BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.4
(760 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA... 478 e-132
ref|NM_191361.1| Oryza sativa (japonica cultivar-group), p... 478 e-132
gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA ... 278 4e-072
gb|AACV01002400.1| Oryza sativa (japonica cultivar-group) c... 218 3e-054
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 218 3e-054
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 218 3e-054
dbj|AP003239.3| Oryza sativa (japonica cultivar-group) geno... 218 3e-054
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 218 3e-054
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 218 3e-054
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 218 3e-054
dbj|AG206627.1| Oryza sativa (japonica cultivar-group) DNA,... 64 1e-007
emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC O... 64 1e-007
emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC O... 64 1e-007
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
gb|CV728275.1|CV728275 14Salt--06-O10.g1 Salt treated rice ... 60 2e-006
dbj|AK069725.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
ref|XM_482629.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-006
>dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001N13, full
insert sequence
Length = 1250
Score = 478 bits (241), Expect = e-132
Identities = 484/565 (85%)
Strand = Plus / Minus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 1032 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 973
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 972 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 913
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 912 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 853
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatcacggtcttg 407
||| ||||||||||||||||||||||| ||||| |||| ||| |||||||| | ||| ||
Sbjct: 852 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatcgcagtcctg 793
Query: 408 ggctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaa 467
|||||||| || ||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 792 tgctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaa 733
Query: 468 cttcccatagtggatccttctggagagtgcctgcaagcaggttgtgtcacaaagagcact 527
||| |||||||| || ||| ||||||| |||||||||||| | |||||||||||||||||
Sbjct: 732 cttaccatagtgaattcttttggagagcgcctgcaagcagatcgtgtcacaaagagcact 673
Query: 528 ggatccagcattaccatcacttccttctttcaccaatcttggaagaagttcatcaaaata 587
||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 672 ggatccataattaccatcacttccttctttcactaatcttggaagaagctcatcaaaata 613
Query: 588 cattttccaaatctctttgttgatattgatagaatcagcaatgggatgcaaaacccttgg 647
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct: 612 cattttccaaatctccttgttgatattaatagaatcagcaataggatgcaaaacctttgg 553
Query: 648 gtattgcataggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatc 707
|| || | |||||||||| | || ||||||||||||| | |||||| |||||||||||
Sbjct: 552 atactggagaggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatc 493
Query: 708 tgggcccttgtatctcccaacctgt 732
|||| |||||||||||||||||||
Sbjct: 492 agggctcttgtatctcccaacctgt 468
>ref|NM_191361.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 885
Score = 478 bits (241), Expect = e-132
Identities = 484/565 (85%)
Strand = Plus / Minus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 885 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 826
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 825 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 766
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 765 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 706
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatcacggtcttg 407
||| ||||||||||||||||||||||| ||||| |||| ||| |||||||| | ||| ||
Sbjct: 705 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatcgcagtcctg 646
Query: 408 ggctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaa 467
|||||||| || ||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 645 tgctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaa 586
Query: 468 cttcccatagtggatccttctggagagtgcctgcaagcaggttgtgtcacaaagagcact 527
||| |||||||| || ||| ||||||| |||||||||||| | |||||||||||||||||
Sbjct: 585 cttaccatagtgaattcttttggagagcgcctgcaagcagatcgtgtcacaaagagcact 526
Query: 528 ggatccagcattaccatcacttccttctttcaccaatcttggaagaagttcatcaaaata 587
||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 525 ggatccataattaccatcacttccttctttcactaatcttggaagaagctcatcaaaata 466
Query: 588 cattttccaaatctctttgttgatattgatagaatcagcaatgggatgcaaaacccttgg 647
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct: 465 cattttccaaatctccttgttgatattaatagaatcagcaataggatgcaaaacctttgg 406
Query: 648 gtattgcataggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatc 707
|| || | |||||||||| | || ||||||||||||| | |||||| |||||||||||
Sbjct: 405 atactggagaggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatc 346
Query: 708 tgggcccttgtatctcccaacctgt 732
|||| |||||||||||||||||||
Sbjct: 345 agggctcttgtatctcccaacctgt 321
>gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040012000_PLATE_H10_80_091.ab1 similar to putative
chorismate mutase precursor [Oryza sativa, mRNA sequence
Length = 653
Score = 278 bits (140), Expect = 4e-072
Identities = 218/245 (88%)
Strand = Plus / Minus
Query: 488 tggagagtgcctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcac 547
||||||| |||||||||||| | |||||||||||||||||||||||| || ||||||||
Sbjct: 653 tggagagcgcctgcaagcagatcgtgtcacaaagagcactggatccataatnaccatcac 594
Query: 548 ttccttctttcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgt 607
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| | ||
Sbjct: 593 ttccttctttcactaatcttggaagaagctcatcaaaatacatnttccaaatctcctngt 534
Query: 608 tgatattgatagaatcagcaatgggatgcaaaacccttgggtattgcataggtggcaacc 667
||||||| |||||||||||||| |||||||||||| |||| || || | ||||||||||
Sbjct: 533 tgatattaatagaatcagcaataggatgcaaaacctttggatactggagaggtggcaaca 474
Query: 668 ggggctcaggcagatccttggaaaagaaagggtgctcatctgggcccttgtatctcccaa 727
