BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2486118.2.1
(635 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK102134.1| Oryza sativa (japonica cultivar-group) cDNA... 281 2e-073
dbj|AK102695.1| Oryza sativa (japonica cultivar-group) cDNA... 281 2e-073
dbj|AK105393.1| Oryza sativa (japonica cultivar-group) cDNA... 281 2e-073
tpg|BK000090.1| TPA: Oryza sativa (japonica cultivar-group)... 281 2e-073
gb|AACV01012879.1| Oryza sativa (japonica cultivar-group) c... 281 2e-073
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 281 2e-073
ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA 281 2e-073
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 281 2e-073
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 281 2e-073
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 281 2e-073
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 281 2e-073
gb|CV731587.1|CV731587 FLO--05-K24.b1 Rice flower lambda ph... 196 1e-047
dbj|AP004459.2| Oryza sativa (japonica cultivar-group) geno... 186 1e-044
gb|AACV01018193.1| Oryza sativa (japonica cultivar-group) c... 186 1e-044
ref|XM_481802.1| Oryza sativa (japonica cultivar-group), mRNA 186 1e-044
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 186 1e-044
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 186 1e-044
dbj|AK110534.1| Oryza sativa (japonica cultivar-group) cDNA... 184 4e-044
gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01... 184 4e-044
tpg|BK000089.1| TPA: Oryza sativa (japonica cultivar-group)... 184 4e-044
gb|AACV01022174.1| Oryza sativa (japonica cultivar-group) c... 184 4e-044
ref|NM_197900.1| Oryza sativa (japonica cultivar-group) put... 184 4e-044
ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chr... 184 4e-044
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 184 4e-044
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 184 4e-044
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 184 4e-044
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 184 4e-044
gb|CV731588.1|CV731588 FLO--05-K24.g1 Rice flower lambda ph... 180 6e-043
gb|CA754914.1|CA754914 BR030008000_PLATE_F09_70_078.ab1 OA ... 161 6e-037
emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC O... 159 2e-036
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 159 2e-036
gb|AACV01025238.1| Oryza sativa (japonica cultivar-group) c... 159 2e-036
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 159 2e-036
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 159 2e-036
dbj|AK072260.1| Oryza sativa (japonica cultivar-group) cDNA... 157 9e-036
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 157 9e-036
dbj|AP005449.3| Oryza sativa (japonica cultivar-group) geno... 157 9e-036
gb|AACV01013818.1| Oryza sativa (japonica cultivar-group) c... 157 9e-036
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 157 9e-036
gb|AU082190.1|AU082190 AU082190 Rice shoot Oryza sativa (ja... 121 5e-025
gb|AU082165.1|AU082165 AU082165 Rice cDNA from young root O... 119 2e-024
gb|AQ690930.1|AQ690930 nbxb0083H24r CUGI Rice BAC Library O... 100 2e-018
gb|AQ795409.1|AQ795409 nbxb0056G17r CUGI Rice BAC Library O... 100 2e-018
gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G1... 100 2e-018
gb|AU078363.1|AU078363 AU078363 Rice cDNA from young root O... 60 2e-006
dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
dbj|AK106763.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.36
dbj|AP004635.3| Oryza sativa (japonica cultivar-group) geno... 42 0.36
dbj|AP005504.3| Oryza sativa (japonica cultivar-group) geno... 42 0.36
gb|AACV01017332.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
ref|NM_189076.2| Oryza sativa (japonica cultivar-group), mRNA 42 0.36
ref|XM_480206.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.36
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.36
>dbj|AK102134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085F12, full
insert sequence
Length = 3968
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Plus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 3495 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 3554
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 3555 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 3614
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 3615 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 3674
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 3675 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 3734
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 3735 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 3794
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 3795 ccgtcacagaactcgcagataggcggctccttcacattccc 3835
>dbj|AK102695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103F21, full
insert sequence
Length = 2757
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Plus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 2190 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 2249
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 2250 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 2309
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 2310 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 2369
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 2370 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 2429
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 2430 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 2489
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 2490 ccgtcacagaactcgcagataggcggctccttcacattccc 2530
>dbj|AK105393.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B04, full
insert sequence
Length = 4089
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Plus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 3384 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 3443
