJNEc Oryza sativa (j... 133 3e-028
gb|CB650782.1|CB650782 OSJNEb15G22.r OSJNEb Oryza sativa (j... 131 1e-027
gb|CB654997.1|CB654997 OSJNEc07P17.r OSJNEc Oryza sativa (j... 131 1e-027
gb|CB673754.1|CB673754 OSJNEe08H04.r OSJNEe Oryza sativa (j... 86 6e-014
gb|CV722889.1|CV722889 root--01-O01.g1 Rice root lambda pha... 86 6e-014
gb|AU183937.1|AU183937 AU183937 Rice cDNA from immature lea... 74 2e-010
gb|AU030812.1|AU030812 AU030812 Rice cDNA from immature lea... 70 3e-009
gb|AU095209.1|AU095209 AU095209 Rice cDNA from immature lea... 70 3e-009
gb|CB000323.1|CB000323 S345U_C12 Rice cold stress germinati... 70 3e-009
gb|CB659258.1|CB659258 OSJNEc16B11.f OSJNEc Oryza sativa (j... 70 3e-009
gb|AU095208.1|AU095208 AU095208 Rice cDNA from immature lea... 68 1e-008
gb|CB649444.1|CB649444 OSJNEb13F22.r OSJNEb Oryza sativa (j... 56 5e-005
gb|CB649443.1|CB649443 OSJNEb13F22.f OSJNEb Oryza sativa (j... 48 0.012
dbj|AK120690.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.048
gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) c... 46 0.048
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.048
ref|NM_189412.1| Oryza sativa (japonica cultivar-group), p... 46 0.048
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 46 0.048
dbj|AP004365.3| Oryza sativa (japonica cultivar-group) geno... 46 0.048
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.048
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.048
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.048
>dbj|AK121850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101L24, full
insert sequence
Length = 1630
Score = 228 bits (115), Expect = 6e-057
Identities = 424/527 (80%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 417 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 476
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 477 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 536
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 537 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 596
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
||| | |||||||| || ||||| ||||| || ||||| ||||| || || | || |||
Sbjct: 597 gatatcgaatcttctcacggtgacatgttcaccgaagaacaaaacgagctagtggagtca 656
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
||||| |||||| | ||||| ||||||||| || || ||| | || |||||||| ||
Sbjct: 657 gctgcagagatgttatatgggctgattcatgcacgatacattttgaccagtaaaggattg 716
Query: 724 tccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgc 783
| ||||||||||| ||||||| ||| ||| || || |||||||| ||||| |||||
Sbjct: 717 gctgcaatgctggagaagtacaaaaactatgattttggaagatgcccacgagtttattgc 776
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
| || ||||| || | || ||||| ||||| ||| | | || || ||||| ||||||
Sbjct: 777 tgtggtcaaccctgtttaccagttggacaatcagatatacaccgatctagtactgtgaag 836
Query: 844 atttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatc 903
|| |||||||| | ||||||||||||||| |||| | ||||| || | | ||||||||
Sbjct: 837 atatactgccccaagtgtgaagacatctactatccacggtccaagtaccaaggcaacatc 896
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgac 950
||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 897 gacggcgcatactttgggacaacattcccgcacctgtttctgatgac 943
>gb|AY224528.1| Oryza sativa (japonica cultivar-group) isolate 21042 possible
protein kinase CK2 regulatory subunit mRNA, partial cds
Length = 735
Score = 228 bits (115), Expect = 6e-057
Identities = 424/527 (80%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 130 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 189
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 190 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 249
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 250 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 309
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
||| | |||||||| || ||||| ||||| || ||||| ||||| || || | || |||
Sbjct: 310 gatatcgaatcttctcacggtgacatgttcaccgaagaacaaaacgagctagtggagtca 369
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
||||| |||||| | ||||| ||||||||| || || ||| | || |||||||| ||
Sbjct: 370 gctgcagagatgttatatgggctgattcatgcacgatacattttgaccagtaaaggattg 429
Query: 724 tccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgc 783
| ||||||||||| ||||||| ||| ||| || || |||||||| ||||| |||||
Sbjct: 430 gctgcaatgctggagaagtacaaaaactatgattttggaagatgcccacgagtttattgc 489
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
| || ||||| || | || ||||| ||||| ||| | | || || ||||| ||||||
Sbjct: 490 tgtggtcaaccctgtttaccagttggacaatcagatatacaccgatctagtactgtgaag 549
Query: 844 atttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatc 903
|| |||||||| | ||||||||||||||| |||| | ||||| || | | ||||||||
Sbjct: 550 atatactgccccaagtgtgaagacatctactatccacggtccaagtaccaaggcaacatc 609
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgac 950
||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 610 gacggcgcatactttgggacaacattcccgcacctgtttctgatgac 656
>ref|NM_187345.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 867
Score = 228 bits (115), Expect = 6e-057
Identities = 424/527 (80%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 262 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 321
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 322 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 381
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 382 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 441
Query: 604 gatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatca 663
||| | |||||||| || ||||| ||||| || ||||| ||||| || || | || |||
Sbjct: 442 gatatcgaatcttctcacggtgacatgttcaccgaagaacaaaacgagctagtggagtca 501
Query: 664 gctgctgagatgctctatggattgattcatgttcggtatattattacaagtaaagggctg 723
||||| |||||| | ||||| ||||||||| || || ||| | || |||||||| ||
Sbjct: 502 gctgcagagatgttatatgggctgattcatgcacgatacattttgaccagtaaaggattg 561
Query: 724 tccgcaatgctggataagtacaggaacgttgagttcggcagatgccctcgagtgaattgc 783
| ||||||||||| ||||||| ||| ||| || || |||||||| ||||| |||||
