BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485944.3.1
(991 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_195328.1| Oryza sativa (japonica cultivar-group) put... 353 1e-094
dbj|AK068221.1| Oryza sativa (japonica cultivar-group) cDNA... 345 3e-092
gb|CB653863.1|CB653863 OSJNEc05E18.f OSJNEc Oryza sativa (j... 337 7e-090
gb|CF318418.1|CF318418 HD--08-I16.b1 OsHDAC1-overexpressing... 212 3e-052
gb|AC104322.4| Oryza sativa chromosome 10 BAC OSJNBb0005F01... 176 1e-041
gb|AACV01021058.1| Oryza sativa (japonica cultivar-group) c... 176 1e-041
ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chr... 176 1e-041
gb|CH401245.1| Oryza sativa (japonica cultivar-group) chrom... 176 1e-041
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 176 1e-041
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 176 1e-041
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 176 1e-041
gb|AC104845.2| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
gb|AC146766.2| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 163 2e-037
gb|AACV01023683.1| Oryza sativa (japonica cultivar-group) c... 163 2e-037
gb|CH401265.1| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 163 2e-037
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 163 2e-037
gb|CB000195.1|CB000195 S345T_B09 Rice cold stress germinati... 86 4e-014
gb|CA999443.1|CA999443 S234H_F02 Rice cold stress germinati... 84 2e-013
gb|CB000206.1|CB000206 S345T_B11 Rice cold stress germinati... 84 2e-013
gb|CB000858.1|CB000858 S345K_C02 Rice cold stress germinati... 84 2e-013
>ref|NM_195328.1| Oryza sativa (japonica cultivar-group) putative cinnamyl alcohol
dehydrogenase (OSJNBb0005F01.4), mRNA
Length = 1257
Score = 353 bits (178), Expect = 1e-094
Identities = 490/594 (82%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttctggagttctctcaccacacagttttaaccgcagagca 446
||||||||||||||||||||||| || | ||||| || ||| || |||||||| ||
Sbjct: 109 gcttgggcagcgagagatccttcagggatcctctccccgtacaagttcaaccgcagggct 168
Query: 447 gtgcaaagcggcgatgtttcgctgaagatcatatactgtggagtctgttatgcagacgtt 506
|| ||||| | ||||||||| ||| ||||| | ||||||| || |||||||| || |||
Sbjct: 169 gtacaaagtgacgatgtttccttgaggatcacacactgtggtgtttgttatgctgatgtt 228
Query: 507 gcttggacgcggaataagctcaatgattcaaaatatcctttggttcctgggcatgagata 566
|| ||||| |||||| ||||| |||| | || ||||| || |||||||||||||||
Sbjct: 229 gcatggacaaggaatatactcaacaattcgatgtaccctttagtccctgggcatgagata 288
Query: 567 gctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgta 626
|| |||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 289 gcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgggtgaccatgta 348
Query: 627 ggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaatatctctctagac 686
|||||||| ||||| ||||| || ||||| || |||||||||||||||| |||||||||
Sbjct: 349 ggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaatagctctctagag 408
Query: 687 aaccattgcccaaaagcagtttatactttcaatggcattgatacagatggaactgtcaca 746
||| | ||| || || || | ||||||||||| |||| || ||||| |||||||||
Sbjct: 409 aactactgctcacaacatgtcttcactttcaatggtgttgacactgatgggactgtcaca 468
Query: 747 aaggggggttactccactcacattgtagtccatgaaaggtattgcttcaaaatacccgat 806
||||| || || || |||||||| ||||| ||||| ||||||||||| |||||||| |||
Sbjct: 469 aagggaggatattctactcacatagtagtacatgagaggtattgctttaaaatacctgat 528
Query: 807 ggctaccctttggcgaaggcagcacctcttctgtgtgctggaataaccgtgtatactcca 866
||||||||||||| |||||||||||| | || |||||||| || || || |||| |||
Sbjct: 529 ggctaccctttggaaaaggcagcacctttactttgtgctggcatcactgtatatagtccg 588
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
|||||||| || || |||||||| || || |||||||| || |||||||| ||||||||
Sbjct: 589 atgatgcggcataatatgaaccagccagggaagtcactcggcgtcattggacttggtggc 648
Query: 927 ctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtt 980
||||||||||||| || |||||||| ||||| ||||| || || |||||||||
Sbjct: 649 ttgggtcacatggcagtaaaatttgggaaagcctttggactgaaagtcacagtt 702
>dbj|AK068221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135D23, full
insert sequence
Length = 1443
Score = 345 bits (174), Expect = 3e-092
Identities = 489/594 (82%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttctggagttctctcaccacacagttttaaccgcagagca 446
||||||||||||||||||||||| || | ||||| || ||| || |||||||| ||
Sbjct: 177 gcttgggcagcgagagatccttcagggatcctctccccgtacaagttcaaccgcagggct 236
Query: 447 gtgcaaagcggcgatgtttcgctgaagatcatatactgtggagtctgttatgcagacgtt 506
|| ||||| | ||||||||| ||| ||||| | ||||||| || |||||||| || |||
Sbjct: 237 gtacaaagtgacgatgtttccttgaggatcacacactgtggtgtttgttatgctgatgtt 296
Query: 507 gcttggacgcggaataagctcaatgattcaaaatatcctttggttcctgggcatgagata 566
