BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK058585.1| Oryza sativa (japonica cultivar-group) cDNA... 270 2e-069
dbj|AK120926.1| Oryza sativa (japonica cultivar-group) cDNA... 262 4e-067
gb|CF293857.1|CF293857 30DGS--03-C24.b1 Rice leaf plasmid c... 256 3e-065
gb|CD670926.1|CD670926 OsMR347 5MT resistant rice mutant cD... 200 1e-048
gb|CF293858.1|CF293858 30DGS--03-C24.g1 Rice leaf plasmid c... 139 4e-030
gb|AQ291089.1|AQ291089 nbxb0038C02r CUGI Rice BAC Library O... 123 3e-025
emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC O... 123 3e-025
emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC O... 123 3e-025
gb|AC123526.2| Oryza sativa japonica cultivar-group chromos... 123 3e-025
ref|NT_107134.1| Oryza sativa (japonica cultivar-group) 123 3e-025
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 123 3e-025
gb|AACV01022333.1| Oryza sativa (japonica cultivar-group) c... 123 3e-025
gb|AACV01023936.1| Oryza sativa (japonica cultivar-group) c... 123 3e-025
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 123 3e-025
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 123 3e-025
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 123 3e-025
gb|CB680394.1|CB680394 OSJNEf05A10.f OSJNEf Oryza sativa (j... 96 6e-017
dbj|AK101721.1| Oryza sativa (japonica cultivar-group) cDNA... 96 6e-017
ref|NM_189771.1| Oryza sativa (japonica cultivar-group), p... 96 6e-017
gb|DU133949.1|DU133949 UCDRGT3139_5.1 UCD RGT Rice Insertio... 84 2e-013
dbj|AP004319.1| Oryza sativa (japonica cultivar-group) chro... 84 2e-013
gb|AACV01003055.1| Oryza sativa (japonica cultivar-group) c... 84 2e-013
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 84 2e-013
dbj|AP003683.3| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 84 2e-013
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 84 2e-013
gb|D24560.1|D24560 RICR2168A Rice root Oryza sativa (japoni... 82 9e-013
dbj|AK106426.1| Oryza sativa (japonica cultivar-group) cDNA... 78 1e-011
ref|NM_187101.1| Oryza sativa (japonica cultivar-group), mRNA 68 1e-008
gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) c... 62 8e-007
dbj|AP003802.2| Oryza sativa (japonica cultivar-group) geno... 62 8e-007
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 62 8e-007
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 62 8e-007
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 62 8e-007
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 62 8e-007
dbj|AK059734.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.003
ref|XM_474315.1| Oryza sativa (japonica cultivar-group), p... 50 0.003
gb|CF317127.1|CF317127 HD--06-L07.b1 OsHDAC1-overexpressing... 48 0.012
dbj|AK109703.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.012
gb|AACV01010042.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
gb|AACV01010149.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
ref|NT_079863.2| Oryza sativa (japonica cultivar-group) 48 0.012
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.012
emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromoso... 48 0.012
emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromoso... 48 0.012
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.012
gb|AACV01010650.1| Oryza sativa (japonica cultivar-group) c... 44 0.20
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 44 0.20
emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromoso... 44 0.20
emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC... 44 0.20
>dbj|AK058585.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G01, full
insert sequence
Length = 919
Score = 270 bits (136), Expect = 2e-069
Identities = 211/236 (89%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 294 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 353
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
||||||||||| ||||| | | | || || ||||| || ||||||||||| || || |||
Sbjct: 354 aagatcaaggaatcgtcttatttaagggacatcccagttgtgatcatgtcatcggataac 413
Query: 562 attccttcaaggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacct 621
|||||||||||||||||||| |||||||||||||||||||| || || ||||| |||||
Sbjct: 414 attccttcaaggatcaatagatgcctggaggaaggagctgatgaatttttcctcaaacca 473
Query: 622 gtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|| ||||| || ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 474 gttcggctctccgacatgagcaagctgaagccccacatactgaaaagcagatgcaa 529
Score = 161 bits (81), Expect = 1e-036
Identities = 126/141 (89%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 104 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 163
Query: 294 gaggctcctcaagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgct 353
|||||| |||||||||||||| |||||||| |||||||| || |||||||||||||| ||
Sbjct: 164 gaggctactcaagacctcttctttccaagttaccactgttgattccgggagcaaggctct 223
Query: 354 gcagttcctgggcctccatga 374
| ||||| |||| ||||||||
Sbjct: 224 ggagttcttggggctccatga 244
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 343
>dbj|AK120926.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P07, full
insert sequence
Length = 825
Score = 262 bits (132), Expect = 4e-067
Identities = 210/236 (88%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 287 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 346
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
|||||| |||| ||||| | | | || || ||||| || ||||||||||| || || |||
Sbjct: 347 aagatcgaggaatcgtcttatttaagggacatcccagttgtgatcatgtcatcggataac 406
Query: 562 attccttcaaggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacct 621
|||||||||||||||||||| |||||||||||||||||||| || || ||||| |||||