Sbjct: 562 gctgcaatgctggagaagtacaaaaactatgattttggaagatgcccacgagtttattgc 621
Query: 784 agcggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaag 843
| || ||||| || | || ||||| ||||| ||| | | || || ||||| ||||||
Sbjct: 622 tgtggtcaaccctgtttaccagttggacaatcagatatacaccgatctagtactgtgaag 681
Query: 844 atttactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatc 903
|| |||||||| | ||||||||||||||| |||| | ||||| || | | ||||||||
Sbjct: 682 atatactgccccaagtgtgaagacatctactatccacggtccaagtaccaaggcaacatc 741
Query: 904 gacgggacttactttgggacaacattcccccacttgttcctgatgac 950
||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 742 gacggcgcatactttgggacaacattcccgcacctgtttctgatgac 788
>gb|CB667866.1|CB667866 OSJNEd15G13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15G13 3', mRNA sequence
Length = 841
Score = 212 bits (107), Expect = 4e-052
Identities = 368/455 (80%)
Strand = Plus / Minus
Query: 496 aatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgtggg 555
|||||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 814 aatgaattcttctgtgaggttgatgatgattatatacaagatgacttcaacctctgtggg 755
Query: 556 ctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaatct 615
|| |||| ||||||||||||||||| ||||| |||||||| || |||||| | ||||||
Sbjct: 754 cttagcagtcaagttccatattatgattatgctcttgatctcattttagatatcgaatct 695
Query: 616 tcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatg 675
|| || ||||| ||||| || ||||| ||||| || || | || |||||||| ||||||
Sbjct: 694 tctcacggtgacatgttcaccgaagaacaaaacgagctagtggagtcagctgcagagatg 635
Query: 676 ctctatggattgattcatgttcggtatattattacaagtaaagggctgtccgcaatgctg 735
| ||||| ||||||||| || || ||| | || |||||||| || | |||||||||
Sbjct: 634 ttatatgggctgattcatgcacgatacattttgaccagtaaaggattggctgcaatgctg 575
Query: 736 gataagtacaggaacgttgagttcggcagatgccctcgagtgaattgcagcggccaacca 795
|| ||||||| ||| ||| || || |||||||| ||||| ||||| | || |||||
Sbjct: 574 gagaagtacaaaaactatgattttggaagatgcccacgagtttattgctgtggtcaaccc 515
Query: 796 tgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatttactgccct 855
|| | || ||||| ||||| ||| | | || || ||||| |||||||| ||||||||
Sbjct: 514 tgtttaccagttggacaatcagatatacaccgatctagtactgtgaagatatactgcccc 455
Query: 856 agatgtgaagacatctacactccaagatccaaatatctaagcaacatcgacgggacttac 915
| ||||||||||||||| |||| | ||||| || | | ||||||||||||| | |||
Sbjct: 454 aagtgtgaagacatctactatccacggtccaagtaccaaggcaacatcgacggcgcatac 395
Query: 916 tttgggacaacattcccccacttgttcctgatgac 950
||||||||||||||||| ||| |||| ||||||||
Sbjct: 394 tttgggacaacattcccgcacctgtttctgatgac 360
>gb|CB650781.1|CB650781 OSJNEb15G22.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15G22 5', mRNA sequence
Length = 731
Score = 188 bits (95), Expect = 5e-045
Identities = 236/283 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 338 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 397
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 398 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 457
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 458 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 517
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 518 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 577
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 578 ttaattgagtcatctgcagagatgctgtatggattaattcatg 620
>gb|CB654996.1|CB654996 OSJNEc07P17.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07P17 5', mRNA sequence
Length = 750
Score = 188 bits (95), Expect = 5e-045
Identities = 236/283 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 324 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 383
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 384 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 443
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 444 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 503
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 504 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 563
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 564 ttaattgagtcatctgcagagatgctgtatggattaattcatg 606
>gb|CB656194.1|CB656194 OSJNEc10E04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10E04 5', mRNA sequence
Length = 714
Score = 188 bits (95), Expect = 5e-045
Identities = 236/283 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 322 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 381
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 382 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 441
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 442 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 501
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 502 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 561
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 562 ttaattgagtcatctgcagagatgctgtatggattaattcatg 604
>gb|CB662970.1|CB662970 OSJNEd07H10.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07H10 5', mRNA sequence
Length = 740
Score = 188 bits (95), Expect = 5e-045
Identities = 236/283 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 456 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 515
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 516 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 575
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 576 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 635
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 636 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 695
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 696 ttaattgagtcatctgcagagatgctgtatggattaattcatg 738
>dbj|AK111555.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051E04, full
insert sequence
Length = 1228
Score = 188 bits (95), Expect = 5e-045
Identities = 236/283 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 372 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 431
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 432 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 491
