BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA... 500 e-139
ref|NM_191361.1| Oryza sativa (japonica cultivar-group), p... 500 e-139
gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA ... 391 e-106
gb|AACV01002400.1| Oryza sativa (japonica cultivar-group) c... 218 4e-054
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 218 4e-054
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 218 4e-054
dbj|AP003239.3| Oryza sativa (japonica cultivar-group) geno... 218 4e-054
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 218 4e-054
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 218 4e-054
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 218 4e-054
dbj|AG206627.1| Oryza sativa (japonica cultivar-group) DNA,... 64 1e-007
emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC O... 64 1e-007
emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC O... 64 1e-007
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA... 62 5e-007
gb|CV728275.1|CV728275 14Salt--06-O10.g1 Salt treated rice ... 60 2e-006
dbj|AK069725.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
ref|XM_482629.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-006
dbj|AP005514.2| Oryza sativa (japonica cultivar-group) geno... 48 0.008
gb|AACV01004231.1| Oryza sativa (japonica cultivar-group) c... 48 0.008
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 48 0.008
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.008
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 48 0.008
>dbj|AK068983.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001N13, full
insert sequence
Length = 1250
Score = 500 bits (252), Expect = e-139
Identities = 414/468 (88%)
Strand = Plus / Plus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 324 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 383
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 384 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 443
Query: 415 tagagaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcaccc 474
||||||||| ||||| || ||| |||||||||||||||||||||||| |||||||||||
Sbjct: 444 tagagaaaccgaaaaactacatcaacaggttgggagatacaagagccctgatgagcaccc 503
Query: 475 tttcttttccaaggatctgcctgagccccggttgccacctatgcaatacccaagggtttt 534
|||||| | ||||||||||||| || | |||||||||| | || || |||| ||||||
Sbjct: 504 attctttccggaggatctgcctgaaccactgttgccacctctccagtatccaaaggtttt 563
Query: 535 gcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattttgatga 594
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 gcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattttgatga 623
Query: 595 acttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgctctttg 654
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 624 gcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgctctttg 683
Query: 655 tgacacaacctgcttgcaggcactctccagaaggatccactatgggaagtttgtggcaga 714
|||||| | |||||||||||| ||||||| ||| || |||||||| ||||||||||||||
Sbjct: 684 tgacacgatctgcttgcaggcgctctccaaaagaattcactatggtaagtttgtggcaga 743
Query: 715 ggccaagtttcaagagtcccctgaagcttacacgccagccataatagc 762
||| |||||||||||||| ||||||||||||| ||| || ||||||||
Sbjct: 744 ggctaagtttcaagagtctcctgaagcttacatgcctgcgataatagc 791
>ref|NM_191361.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 885
Score = 500 bits (252), Expect = e-139
Identities = 414/468 (88%)
Strand = Plus / Plus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 177 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 236
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 237 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 296
Query: 415 tagagaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcaccc 474
||||||||| ||||| || ||| |||||||||||||||||||||||| |||||||||||
Sbjct: 297 tagagaaaccgaaaaactacatcaacaggttgggagatacaagagccctgatgagcaccc 356
Query: 475 tttcttttccaaggatctgcctgagccccggttgccacctatgcaatacccaagggtttt 534
|||||| | ||||||||||||| || | |||||||||| | || || |||| ||||||
Sbjct: 357 attctttccggaggatctgcctgaaccactgttgccacctctccagtatccaaaggtttt 416
Query: 535 gcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattttgatga 594
|||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 417 gcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattttgatga 476
Query: 595 acttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgctctttg 654
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 477 gcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgctctttg 536
Query: 655 tgacacaacctgcttgcaggcactctccagaaggatccactatgggaagtttgtggcaga 714
|||||| | |||||||||||| ||||||| ||| || |||||||| ||||||||||||||
Sbjct: 537 tgacacgatctgcttgcaggcgctctccaaaagaattcactatggtaagtttgtggcaga 596
Query: 715 ggccaagtttcaagagtcccctgaagcttacacgccagccataatagc 762
||| |||||||||||||| ||||||||||||| ||| || ||||||||
Sbjct: 597 ggctaagtttcaagagtctcctgaagcttacatgcctgcgataatagc 644
>gb|CA754252.1|CA754252 BR040012000_PLATE_H10_80_091.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040012000_PLATE_H10_80_091.ab1 similar to putative