|| ||||| |||||| ||||| |||| | || ||||| || ||||||||||||||
Sbjct: 297 gcatggacaaggaatatactcaacaattcgatgtaccctttagtcgctgggcatgagata 356
Query: 567 gctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgta 626
|| |||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 357 gcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgggtgaccatgta 416
Query: 627 ggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaatatctctctagac 686
|||||||| ||||| ||||| || ||||| || |||||||||||||||| |||||||||
Sbjct: 417 ggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaatagctctctagag 476
Query: 687 aaccattgcccaaaagcagtttatactttcaatggcattgatacagatggaactgtcaca 746
||| | ||| || || || | ||||||||||| |||| || ||||| |||||||||
Sbjct: 477 aactactgctcacaacatgtcttcactttcaatggtgttgacactgatgggactgtcaca 536
Query: 747 aaggggggttactccactcacattgtagtccatgaaaggtattgcttcaaaatacccgat 806
||||| || || || |||||||| ||||| ||||| ||||||||||| |||||||| |||
Sbjct: 537 aagggaggatattctactcacatagtagtacatgagaggtattgctttaaaatacctgat 596
Query: 807 ggctaccctttggcgaaggcagcacctcttctgtgtgctggaataaccgtgtatactcca 866
||||||||||||| |||||||||||| | || |||||||| || || || |||| |||
Sbjct: 597 ggctaccctttggaaaaggcagcacctttactttgtgctggcatcactgtatatagtccg 656
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
|||||||| || || |||||||| || || |||||||| || |||||||| ||||||||
Sbjct: 657 atgatgcggcataatatgaaccagccagggaagtcactcggcgtcattggacttggtggc 716
Query: 927 ctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtt 980
||||||||||||| || |||||||| ||||| ||||| || || |||||||||
Sbjct: 717 ttgggtcacatggcagtaaaatttgggaaagcctttggactgaaagtcacagtt 770
>gb|CB653863.1|CB653863 OSJNEc05E18.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc05E18 5', mRNA sequence
Length = 727
Score = 337 bits (170), Expect = 7e-090
Identities = 476/578 (82%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttctggagttctctcaccacacagttttaaccgcagagca 446
||||||||||||||||||||||| || | ||||| || ||| || |||||||| ||
Sbjct: 147 gcttgggcagcgagagatccttcagggatcctctccccgtacaagttcaaccgcagggct 206
Query: 447 gtgcaaagcggcgatgtttcgctgaagatcatatactgtggagtctgttatgcagacgtt 506
|| ||||| | ||||||||| ||| ||||| | ||||||| || |||||||| || |||
Sbjct: 207 gtacaaagtgacgatgtttccttgaggatcacacactgtggtgtttgttatgctgatgtt 266
Query: 507 gcttggacgcggaataagctcaatgattcaaaatatcctttggttcctgggcatgagata 566
|| ||||| |||||| ||||| |||| | || ||||| || |||||||||||||||
Sbjct: 267 gcatggacaaggaatatactcaacaattcgatgtaccctttagtccctgggcatgagata 326
Query: 567 gctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgta 626
|| |||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 327 gcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgggtgaccatgta 386
Query: 627 ggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaatatctctctagac 686
|||||||| ||||| ||||| || ||||| || |||||||||||||||| |||||||||
Sbjct: 387 ggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaatagctctctagag 446
Query: 687 aaccattgcccaaaagcagtttatactttcaatggcattgatacagatggaactgtcaca 746
||| | ||| || || || | ||||||||||| |||| || ||||| |||||||||
Sbjct: 447 aactactgctcacaacatgtcttcactttcaatggtgttgacactgatgggactgtcaca 506
Query: 747 aaggggggttactccactcacattgtagtccatgaaaggtattgcttcaaaatacccgat 806
||||| || || || |||||||| ||||| ||||| ||||||||||| |||||||| |||
Sbjct: 507 aagggaggatattctactcacatagtagtacatgagaggtattgctttaaaatacctgat 566
Query: 807 ggctaccctttggcgaaggcagcacctcttctgtgtgctggaataaccgtgtatactcca 866
||||||||||||| |||||||||||| | || |||||||| || || || |||| |||
Sbjct: 567 ggctaccctttggaaaaggcagcacctttactttgtgctggcatcactgtatatagtccg 626
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
|||||||| || || |||||||| || || |||||||| || |||||||| ||||||||
Sbjct: 627 atgatgcggcataatatgaaccagccagggaagtcactcggcgtcattggacttggtggc 686
Query: 927 ctgggtcacatggctgtgaaatttggtaaagcatttgg 964
|||||| |||||| || |||||||| ||||| |||||
Sbjct: 687 ttgggtcccatggcagtaaaatttgggaaagcctttgg 724
>gb|CF318418.1|CF318418 HD--08-I16.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--08-I16, mRNA sequence
Length = 563
Score = 212 bits (107), Expect = 3e-052
Identities = 323/395 (81%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttctggagttctctcaccacacagttttaaccgcagagca 446
||||||||||||||||||||||| || | ||||| || ||| || |||||||| ||
Sbjct: 169 gcttgggcagcgagagatccttcagggatcctctccccgtacaagttcaaccgcagggct 228
Query: 447 gtgcaaagcggcgatgtttcgctgaagatcatatactgtggagtctgttatgcagacgtt 506
|| ||||| | ||||||||| ||| ||||| | ||||||| || |||||||| || |||
Sbjct: 229 gtacaaagtgacgatgtttccttgaggatcacacactgtggtgtttgttatgctgatgtt 288
Query: 507 gcttggacgcggaataagctcaatgattcaaaatatcctttggttcctgggcatgagata 566
|| ||||| |||||| ||||| |||| | || ||||| || |||||||||||||||