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 492 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 551
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 552 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 611
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 612 ttaattgagtcatctgcagagatgctgtatggattaattcatg 654
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Plus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 747 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 806
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 807 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 866
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 867 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 926
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 927 ccacaaaagcc 937
>ref|NM_197780.1| Oryza sativa (japonica cultivar-group) putative casein kinase II
beta subunit (OSJNBa0027P10.8), mRNA
Length = 1229
Score = 188 bits (95), Expect = 5e-045
Identities = 236/283 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 384 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 443
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 444 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 503
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 504 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 563
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 564 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 623
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 624 ttaattgagtcatctgcagagatgctgtatggattaattcatg 666
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Plus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 759 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 818
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 819 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 878
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 879 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 938
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 939 ccacaaaagcc 949
>gb|CB662971.1|CB662971 OSJNEd07H10.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07H10 3', mRNA sequence
Length = 920
Score = 182 bits (92), Expect = 3e-043
Identities = 235/283 (83%)
Strand = Plus / Minus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 902 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 843
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || | |||||||| || ||||||||| | |||||||| || |||
Sbjct: 842 tcatggttctgcagttgncgcggcaatgagttcttctgtgagatcgatgatgattatata 783
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 782 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 723
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 722 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 663
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 662 ttaattgagtcatctgcagagatgctgtatggattaattcatg 620
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 527 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 468
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 467 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 408
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 407 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 348
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 347 ccacaaaagcc 337
>gb|CB683257.1|CB683257 OSJNEf11G15.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11G15 5', mRNA sequence
Length = 717
Score = 180 bits (91), Expect = 1e-042
Identities = 235/283 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| ||| |||| ||||||||||| || || || || || ||||||
Sbjct: 66 gaaactgacagtgaagattcacatgtcagtggttctgagggagaggacacatcttggatt 125
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 126 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 185
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 186 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 245
Query: 592 gatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaaaatgaa 651
||||| || ||||| | || ||||| |||||||| |||| || || ||||||||||||
Sbjct: 246 gatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaaaatgaa 305
Query: 652 cttattgaatcagctgctgagatgctctatggattgattcatg 694
| ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 306 ttaattgagtcatctgcagagatgctgtatggattaattcatg 348
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Plus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 441 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 500
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 501 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 560
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 561 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 620
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 621 ccacaaaagcc 631
>gb|CB659259.1|CB659259 OSJNEc16B11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16B11 3', mRNA sequence
Length = 842
Score = 168 bits (85), Expect = 5e-039
Identities = 220/265 (83%)
Strand = Plus / Minus
Query: 430 tcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgtagctta 489
|||||||| ||||||||||| || || || || || ||||||||||||||||| || ||
Sbjct: 839 tcagatgtcagtggttctgagggagaggacacatcttggatttcatggttctgcagtttg 780
Query: 490 aagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctc 549
|||||||| || ||||||||| | |||||||| || ||||| ||||||||||||||
Sbjct: 779 cgcggcaatgagttcttctgtgagatcgatgatgattatatacaggatgatttcaacctt 720
Query: 550 tgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgtt 609
||||| || ||||| || || |||||||||||||||||||||||||| || ||||| |
Sbjct: 719 tgtggtctgagcaatcaggtgccatattatgactatgcacttgatcttatcttagacatc 660
Query: 610 gaatcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgct 669
|| ||||| |||||||| |||| || || |||||||||||| | ||||| ||| ||||
Sbjct: 659 gagtcttctaatggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgca 600
Query: 670 gagatgctctatggattgattcatg 694