chorismate mutase precursor [Oryza sativa, mRNA sequence
Length = 653
Score = 391 bits (197), Expect = e-106
Identities = 340/389 (87%)
Strand = Plus / Plus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 265 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 324
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 325 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 384
Query: 415 tagagaaactgaaaagctccatgcacaggttgggagatacaagagcccagatgagcaccc 474
||||||||| ||| | || ||| |||||||||||||||||||||||| |||||||||||
Sbjct: 385 tagagaaaccgaanaactacatcaacaggttgggagatacaagagccctgatgagcaccc 444
Query: 475 tttcttttccaaggatctgcctgagccccggttgccacctatgcaatacccaagggtttt 534
|||||| | ||||||||||||| || | |||||||||| | || || |||| ||||||
Sbjct: 445 attctttccggaggatctgcctgaaccactgttgccacctctccagtatccaaaggtttt 504
Query: 535 gcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattttgatga 594
|||||| |||||||||||||| ||||||||| | ||||||||||| ||||||||||||||
Sbjct: 505 gcatcctattgctgattctattaatatcaacnaggagatttggaanatgtattttgatga 564
Query: 595 acttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgctctttg 654
|||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 565 gcttcttccaagattagtgaaagaaggaagtgatggtnattatggatccagtgctctttg 624
Query: 655 tgacacaacctgcttgcaggcactctcca 683
|||||| | |||||||||||| |||||||
Sbjct: 625 tgacacgatctgcttgcaggcgctctcca 653
>gb|AACV01002400.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002400, whole
genome shotgun sequence
Length = 23210
Score = 218 bits (110), Expect = 4e-054
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 1636 ggttttgcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattt 1695
Query: 589 tgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgc 648
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 1696 tgatgagcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgc 1755
Query: 649 tctttgtgacacaacctgcttgcagg 674
|||||||||||| | |||||||||||
Sbjct: 1756 tctttgtgacacgatctgcttgcagg 1781
Score = 125 bits (63), Expect = 4e-026
Identities = 117/135 (86%)
Strand = Plus / Plus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 850 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 909
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 910 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 969
Query: 415 tagagaaactgaaaa 429
||||||||| |||||
Sbjct: 970 tagagaaaccgaaaa 984
Score = 103 bits (52), Expect = 2e-019
Identities = 82/92 (89%)
Strand = Plus / Plus
Query: 671 caggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagag 730
||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 2069 caggcgctctccaaaagaattcactatggtaagtttgtggcagaggctaagtttcaagag 2128
Query: 731 tcccctgaagcttacacgccagccataatagc 762
|| ||||||||||||| ||| || ||||||||
Sbjct: 2129 tctcctgaagcttacatgcctgcgataatagc 2160
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
Sbjct: 1082 aggttgggagatacaagagccctgatgagcacccattctttccggaggatctgcctgaac 1141
Query: 501 cccggttgccacct 514
| | ||||||||||
Sbjct: 1142 cactgttgccacct 1155
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 218 bits (110), Expect = 4e-054
Identities = 137/146 (93%)
Strand = Plus / Minus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 32246889 ggttttgcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattt 32246830
Query: 589 tgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgc 648
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 32246829 tgatgagcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgc 32246770
Query: 649 tctttgtgacacaacctgcttgcagg 674
|||||||||||| | |||||||||||
Sbjct: 32246769 tctttgtgacacgatctgcttgcagg 32246744
Score = 125 bits (63), Expect = 4e-026
Identities = 117/135 (86%)
Strand = Plus / Minus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 32247675 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 32247616
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 32247615 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 32247556
Query: 415 tagagaaactgaaaa 429
||||||||| |||||
Sbjct: 32247555 tagagaaaccgaaaa 32247541
Score = 103 bits (52), Expect = 2e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 671 caggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagag 730
||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 32246456 caggcgctctccaaaagaattcactatggtaagtttgtggcagaggctaagtttcaagag 32246397
Query: 731 tcccctgaagcttacacgccagccataatagc 762
|| ||||||||||||| ||| || ||||||||
Sbjct: 32246396 tctcctgaagcttacatgcctgcgataatagc 32246365
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
Sbjct: 32247443 aggttgggagatacaagagccctgatgagcacccattctttccggaggatctgcctgaac 32247384
Query: 501 cccggttgccacct 514
| | ||||||||||
Sbjct: 32247383 cactgttgccacct 32247370
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 218 bits (110), Expect = 4e-054
Identities = 137/146 (93%)