Sbjct: 289 gcatggacaaggaatatactcaacaattcgatgtaccctttagtccctgggcatgagata 348
Query: 567 gctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgggtgaccatgta 626
|| |||||||||||| ||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 349 gcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgggtgaccatgta 408
Query: 627 ggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaatatctctctagac 686
|||||||| ||||| ||||| || ||||| || |||||||||||||||| |||||||||
Sbjct: 409 ggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaatagctctctagag 468
Query: 687 aaccattgcccaaaagcagtttatactttcaatggcattgatacagatggaactgtcaca 746
||| | ||| || || || | ||||||||||| |||| || ||||| |||||||||
Sbjct: 469 aactactgctcacaacatgtcttcactttcaatggtgttgacactgatgggactgtcaca 528
Query: 747 aaggggggttactccactcacattgtagtccatga 781
||||| || || || |||||||| ||||| |||||
Sbjct: 529 aagggaggatattctactcacatagtagtacatga 563
>gb|AC104322.4| Oryza sativa chromosome 10 BAC OSJNBb0005F01 genomic sequence, complete
sequence
Length = 151428
Score = 176 bits (89), Expect = 1e-041
Identities = 197/233 (84%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
||||||||||||| |||||||||||| ||||||||||||| ||||| |||| |||||||
Sbjct: 127815 ggcatgagatagcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgg 127874
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 127875 gtgaccatgtaggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaata 127934
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||| | ||| || || || | ||||||||||| |||| || ||||
Sbjct: 127935 gctctctagagaactactgctcacaacatgtcttcactttcaatggtgttgacactgatg 127994
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggtat 788
| |||||||||||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 127995 ggactgtcacaaagggaggatattctactcacatagtagtacatgagaggtat 128047
Score = 147 bits (74), Expect = 1e-032
Identities = 167/198 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||||||||| |||||||| |||||||||||||||| |||||||||||| | || |||
Sbjct: 128301 aggtattgctttaaaatacctgatggctaccctttggaaaaggcagcacctttactttgt 128360
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
||||| || || || |||| ||| |||||||| || || |||||||| || || ||||||
Sbjct: 128361 gctggcatcactgtatatagtccgatgatgcggcataatatgaaccagccagggaagtca 128420
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
|| || |||||||| |||||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 128421 ctcggcgtcattggacttggtggcttgggtcacatggcagtaaaatttgggaaagccttt 128480
Query: 963 ggtcttaaggtcacagtt 980
|| || || |||||||||
Sbjct: 128481 ggactgaaagtcacagtt 128498
Score = 46.1 bits (23), Expect = 0.036
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttc 409
|||||||||||||||||||||||
Sbjct: 127114 gcttgggcagcgagagatccttc 127136
>gb|AACV01021058.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021058, whole
genome shotgun sequence
Length = 28159
Score = 176 bits (89), Expect = 1e-041
Identities = 197/233 (84%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
||||||||||||| |||||||||||| ||||||||||||| ||||| |||| |||||||
Sbjct: 12860 ggcatgagatagcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgg 12919
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 12920 gtgaccatgtaggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaata 12979
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||| | ||| || || || | ||||||||||| |||| || ||||
Sbjct: 12980 gctctctagagaactactgctcacaacatgtcttcactttcaatggtgttgacactgatg 13039
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggtat 788
| |||||||||||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 13040 ggactgtcacaaagggaggatattctactcacatagtagtacatgagaggtat 13092
Score = 147 bits (74), Expect = 1e-032
Identities = 167/198 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||||||||| |||||||| |||||||||||||||| |||||||||||| | || |||
Sbjct: 13346 aggtattgctttaaaatacctgatggctaccctttggaaaaggcagcacctttactttgt 13405
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
||||| || || || |||| ||| |||||||| || || |||||||| || || ||||||
Sbjct: 13406 gctggcatcactgtatatagtccgatgatgcggcataatatgaaccagccagggaagtca 13465
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
|| || |||||||| |||||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 13466 ctcggcgtcattggacttggtggcttgggtcacatggcagtaaaatttgggaaagccttt 13525
Query: 963 ggtcttaaggtcacagtt 980
|| || || |||||||||
Sbjct: 13526 ggactgaaagtcacagtt 13543
Score = 46.1 bits (23), Expect = 0.036
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttc 409
|||||||||||||||||||||||
Sbjct: 12159 gcttgggcagcgagagatccttc 12181
>ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2697502