|||||||| |||||||| |||||||
Sbjct: 599 gagatgctgtatggattaattcatg 575
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 482 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 423
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 422 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 363
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 362 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 303
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 302 ccacaaaagcc 292
>dbj|AP003964.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone OJ2096_F11,
*** SEQUENCING IN PROGRESS ***
Length = 139814
Score = 155 bits (78), Expect = 7e-035
Identities = 165/194 (85%)
Strand = Plus / Minus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 16143 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 16084
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 16083 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 16024
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 16023 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 15964
Query: 604 gatgttgaatcttc 617
||| | ||||||||
Sbjct: 15963 gatatcgaatcttc 15950
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 14371 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 14320
Score = 44.1 bits (22), Expect = 0.19
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctac 873
||||| |||||||| |||||||| | |||||||||||||||
Sbjct: 14831 agtactgtgaagatatactgccccaagtgtgaagacatctac 14790
>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1058_B11
Length = 102824
Score = 155 bits (78), Expect = 7e-035
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 59379 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 59438
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 59439 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 59498
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 59499 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 59558
Query: 604 gatgttgaatcttc 617
||| | ||||||||
Sbjct: 59559 gatatcgaatcttc 59572
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 61151 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 61202
Score = 44.1 bits (22), Expect = 0.19
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctac 873
||||| |||||||| |||||||| | |||||||||||||||
Sbjct: 60691 agtactgtgaagatatactgccccaagtgtgaagacatctac 60732
>gb|AACV01016278.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016278, whole
genome shotgun sequence
Length = 22118
Score = 155 bits (78), Expect = 7e-035
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 2786 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 2845
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 2846 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 2905
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 2906 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 2965
Query: 604 gatgttgaatcttc 617
||| | ||||||||
Sbjct: 2966 gatatcgaatcttc 2979
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 4558 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 4609
Score = 44.1 bits (22), Expect = 0.19
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctac 873
||||| |||||||| |||||||| | |||||||||||||||
Sbjct: 4098 agtactgtgaagatatactgccccaagtgtgaagacatctac 4139
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 155 bits (78), Expect = 7e-035
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 6090606 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 6090665
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 6090666 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 6090725
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 6090726 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 6090785
Query: 604 gatgttgaatcttc 617
||| | ||||||||
Sbjct: 6090786 gatatcgaatcttc 6090799
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 6092378 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 6092429
Score = 44.1 bits (22), Expect = 0.19
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctac 873
||||| |||||||| |||||||| | |||||||||||||||
Sbjct: 6091918 agtactgtgaagatatactgccccaagtgtgaagacatctac 6091959
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 155 bits (78), Expect = 7e-035
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 4079683 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 4079742
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 4079743 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 4079802
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 4079803 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 4079862
Query: 604 gatgttgaatcttc 617
||| | ||||||||
Sbjct: 4079863 gatatcgaatcttc 4079876
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 4081455 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 4081506
Score = 44.1 bits (22), Expect = 0.19
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctac 873
||||| |||||||| |||||||| | |||||||||||||||
Sbjct: 4080995 agtactgtgaagatatactgccccaagtgtgaagacatctac 4081036
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 155 bits (78), Expect = 7e-035
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 17479122 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 17479181
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 17479182 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 17479241
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 17479242 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 17479301
Query: 604 gatgttgaatcttc 617
||| | ||||||||
Sbjct: 17479302 gatatcgaatcttc 17479315
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 17480894 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 17480945
Score = 44.1 bits (22), Expect = 0.19
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctac 873
||||| |||||||| |||||||| | |||||||||||||||
Sbjct: 17480434 agtactgtgaagatatactgccccaagtgtgaagacatctac 17480475