Sbjct: 407 attccttcaaggatcaatagatgcctggaggaaggagctgatgaatttttcctcaaacca 466
Query: 622 gtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|| ||||| || ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 467 gttcggctctccgacatgagcaagctgaagccccacatactgaaaagcagatgcaa 522
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 76 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 135
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 136 gaggctactcaagacctcttctttccaag 164
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 336
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 188 accactgttgattccgggagcaaggctctggagttcttggggctccatga 237
>gb|CF293857.1|CF293857 30DGS--03-C24.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C24, mRNA sequence
Length = 654
Score = 256 bits (129), Expect = 3e-065
Identities = 211/237 (89%), Gaps = 1/237 (0%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 547 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 488
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccg-gtggtgatcatgtcctctgagaa 560
||||||||||| ||||| | | | || || ||||| || ||||||||||| || || ||
Sbjct: 487 aagatcaaggaatcgtcttatttaagggacatccccagttgtgatcatgtcatcggataa 428
Query: 561 cattccttcaaggatcaataggtgcctggaggaaggagctgacgagttcttcctaaaacc 620
||||||||||||||||||||| |||||||||||||||||||| || || ||||| |||||
Sbjct: 427 cattccttcaaggatcaatagatgcctggaggaaggagctgatgaatttttcctcaaacc 368
Query: 621 tgtgcggctatcagacatgaacaagctcaagccccacatactgaaaagcagatgcaa 677
|| ||||| || ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 367 agttcggctctccgacatgagcaagctgaagccccacatactgaaaagcagatgcaa 311
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 498
Score = 60.0 bits (30), Expect = 3e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 317 tccaagtgaccactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
||||||| |||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 654 tccaagttaccactgttgattccgggagcaaggctctggagttcttggggctccatga 597
>gb|CD670926.1|CD670926 OsMR347 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 717
Score = 200 bits (101), Expect = 1e-048
Identities = 207/237 (87%), Gaps = 4/237 (1%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 377 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 436
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
||||||||||| ||||| | | | || || ||||| || ||||||||||| || || |||
Sbjct: 437 aagatcaaggaatcgtcttatttaagggacatcccagttgtgatcatgtcatcggataac 496
Query: 562 attccttcaaggatcaataggtgcctggaggaaggag-ctgacgagttctt-cctaaaac 619
|||||||||||||||||||| |||||||||||||||| |||| || || || ||| ||||
Sbjct: 497 attccttcaaggatcaatagatgcctggaggaaggagcctgatgaatttttccctcaaac 556
Query: 620 ctgtgcggctat-cagacatgaacaagctcaagccccacatactgaaaagcagatgc 675
| || ||||| | | ||||||| |||||| || |||||||||||| |||||||||||
Sbjct: 557 cagttcggctctcccgacatgagcaagctgaacccccacatactg-aaagcagatgc 612
Score = 145 bits (73), Expect = 7e-032
Identities = 124/141 (87%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| | ||| || ||||| || |||||||||||||||||
Sbjct: 187 agaggctccgttccatgtcctggctggggatgatagccttcctgacaggaagctcatcga 246
Query: 294 gaggctcctcaagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgct 353
|||||| |||||||||||||| |||||||| |||||||| || || ||||||||||| ||
Sbjct: 247 gaggctactcaagacctcttctttccaagtaaccactgttgattcggggagcaaggctct 306
Query: 354 gcagttcctgggcctccatga 374
| ||||| |||| ||||||||
Sbjct: 307 ggagttcttggggctccatga 327
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 426
>gb|CF293858.1|CF293858 30DGS--03-C24.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--03-C24, mRNA sequence
Length = 464
Score = 139 bits (70), Expect = 4e-030
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 339 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 398
Query: 502 aagatcaaggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
||||||||||| ||||| | | | || || ||||| || ||||||||||| || || |||
Sbjct: 399 aagatcaaggaatcgtcttatttaagggacatcccagttgtgatcatgtcatcggataac 458
Query: 562 attcct 567
||||||
Sbjct: 459 attcct 464
Score = 129 bits (65), Expect = 4e-027
Identities = 122/141 (86%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||| ||||||||| ||||| || | ||| || ||||||||||||||| |
Sbjct: 149 agaggctccgttccttgtcctggctgtggatgatatccttcctgacaggaagctcatcta 208
Query: 294 gaggctcctcaagacctcttccttccaagtgaccactgtcgactccgggagcaaggcgct 353
||||| |||||||||||||| |||||||| |||||||| || |||||||||||||| ||
Sbjct: 209 taggctactcaagacctcttctttccaagttaccactgttgattccgggagcaaggctct 268
Query: 354 gcagttcctgggcctccatga 374
| ||||| |||| ||||||||
Sbjct: 269 ggagttcttggggctccatga 289
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 388
>gb|AQ291089.1|AQ291089 nbxb0038C02r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0038C02r, DNA sequence
Length = 625
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 412 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 471
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 472 aagatcaagg 481
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 26 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 85
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 86 gaggctactcaagacctcttctttccaag 114
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 461
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 216 accactgttgattcggggagcaaggctctggagttcttggggctccatga 265
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 128619
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 110130 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 110189
