BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.2
(850 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA... 157 1e-035
ref|NM_191361.1| Oryza sativa (japonica cultivar-group), p... 157 1e-035
gb|AACV01002400.1| Oryza sativa (japonica cultivar-group) c... 113 2e-022
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 113 2e-022
dbj|AP003239.3| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-022
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 113 2e-022
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 113 2e-022
gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA ... 42 0.48
>dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001N13, full
insert sequence
Length = 1250
Score = 157 bits (79), Expect = 1e-035
Identities = 233/285 (81%)
Strand = Plus / Minus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 1032 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 973
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 972 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 913
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 912 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 853
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttg 568
||| | ||||||||||||||||| || ||||| |||| ||| |||||||| | ||| ||
Sbjct: 852 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatcgcagtcctg 793
Query: 569 ggctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 792 tgctattatcgcaggcatgtaagcttcaggagactcttgaaactt 748
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 703 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 652
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 633 tggaagaagctcatcaaaatacattttccaaa 602
>ref|NM_191361.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 885
Score = 157 bits (79), Expect = 1e-035
Identities = 233/285 (81%)
Strand = Plus / Minus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 885 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 826
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 825 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 766
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 765 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 706
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatcacggtcttg 568
||| | ||||||||||||||||| || ||||| |||| ||| |||||||| | ||| ||
Sbjct: 705 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatcgcagtcctg 646
Query: 569 ggctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 645 tgctattatcgcaggcatgtaagcttcaggagactcttgaaactt 601
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 556 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 505
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 486 tggaagaagctcatcaaaatacattttccaaa 455
>gb|AACV01002400.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002400, whole
genome shotgun sequence
Length = 23210
Score = 113 bits (57), Expect = 2e-022
Identities = 187/231 (80%)
Strand = Plus / Minus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 2545 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 2486
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 2485 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 2426
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 2425 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 2366
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatc 559
||| | ||||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 2365 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 2315
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 570 gctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 2160 gctattatcgcaggcatgtaagcttcaggagactcttgaaactt 2117
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 1781 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 1730
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 1711 tggaagaagctcatcaaaatacattttccaaa 1680
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 113 bits (57), Expect = 2e-022
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 32245980 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 32246039
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 32246040 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 32246099
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 32246100 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 32246159
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatc 559
||| | ||||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 32246160 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 32246210
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 570 gctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 32246365 gctattatcgcaggcatgtaagcttcaggagactcttgaaactt 32246408
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 32246744 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 32246795
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 32246814 tggaagaagctcatcaaaatacattttccaaa 32246845
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 113 bits (57), Expect = 2e-022
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 6693363 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 6693422
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 6693423 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 6693482
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 6693483 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 6693542
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatc 559
||| | ||||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 6693543 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 6693593
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 570 gctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 6693748 gctattatcgcaggcatgtaagcttcaggagactcttgaaactt 6693791
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 6694127 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 6694178
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 6694197 tggaagaagctcatcaaaatacattttccaaa 6694228
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0403C05
Length = 151085
Score = 113 bits (57), Expect = 2e-022
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 36063 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 36122
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 36123 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 36182
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 36183 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 36242
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatc 559
||| | ||||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 36243 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 36293
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 570 gctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 36448 gctattatcgcaggcatgtaagcttcaggagactcttgaaactt 36491
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 36827 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 36878
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 36897 tggaagaagctcatcaaaatacattttccaaa 36928
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 113 bits (57), Expect = 2e-022
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 6600124 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 6600183
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 6600184 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 6600243
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 6600244 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 6600303
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatc 559
||| | ||||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 6600304 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 6600354
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 570 gctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 6600509 gctattatcgcaggcatgtaagcttcaggagactcttgaaactt 6600552
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 6600888 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 6600939
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 6600958 tggaagaagctcatcaaaatacattttccaaa 6600989
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 113 bits (57), Expect = 2e-022
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 31801845 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 31801904
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 31801905 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 31801964
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 31801965 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 31802024
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatc 559
||| | ||||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 31802025 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 31802075
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 570 gctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 31802230 gctattatcgcaggcatgtaagcttcaggagactcttgaaactt 31802273
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 31802609 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 31802660
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 31802679 tggaagaagctcatcaaaatacattttccaaa 31802710
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 113 bits (57), Expect = 2e-022
Identities = 187/231 (80%)
Strand = Plus / Plus
Query: 329 tcaatccagcctcctaagcaagtacgcgacctcaacctccttggttagcggcatgattct 388
|||||||| ||||| |||||||| || || | |||||||||||||||||||||||| ||
Sbjct: 32165310 tcaatccaatctcctcagcaagtaggctacttgaacctccttggttagcggcatgatcct 32165369
Query: 389 gtagctgtacagctcggcgaccaagctcggcctgatcttgtagaccggtgggctgccctt 448
|||||||||||| || || ||||| || ||||| |||||||| | ||||| ||| ||
Sbjct: 32165370 gtagctgtacagttcagccaccaaactgggccttatcttgtacattggtggagcgccgtt 32165429
Query: 449 gtccttagcaccaatgttcacctcttgcccgaagatcttggctttggcctccaccctgtg 508
||| | ||| || | | |||||| || || |||||||| || || || |||||||| ||
Sbjct: 32165430 gtcttcagcgcctaaatccacctcctgtccaaagatcttagccttagcttccaccctatg 32165489
Query: 509 ttcgacagcacgctccaccgtttnntatgtgagaaggttcatgagttgatc 559
||| | ||||||||||||||||| || ||||| |||| ||| ||||||||
Sbjct: 32165490 ttcaatagcacgctccaccgtttcataggtgaggaggtgcattagttgatc 32165540
Score = 56.0 bits (28), Expect = 3e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 570 gctattatggctggcgtgtaagcttcaggggactcttgaaactt 613
|||||||| || ||| ||||||||||||| ||||||||||||||
Sbjct: 32165695 gctattatcgcaggcatgtaagcttcaggagactcttgaaactt 32165738
Score = 48.1 bits (24), Expect = 0.008
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| ||||||||||||
Sbjct: 32166074 cctgcaagcagatcgtgtcacaaagagcactggatccataattaccatcact 32166125
Score = 46.1 bits (23), Expect = 0.031
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 728 tggaagangnncatcaaaatacattttccaaa 759
||||||| | |||||||||||||||||||||
Sbjct: 32166144 tggaagaagctcatcaaaatacattttccaaa 32166175
>gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040012000_PLATE_H10_80_091.ab1 similar to putative
chorismate mutase precursor [Oryza sativa, mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.48
Identities = 43/52 (82%)
Strand = Plus / Minus
Query: 658 cctgcaagcaggttnnntcncaaagagcactggatccagcattaccatcact 709
||||||||||| | || |||||||||||||||||| || |||||||||
Sbjct: 644 cctgcaagcagatcgtgtcacaaagagcactggatccataatnaccatcact 593
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 684,810
Number of Sequences: 438736
Number of extensions: 684810
Number of successful extensions: 2849
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2769
Number of HSP's gapped (non-prelim): 76
length of query: 850
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 829
effective length of database: 2,791,206,460
effective search space: 2313910155340
effective search space used: 2313910155340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)