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 155 bits (78), Expect = 7e-035
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 424 gaagaatcagatgtgagtggttctgatggggaagatacttcgtggatttcatggttctgt 483
|||| ||||||||| ||||||||||| || || ||| || ||||||||||||| |||
Sbjct: 18467531 gaagcatcagatgttagtggttctgacggagaggatcactcatggatttcatggtactgc 18467590
Query: 484 agcttaaagggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttc 543
|| ||| || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 18467591 agtctaagagggaatgaattcttctgtgaggttgatgatgattatatacaagatgacttc 18467650
Query: 544 aacctctgtgggctaagcaaccaagttccatattatgactatgcacttgatctgatatta 603
|||||||||||||| |||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 18467651 aacctctgtgggcttagcagtcaagttccatattatgattatgctcttgatctcatttta 18467710
Query: 604 gatgttgaatcttc 617
||| | ||||||||
Sbjct: 18467711 gatatcgaatcttc 18467724
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 18469303 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 18469354
Score = 44.1 bits (22), Expect = 0.19
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctac 873
||||| |||||||| |||||||| | |||||||||||||||
Sbjct: 18468843 agtactgtgaagatatactgccccaagtgtgaagacatctac 18468884
>gb|CB654950.1|CB654950 OSJNEc07O06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07O06 3', mRNA sequence
Length = 887
Score = 153 bits (77), Expect = 3e-034
Identities = 191/229 (83%)
Strand = Plus / Minus
Query: 466 tggatttcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgac 525
||||||||||||||||| || || |||||||| || ||||||||| | ||||||||
Sbjct: 853 tggatttcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgat 794
Query: 526 tacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactat 585
|| ||||| |||||||||||||| ||||| || ||||| || || |||||||||||||||
Sbjct: 793 tatatacaggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactat 734
Query: 586 gcacttgatctgatattagatgttgaatcttcccatggtgatatgttgacagaagagcaa 645
||||||||||| || ||||| | || ||||| |||||||| |||| || || ||||||
Sbjct: 733 gcacttgatcttatcttagacatcgagtcttctaatggtgatgtgttcactgaggagcaa 674
Query: 646 aatgaacttattgaatcagctgctgagatgctctatggattgattcatg 694
|||||| | ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 673 aatgaattaattgagtcatctgcagagatgctgtatggattaattcatg 625
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 532 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 473
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 472 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 413
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 412 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 353
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 352 ccacaaaagcc 342
>gb|CV152500.1|CV152500 LS46-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 357
Score = 147 bits (74), Expect = 2e-032
Identities = 170/202 (84%)
Strand = Plus / Plus
Query: 493 ggcaatgaatttttctgtgaggttgatgatgactacatacaagatgatttcaacctctgt 552
|||||||| || ||||||||| | |||||||| || ||||| |||||||||||||| |||
Sbjct: 37 ggcaatgagttcttctgtgagatcgatgatgattatatacaggatgatttcaacctttgt 96
Query: 553 gggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttgaa 612
|| || ||||| || || |||||||||||||||||||||||||| || ||||| | ||
Sbjct: 97 ggtctgagcaatcaggtgccatattatgactatgcacttgatcttatcttagacatcgag 156
Query: 613 tcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgag 672
||||| |||||||| |||| || || |||||||||||| | ||||| ||| |||| |||
Sbjct: 157 tcttctaatggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagag 216
Query: 673 atgctctatggattgattcatg 694
||||| |||||||| |||||||
Sbjct: 217 atgctgtatggattaattcatg 238
>gb|AC084763.4| Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete
sequence
Length = 141307
Score = 147 bits (74), Expect = 2e-032
Identities = 164/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 107202 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 107261
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 107262 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 107321
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 107322 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 107381
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 107382 gatcttatcttaga 107395
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
|||||||||||||||||||| || | |||||||||||||| || || |||||||| ||
Sbjct: 108578 tactttgggacaacattcccacatctcttcctgatgacatatccacacttgaagccacaa 108637
Query: 973 aagcc 977
|||||
Sbjct: 108638 aagcc 108642
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||| |||| || || |||||||||||| | ||||| ||| |||| |||||||| |||
Sbjct: 107675 ggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagagatgctgtat 107734
Query: 682 ggattgattcatg 694
||||| |||||||
Sbjct: 107735 ggattaattcatg 107747
>gb|AACV01022119.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022119, whole
genome shotgun sequence
Length = 12494
Score = 147 bits (74), Expect = 2e-032
Identities = 164/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 8085 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 8144
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 8145 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 8204
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 8205 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 8264
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 8265 gatcttatcttaga 8278
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
|||||||||||||||||||| || | |||||||||||||| || || |||||||| ||
Sbjct: 9461 tactttgggacaacattcccacatctcttcctgatgacatatccacacttgaagccacaa 9520
Query: 973 aagcc 977
|||||
Sbjct: 9521 aagcc 9525
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||| |||| || || |||||||||||| | ||||| ||| |||| |||||||| |||
Sbjct: 8558 ggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagagatgctgtat 8617
Query: 682 ggattgattcatg 694
||||| |||||||
Sbjct: 8618 ggattaattcatg 8630
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 147 bits (74), Expect = 2e-032