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 3444 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 3503
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 3504 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 3563
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 3564 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 3623
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 3624 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 3683
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 3684 ccgtcacagaactcgcagataggcggctccttcacattccc 3724
>tpg|BK000090.1| TPA: Oryza sativa (japonica cultivar-group) cellulose synthase-like
D2 gene, complete cds
Length = 5000
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Plus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 4214 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 4273
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 4274 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 4333
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 4334 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 4393
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 4394 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 4453
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 4454 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 4513
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 4514 ccgtcacagaactcgcagataggcggctccttcacattccc 4554
>gb|AACV01012879.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012879, whole
genome shotgun sequence
Length = 80883
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Plus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 52007 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 52066
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 52067 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 52126
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 52127 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 52186
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 52187 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 52246
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 52247 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 52306
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 52307 ccgtcacagaactcgcagataggcggctccttcacattccc 52347
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Minus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 66282 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 66223
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 66222 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 66163
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 66162 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 66103
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 66102 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 66043
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 66042 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 65983
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 65982 ccgtcacagaactcgcagataggcggctccttcacattccc 65942
>ref|NM_185396.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 3968
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Plus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 3495 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 3554
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 3555 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 3614
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 3615 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 3674
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 3675 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 3734
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 3735 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 3794
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 3795 ccgtcacagaactcgcagataggcggctccttcacattccc 3835
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Minus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 623431 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 623372
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 623371 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 623312
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 623311 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 623252
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 623251 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 623192
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 623191 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 623132
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 623131 ccgtcacagaactcgcagataggcggctccttcacattccc 623091
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Minus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 553053 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 552994
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 552993 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 552934
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 552933 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 552874
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 552873 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 552814
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 552813 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 552754
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 552753 ccgtcacagaactcgcagataggcggctccttcacattccc 552713
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Minus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 553053 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 552994