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 110190 aagatcaagg 110199
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 109744 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 109803
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 109804 gaggctactcaagacctcttctttccaag 109832
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 111075 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 111134
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 111135 aagctgaagccccacatactgaaaagcagatgcaa 111169
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110130 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 110179
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 110335 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 110387
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 109934 accactgttgattcggggagcaaggctctggagttcttggggctccatga 109983
>emb|AL928752.2|CNS08CBP Oryza sativa chromosome 12, . BAC OSJNBb0034E23 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 107247
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 52782 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 52723
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 52722 aagatcaagg 52713
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 53168 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 53109
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 53108 gaggctactcaagacctcttctttccaag 53080
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 51837 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 51778
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 51777 aagctgaagccccacatactgaaaagcagatgcaa 51743
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52782 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 52733
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 52577 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 52525
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 52978 accactgttgattcggggagcaaggctctggagttcttggggctccatga 52929
>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
complete sequence
Length = 185449
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 68245 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 68304
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 68305 aagatcaagg 68314
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 67837 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 67896
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 67897 gaggctactcaagacctcttctttccaag 67925
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 69190 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 69249
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 69250 aagctgaagccccacatactgaaaagcagatgcaa 69284
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68245 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 68294
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 68450 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 68502
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 68027 accactgttgattccgggagcaaggctctggagttcttggggctccatga 68076
>ref|NT_107134.1| Oryza sativa (japonica cultivar-group)
Length = 568590
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 68245 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 68304
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 68305 aagatcaagg 68314
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 67837 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 67896
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 67897 gaggctactcaagacctcttctttccaag 67925
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 69190 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 69249
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 69250 aagctgaagccccacatactgaaaagcagatgcaa 69284
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68245 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 68294
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 68450 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 68502
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 68027 accactgttgattccgggagcaaggctctggagttcttggggctccatga 68076
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1915391 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 1915450
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 1915451 aagatcaagg 1915460
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1915005 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 1915064
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 1915065 gaggctactcaagacctcttctttccaag 1915093
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 1916336 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 1916395
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 1916396 aagctgaagccccacatactgaaaagcagatgcaa 1916430
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915391 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 1915440
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1915596 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 1915648
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 1915195 accactgttgattcggggagcaaggctctggagttcttggggctccatga 1915244
>gb|AACV01022333.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022333, whole
genome shotgun sequence
Length = 21987
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 10703 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 10762
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 10763 aagatcaagg 10772