Identities = 164/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 3715113 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 3715172
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 3715173 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 3715232
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 3715233 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 3715292
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 3715293 gatcttatcttaga 3715306
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
|||||||||||||||||||| || | |||||||||||||| || || |||||||| ||
Sbjct: 3716489 tactttgggacaacattcccacatctcttcctgatgacatatccacacttgaagccacaa 3716548
Query: 973 aagcc 977
|||||
Sbjct: 3716549 aagcc 3716553
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||| |||| || || |||||||||||| | ||||| ||| |||| |||||||| |||
Sbjct: 3715586 ggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagagatgctgtat 3715645
Query: 682 ggattgattcatg 694
||||| |||||||
Sbjct: 3715646 ggattaattcatg 3715658
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 147 bits (74), Expect = 2e-032
Identities = 164/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 9765430 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 9765489
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 9765490 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 9765549
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 9765550 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 9765609
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 9765610 gatcttatcttaga 9765623
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
|||||||||||||||||||| || | |||||||||||||| || || |||||||| ||
Sbjct: 9766806 tactttgggacaacattcccacatctcttcctgatgacatatccacacttgaagccacaa 9766865
Query: 973 aagcc 977
|||||
Sbjct: 9766866 aagcc 9766870
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||| |||| || || |||||||||||| | ||||| ||| |||| |||||||| |||
Sbjct: 9765903 ggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagagatgctgtat 9765962
Query: 682 ggattgattcatg 694
||||| |||||||
Sbjct: 9765963 ggattaattcatg 9765975
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 147 bits (74), Expect = 2e-032
Identities = 164/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 20631224 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 20631283
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 20631284 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 20631343
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 20631344 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 20631403
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 20631404 gatcttatcttaga 20631417
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
|||||||||||||||||||| || | |||||||||||||| || || |||||||| ||
Sbjct: 20632600 tactttgggacaacattcccacatctcttcctgatgacatatccacacttgaagccacaa 20632659
Query: 973 aagcc 977
|||||
Sbjct: 20632660 aagcc 20632664
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||| |||| || || |||||||||||| | ||||| ||| |||| |||||||| |||
Sbjct: 20631697 ggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagagatgctgtat 20631756
Query: 682 ggattgattcatg 694
||||| |||||||
Sbjct: 20631757 ggattaattcatg 20631769
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 147 bits (74), Expect = 2e-032
Identities = 164/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 21792519 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 21792578
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 21792579 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 21792638
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 21792639 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 21792698
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 21792699 gatcttatcttaga 21792712
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
|||||||||||||||||||| || | |||||||||||||| || || |||||||| ||
Sbjct: 21793895 tactttgggacaacattcccacatctcttcctgatgacatatccacacttgaagccacaa 21793954
Query: 973 aagcc 977
|||||
Sbjct: 21793955 aagcc 21793959
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||| |||| || || |||||||||||| | ||||| ||| |||| |||||||| |||
Sbjct: 21792992 ggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagagatgctgtat 21793051
Query: 682 ggattgattcatg 694
||||| |||||||
Sbjct: 21793052 ggattaattcatg 21793064
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 147 bits (74), Expect = 2e-032
Identities = 164/194 (84%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 21804182 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 21804241
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatgactacata 531
||||||||||| || || |||||||| || ||||||||| | |||||||| || |||
Sbjct: 21804242 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatgattatata 21804301
Query: 532 caagatgatttcaacctctgtgggctaagcaaccaagttccatattatgactatgcactt 591
|| |||||||||||||| ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 21804302 caggatgatttcaacctttgtggtctgagcaatcaggtgccatattatgactatgcactt 21804361
Query: 592 gatctgatattaga 605
||||| || |||||
Sbjct: 21804362 gatcttatcttaga 21804375
Score = 58.0 bits (29), Expect = 1e-005
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 913 tactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaagccccag 972
|||||||||||||||||||| || | |||||||||||||| || || |||||||| ||
Sbjct: 21805558 tactttgggacaacattcccacatctcttcctgatgacatatccacacttgaagccacaa 21805617
Query: 973 aagcc 977
|||||
Sbjct: 21805618 aagcc 21805622
Score = 58.0 bits (29), Expect = 1e-005
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 622 ggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctgagatgctctat 681
|||||| |||| || || |||||||||||| | ||||| ||| |||| |||||||| |||
Sbjct: 21804655 ggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcagagatgctgtat 21804714
Query: 682 ggattgattcatg 694
||||| |||||||
Sbjct: 21804715 ggattaattcatg 21804727