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 552993 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 552934
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 552933 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 552874
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 552873 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 552814
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 552813 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 552754
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 552753 ccgtcacagaactcgcagataggcggctccttcacattccc 552713
Score = 157 bits (79), Expect = 9e-036
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 12997566 gagatcccgcagtacagcaagctgctcggcggcggcttcttcagcttctgggtgctcgcg 12997625
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| |||||||||||||||||||| ||||| || | ||||| ||||| |||||||||
Sbjct: 12997626 cactactacccgttcgccaagggcctcatgggccgccgcggccggacgcccaccatcgtc 12997685
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctc 291
| ||||||||| |||||| ||||||||||| ||||
Sbjct: 12997686 tacgtctgggccggcctcatctccatcaccgtctc 12997720
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 281 bits (142), Expect = 2e-073
Identities = 291/341 (85%)
Strand = Plus / Minus
Query: 17 gacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatc 76
||||||||||| | || || ||||||||||||||||| || || |||||||| || |||
Sbjct: 659854 gacgacgagtttgctgatctctacatcgtcaagtggacatcactcatgatcccaccgatc 659795
Query: 77 gtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagc 136
|| ||||||||||| |||||||||| |||||| |||||||||||| | || || |||||
Sbjct: 659794 gtcatcatgatggttaacctgatcgccatcgctgtcgggttcagcaggacaatatacagt 659735
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
|| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 659734 gaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtgctggct 659675
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||||| ||||| ||||||||||| || ||||| |||| || || || ||||||||||||
Sbjct: 659674 cacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgaccatcgtc 659615
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatcaacccg 316
||||||||| | |||||||| ||||||||||||| |||||||||| |||||||| |||
Sbjct: 659614 ttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatcaatccg 659555
Query: 317 ccgtcccagaaccagcagattggtgggtcgttcacattccc 357
||||| |||||| |||||| || || || |||||||||||
Sbjct: 659554 ccgtcacagaactcgcagataggcggctccttcacattccc 659514
Score = 157 bits (79), Expect = 9e-036
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 13260475 gagatcccgcagtacagcaagctgctcggcggcggcttcttcagcttctgggtgctcgcg 13260534
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| |||||||||||||||||||| ||||| || | ||||| ||||| |||||||||
Sbjct: 13260535 cactactacccgttcgccaagggcctcatgggccgccgcggccggacgcccaccatcgtc 13260594
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctc 291
| ||||||||| |||||| ||||||||||| ||||
Sbjct: 13260595 tacgtctgggccggcctcatctccatcaccgtctc 13260629
>gb|CV731587.1|CV731587 FLO--05-K24.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-K24,
mRNA sequence
Length = 427
Score = 196 bits (99), Expect = 1e-047
Identities = 195/227 (85%)
Strand = Plus / Plus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||| || ||||| |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 4 tacagtgaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttctgggtg 63
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||||| ||||| ||||| ||||||||||| || ||||| |||| || || || ||||||
Sbjct: 64 ctggctcacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgacc 123
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| | |||||||| ||||||||||||| |||||||||| ||||||
Sbjct: 124 atcgtcttcgtctggtctggcctccttgccatcaccatctcattgctgtgggttgccatc 183
Query: 311 aacccgccgtcccagaaccagcagattggtgggtcgttcacattccc 357
|| |||||||| |||||| |||||| || || || |||||||||||
Sbjct: 184 aatccgccgtcacagaactcgcagataggcggctccttcacattccc 230
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0410E11
Length = 150200
Score = 186 bits (94), Expect = 1e-044
Identities = 241/290 (83%)
Strand = Plus / Minus
Query: 30 cggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcgtgatcatgatgg 89
||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |||||
Sbjct: 69660 cggacctctacatcgtcaagtggtcgtcgctgctgatcccgcccatcaccatcgggatgg 69601
Query: 90 tgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcgagatcccgcagt 149
||||| | |||| |||||| ||| ||| | |||||||||||||| | ||||| ||
Sbjct: 69600 tgaacatcatcgccatcgccttcgccttcgcgaggaccatctacagcgacaacccgcggt 69541
Query: 150 ggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgt 209
|| | ||| | | ||||||| ||||||||||||||||||||| || ||||| |||| |
Sbjct: 69540 gggggaagttcatcggcggcggcttcttcagcttctgggtgctcgcccacctcaacccct 69481
Query: 210 tcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgg 269
||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 69480 tcgccaagggcctcatggggcggcgcggcaagacgcccaccatcgtcttcgtctggtcgg 69421
Query: 270 gcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgccg 319
|||||||||| |||||| |||| ||||| ||||| ||||||| |||||||
Sbjct: 69420 gcctcctctcaatcaccgtctccctgctctgggtcgccatcagcccgccg 69371
>gb|AACV01018193.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018193, whole
genome shotgun sequence
Length = 40282
Score = 186 bits (94), Expect = 1e-044
Identities = 241/290 (83%)
Strand = Plus / Minus
Query: 30 cggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcgtgatcatgatgg 89
||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |||||
Sbjct: 30296 cggacctctacatcgtcaagtggtcgtcgctgctgatcccgcccatcaccatcgggatgg 30237
Query: 90 tgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcgagatcccgcagt 149
||||| | |||| |||||| ||| ||| | |||||||||||||| | ||||| ||
Sbjct: 30236 tgaacatcatcgccatcgccttcgccttcgcgaggaccatctacagcgacaacccgcggt 30177