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 10295 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 10354
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 10355 gaggctactcaagacctcttctttccaag 10383
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 11648 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 11707
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 11708 aagctgaagccccacatactgaaaagcagatgcaa 11742
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10703 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 10752
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 10908 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 10960
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 10485 accactgttgattccgggagcaaggctctggagttcttggggctccatga 10534
>gb|AACV01023936.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023936, whole
genome shotgun sequence
Length = 34818
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Minus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 20254 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 20195
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 20194 aagatcaagg 20185
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 20640 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 20581
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 20580 gaggctactcaagacctcttctttccaag 20552
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Minus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 19309 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 19250
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 19249 aagctgaagccccacatactgaaaagcagatgcaa 19215
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20254 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 20205
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 20049 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 19997
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 20450 accactgttgattcggggagcaaggctctggagttcttggggctccatga 20401
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1771529 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 1771588
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 1771589 aagatcaagg 1771598
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1771143 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 1771202
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 1771203 gaggctactcaagacctcttctttccaag 1771231
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 1772474 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 1772533
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 1772534 aagctgaagccccacatactgaaaagcagatgcaa 1772568
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771529 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 1771578
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1771734 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 1771786
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 1771333 accactgttgattcggggagcaaggctctggagttcttggggctccatga 1771382
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094 genomic
scaffold, whole genome shotgun sequence
Length = 4775249
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1877684 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 1877743
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 1877744 aagatcaagg 1877753
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1877276 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 1877335
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 1877336 gaggctactcaagacctcttctttccaag 1877364
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 1878629 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 1878688
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 1878689 aagctgaagccccacatactgaaaagcagatgcaa 1878723
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877684 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 1877733
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1877889 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 1877941
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 1877466 accactgttgattccgggagcaaggctctggagttcttggggctccatga 1877515
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1771529 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 1771588
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 1771589 aagatcaagg 1771598
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1771143 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 1771202
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 1771203 gaggctactcaagacctcttctttccaag 1771231
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 1772474 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 1772533
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 1772534 aagctgaagccccacatactgaaaagcagatgcaa 1772568
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771529 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 1771578
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1771734 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 1771786
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 1771333 accactgttgattcggggagcaaggctctggagttcttggggctccatga 1771382
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 2179976 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 2180035
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 2180036 aagatcaagg 2180045
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 2179568 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 2179627