Strand = Plus / Minus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 6694272 ggttttgcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattt 6694213
Query: 589 tgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgc 648
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 6694212 tgatgagcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgc 6694153
Query: 649 tctttgtgacacaacctgcttgcagg 674
|||||||||||| | |||||||||||
Sbjct: 6694152 tctttgtgacacgatctgcttgcagg 6694127
Score = 125 bits (63), Expect = 4e-026
Identities = 117/135 (86%)
Strand = Plus / Minus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 6695058 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 6694999
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 6694998 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 6694939
Query: 415 tagagaaactgaaaa 429
||||||||| |||||
Sbjct: 6694938 tagagaaaccgaaaa 6694924
Score = 103 bits (52), Expect = 2e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 671 caggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagag 730
||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 6693839 caggcgctctccaaaagaattcactatggtaagtttgtggcagaggctaagtttcaagag 6693780
Query: 731 tcccctgaagcttacacgccagccataatagc 762
|| ||||||||||||| ||| || ||||||||
Sbjct: 6693779 tctcctgaagcttacatgcctgcgataatagc 6693748
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
Sbjct: 6694826 aggttgggagatacaagagccctgatgagcacccattctttccggaggatctgcctgaac 6694767
Query: 501 cccggttgccacct 514
| | ||||||||||
Sbjct: 6694766 cactgttgccacct 6694753
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0403C05
Length = 151085
Score = 218 bits (110), Expect = 4e-054
Identities = 137/146 (93%)
Strand = Plus / Minus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 36972 ggttttgcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattt 36913
Query: 589 tgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgc 648
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 36912 tgatgagcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgc 36853
Query: 649 tctttgtgacacaacctgcttgcagg 674
|||||||||||| | |||||||||||
Sbjct: 36852 tctttgtgacacgatctgcttgcagg 36827
Score = 125 bits (63), Expect = 4e-026
Identities = 117/135 (86%)
Strand = Plus / Minus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 37758 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 37699
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 37698 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 37639
Query: 415 tagagaaactgaaaa 429
||||||||| |||||
Sbjct: 37638 tagagaaaccgaaaa 37624
Score = 103 bits (52), Expect = 2e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 671 caggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagag 730
||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 36539 caggcgctctccaaaagaattcactatggtaagtttgtggcagaggctaagtttcaagag 36480
Query: 731 tcccctgaagcttacacgccagccataatagc 762
|| ||||||||||||| ||| || ||||||||
Sbjct: 36479 tctcctgaagcttacatgcctgcgataatagc 36448
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
Sbjct: 37526 aggttgggagatacaagagccctgatgagcacccattctttccggaggatctgcctgaac 37467
Query: 501 cccggttgccacct 514
| | ||||||||||
Sbjct: 37466 cactgttgccacct 37453
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 218 bits (110), Expect = 4e-054
Identities = 137/146 (93%)
Strand = Plus / Minus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 6601033 ggttttgcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattt 6600974
Query: 589 tgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgc 648
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 6600973 tgatgagcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgc 6600914
Query: 649 tctttgtgacacaacctgcttgcagg 674
|||||||||||| | |||||||||||
Sbjct: 6600913 tctttgtgacacgatctgcttgcagg 6600888
Score = 125 bits (63), Expect = 4e-026
Identities = 117/135 (86%)
Strand = Plus / Minus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 6601819 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 6601760
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 6601759 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 6601700
Query: 415 tagagaaactgaaaa 429
||||||||| |||||
Sbjct: 6601699 tagagaaaccgaaaa 6601685
Score = 103 bits (52), Expect = 2e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 671 caggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagag 730
||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 6600600 caggcgctctccaaaagaattcactatggtaagtttgtggcagaggctaagtttcaagag 6600541
Query: 731 tcccctgaagcttacacgccagccataatagc 762
|| ||||||||||||| ||| || ||||||||
Sbjct: 6600540 tctcctgaagcttacatgcctgcgataatagc 6600509
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
Sbjct: 6601587 aggttgggagatacaagagccctgatgagcacccattctttccggaggatctgcctgaac 6601528
Query: 501 cccggttgccacct 514
| | ||||||||||
Sbjct: 6601527 cactgttgccacct 6601514
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 218 bits (110), Expect = 4e-054