Score = 176 bits (89), Expect = 1e-041
Identities = 197/233 (84%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
||||||||||||| |||||||||||| ||||||||||||| ||||| |||| |||||||
Sbjct: 2190037 ggcatgagatagcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgg 2190096
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 2190097 gtgaccatgtaggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaata 2190156
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||| | ||| || || || | ||||||||||| |||| || ||||
Sbjct: 2190157 gctctctagagaactactgctcacaacatgtcttcactttcaatggtgttgacactgatg 2190216
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggtat 788
| |||||||||||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 2190217 ggactgtcacaaagggaggatattctactcacatagtagtacatgagaggtat 2190269
Score = 147 bits (74), Expect = 1e-032
Identities = 167/198 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||||||||| |||||||| |||||||||||||||| |||||||||||| | || |||
Sbjct: 2190523 aggtattgctttaaaatacctgatggctaccctttggaaaaggcagcacctttactttgt 2190582
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
||||| || || || |||| ||| |||||||| || || |||||||| || || ||||||
Sbjct: 2190583 gctggcatcactgtatatagtccgatgatgcggcataatatgaaccagccagggaagtca 2190642
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
|| || |||||||| |||||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 2190643 ctcggcgtcattggacttggtggcttgggtcacatggcagtaaaatttgggaaagccttt 2190702
Query: 963 ggtcttaaggtcacagtt 980
|| || || |||||||||
Sbjct: 2190703 ggactgaaagtcacagtt 2190720
Score = 46.1 bits (23), Expect = 0.036
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttc 409
|||||||||||||||||||||||
Sbjct: 2189336 gcttgggcagcgagagatccttc 2189358
>gb|CH401245.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000082 genomic
scaffold, whole genome shotgun sequence
Length = 3323203
Score = 176 bits (89), Expect = 1e-041
Identities = 197/233 (84%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
||||||||||||| |||||||||||| ||||||||||||| ||||| |||| |||||||
Sbjct: 2841125 ggcatgagatagcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgg 2841184
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 2841185 gtgaccatgtaggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaata 2841244
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||| | ||| || || || | ||||||||||| |||| || ||||
Sbjct: 2841245 gctctctagagaactactgctcacaacatgtcttcactttcaatggtgttgacactgatg 2841304
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggtat 788
| |||||||||||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 2841305 ggactgtcacaaagggaggatattctactcacatagtagtacatgagaggtat 2841357
Score = 147 bits (74), Expect = 1e-032
Identities = 167/198 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||||||||| |||||||| |||||||||||||||| |||||||||||| | || |||
Sbjct: 2841611 aggtattgctttaaaatacctgatggctaccctttggaaaaggcagcacctttactttgt 2841670
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
||||| || || || |||| ||| |||||||| || || |||||||| || || ||||||
Sbjct: 2841671 gctggcatcactgtatatagtccgatgatgcggcataatatgaaccagccagggaagtca 2841730
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
|| || |||||||| |||||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 2841731 ctcggcgtcattggacttggtggcttgggtcacatggcagtaaaatttgggaaagccttt 2841790
Query: 963 ggtcttaaggtcacagtt 980
|| || || |||||||||
Sbjct: 2841791 ggactgaaagtcacagtt 2841808
Score = 46.1 bits (23), Expect = 0.036
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttc 409
|||||||||||||||||||||||
Sbjct: 2840424 gcttgggcagcgagagatccttc 2840446
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 176 bits (89), Expect = 1e-041
Identities = 197/233 (84%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
||||||||||||| |||||||||||| ||||||||||||| ||||| |||| |||||||
Sbjct: 6109576 ggcatgagatagcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgg 6109635
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 6109636 gtgaccatgtaggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaata 6109695
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||| | ||| || || || | ||||||||||| |||| || ||||
Sbjct: 6109696 gctctctagagaactactgctcacaacatgtcttcactttcaatggtgttgacactgatg 6109755
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggtat 788
| |||||||||||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 6109756 ggactgtcacaaagggaggatattctactcacatagtagtacatgagaggtat 6109808
Score = 147 bits (74), Expect = 1e-032
Identities = 167/198 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||||||||| |||||||| |||||||||||||||| |||||||||||| | || |||