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 2179628 gaggctactcaagacctcttctttccaag 2179656
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 2180921 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 2180980
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 2180981 aagctgaagccccacatactgaaaagcagatgcaa 2181015
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2179976 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 2180025
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 2180181 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 2180233
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 2179758 accactgttgattccgggagcaaggctctggagttcttggggctccatga 2179807
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1996690 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 1996749
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 1996750 aagatcaagg 1996759
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1996282 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 1996341
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 1996342 gaggctactcaagacctcttctttccaag 1996370
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 1997635 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 1997694
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 1997695 aagctgaagccccacatactgaaaagcagatgcaa 1997729
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1996690 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 1996739
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1996895 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 1996947
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 1996472 accactgttgattccgggagcaaggctctggagttcttggggctccatga 1996521
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1915439 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 1915498
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 1915499 aagatcaagg 1915508
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1915053 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 1915112
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 1915113 gaggctactcaagacctcttctttccaag 1915141
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 1916384 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 1916443
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 1916444 aagctgaagccccacatactgaaaagcagatgcaa 1916478
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915439 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 1915488
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1915644 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 1915696
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 1915243 accactgttgattcggggagcaaggctctggagttcttggggctccatga 1915292
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 2004471 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 2004530
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 2004531 aagatcaagg 2004540
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 2004063 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 2004122
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 2004123 gaggctactcaagacctcttctttccaag 2004151
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 2005416 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 2005475
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 2005476 aagctgaagccccacatactgaaaagcagatgcaa 2005510
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004471 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 2004520
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 2004676 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 2004728
Score = 52.0 bits (26), Expect = 8e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || |||||||||||||| ||| ||||| |||| ||||||||
Sbjct: 2004253 accactgttgattccgggagcaaggctctggagttcttggggctccatga 2004302
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 123 bits (62), Expect = 3e-025
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 442 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaag 501
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1915390 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatgatcttctcaag 1915449
Query: 502 aagatcaagg 511
||||||||||
Sbjct: 1915450 aagatcaagg 1915459
Score = 113 bits (57), Expect = 3e-022
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 234 agagactccgttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcga 293
|||| ||||||||||||||||||| ||||| || ||||| || |||||||||||||||||
Sbjct: 1915004 agaggctccgttccatgtcctggctgtggatgatagccttcctgacaggaagctcatcga 1915063
Query: 294 gaggctcctcaagacctcttccttccaag 322
|||||| |||||||||||||| |||||||
Sbjct: 1915064 gaggctactcaagacctcttctttccaag 1915092
Score = 109 bits (55), Expect = 4e-021
Identities = 85/95 (89%)
Strand = Plus / Plus
Query: 583 tgcctggaggaaggagctgacgagttcttcctaaaacctgtgcggctatcagacatgaac 642
|||||||||||||||||||| || || ||||| ||||| || ||||| || ||||||| |
Sbjct: 1916335 tgcctggaggaaggagctgatgaatttttcctcaaaccagttcggctctccgacatgagc 1916394
Query: 643 aagctcaagccccacatactgaaaagcagatgcaa 677
||||| |||||||||||||||||||||||||||||
Sbjct: 1916395 aagctgaagccccacatactgaaaagcagatgcaa 1916429
Score = 99.6 bits (50), Expect = 4e-018
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 93 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915390 gtgaacctgatcatcacagactactgcatgcctggcatgacaggatatga 1915439
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggtg 584
||||| || ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 1915595 atcccagttgtgatcatgtcatcggataacattccttcaaggatcaataggtg 1915647