Query: 150 ggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgt 209
|| | ||| | | ||||||| ||||||||||||||||||||| || ||||| |||| |
Sbjct: 30176 gggggaagttcatcggcggcggcttcttcagcttctgggtgctcgcccacctcaacccct 30117
Query: 210 tcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgg 269
||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 30116 tcgccaagggcctcatggggcggcgcggcaagacgcccaccatcgtcttcgtctggtcgg 30057
Query: 270 gcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgccg 319
|||||||||| |||||| |||| ||||| ||||| ||||||| |||||||
Sbjct: 30056 gcctcctctcaatcaccgtctccctgctctgggtcgccatcagcccgccg 30007
>ref|XM_481802.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3348
Score = 186 bits (94), Expect = 1e-044
Identities = 241/290 (83%)
Strand = Plus / Plus
Query: 30 cggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcgtgatcatgatgg 89
||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |||||
Sbjct: 3008 cggacctctacatcgtcaagtggtcgtcgctgctgatcccgcccatcaccatcgggatgg 3067
Query: 90 tgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcgagatcccgcagt 149
||||| | |||| |||||| ||| ||| | |||||||||||||| | ||||| ||
Sbjct: 3068 tgaacatcatcgccatcgccttcgccttcgcgaggaccatctacagcgacaacccgcggt 3127
Query: 150 ggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgt 209
|| | ||| | | ||||||| ||||||||||||||||||||| || ||||| |||| |
Sbjct: 3128 gggggaagttcatcggcggcggcttcttcagcttctgggtgctcgcccacctcaacccct 3187
Query: 210 tcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgg 269
||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 3188 tcgccaagggcctcatggggcggcgcggcaagacgcccaccatcgtcttcgtctggtcgg 3247
Query: 270 gcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgccg 319
|||||||||| |||||| |||| ||||| ||||| ||||||| |||||||
Sbjct: 3248 gcctcctctcaatcaccgtctccctgctctgggtcgccatcagcccgccg 3297
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 186 bits (94), Expect = 1e-044
Identities = 241/290 (83%)
Strand = Plus / Minus
Query: 30 cggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcgtgatcatgatgg 89
||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |||||
Sbjct: 15397418 cggacctctacatcgtcaagtggtcgtcgctgctgatcccgcccatcaccatcgggatgg 15397359
Query: 90 tgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcgagatcccgcagt 149
||||| | |||| |||||| ||| ||| | |||||||||||||| | ||||| ||
Sbjct: 15397358 tgaacatcatcgccatcgccttcgccttcgcgaggaccatctacagcgacaacccgcggt 15397299
Query: 150 ggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgt 209
|| | ||| | | ||||||| ||||||||||||||||||||| || ||||| |||| |
Sbjct: 15397298 gggggaagttcatcggcggcggcttcttcagcttctgggtgctcgcccacctcaacccct 15397239
Query: 210 tcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgg 269
||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 15397238 tcgccaagggcctcatggggcggcgcggcaagacgcccaccatcgtcttcgtctggtcgg 15397179
Query: 270 gcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgccg 319
|||||||||| |||||| |||| ||||| ||||| ||||||| |||||||
Sbjct: 15397178 gcctcctctcaatcaccgtctccctgctctgggtcgccatcagcccgccg 15397129
Score = 42.1 bits (21), Expect = 0.36
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||| ||||||| ||||||||| || ||||| ||||| ||||||||||||
Sbjct: 3306347 ggcggcgtgttcttcaacttctgggtcctcttccacctctaccccttcgccaagggc 3306291
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 186 bits (94), Expect = 1e-044
Identities = 241/290 (83%)
Strand = Plus / Minus
Query: 30 cggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcgtgatcatgatgg 89
||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |||||
Sbjct: 6871453 cggacctctacatcgtcaagtggtcgtcgctgctgatcccgcccatcaccatcgggatgg 6871394
Query: 90 tgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcgagatcccgcagt 149
||||| | |||| |||||| ||| ||| | |||||||||||||| | ||||| ||
Sbjct: 6871393 tgaacatcatcgccatcgccttcgccttcgcgaggaccatctacagcgacaacccgcggt 6871334
Query: 150 ggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgt 209
|| | ||| | | ||||||| ||||||||||||||||||||| || ||||| |||| |
Sbjct: 6871333 gggggaagttcatcggcggcggcttcttcagcttctgggtgctcgcccacctcaacccct 6871274
Query: 210 tcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgg 269
||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 6871273 tcgccaagggcctcatggggcggcgcggcaagacgcccaccatcgtcttcgtctggtcgg 6871214
Query: 270 gcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgccg 319
|||||||||| |||||| |||| ||||| ||||| ||||||| |||||||
Sbjct: 6871213 gcctcctctcaatcaccgtctccctgctctgggtcgccatcagcccgccg 6871164
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 186 bits (94), Expect = 1e-044
Identities = 241/290 (83%)
Strand = Plus / Minus
Query: 30 cggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcgtgatcatgatgg 89
||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |||||
Sbjct: 14473459 cggacctctacatcgtcaagtggtcgtcgctgctgatcccgcccatcaccatcgggatgg 14473400
Query: 90 tgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcgagatcccgcagt 149
||||| | |||| |||||| ||| ||| | |||||||||||||| | ||||| ||
Sbjct: 14473399 tgaacatcatcgccatcgccttcgccttcgcgaggaccatctacagcgacaacccgcggt 14473340
Query: 150 ggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgt 209
|| | ||| | | ||||||| ||||||||||||||||||||| || ||||| |||| |
Sbjct: 14473339 gggggaagttcatcggcggcggcttcttcagcttctgggtgctcgcccacctcaacccct 14473280
Query: 210 tcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgg 269
||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 14473279 tcgccaagggcctcatggggcggcgcggcaagacgcccaccatcgtcttcgtctggtcgg 14473220
Query: 270 gcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgccg 319
|||||||||| |||||| |||| ||||| ||||| ||||||| |||||||
Sbjct: 14473219 gcctcctctcaatcaccgtctccctgctctgggtcgccatcagcccgccg 14473170
Score = 42.1 bits (21), Expect = 0.36