Sbjct: 6110062 aggtattgctttaaaatacctgatggctaccctttggaaaaggcagcacctttactttgt 6110121
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
||||| || || || |||| ||| |||||||| || || |||||||| || || ||||||
Sbjct: 6110122 gctggcatcactgtatatagtccgatgatgcggcataatatgaaccagccagggaagtca 6110181
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
|| || |||||||| |||||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 6110182 ctcggcgtcattggacttggtggcttgggtcacatggcagtaaaatttgggaaagccttt 6110241
Query: 963 ggtcttaaggtcacagtt 980
|| || || |||||||||
Sbjct: 6110242 ggactgaaagtcacagtt 6110259
Score = 46.1 bits (23), Expect = 0.036
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttc 409
|||||||||||||||||||||||
Sbjct: 6108875 gcttgggcagcgagagatccttc 6108897
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 176 bits (89), Expect = 1e-041
Identities = 197/233 (84%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
||||||||||||| |||||||||||| ||||||||||||| ||||| |||| |||||||
Sbjct: 6192410 ggcatgagatagcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgg 6192469
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 6192470 gtgaccatgtaggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaata 6192529
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||| | ||| || || || | ||||||||||| |||| || ||||
Sbjct: 6192530 gctctctagagaactactgctcacaacatgtcttcactttcaatggtgttgacactgatg 6192589
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggtat 788
| |||||||||||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 6192590 ggactgtcacaaagggaggatattctactcacatagtagtacatgagaggtat 6192642
Score = 147 bits (74), Expect = 1e-032
Identities = 167/198 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||||||||| |||||||| |||||||||||||||| |||||||||||| | || |||
Sbjct: 6192896 aggtattgctttaaaatacctgatggctaccctttggaaaaggcagcacctttactttgt 6192955
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
||||| || || || |||| ||| |||||||| || || |||||||| || || ||||||
Sbjct: 6192956 gctggcatcactgtatatagtccgatgatgcggcataatatgaaccagccagggaagtca 6193015
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
|| || |||||||| |||||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 6193016 ctcggcgtcattggacttggtggcttgggtcacatggcagtaaaatttgggaaagccttt 6193075
Query: 963 ggtcttaaggtcacagtt 980
|| || || |||||||||
Sbjct: 6193076 ggactgaaagtcacagtt 6193093
Score = 46.1 bits (23), Expect = 0.036
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttc 409
|||||||||||||||||||||||
Sbjct: 6191709 gcttgggcagcgagagatccttc 6191731
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 176 bits (89), Expect = 1e-041
Identities = 197/233 (84%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
||||||||||||| |||||||||||| ||||||||||||| ||||| |||| |||||||
Sbjct: 6193996 ggcatgagatagcaggagttgtaactgaggttggtgcagacgtcaagagcttcaaagtgg 6194055
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
||||||||||||||||||| ||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 6194056 gtgaccatgtaggtgttggcacatacgtgaattcatgccgggactgtgagaactgcaata 6194115
Query: 676 tctctctagacaaccattgcccaaaagcagtttatactttcaatggcattgatacagatg 735
||||||||| ||| | ||| || || || | ||||||||||| |||| || ||||
Sbjct: 6194116 gctctctagagaactactgctcacaacatgtcttcactttcaatggtgttgacactgatg 6194175
Query: 736 gaactgtcacaaaggggggttactccactcacattgtagtccatgaaaggtat 788
| |||||||||||||| || || || |||||||| ||||| ||||| ||||||
Sbjct: 6194176 ggactgtcacaaagggaggatattctactcacatagtagtacatgagaggtat 6194228
Score = 147 bits (74), Expect = 1e-032
Identities = 167/198 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||||||||| |||||||| |||||||||||||||| |||||||||||| | || |||
Sbjct: 6194482 aggtattgctttaaaatacctgatggctaccctttggaaaaggcagcacctttactttgt 6194541
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
||||| || || || |||| ||| |||||||| || || |||||||| || || ||||||
Sbjct: 6194542 gctggcatcactgtatatagtccgatgatgcggcataatatgaaccagccagggaagtca 6194601
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
|| || |||||||| |||||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 6194602 ctcggcgtcattggacttggtggcttgggtcacatggcagtaaaatttgggaaagccttt 6194661
Query: 963 ggtcttaaggtcacagtt 980
|| || || |||||||||
Sbjct: 6194662 ggactgaaagtcacagtt 6194679
Score = 46.1 bits (23), Expect = 0.036
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 387 gcttgggcagcgagagatccttc 409
|||||||||||||||||||||||
Sbjct: 6193295 gcttgggcagcgagagatccttc 6193317
>gb|AC104845.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBb0091E08, complete sequence
Length = 119526
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 68297 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 68356