Score = 44.1 bits (22), Expect = 0.20
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 325 accactgtcgactccgggagcaaggcgctgcagttcctgggcctccatga 374
|||||||| || || ||||||||||| ||| ||||| |||| ||||||||
Sbjct: 1915194 accactgttgattcggggagcaaggctctggagttcttggggctccatga 1915243
>gb|CB680394.1|CB680394 OSJNEf05A10.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf05A10 5', mRNA sequence
Length = 806
Score = 95.6 bits (48), Expect = 6e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 220 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 279
Query: 303 caagacctcttccttccaagtgaccactgtcgactccgggagcaaggc 350
||||| ||| |||| ||||||||||||||| || || |||||||||||
Sbjct: 280 caagaactcgtcctaccaagtgaccactgtggattctgggagcaaggc 327
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 416 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 473
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 416 aacctgataatcactgactactgcatgcctggcatgacagggtatga 462
Score = 61.9 bits (31), Expect = 8e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 541 gtgatcatgtcctctgagaacattccttcaaggatcaataggtgcctggaggaaggagct 600
||||||||||| |||||||| | ||| |||||||||| |||||| |||| || || ||
Sbjct: 512 gtgatcatgtcttctgagaatgtgcctgcaaggatcaacaggtgcttggaagatggtgca 571
Query: 601 gacgagttcttcctaaaacctgt 623
|| ||||||||||| ||||||||
Sbjct: 572 gaggagttcttcctgaaacctgt 594
>dbj|AK101721.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061A20, full
insert sequence
Length = 1607
Score = 95.6 bits (48), Expect = 6e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 438 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 497
Query: 303 caagacctcttccttccaagtgaccactgtcgactccgggagcaaggc 350
||||| ||| |||| ||||||||||||||| || || |||||||||||
Sbjct: 498 caagaactcgtcctaccaagtgaccactgtggattctgggagcaaggc 545
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 634 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 691
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 634 aacctgataatcactgactactgcatgcctggcatgacagggtatga 680
Score = 61.9 bits (31), Expect = 8e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 541 gtgatcatgtcctctgagaacattccttcaaggatcaataggtgcctggaggaaggagct 600
||||||||||| |||||||| | ||| |||||||||| |||||| |||| || || ||
Sbjct: 730 gtgatcatgtcttctgagaatgtgcctgcaaggatcaacaggtgcttggaagatggtgca 789
Query: 601 gacgagttcttcctaaaacctgt 623
|| ||||||||||| ||||||||
Sbjct: 790 gaggagttcttcctgaaacctgt 812
>ref|NM_189771.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 699
Score = 95.6 bits (48), Expect = 6e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 27 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 86
Query: 303 caagacctcttccttccaagtgaccactgtcgactccgggagcaaggc 350
||||| ||| |||| ||||||||||||||| || || |||||||||||
Sbjct: 87 caagaactcgtcctaccaagtgaccactgtggattctgggagcaaggc 134
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 223 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 280
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 223 aacctgataatcactgactactgcatgcctggcatgacagggtatga 269
Score = 61.9 bits (31), Expect = 8e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 541 gtgatcatgtcctctgagaacattccttcaaggatcaataggtgcctggaggaaggagct 600
||||||||||| |||||||| | ||| |||||||||| |||||| |||| || || ||
Sbjct: 319 gtgatcatgtcttctgagaatgtgcctgcaaggatcaacaggtgcttggaagatggtgca 378
Query: 601 gacgagttcttcctaaaacctgt 623
|| ||||||||||| ||||||||
Sbjct: 379 gaggagttcttcctgaaacctgt 401
>gb|DU133949.1|DU133949 UCDRGT3139_5.1 UCD RGT Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RGT3139_5.1, DNA sequence
Length = 292
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 198 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 255
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 198 aacctgataatcactgactactgcatgcctggcatgacagggtatga 244
>dbj|AP004319.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone B1017B03,
*** SEQUENCING IN PROGRESS ***
Length = 145847
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 9591 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 9648
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 9591 aacctgataatcactgactactgcatgcctggcatgacagggtatga 9637
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 9145 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 9204
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 9205 caagaactcgtcctaccaag 9224
>gb|AACV01003055.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003055, whole
genome shotgun sequence
Length = 32070
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 2864 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 2921
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 2864 aacctgataatcactgactactgcatgcctggcatgacagggtatga 2910
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 2418 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 2477
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 2478 caagaactcgtcctaccaag 2497
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 42022862 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 42022919
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 42022862 aacctgataatcactgactactgcatgcctggcatgacagggtatga 42022908
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 42022416 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 42022475
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 42022476 caagaactcgtcctaccaag 42022495
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 1651156 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 1651213