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||| ||||||| ||||||||| || ||||| ||||| ||||||||||||
Sbjct: 3445160 ggcggcgtgttcttcaacttctgggtcctcttccacctctaccccttcgccaagggc 3445104
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 186 bits (94), Expect = 1e-044
Identities = 241/290 (83%)
Strand = Plus / Minus
Query: 30 cggacctgtacatcgtcaagtggacgtcgctgatgatcccgcccatcgtgatcatgatgg 89
||||||| ||||||||||||||| |||||||| |||||||||||||| ||| |||||
Sbjct: 15635505 cggacctctacatcgtcaagtggtcgtcgctgctgatcccgcccatcaccatcgggatgg 15635446
Query: 90 tgaacctgatcggcatcgcggtcgggttcagccgcaccatctacagcgagatcccgcagt 149
||||| | |||| |||||| ||| ||| | |||||||||||||| | ||||| ||
Sbjct: 15635445 tgaacatcatcgccatcgccttcgccttcgcgaggaccatctacagcgacaacccgcggt 15635386
Query: 150 ggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgt 209
|| | ||| | | ||||||| ||||||||||||||||||||| || ||||| |||| |
Sbjct: 15635385 gggggaagttcatcggcggcggcttcttcagcttctgggtgctcgcccacctcaacccct 15635326
Query: 210 tcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgg 269
||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||| |||
Sbjct: 15635325 tcgccaagggcctcatggggcggcgcggcaagacgcccaccatcgtcttcgtctggtcgg 15635266
Query: 270 gcctcctctccatcaccatctcgctgctgtgggtggccatcaacccgccg 319
|||||||||| |||||| |||| ||||| ||||| ||||||| |||||||
Sbjct: 15635265 gcctcctctcaatcaccgtctccctgctctgggtcgccatcagcccgccg 15635216
Score = 42.1 bits (21), Expect = 0.36
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||| ||||||| ||||||||| || ||||| ||||| ||||||||||||
Sbjct: 3538821 ggcggcgtgttcttcaacttctgggtcctcttccacctctaccccttcgccaagggc 3538765
>dbj|AK110534.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-A07, full
insert sequence
Length = 1144
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 413 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 472
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 473 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 532
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 533 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 592
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 593 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 652
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 653 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 700
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
sequence
Length = 64582
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 60899 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 60958
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 60959 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 61018
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 61019 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 61078
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 61079 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 61138
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 61139 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 61186
>tpg|BK000089.1| TPA: Oryza sativa (japonica cultivar-group) cellulose synthase-like
D1 gene, complete cds
Length = 4188
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 3377 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 3436
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 3437 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 3496
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 3497 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 3556
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 3557 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 3616
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 3617 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 3664
>gb|AACV01022174.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg022174, whole
genome shotgun sequence
Length = 50890
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 43613 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 43672
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 43673 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 43732
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 43733 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 43792
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 43793 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 43852
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 43853 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 43900
>ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase
(OSJNBa0035H01.10), mRNA
Length = 3384
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 3021 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 3080
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 3081 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 3140
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 3141 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 3200
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 3201 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 3260
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 3261 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 3308
>ref|NT_080068.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4609300
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 4468575 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 4468634
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 4468635 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 4468694
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 4468695 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 4468754
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 4468755 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 4468814
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 4468815 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 4468862