Identities = 137/146 (93%)
Strand = Plus / Minus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 31802754 ggttttgcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattt 31802695
Query: 589 tgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgc 648
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 31802694 tgatgagcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgc 31802635
Query: 649 tctttgtgacacaacctgcttgcagg 674
|||||||||||| | |||||||||||
Sbjct: 31802634 tctttgtgacacgatctgcttgcagg 31802609
Score = 125 bits (63), Expect = 4e-026
Identities = 117/135 (86%)
Strand = Plus / Minus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 31803540 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 31803481
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 31803480 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 31803421
Query: 415 tagagaaactgaaaa 429
||||||||| |||||
Sbjct: 31803420 tagagaaaccgaaaa 31803406
Score = 103 bits (52), Expect = 2e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 671 caggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagag 730
||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 31802321 caggcgctctccaaaagaattcactatggtaagtttgtggcagaggctaagtttcaagag 31802262
Query: 731 tcccctgaagcttacacgccagccataatagc 762
|| ||||||||||||| ||| || ||||||||
Sbjct: 31802261 tctcctgaagcttacatgcctgcgataatagc 31802230
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
Sbjct: 31803308 aggttgggagatacaagagccctgatgagcacccattctttccggaggatctgcctgaac 31803249
Query: 501 cccggttgccacct 514
| | ||||||||||
Sbjct: 31803248 cactgttgccacct 31803235
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 218 bits (110), Expect = 4e-054
Identities = 137/146 (93%)
Strand = Plus / Minus
Query: 529 ggttttgcatcccattgctgattctatcaatatcaacaaagagatttggaaaatgtattt 588
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 32166219 ggttttgcatcctattgctgattctattaatatcaacaaggagatttggaaaatgtattt 32166160
Query: 589 tgatgaacttcttccaagattggtgaaagaaggaagtgatggtaatgctggatccagtgc 648
|||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 32166159 tgatgagcttcttccaagattagtgaaagaaggaagtgatggtaattatggatccagtgc 32166100
Query: 649 tctttgtgacacaacctgcttgcagg 674
|||||||||||| | |||||||||||
Sbjct: 32166099 tctttgtgacacgatctgcttgcagg 32166074
Score = 125 bits (63), Expect = 4e-026
Identities = 117/135 (86%)
Strand = Plus / Minus
Query: 295 agaagacagcatcatatttggccttttggagagagcacagttttgttacaatgctgatac 354
|||||||||||||||||| |||| || ||||||||||||||||| |||||||||||||
Sbjct: 32167005 agaagacagcatcatattcagcctcttagagagagcacagttttgctacaatgctgatat 32166946
Query: 355 atatgatagcaatgctttccacatggatggttttggaggatctttggttgaatatatagt 414
|||||||| ||||||||||| ||||||| |||| || ||||||||||||| || ||
Sbjct: 32166945 atatgataaaaatgctttccatgtggatggatttgatggctctttggttgaattcatggt 32166886
Query: 415 tagagaaactgaaaa 429
||||||||| |||||
Sbjct: 32166885 tagagaaaccgaaaa 32166871
Score = 103 bits (52), Expect = 2e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 671 caggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtttcaagag 730
||||| ||||||| ||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 32165786 caggcgctctccaaaagaattcactatggtaagtttgtggcagaggctaagtttcaagag 32165727
Query: 731 tcccctgaagcttacacgccagccataatagc 762
|| ||||||||||||| ||| || ||||||||
Sbjct: 32165726 tctcctgaagcttacatgcctgcgataatagc 32165695
Score = 83.8 bits (42), Expect = 1e-013
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 441 aggttgggagatacaagagcccagatgagcaccctttcttttccaaggatctgcctgagc 500
|||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |
Sbjct: 32166773 aggttgggagatacaagagccctgatgagcacccattctttccggaggatctgcctgaac 32166714
Query: 501 cccggttgccacct 514
| | ||||||||||
Sbjct: 32166713 cactgttgccacct 32166700
>dbj|AG206627.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND5043_0_703_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND5043, genomic survey sequence
Length = 486
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 422 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 477
>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 144767
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 17019 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 16964
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 18026 gggaggtacaagagcccggatgagcatcctttctt 17992
>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 176388
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 131234 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 131179
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 132241 gggaggtacaagagcccggatgagcatcctttctt 132207
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 127749 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 127804
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 126742 gggaggtacaagagcccggatgagcatcctttctt 126776
>gb|AACV01025341.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025341, whole