| || ||||||||||||| | |||||| ||||||||||| |||| ||||||||||||||
Sbjct: 473 gtggttcaggcagatcctccggaaagaatgggtgctcatcagggctcttgtatctcccaa 414
Query: 728 cctgt 732
|||||
Sbjct: 413 cctgt 409
>gb|AACV01002400.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002400, whole
genome shotgun sequence
Length = 23210
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Minus
Query: 497 cctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcacttccttctt 556
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1781 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcacttccttctt 1722
Query: 557 tcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattga 616
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 1721 tcactaatcttggaagaagctcatcaaaatacattttccaaatctccttgttgatattaa 1662
Query: 617 tagaatcagcaatgggatgcaaaacc 642
||||||||||||| ||||||||||||
Sbjct: 1661 tagaatcagcaataggatgcaaaacc 1636
Score = 109 bits (55), Expect = 2e-021
Identities = 187/231 (80%)
Strand = Plus / Minus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 2545 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 2486
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 2485 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 2426
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 2425 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 2366
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatc 398
||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 2365 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 2315
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 409 gctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaac 468
|||||||| || ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 2160 gctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaac 2101
Query: 469 ttcccatagtggatccttctggagagtgcctg 500
|| |||||||| || ||| ||||||| |||||
Sbjct: 2100 ttaccatagtgaattcttttggagagcgcctg 2069
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 657 aggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatctgggccctt 716
|||||||||| | || ||||||||||||| | |||||| ||||||||||| |||| |||
Sbjct: 1155 aggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatcagggctctt 1096
Query: 717 gtatctcccaacct 730
||||||||||||||
Sbjct: 1095 gtatctcccaacct 1082
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 497 cctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcacttccttctt 556
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 32246744 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcacttccttctt 32246803
Query: 557 tcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattga 616
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 32246804 tcactaatcttggaagaagctcatcaaaatacattttccaaatctccttgttgatattaa 32246863
Query: 617 tagaatcagcaatgggatgcaaaacc 642
||||||||||||| ||||||||||||
Sbjct: 32246864 tagaatcagcaataggatgcaaaacc 32246889
Score = 109 bits (55), Expect = 2e-021
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 32245980 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 32246039
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 32246040 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 32246099
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 32246100 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 32246159
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatc 398
||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 32246160 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 32246210
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 409 gctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaac 468
|||||||| || ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 32246365 gctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaac 32246424
Query: 469 ttcccatagtggatccttctggagagtgcctg 500
|| |||||||| || ||| ||||||| |||||
Sbjct: 32246425 ttaccatagtgaattcttttggagagcgcctg 32246456
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 657 aggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatctgggccctt 716
|||||||||| | || ||||||||||||| | |||||| ||||||||||| |||| |||
Sbjct: 32247370 aggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatcagggctctt 32247429
Query: 717 gtatctcccaacct 730
||||||||||||||
Sbjct: 32247430 gtatctcccaacct 32247443
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 497 cctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcacttccttctt 556
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6694127 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcacttccttctt 6694186
Query: 557 tcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattga 616
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 6694187 tcactaatcttggaagaagctcatcaaaatacattttccaaatctccttgttgatattaa 6694246
Query: 617 tagaatcagcaatgggatgcaaaacc 642
||||||||||||| ||||||||||||
Sbjct: 6694247 tagaatcagcaataggatgcaaaacc 6694272
Score = 109 bits (55), Expect = 2e-021
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 6693363 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 6693422
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 6693423 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 6693482
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 6693483 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 6693542
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatc 398
||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 6693543 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 6693593
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 409 gctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaac 468
|||||||| || ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 6693748 gctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaac 6693807
Query: 469 ttcccatagtggatccttctggagagtgcctg 500
|| |||||||| || ||| ||||||| |||||
Sbjct: 6693808 ttaccatagtgaattcttttggagagcgcctg 6693839
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 657 aggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatctgggccctt 716
|||||||||| | || ||||||||||||| | |||||| ||||||||||| |||| |||