>gb|CB656195.1|CB656195 OSJNEc10E04.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10E04 3', mRNA sequence
Length = 818
Score = 133 bits (67), Expect = 3e-028
Identities = 170/203 (83%), Gaps = 1/203 (0%)
Strand = Plus / Minus
Query: 493 ggcaatgaatttttctgtgaggttgatg-atgactacatacaagatgatttcaacctctg 551
|||||||| || ||||||||| | |||| |||| || ||||| |||||||||||||| ||
Sbjct: 807 ggcaatgagttcttctgtgagatcgatggatgattatatacaggatgatttcaacctttg 748
Query: 552 tgggctaagcaaccaagttccatattatgactatgcacttgatctgatattagatgttga 611
||| || ||||| || || |||||||||||||||||||||||||| || ||||| | ||
Sbjct: 747 tggtctgagcaatcaggtgccatattatgactatgcacttgatcttatcttagacatcga 688
Query: 612 atcttcccatggtgatatgttgacagaagagcaaaatgaacttattgaatcagctgctga 671
||||| |||||||| |||| || || |||||||||||| | ||||| ||| |||| ||
Sbjct: 687 gtcttctaatggtgatgtgttcactgaggagcaaaatgaattaattgagtcatctgcaga 628
Query: 672 gatgctctatggattgattcatg 694
|||||| |||||||| |||||||
Sbjct: 627 gatgctgtatggattaattcatg 605
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 512 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 453
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 452 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 393
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 392 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 333
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 332 ccacaaaagcc 322
>gb|CB650782.1|CB650782 OSJNEb15G22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15G22 3', mRNA sequence
Length = 768
Score = 131 bits (66), Expect = 1e-027
Identities = 150/178 (84%)
Strand = Plus / Minus
Query: 517 gatgatgactacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatat 576
|||||||| || ||||| |||||||||||||| ||||| || ||||| || || ||||||
Sbjct: 763 gatgatgattatatacaggatgatttcaacctttgtggtctgagcaatcaggtgccatat 704
Query: 577 tatgactatgcacttgatctgatattagatgttgaatcttcccatggtgatatgttgaca 636
|||||||||||||||||||| || ||||| | || ||||| |||||||| |||| ||
Sbjct: 703 tatgactatgcacttgatcttatcttagacatcgagtcttctaatggtgatgtgttcact 644
Query: 637 gaagagcaaaatgaacttattgaatcagctgctgagatgctctatggattgattcatg 694
|| |||||||||||| | ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 643 gaggagcaaaatgaattaattgagtcatctgcagagatgctgtatggattaattcatg 586
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 493 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 434
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 433 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 374
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 373 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 314
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 313 ccacaaaagcc 303
>gb|CB654997.1|CB654997 OSJNEc07P17.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07P17 3', mRNA sequence
Length = 814
Score = 131 bits (66), Expect = 1e-027
Identities = 150/178 (84%)
Strand = Plus / Minus
Query: 517 gatgatgactacatacaagatgatttcaacctctgtgggctaagcaaccaagttccatat 576
|||||||| || ||||| |||||||||||||| ||||| || ||||| || || ||||||
Sbjct: 809 gatgatgattatatacaggatgatttcaacctttgtggtctgagcaatcaggtgccatat 750
Query: 577 tatgactatgcacttgatctgatattagatgttgaatcttcccatggtgatatgttgaca 636
|||||||||||||||||||| || ||||| | || ||||| |||||||| |||| ||
Sbjct: 749 tatgactatgcacttgatcttatcttagacatcgagtcttctaatggtgatgtgttcact 690
Query: 637 gaagagcaaaatgaacttattgaatcagctgctgagatgctctatggattgattcatg 694
|| |||||||||||| | ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 689 gaggagcaaaatgaattaattgagtcatctgcagagatgctgtatggattaattcatg 632
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 539 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 480
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 479 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 420
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 419 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 360
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 359 ccacaaaagcc 349
>gb|CB673754.1|CB673754 OSJNEe08H04.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08H04 3', mRNA sequence
Length = 719
Score = 85.7 bits (43), Expect = 6e-014
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctacactccaagatccaaatat 891
||||| |||||||| |||||||| | ||||||||||||||| |||| | ||||| ||
Sbjct: 527 agtactgtgaagatatactgccccaagtgtgaagacatctactatccacggtccaagtac 468
Query: 892 ctaagcaacatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
| | ||||||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 467 caaggcaacatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 409
>gb|CV722889.1|CV722889 root--01-O01.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--01-O01, mRNA sequence
Length = 487
Score = 85.7 bits (43), Expect = 6e-014
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 832 agtacggtgaagatttactgccctagatgtgaagacatctacactccaagatccaaatat 891
||||| |||||||| |||||||| | ||||||||||||||| |||| | ||||| ||
Sbjct: 475 agtactgtgaagatatactgccccaagtgtgaagacatctactatccacggtccaagtac 416
Query: 892 ctaagcaacatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
| | ||||||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 415 caaggcaacatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 357
>gb|AU183937.1|AU183937 AU183937 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61557, mRNA sequence
Length = 448
Score = 73.8 bits (37), Expect = 2e-010
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 329 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 388
Query: 472 tcatggttctgtagcttaaagggcaatgaatttttctgtgaggttgatgatga 524
||||||||||| || || |||||||| || ||||||||| | ||||||||
Sbjct: 389 tcatggttctgcagtttgcgcggcaatgagttcttctgtgagatcgatgatga 441
>gb|AU030812.1|AU030812 AU030812 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60280_2Z, mRNA sequence
Length = 645
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Plus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 157 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 216