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 68357 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 68416
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 68417 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 68476
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 68477 ggactcaaagtgacagtttttagtac 68502
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 65026 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 65085
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 65086 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 65145
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 65146 gctctctggagaacca 65161
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 64516 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 64575
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 64576 aatatgttcaacgattcgatataccctttggttcctggg 64614
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 63993 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 64050
>gb|AC146766.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
B1112E06, complete sequence
Length = 177488
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 43444 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 43503
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 43504 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 43563
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 43564 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 43623
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 43624 ggactcaaagtgacagtttttagtac 43649
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 40173 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 40232
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 40233 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 40292
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 40293 gctctctggagaacca 40308
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 39663 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 39722
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 39723 aatatgttcaacgattcgatataccctttggttcctggg 39761
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 39140 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 39197
>ref|NT_107132.1| Oryza sativa (japonica cultivar-group)
Length = 2337234
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 2110534 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 2110593
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 2110594 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 2110653
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 2110654 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 2110713
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 2110714 ggactcaaagtgacagtttttagtac 2110739
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 2107263 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 2107322
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 2107323 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 2107382
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 2107383 gctctctggagaacca 2107398
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 2106753 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 2106812
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 2106813 aatatgttcaacgattcgatataccctttggttcctggg 2106851
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 2106230 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 2106287
>gb|AACV01023683.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023683,
whole genome shotgun sequence
Length = 22311
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Minus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 662 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 603
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 602 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 543
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 542 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 483
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 482 ggactcaaagtgacagtttttagtac 457
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Minus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 3933 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 3874
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 3873 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 3814
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 3813 gctctctggagaacca 3798
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 4443 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 4384