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 10479769 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 10479828
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 10479829 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 10479888
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 10479889 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 10479948
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 10479949 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 10480008
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 10480009 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 10480056
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 21345563 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 21345622
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 21345623 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 21345682
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 21345683 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 21345742
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 21345743 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 21345802
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 21345803 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 21345850
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 22545181 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 22545240
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 22545241 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 22545300
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 22545301 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 22545360
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 22545361 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 22545420
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 22545421 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 22545468
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 184 bits (93), Expect = 4e-044
Identities = 239/288 (82%)
Strand = Plus / Plus
Query: 4 cggcgacgacgtggacgacgagttcncggacctgtacatcgtcaagtggacgtcgctgat 63
|||||||||||| |||||||||||| | || || ||| |||||||||||||| || ||
Sbjct: 22557649 cggcgacgacgtcgacgacgagttcgccgagctctacgcggtcaagtggacgtccctcat 22557708
Query: 64 gatcccgcccatcgtgatcatgatggtgaacctgatcggcatcgcggtcgggttcagccg 123
||| ||||| || ||||| ||| | ||||| ||| |||||| ||||| ||||||||
Sbjct: 22557709 gataccgccgctcaccatcataatgatcaacctcgtcgccatcgccgtcggcttcagccg 22557768
Query: 124 caccatctacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagctt 183
||||||||||||| |||||||||||||||||||| || || || ||||||||||||||
Sbjct: 22557769 caccatctacagcaccatcccgcagtggagcaagcttctcggtggagtcttcttcagctt 22557828
Query: 184 ctgggtgctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcac 243
|||||| || ||||| || ||||| |||||||||||||| ||||| ||||||| | ||
Sbjct: 22557829 ctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggcaggaggggaaggac 22557888
Query: 244 gccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatctc 291
|| |||||||||| ||||||| | |||||| || |||||||||||||
Sbjct: 22557889 acccaccatcgtctacgtctggtctggcctcgtcgccatcaccatctc 22557936
>gb|CV731588.1|CV731588 FLO--05-K24.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--05-K24,
mRNA sequence
Length = 426
Score = 180 bits (91), Expect = 6e-043
Identities = 193/227 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||| || ||||| |||||||||||||| || |||||||| ||||||||||| ||||||
Sbjct: 423 tacagtgaaatccctcagtggagcaagctcctcggcggcgtgttcttcagcttttgggtg 364
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||||| ||||| ||||| ||||||||||| || ||||| |||| || || || ||||||
Sbjct: 363 ctggctcacctttaccccttcgccaaggggctaatgggaaggagaggacgaacaccgacc 304
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| | |||||||| |||||||||| || |||||||||| ||||||
Sbjct: 303 atcgtcttcgtctggtctggcctccttgccatcaccatttcattgctgtgggttgccatc 244
Query: 311 aacccgccgtcccagaaccagcagattggtgggtcgttcacattccc 357
|| |||||||| |||||| |||||| || || || |||||||||||
Sbjct: 243 aatccgccgtcacagaactcgcagataggcggctccttcacattccc 197
>gb|CA754914.1|CA754914 BR030008000_PLATE_F09_70_078.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030008000_PLATE_F09_70_078.ab1 similar to (AC027037)
putative cellulose synthase [Oryza sativa], mRNA
sequence
Length = 628
Score = 161 bits (81), Expect = 6e-037
Identities = 162/189 (85%)
Strand = Plus / Plus
Query: 103 catcgcggtcgggttcagccgcaccatctacagcgagatcccgcagtggagcaagctgct 162
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 15 catcgccgtcggcttcagccgcaccatctacagcaccatcccgcagtggagcaagcttct 74
Query: 163 gggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcct 222
|| || |||||||||||||||||||| || ||||| || ||||| ||||||||||||||
Sbjct: 75 cggtggagtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggcct 134
Query: 223 gatggggcggaggggccgcacgccgaccatcgtcttcgtctgggcgggcctcctctccat 282
||||| ||||||| | || || |||||||||| ||||||| | |||||| || ||||
Sbjct: 135 catgggcaggaggggaaggacacccaccatcgtctacgtctggtctggcctcgtcgccat 194
Query: 283 caccatctc 291
|||||||||
Sbjct: 195 caccatctc 203
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 138368
Score = 159 bits (80), Expect = 2e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 82191 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 82132
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| |||||||||||||||||||| | || || | |||||| ||| |||
Sbjct: 82131 ctgtgccacctctacccgttcgccaagggcctcctcggccgccgcggccgcgtgcccacc 82072
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| |||||||| ||||||| | |||||| || || ||||| ||||
Sbjct: 82071 atcgtcttcgtctggtcgggcctcatctccatgatcatctccctcctctgggtctacatc 82012
Query: 311 aacccgcc 318
||||||||
Sbjct: 82011 aacccgcc 82004