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 1651156 aacctgataatcactgactactgcatgcctggcatgacagggtatga 1651202
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 1650710 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 1650769
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 1650770 caagaactcgtcctaccaag 1650789
>dbj|AP003683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0431G06
Length = 140466
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 44269 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 44326
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 44269 aacctgataatcactgactactgcatgcctggcatgacagggtatga 44315
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 43823 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 43882
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 43883 caagaactcgtcctaccaag 43902
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 16137581 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 16137638
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 16137581 aacctgataatcactgactactgcatgcctggcatgacagggtatga 16137627
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 16137135 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 16137194
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 16137195 caagaactcgtcctaccaag 16137214
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 41339302 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 41339359
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 41339302 aacctgataatcactgactactgcatgcctggcatgacagggtatga 41339348
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 41338856 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 41338915
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 41338916 caagaactcgtcctaccaag 41338935
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 83.8 bits (42), Expect = 2e-013
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 445 aacctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 41942192 aacctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 41942249
Score = 69.9 bits (35), Expect = 3e-009
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 96 aacctgatcatcacagactactgcatgcctggcatgacaggatatga 142
|||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 41942192 aacctgataatcactgactactgcatgcctggcatgacagggtatga 41942238
Score = 63.9 bits (32), Expect = 2e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 243 gttccatgtcctggcggtggacgacagcctcccggacaggaagctcatcgagaggctcct 302
|||||||||||| |||||||| || ||||| ||||||||||||||||||| ||| ||
Sbjct: 41941746 gttccatgtcctcgcggtggatgatagcctgatcgacaggaagctcatcgagatgctgct 41941805
Query: 303 caagacctcttccttccaag 322
||||| ||| |||| |||||
Sbjct: 41941806 caagaactcgtcctaccaag 41941825
>gb|D24560.1|D24560 RICR2168A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2168_1A, mRNA sequence
Length = 319
Score = 81.8 bits (41), Expect = 9e-013
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 446 acctgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaaga 502
||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 1 acctgataatcactgactactgcatgcctggcatgacagggtatgatctgctcaaga 57
Score = 67.9 bits (34), Expect = 1e-008
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 97 acctgatcatcacagactactgcatgcctggcatgacaggatatga 142
||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 1 acctgataatcactgactactgcatgcctggcatgacagggtatga 46
Score = 61.9 bits (31), Expect = 8e-007
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 541 gtgatcatgtcctctgagaacattccttcaaggatcaataggtgcctggaggaaggagct 600
||||||||||| |||||||| | ||| |||||||||| |||||| |||| || || ||
Sbjct: 96 gtgatcatgtcttctgagaatgtgcctgcaaggatcaacaggtgcttggaagatggtgca 155
Query: 601 gacgagttcttcctaaaacctgt 623
|| ||||||||||| ||||||||
Sbjct: 156 gaggagttcttcctgaaacctgt 178
>dbj|AK106426.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B09, full
insert sequence
Length = 839
Score = 77.8 bits (39), Expect = 1e-011
Identities = 123/151 (81%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||| ||||| |||||||| ||||| | ||||| || ||||| || || |||||| |||
Sbjct: 260 tgattatcactgactactggatgccggagatgaccgggtatgaactcctgaagaaggtca 319
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattcctt 568
|||||||||| || | || ||||| ||||||||||||||||| |||||| | ||
Sbjct: 320 aggagtcgtccaggctgaaggagatccctgtggtgatcatgtcctcggagaacgtctcta 379
Query: 569 caaggatcaataggtgcctggaggaaggagc 599
|||||||||| |||||| |||||||||||||
Sbjct: 380 caaggatcaacaggtgcttggaggaaggagc 410
>ref|NM_187101.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 621
Score = 67.9 bits (34), Expect = 1e-008
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| | ||||| || || |||||||||||||||||||
Sbjct: 401 tgatcatcacggactactggatgccggagatgaccgggtacgacctgctcaagaagatca 460
Query: 509 aggagtcgtc 518
|||| |||||
Sbjct: 461 aggaatcgtc 470
>gb|AACV01016034.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016034, whole
genome shotgun sequence
Length = 15851
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| | ||||| || || |||||||||||||||||||
Sbjct: 2126 tgatcatcacggactactggatgccggagatgaccgggtacgacctgctcaagaagatca 2185
Query: 509 agg 511
|||
Sbjct: 2186 agg 2188
>dbj|AP003802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1047_A06
Length = 111673
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| | ||||| || || |||||||||||||||||||
Sbjct: 94963 tgatcatcacggactactggatgccggagatgaccgggtacgacctgctcaagaagatca 95022
Query: 509 agg 511
|||
Sbjct: 95023 agg 95025
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| | ||||| || || |||||||||||||||||||