genome shotgun sequence
Length = 39984
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 6408 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 6463
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 5401 gggaggtacaagagcccggatgagcatcctttctt 5435
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119
genomic scaffold, whole genome shotgun sequence
Length = 4546750
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 992534 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 992589
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 991527 gggaggtacaagagcccggatgagcatcctttctt 991561
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 20176180 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 20176235
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 20175173 gggaggtacaagagcccggatgagcatcctttctt 20175207
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 23956162 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 23956217
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 23955155 gggaggtacaagagcccggatgagcatcctttctt 23955189
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 63.9 bits (32), Expect = 1e-007
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 668 ttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
|||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 23884368 ttgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 23884423
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 23883361 gggaggtacaagagcccggatgagcatcctttctt 23883395
>dbj|AK105512.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-E07, full
insert sequence
Length = 1348
Score = 61.9 bits (31), Expect = 5e-007
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 669 tgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagtt 723
||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||
Sbjct: 736 tgcaggcactctccaagaggattcactatggcaagtatgtggcagaggctaagtt 790
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 446 gggagatacaagagcccagatgagcaccctttctt 480
||||| ||||||||||| |||||||| ||||||||
Sbjct: 513 gggaggtacaagagcccggatgagcatcctttctt 547
>gb|CV728275.1|CV728275 14Salt--06-O10.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-O10, mRNA sequence
Length = 488
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 669 tgcaggcactctccagaaggatccactatgggaagtttgtggcaga 714
||||||||||||| ||||||||| ||||||||| || |||||||||
Sbjct: 481 tgcaggcactctcgagaaggatcaactatgggaggtatgtggcaga 436
>dbj|AK069725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027D10, full
insert sequence
Length = 1043
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 669 tgcaggcactctccagaaggatccactatgggaagtttgtggcaga 714
||||||||||||| ||||||||| ||||||||| || |||||||||
Sbjct: 579 tgcaggcactctcaagaaggatcaactatgggaggtatgtggcaga 624
>ref|XM_482629.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1043
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 669 tgcaggcactctccagaaggatccactatgggaagtttgtggcaga 714
||||||||||||| ||||||||| ||||||||| || |||||||||
Sbjct: 579 tgcaggcactctcaagaaggatcaactatgggaggtatgtggcaga 624
>dbj|AP005514.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0035A24
Length = 176446
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 453 acaagagcccagatgagcaccctttctt 480
||||||||||||||||||| ||||||||
Sbjct: 53113 acaagagcccagatgagcatcctttctt 53086
>gb|AACV01004231.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004231, whole
genome shotgun sequence
Length = 20365
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 453 acaagagcccagatgagcaccctttctt 480
||||||||||||||||||| ||||||||
Sbjct: 18597 acaagagcccagatgagcatcctttctt 18624
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 453 acaagagcccagatgagcaccctttctt 480
||||||||||||||||||| ||||||||
Sbjct: 1706613 acaagagcccagatgagcatcctttctt 1706586
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 453 acaagagcccagatgagcaccctttctt 480
||||||||||||||||||| ||||||||
Sbjct: 1857939 acaagagcccagatgagcatcctttctt 1857912
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 453 acaagagcccagatgagcaccctttctt 480
||||||||||||||||||| ||||||||
Sbjct: 15311003 acaagagcccagatgagcatcctttctt 15310976
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 48.1 bits (24), Expect = 0.008
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 453 acaagagcccagatgagcaccctttctt 480
||||||||||||||||||| ||||||||
Sbjct: 15644426 acaagagcccagatgagcatcctttctt 15644399
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,379,411
Number of Sequences: 438736
Number of extensions: 1379411
Number of successful extensions: 9384
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9153
Number of HSP's gapped (non-prelim): 231
length of query: 892
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 871
effective length of database: 2,791,206,460
effective search space: 2431140826660
effective search space used: 2431140826660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)