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 159 bits (80), Expect = 2e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1149321 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 1149262
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| |||||||||||||||||||| | || || | |||||| ||| |||
Sbjct: 1149261 ctgtgccacctctacccgttcgccaagggcctcctcggccgccgcggccgcgtgcccacc 1149202
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| |||||||| ||||||| | |||||| || || ||||| ||||
Sbjct: 1149201 atcgtcttcgtctggtcgggcctcatctccatgatcatctccctcctctgggtctacatc 1149142
Query: 311 aacccgcc 318
||||||||
Sbjct: 1149141 aacccgcc 1149134
>gb|AACV01025238.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025238, whole
genome shotgun sequence
Length = 16638
Score = 159 bits (80), Expect = 2e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 10015 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 9956
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| |||||||||||||||||||| | || || | |||||| ||| |||
Sbjct: 9955 ctgtgccacctctacccgttcgccaagggcctcctcggccgccgcggccgcgtgcccacc 9896
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| |||||||| ||||||| | |||||| || || ||||| ||||
Sbjct: 9895 atcgtcttcgtctggtcgggcctcatctccatgatcatctccctcctctgggtctacatc 9836
Query: 311 aacccgcc 318
||||||||
Sbjct: 9835 aacccgcc 9828
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 159 bits (80), Expect = 2e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 3322158 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 3322099
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| |||||||||||||||||||| | || || | |||||| ||| |||
Sbjct: 3322098 ctgtgccacctctacccgttcgccaagggcctcctcggccgccgcggccgcgtgcccacc 3322039
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| |||||||| ||||||| | |||||| || || ||||| ||||
Sbjct: 3322038 atcgtcttcgtctggtcgggcctcatctccatgatcatctccctcctctgggtctacatc 3321979
Query: 311 aacccgcc 318
||||||||
Sbjct: 3321978 aacccgcc 3321971
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 159 bits (80), Expect = 2e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 18845263 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 18845204
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| |||||||||||||||||||| | || || | |||||| ||| |||
Sbjct: 18845203 ctgtgccacctctacccgttcgccaagggcctcctcggccgccgcggccgcgtgcccacc 18845144
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| |||||||| ||||||| | |||||| || || ||||| ||||
Sbjct: 18845143 atcgtcttcgtctggtcgggcctcatctccatgatcatctccctcctctgggtctacatc 18845084
Query: 311 aacccgcc 318
||||||||
Sbjct: 18845083 aacccgcc 18845076
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 159 bits (80), Expect = 2e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 22637071 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 22637012
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| |||||||||||||||||||| | || || | |||||| ||| |||
Sbjct: 22637011 ctgtgccacctctacccgttcgccaagggcctcctcggccgccgcggccgcgtgcccacc 22636952
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| |||||||| ||||||| | |||||| || || ||||| ||||
Sbjct: 22636951 atcgtcttcgtctggtcgggcctcatctccatgatcatctccctcctctgggtctacatc 22636892
Query: 311 aacccgcc 318
||||||||
Sbjct: 22636891 aacccgcc 22636884
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 159 bits (80), Expect = 2e-036
Identities = 161/188 (85%)
Strand = Plus / Minus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 22565262 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 22565203
Query: 191 ctggcgcacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgacc 250
||| ||||| |||||||||||||||||||| | || || | |||||| ||| |||
Sbjct: 22565202 ctgtgccacctctacccgttcgccaagggcctcctcggccgccgcggccgcgtgcccacc 22565143
Query: 251 atcgtcttcgtctgggcgggcctcctctccatcaccatctcgctgctgtgggtggccatc 310
||||||||||||||| |||||||| ||||||| | |||||| || || ||||| ||||
Sbjct: 22565142 atcgtcttcgtctggtcgggcctcatctccatgatcatctccctcctctgggtctacatc 22565083
Query: 311 aacccgcc 318
||||||||
Sbjct: 22565082 aacccgcc 22565075
>dbj|AK072260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023005B09, full
insert sequence
Length = 3633
Score = 157 bits (79), Expect = 9e-036
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 3039 gagatcccgcagtacagcaagctgctcggcggcggcttcttcagcttctgggtgctcgcg 3098
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| |||||||||||||||||||| ||||| || | ||||| ||||| |||||||||
Sbjct: 3099 cactactacccgttcgccaagggcctcatgggccgccgcggccggacgcccaccatcgtc 3158
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctc 291
| ||||||||| |||||| ||||||||||| ||||
Sbjct: 3159 tacgtctgggccggcctcatctccatcaccgtctc 3193
>ref|NT_107237.1| Oryza sativa (japonica cultivar-group)
Length = 2924261
Score = 157 bits (79), Expect = 9e-036
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 2724189 gagatcccgcagtacagcaagctgctcggcggcggcttcttcagcttctgggtgctcgcg 2724248
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| |||||||||||||||||||| ||||| || | ||||| ||||| |||||||||
Sbjct: 2724249 cactactacccgttcgccaagggcctcatgggccgccgcggccggacgcccaccatcgtc 2724308
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctc 291
| ||||||||| |||||| ||||||||||| ||||
Sbjct: 2724309 tacgtctgggccggcctcatctccatcaccgtctc 2724343
>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0427E01
Length = 146395
Score = 157 bits (79), Expect = 9e-036
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 22285 gagatcccgcagtacagcaagctgctcggcggcggcttcttcagcttctgggtgctcgcg 22344
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| |||||||||||||||||||| ||||| || | ||||| ||||| |||||||||
Sbjct: 22345 cactactacccgttcgccaagggcctcatgggccgccgcggccggacgcccaccatcgtc 22404
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctc 291
| ||||||||| |||||| ||||||||||| ||||
Sbjct: 22405 tacgtctgggccggcctcatctccatcaccgtctc 22439