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 217 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 276
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 277 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 336
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 337 ccacaaaagcc 347
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 640 gagcaaaatgaacttattgaatcagctgctgagatgctctatggattgattcatg 694
|||||||||||| | ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 10 gagcaaaatgaattaattgagtcatctgcagagatgctgtatggattaattcatg 64
>gb|AU095209.1|AU095209 AU095209 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60641, mRNA sequence
Length = 473
Score = 69.9 bits (35), Expect = 3e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 412 gaaactgacagcgaagaatcagatgtgagtggttctgatggggaagatacttcgtggatt 471
||||||||||| ||||| |||||||| ||||||||||| || || || || || ||||||
Sbjct: 383 gaaactgacagtgaagattcagatgtcagtggttctgagggagaggacacatcttggatt 442
Query: 472 tcatggttctg 482
|||||||||||
Sbjct: 443 tcatggttctg 453
>gb|CB000323.1|CB000323 S345U_C12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 663
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Plus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 146 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 205
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 206 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 265
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || | |||||||||||||| || || ||||||
Sbjct: 266 ggagcgtactttgggacaacattcccacatctcttcctgatgacatatccacacttgaag 325
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 326 ccacaaaagcc 336
>gb|CB659258.1|CB659258 OSJNEc16B11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16B11 5', mRNA sequence
Length = 625
Score = 69.9 bits (35), Expect = 3e-009
Identities = 152/191 (79%)
Strand = Plus / Minus
Query: 787 ggccaaccatgccttcctgttgggcaatcggatgttcctcgttcaagtacggtgaagatt 846
|||||||| || ||||||| |||||||| ||| ||||| | || || || ||||||||
Sbjct: 469 ggccaaccctgtcttcctgcagggcaatcagatattcctaggtctagcacagtgaagata 410
Query: 847 tactgccctagatgtgaagacatctacactccaagatccaaatatctaagcaacatcgac 906
||||| || | ||||||||| | | |||||||||||| || | | ||||||| |||
Sbjct: 409 tactgtccaaaatgtgaagatttacattatccaagatccaagtaccaaggcaacattgac 350
Query: 907 gggacttactttgggacaacattcccccacttgttcctgatgacatacccgcatttgaag 966
|| | |||||||||||||||||||| || || ||| |||||||||| || || ||||||
Sbjct: 349 ggagcgtactttgggacaacattcccacatttcttcttgatgacatatccacacttgaag 290
Query: 967 ccccagaagcc 977
|| || |||||
Sbjct: 289 ccacaaaagcc 279
Score = 54.0 bits (27), Expect = 2e-004
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 640 gagcaaaatgaacttattgaatcagctgctgagatgctctatggattgattcatg 694
|||||||||||| | ||||| ||| |||| |||||||| |||||||| |||||||
Sbjct: 616 gagcaaaatgaattaattgagtcatctgcagagatgctgtatggattaattcatg 562
>gb|AU095208.1|AU095208 AU095208 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60641, mRNA sequence
Length = 478
Score = 67.9 bits (34), Expect = 1e-008
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 876 tccaagatccaaatatctaagcaacatcgacgggacttactttgggacaacattccccca 935
|||||||||||| || | | ||||||| ||||| | |||||||||||||||||||| ||
Sbjct: 79 tccaagatccaagtaccaaggcaacattgacggagcgtactttgggacaacattcccaca 138
Query: 936 cttgttcctgatgacatacccgcatttgaagccccagaagcc 977
| |||||||||||||| || || |||||||| || |||||
Sbjct: 139 tctcttcctgatgacatatccacacttgaagccacaaaagcc 180
>gb|CB649444.1|CB649444 OSJNEb13F22.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13F22 3', mRNA sequence
Length = 760
Score = 56.0 bits (28), Expect = 5e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| ||||||||
Sbjct: 412 acatcgacggcgcatactttgggacaacattcccgcacctgtttctgatgac 361
>gb|CB649443.1|CB649443 OSJNEb13F22.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13F22 5', mRNA sequence
Length = 725
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 899 acatcgacgggacttactttgggacaacattcccccacttgttcctgatgac 950
|||||||||| | |||||||||||||||||||| ||| |||| |||||||
Sbjct: 398 acatcgacggcgcatactttgggacaacattcccgcacctgtttttgatgac 347
>dbj|AK120690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169H18, full
insert sequence
Length = 4054
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 611 gctggataagtacaggaacgttg 633
>gb|AACV01003094.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003094, whole
genome shotgun sequence
Length = 61898
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 53642 gctggataagtacaggaacgttg 53664
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 42719780 gctggataagtacaggaacgttg 42719802
>ref|NM_189412.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3621
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 345 gctggataagtacaggaacgttg 367
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 2348074 gctggataagtacaggaacgttg 2348096
>dbj|AP004365.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0458E05
Length = 193577
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 159993 gctggataagtacaggaacgttg 160015
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 16826873 gctggataagtacaggaacgttg 16826895
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 46.1 bits (23), Expect = 0.048
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 732 gctggataagtacaggaacgttg 754
|||||||||||||||||||||||
Sbjct: 42028594 gctggataagtacaggaacgttg 42028616
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,745,436
Number of Sequences: 438736
Number of extensions: 1745436
Number of successful extensions: 11544
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11221
Number of HSP's gapped (non-prelim): 293
length of query: 1311
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1290
effective length of database: 2,791,206,460
effective search space: 3600656333400
effective search space used: 3600656333400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)