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 4383 aatatgttcaacgattcgatataccctttggttcctggg 4345
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 4966 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 4909
>gb|CH401265.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000102 genomic
scaffold, whole genome shotgun sequence
Length = 1659275
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Minus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 1596780 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 1596721
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 1596720 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 1596661
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 1596660 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 1596601
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 1596600 ggactcaaagtgacagtttttagtac 1596575
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Minus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 1600051 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 1599992
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 1599991 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 1599932
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 1599931 gctctctggagaacca 1599916
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 1600561 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 1600502
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 1600501 aatatgttcaacgattcgatataccctttggttcctggg 1600463
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 1601084 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 1601027
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Minus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 20868270 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 20868211
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 20868210 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 20868151
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 20868150 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 20868091
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 20868090 ggactcaaagtgacagtttttagtac 20868065
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Minus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 20871541 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 20871482
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 20871481 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 20871422
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 20871421 gctctctggagaacca 20871406
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Minus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 20872051 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 20871992
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 20871991 aatatgttcaacgattcgatataccctttggttcctggg 20871953
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 20872574 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 20872517
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 23452784 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 23452843
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 23452844 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 23452903
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 23452904 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 23452963
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 23452964 ggactcaaagtgacagtttttagtac 23452989
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 23449513 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 23449572
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 23449573 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 23449632
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 23449633 gctctctggagaacca 23449648
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 23449003 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 23449062
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 23449063 aatatgttcaacgattcgatataccctttggttcctggg 23449101
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 23448480 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 23448537
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 163 bits (82), Expect = 2e-037
Identities = 175/206 (84%)
Strand = Plus / Plus
Query: 783 aggtattgcttcaaaatacccgatggctaccctttggcgaaggcagcacctcttctgtgt 842
||||| ||||| |||||||| | || |||||||||| | ||||||||||| || || |||
Sbjct: 23762694 aggtactgctttaaaatacctgctgactaccctttgtcaaaggcagcaccactgctttgt 23762753