>gb|AACV01013818.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013818, whole
genome shotgun sequence
Length = 8867
Score = 157 bits (79), Expect = 9e-036
Identities = 136/155 (87%)
Strand = Plus / Minus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 4856 gagatcccgcagtacagcaagctgctcggcggcggcttcttcagcttctgggtgctcgcg 4797
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| |||||||||||||||||||| ||||| || | ||||| ||||| |||||||||
Sbjct: 4796 cactactacccgttcgccaagggcctcatgggccgccgcggccggacgcccaccatcgtc 4737
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctc 291
| ||||||||| |||||| ||||||||||| ||||
Sbjct: 4736 tacgtctgggccggcctcatctccatcaccgtctc 4702
>gb|CH401212.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000049 genomic
scaffold, whole genome shotgun sequence
Length = 3314418
Score = 157 bits (79), Expect = 9e-036
Identities = 136/155 (87%)
Strand = Plus / Plus
Query: 137 gagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtgctggcg 196
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 1691445 gagatcccgcagtacagcaagctgctcggcggcggcttcttcagcttctgggtgctcgcg 1691504
Query: 197 cacctgtacccgttcgccaagggcctgatggggcggaggggccgcacgccgaccatcgtc 256
||| |||||||||||||||||||| ||||| || | ||||| ||||| |||||||||
Sbjct: 1691505 cactactacccgttcgccaagggcctcatgggccgccgcggccggacgcccaccatcgtc 1691564
Query: 257 ttcgtctgggcgggcctcctctccatcaccatctc 291
| ||||||||| |||||| ||||||||||| ||||
Sbjct: 1691565 tacgtctgggccggcctcatctccatcaccgtctc 1691599
>gb|AU082190.1|AU082190 AU082190 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5075, mRNA sequence
Length = 483
Score = 121 bits (61), Expect = 5e-025
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct: 381 tacagcgagttcccgcagtggagcaagctgctcggcggcgccntcttcagcttctgggtg 440
Query: 191 ctggcgcacctgtacccgttcgccaagggcct 222
||| ||||| ||||||||||||||||||||
Sbjct: 441 ctgtgccacctctacccgttcgccaagggcct 472
>gb|AU082165.1|AU082165 AU082165 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10346, mRNA sequence
Length = 345
Score = 119 bits (60), Expect = 2e-024
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 131 tacagcgagatcccgcagtggagcaagctgctgggcggcgtcttcttcagcttctgggtg 190
||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 237 tacagcgagttcccgcagtggagcaagctgctcggcggcgccttcttcagcttctgggtg 296
Query: 191 ctggcgcacctgtacccgttcgccaagg 218
||| ||||| ||||||||||||||||
Sbjct: 297 ctgtgccacctctacccgttcgccaagg 324
>gb|AQ690930.1|AQ690930 nbxb0083H24r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0083H24r, DNA sequence
Length = 720
Score = 99.6 bits (50), Expect = 2e-018
Identities = 104/122 (85%)
Strand = Plus / Plus
Query: 170 gtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcctgatgggg 229
|||||||||||||||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 10 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggc 69
Query: 230 cggaggggccgcacgccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatc 289
||||||| | || || |||||||||| ||||||| | |||||| || |||||||||||
Sbjct: 70 aggaggggaaggacacccaccatcgtctacgtctggtctggcctcgtcgccatcaccatc 129
Query: 290 tc 291
||
Sbjct: 130 tc 131
>gb|AQ795409.1|AQ795409 nbxb0056G17r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0056G17r, DNA sequence
Length = 823
Score = 99.6 bits (50), Expect = 2e-018
Identities = 104/122 (85%)
Strand = Plus / Plus
Query: 170 gtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcctgatgggg 229
|||||||||||||||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 10 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggc 69
Query: 230 cggaggggccgcacgccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatc 289
||||||| | || || |||||||||| ||||||| | |||||| || |||||||||||
Sbjct: 70 aggaggggaaggacacccaccatcgtctacgtctggtctggcctcgtcgccatcaccatc 129
Query: 290 tc 291
||
Sbjct: 130 tc 131
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence,
complete sequence
Length = 139999
Score = 99.6 bits (50), Expect = 2e-018
Identities = 104/122 (85%)
Strand = Plus / Plus
Query: 170 gtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggcctgatgggg 229
|||||||||||||||||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct: 16 gtcttcttcagcttctgggtcctcgcgcatctctaccccttcgccaagggcctcatgggc 75
Query: 230 cggaggggccgcacgccgaccatcgtcttcgtctgggcgggcctcctctccatcaccatc 289
||||||| | || || |||||||||| ||||||| | |||||| || |||||||||||
Sbjct: 76 aggaggggaaggacacccaccatcgtctacgtctggtctggcctcgtcgccatcaccatc 135
Query: 290 tc 291
||
Sbjct: 136 tc 137
>gb|AU078363.1|AU078363 AU078363 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10346_1A, mRNA sequence
Length = 359
Score = 60.0 bits (30), Expect = 2e-006
Identities = 43/46 (93%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 141 tcccgcagtggagcaagctgctgggcggcgtct-tcttcagcttct 185
|||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct: 292 tcccgcagtggagcaagctgctcggcggcgcctntcttcagcttct 337
>dbj|AK065259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J18, full
insert sequence
Length = 3707
Score = 42.1 bits (21), Expect = 0.36
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 164 ggcggcgtcttcttcagcttctgggtgctggcgcacctgtacccgttcgccaagggc 220
|||||||| ||||||| ||||||||| || ||||| ||||| ||||||||||||
Sbjct: 2919 ggcggcgtgttcttcaacttctgggtcctcttccacctctaccccttcgccaagggc 2975
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,093,370
Number of Sequences: 438736
Number of extensions: 1093370
Number of successful extensions: 8303
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7956
Number of HSP's gapped (non-prelim): 336
length of query: 635
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 614
effective length of database: 2,791,206,460
effective search space: 1713800766440
effective search space used: 1713800766440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)