Sbjct: 6694753 aggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatcagggctctt 6694812
Query: 717 gtatctcccaacct 730
||||||||||||||
Sbjct: 6694813 gtatctcccaacct 6694826
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0403C05
Length = 151085
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 497 cctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcacttccttctt 556
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 36827 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcacttccttctt 36886
Query: 557 tcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattga 616
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 36887 tcactaatcttggaagaagctcatcaaaatacattttccaaatctccttgttgatattaa 36946
Query: 617 tagaatcagcaatgggatgcaaaacc 642
||||||||||||| ||||||||||||
Sbjct: 36947 tagaatcagcaataggatgcaaaacc 36972
Score = 109 bits (55), Expect = 2e-021
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 36063 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 36122
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 36123 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 36182
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 36183 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 36242
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatc 398
||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 36243 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 36293
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 409 gctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaac 468
|||||||| || ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 36448 gctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaac 36507
Query: 469 ttcccatagtggatccttctggagagtgcctg 500
|| |||||||| || ||| ||||||| |||||
Sbjct: 36508 ttaccatagtgaattcttttggagagcgcctg 36539
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 657 aggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatctgggccctt 716
|||||||||| | || ||||||||||||| | |||||| ||||||||||| |||| |||
Sbjct: 37453 aggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatcagggctctt 37512
Query: 717 gtatctcccaacct 730
||||||||||||||
Sbjct: 37513 gtatctcccaacct 37526
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 497 cctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcacttccttctt 556
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6600888 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcacttccttctt 6600947
Query: 557 tcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattga 616
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 6600948 tcactaatcttggaagaagctcatcaaaatacattttccaaatctccttgttgatattaa 6601007
Query: 617 tagaatcagcaatgggatgcaaaacc 642
||||||||||||| ||||||||||||
Sbjct: 6601008 tagaatcagcaataggatgcaaaacc 6601033
Score = 109 bits (55), Expect = 2e-021
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 6600124 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 6600183
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 6600184 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 6600243
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 6600244 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 6600303
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatc 398
||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 6600304 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 6600354
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 409 gctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaac 468
|||||||| || ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 6600509 gctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaac 6600568
Query: 469 ttcccatagtggatccttctggagagtgcctg 500
|| |||||||| || ||| ||||||| |||||
Sbjct: 6600569 ttaccatagtgaattcttttggagagcgcctg 6600600
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 657 aggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatctgggccctt 716
|||||||||| | || ||||||||||||| | |||||| ||||||||||| |||| |||
Sbjct: 6601514 aggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatcagggctctt 6601573
Query: 717 gtatctcccaacct 730
||||||||||||||
Sbjct: 6601574 gtatctcccaacct 6601587
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 497 cctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcacttccttctt 556
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 31802609 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcacttccttctt 31802668
Query: 557 tcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattga 616
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 31802669 tcactaatcttggaagaagctcatcaaaatacattttccaaatctccttgttgatattaa 31802728
Query: 617 tagaatcagcaatgggatgcaaaacc 642
||||||||||||| ||||||||||||
Sbjct: 31802729 tagaatcagcaataggatgcaaaacc 31802754
Score = 109 bits (55), Expect = 2e-021
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 31801845 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 31801904
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 31801905 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 31801964
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 31801965 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 31802024
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatc 398
||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 31802025 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 31802075
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 409 gctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaac 468
|||||||| || ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 31802230 gctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaac 31802289
Query: 469 ttcccatagtggatccttctggagagtgcctg 500
|| |||||||| || ||| ||||||| |||||
Sbjct: 31802290 ttaccatagtgaattcttttggagagcgcctg 31802321
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 657 aggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatctgggccctt 716
|||||||||| | || ||||||||||||| | |||||| ||||||||||| |||| |||
Sbjct: 31803235 aggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatcagggctctt 31803294
Query: 717 gtatctcccaacct 730