Query: 843 gctggaataaccgtgtatactccaatgatgcgacacaacatgaaccaacctggaaagtca 902
|| ||||| ||||| |||||||||||||| ||||| |||||||||||||| || ||||||
Sbjct: 23762754 gcgggaattaccgtatatactccaatgatacgacataacatgaaccaaccagggaagtca 23762813
Query: 903 cttggggtcattggtcttggtggtctgggtcacatggctgtgaaatttggtaaagcattt 962
||||| |||||||| || ||||| ||||||||||||| || |||||||| ||||| |||
Sbjct: 23762814 cttggcgtcattggactaggtgggttgggtcacatggcagtaaaatttgggaaagccttt 23762873
Query: 963 ggtcttaaggtcacagttttcagtac 988
|| || || || |||||||| |||||
Sbjct: 23762874 ggactcaaagtgacagtttttagtac 23762899
Score = 111 bits (56), Expect = 7e-022
Identities = 116/136 (85%)
Strand = Plus / Plus
Query: 556 ggcatgagatagctggagttgtaactcaggttggtgcagatgtcaaaggctttaaagtgg 615
|||| ||||||||||||||||||||| ||||||||||||| ||||| || || |||||||
Sbjct: 23759423 ggcacgagatagctggagttgtaactgaggttggtgcagacgtcaaggggttcaaagtgg 23759482
Query: 616 gtgaccatgtaggtgttggaacatatgtgaactcttgccgtgattgtgagaactgcaata 675
| ||||||||||||||||| ||||||||| || || | || || |||||||||||||
Sbjct: 23759483 gcgaccatgtaggtgttggcgtatatgtgaattcatgtcaggactgcgagaactgcaata 23759542
Query: 676 tctctctagacaacca 691
|||||| || |||||
Sbjct: 23759543 gctctctggagaacca 23759558
Score = 54.0 bits (27), Expect = 1e-004
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 459 gatgtttcgctgaagatcatatactgtggagtctgttatgcagacgttgcttggacgcgg 518
|||||||| ||| ||||| | |||||||||| |||||||| || || |||||| |||
Sbjct: 23758913 gatgtttctttgaggatcacacactgtggagtatgttatgctgatgtcatttggacacgg 23758972
Query: 519 aataagctcaatgattcaaaatatcctttggttcctggg 557
|||| | |||| ||||| | ||| |||||||||||||||
Sbjct: 23758973 aatatgttcaacgattcgatataccctttggttcctggg 23759011
Score = 52.0 bits (26), Expect = 6e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 352 acatggctgctgaatcagagaacggcaactgcaaagcttgggcagcgagagatccttc 409
||||||||||||||| | || |||||||| | |||||||||||||||||||||||
Sbjct: 23758390 acatggctgctgaatgtgggagtggcaactgtgatgcttgggcagcgagagatccttc 23758447
>gb|CB000195.1|CB000195 S345T_B09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 783
Score = 85.7 bits (43), Expect = 4e-014
Identities = 97/115 (84%)
Strand = Plus / Plus
Query: 866 aatgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtgg 925
||||||||| || || |||||||| || || |||||||| || |||||||| ||||||||
Sbjct: 6 aatgatgcggcataatatgaaccagccagggaagtcactcggcgtcattggacttggtgg 65
Query: 926 tctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtt 980
||||||||||||| || |||||||| ||||| ||||| || || |||||||||
Sbjct: 66 cttgggtcacatggcagtaaaatttgggaaagcctttggactgaaagtcacagtt 120
>gb|CA999443.1|CA999443 S234H_F02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 248
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
|||||||| || || |||||||| || || |||||||| || |||||||| ||||||||
Sbjct: 5 atgatgcggcataatatgaaccagccagggaagtcactcggcgtcattggacttggtggc 64
Query: 927 ctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtt 980
||||||||||||| || |||||||| ||||| ||||| || || |||||||||
Sbjct: 65 ttgggtcacatggcagtaaaatttgggaaagcctttggactgaaagtcacagtt 118
>gb|CB000206.1|CB000206 S345T_B11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 816
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
|||||||| || || |||||||| || || |||||||| || |||||||| ||||||||
Sbjct: 7 atgatgcggcataatatgaaccagccagggaagtcactcggcgtcattggacttggtggc 66
Query: 927 ctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtt 980
||||||||||||| || |||||||| ||||| ||||| || || |||||||||
Sbjct: 67 ttgggtcacatggcagtaaaatttgggaaagcctttggactgaaagtcacagtt 120
>gb|CB000858.1|CB000858 S345K_C02 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 387
Score = 83.8 bits (42), Expect = 2e-013
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 867 atgatgcgacacaacatgaaccaacctggaaagtcacttggggtcattggtcttggtggt 926
|||||||| || || |||||||| || || |||||||| || |||||||| ||||||||
Sbjct: 5 atgatgcggcataatatgaaccagccagggaagtcactcggcgtcattggacttggtggc 64
Query: 927 ctgggtcacatggctgtgaaatttggtaaagcatttggtcttaaggtcacagtt 980
||||||||||||| || |||||||| ||||| ||||| || || |||||||||
Sbjct: 65 ttgggtcacatggcagtaaaatttgggaaagcctttggactgaaagtcacagtt 118
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,102,456
Number of Sequences: 438736
Number of extensions: 1102456
Number of successful extensions: 4769
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4606
Number of HSP's gapped (non-prelim): 143
length of query: 991
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 970
effective length of database: 2,791,206,460
effective search space: 2707470266200
effective search space used: 2707470266200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)