Sbjct: 3011039 tgatcatcacggactactggatgccggagatgaccgggtacgacctgctcaagaagatca 3011098
Query: 509 agg 511
|||
Sbjct: 3011099 agg 3011101
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| | ||||| || || |||||||||||||||||||
Sbjct: 1047009 tgatcatcacggactactggatgccggagatgaccgggtacgacctgctcaagaagatca 1047068
Query: 509 agg 511
|||
Sbjct: 1047069 agg 1047071
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| | ||||| || || |||||||||||||||||||
Sbjct: 14446448 tgatcatcacggactactggatgccggagatgaccgggtacgacctgctcaagaagatca 14446507
Query: 509 agg 511
|||
Sbjct: 14446508 agg 14446510
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 61.9 bits (31), Expect = 8e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| | ||||| || || |||||||||||||||||||
Sbjct: 15387964 tgatcatcacggactactggatgccggagatgaccgggtacgacctgctcaagaagatca 15388023
Query: 509 agg 511
|||
Sbjct: 15388024 agg 15388026
>dbj|AK059734.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B01, full
insert sequence
Length = 1011
Score = 50.1 bits (25), Expect = 0.003
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| |||||||| || || || || |||||| |||
Sbjct: 398 tgatcatcaccgactactggatgcccggcatgaccggctacgagctcctcaagcgcgtca 457
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
|||| ||||| |||| || |||||||||||||||||||| || ||||||
Sbjct: 458 aggaatcgtctcagctcaaggagatcccggtggtgatcatgtcgtcggagaac 510
>ref|XM_474315.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 513
Score = 50.1 bits (25), Expect = 0.003
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacaggatatgacctgctcaagaagatca 508
|||||||||| |||||||| ||||| |||||||| || || || || |||||| |||
Sbjct: 296 tgatcatcaccgactactggatgcccggcatgaccggctacgagctcctcaagcgcgtca 355
Query: 509 aggagtcgtcgtctctcagagatatcccggtggtgatcatgtcctctgagaac 561
|||| ||||| |||| || |||||||||||||||||||| || ||||||
Sbjct: 356 aggaatcgtctcagctcaaggagatcccggtggtgatcatgtcgtcggagaac 408
>gb|CF317127.1|CF317127 HD--06-L07.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--06-L07, mRNA sequence
Length = 645
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacag 484
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 481 tgataatcactgactactacatgcctggcatgacag 516
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 100 tgatcatcacagactactgcatgcctggcatgacag 135
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 481 tgataatcactgactactacatgcctggcatgacag 516
>dbj|AK109703.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F10, full
insert sequence
Length = 1968
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 449 tgatcatcacagactactgcatgcctggcatgacag 484
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 579 tgataatcactgactactacatgcctggcatgacag 614
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 100 tgatcatcacagactactgcatgcctggcatgacag 135
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 579 tgataatcactgactactacatgcctggcatgacag 614
>gb|AACV01010042.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010042, whole
genome shotgun sequence
Length = 15396
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 100 tgatcatcacagactactgcatgcctggcatgacag 135
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 6868 tgataatcactgactactacatgcctggcatgacag 6833
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacag 484
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 6868 tgataatcactgactactacatgcctggcatgacag 6833
>gb|AACV01010149.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010149, whole
genome shotgun sequence
Length = 17003
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggt 583
||||| ||||||||||||||||| |||||| | || |||||||||| ||||
Sbjct: 13030 atccctgtggtgatcatgtcctcggagaacgtctctacaaggatcaacaggt 12979
>ref|NT_079863.2| Oryza sativa (japonica cultivar-group)
Length = 2656602
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 100 tgatcatcacagactactgcatgcctggcatgacag 135
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 2300263 tgataatcactgactactacatgcctggcatgacag 2300228
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacag 484
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 2300263 tgataatcactgactactacatgcctggcatgacag 2300228
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaacattccttcaaggatcaataggt 583
||||| ||||||||||||||||| |||||| | || |||||||||| ||||
Sbjct: 4043252 atccctgtggtgatcatgtcctcggagaacgtctctacaaggatcaacaggt 4043303
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 100 tgatcatcacagactactgcatgcctggcatgacag 135
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 2591156 tgataatcactgactactacatgcctggcatgacag 2591121
Score = 48.1 bits (24), Expect = 0.012
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 449 tgatcatcacagactactgcatgcctggcatgacag 484
|||| ||||| ||||||| |||||||||||||||||
Sbjct: 2591156 tgataatcactgactactacatgcctggcatgacag 2591121
Score = 44.1 bits (22), Expect = 0.20
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 532 atcccggtggtgatcatgtcctctgagaac 561
|||||||||||||||||||| || ||||||
Sbjct: 11987350 atcccggtggtgatcatgtcgtcggagaac 11987379
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,015,163
Number of Sequences: 438736
Number of extensions: 2015163
Number of successful extensions: 10331
Number of sequences better than 0.5: 58
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9606
Number of HSP's gapped (non-prelim): 714
length of query: 1343
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1322
effective length of database: 2,791,206,460
effective search space: 3689974940120
effective search space used: 3689974940120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)