||||||||||||||
Sbjct: 31803295 gtatctcccaacct 31803308
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 218 bits (110), Expect = 3e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 497 cctgcaagcaggttgtgtcacaaagagcactggatccagcattaccatcacttccttctt 556
||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 32166074 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcacttccttctt 32166133
Query: 557 tcaccaatcttggaagaagttcatcaaaatacattttccaaatctctttgttgatattga 616
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 32166134 tcactaatcttggaagaagctcatcaaaatacattttccaaatctccttgttgatattaa 32166193
Query: 617 tagaatcagcaatgggatgcaaaacc 642
||||||||||||| ||||||||||||
Sbjct: 32166194 tagaatcagcaataggatgcaaaacc 32166219
Score = 109 bits (55), Expect = 2e-021
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 168 tcaatccagcctcctaagcaaatacgcgatttgaacctctttggttagcggcatgattct 227
|||||||| ||||| ||||| || || | ||||||||| ||||||||||||||||| ||
Sbjct: 32165310 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 32165369
Query: 228 gtagctgtacagctcggcgaccaagctcggaacgatcttgtacaccggtgggctgccgtt 287
|||||||||||| || || ||||| || || |||||||||| ||||| ||||||
Sbjct: 32165370 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 32165429
Query: 288 gtcctccacaccgatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 347
||| || | || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 32165430 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 32165489
Query: 348 ttcgatagcacgctccaccgtttcatatgtgagaaggttcatgagttgatc 398
||| ||||||||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 32165490 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 32165540
Score = 103 bits (52), Expect = 1e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 409 gctattatggctggcgtgtaagcttcaggggactcttgaaacttggcctctgccacaaac 468
|||||||| || ||| ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 32165695 gctattatcgcaggcatgtaagcttcaggagactcttgaaacttagcctctgccacaaac 32165754
Query: 469 ttcccatagtggatccttctggagagtgcctg 500
|| |||||||| || ||| ||||||| |||||
Sbjct: 32165755 ttaccatagtgaattcttttggagagcgcctg 32165786
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 657 aggtggcaaccggggctcaggcagatccttggaaaagaaagggtgctcatctgggccctt 716
|||||||||| | || ||||||||||||| | |||||| ||||||||||| |||| |||
Sbjct: 32166700 aggtggcaacagtggttcaggcagatcctccggaaagaatgggtgctcatcagggctctt 32166759
Query: 717 gtatctcccaacct 730
||||||||||||||
Sbjct: 32166760 gtatctcccaacct 32166773
>dbj|AG206627.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND5043_0_703_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND5043, genomic survey sequence
Length = 486
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 477 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 422
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 144767
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 16964 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 17019
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 176388
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 131179 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 131234
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 127804 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 127749
>gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025341, whole
genome shotgun sequence
Length = 39984
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 6463 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 6408
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119
genomic scaffold, whole genome shotgun sequence
Length = 4546750
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 992589 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 992534
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 20176235 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 20176180
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 23956217 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 23956162
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgcaa 503
||||| |||||||||||| |||| |||||||| ||||| ||||||||||||||||
Sbjct: 23884423 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgcaa 23884368
>dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E07, full
insert sequence
Length = 1348
Score = 61.9 bits (31), Expect = 5e-007
Identities = 49/55 (89%)
Strand = Plus / Minus
Query: 448 aacttggcctctgccacaaacttcccatagtggatccttctggagagtgcctgca 502
||||| |||||||||||| |||| |||||||| ||||| |||||||||||||||
Sbjct: 790 aacttagcctctgccacatacttgccatagtgaatcctcttggagagtgcctgca 736
>gb|CV728275.1|CV728275 14Salt--06-O10.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-O10, mRNA sequence
Length = 488
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 457 tctgccacaaacttcccatagtggatccttctggagagtgcctgca 502
||||||||| || ||||||||| ||||||||| |||||||||||||
Sbjct: 436 tctgccacatacctcccatagttgatccttctcgagagtgcctgca 481
>dbj|AK069725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027D10, full
insert sequence
Length = 1043
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 457 tctgccacaaacttcccatagtggatccttctggagagtgcctgca 502
||||||||| || ||||||||| ||||||||| |||||||||||||
Sbjct: 624 tctgccacatacctcccatagttgatccttcttgagagtgcctgca 579
>ref|XM_482629.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1043
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 457 tctgccacaaacttcccatagtggatccttctggagagtgcctgca 502
||||||||| || ||||||||| ||||||||| |||||||||||||
Sbjct: 624 tctgccacatacctcccatagttgatccttcttgagagtgcctgca 579
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 998,961
Number of Sequences: 438736
Number of extensions: 998961
Number of successful extensions: 4636
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4507
Number of HSP's gapped (non-prelim): 129
length of query: 760
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 739
effective length of database: 2,791,206,460
effective search space: 2062701573940
effective search space used: 2062701573940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)