BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF303107.1|CF303107 ABF1--01-F19.g1 ABF3-overexpressing ... 321 3e-085
gb|CF309434.1|CF309434 ABF--03-K01.b1 ABF3-overexpressing t... 321 3e-085
gb|CV727297.1|CV727297 14Salt--05-G01.b1 Salt treated rice ... 321 3e-085
gb|CV728151.1|CV728151 14Salt--06-L06.b1 Salt treated rice ... 321 3e-085
dbj|AK071051.1| Oryza sativa (japonica cultivar-group) cDNA... 321 3e-085
gb|CF299589.1|CF299589 7LEAF--03-K18.g1 Rice leaf plasmid c... 313 8e-083
gb|CV728060.1|CV728060 14Salt--06-I23.b1 Salt treated rice ... 313 8e-083
gb|CF307618.1|CF307618 ABF--01-B20.g1 ABF3-overexpressing t... 307 5e-081
gb|CF316871.1|CF316871 HD--06-F15.g1 OsHDAC1-overexpressing... 307 5e-081
gb|CF308901.1|CF308901 ABF--02-O07.g1 ABF3-overexpressing t... 299 1e-078
gb|AACV01023147.1| Oryza sativa (japonica cultivar-group) c... 143 2e-031
gb|AC124151.4| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 143 2e-031
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 143 2e-031
gb|CF315910.1|CF315910 HD--05-A02.g1 OsHDAC1-overexpressing... 121 6e-025
gb|CF305811.1|CF305811 HDA1--01-M23.g1 OsHDAC1-overexpressi... 117 1e-023
dbj|AK100937.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-023
ref|XM_482857.1| Oryza sativa (japonica cultivar-group), mRNA 117 1e-023
dbj|AP005381.1| Oryza sativa (japonica cultivar-group) chro... 111 6e-022
dbj|AP004585.2| Oryza sativa (japonica cultivar-group) geno... 111 6e-022
dbj|AP006461.3| Oryza sativa (japonica cultivar-group) geno... 111 6e-022
gb|AACV01018684.1| Oryza sativa (japonica cultivar-group) c... 111 6e-022
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 111 6e-022
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 111 6e-022
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 111 6e-022
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 111 6e-022
gb|CF309435.1|CF309435 ABF--03-K01.g1 ABF3-overexpressing t... 107 9e-021
gb|CV727298.1|CV727298 14Salt--05-G01.g1 Salt treated rice ... 107 9e-021
gb|CF308900.1|CF308900 ABF--02-O07.b1 ABF3-overexpressing t... 92 5e-016
dbj|AP005559.3| Oryza sativa (japonica cultivar-group) geno... 72 5e-010
gb|AACV01020140.1| Oryza sativa (japonica cultivar-group) c... 72 5e-010
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 72 5e-010
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 72 5e-010
gb|CF315909.1|CF315909 HD--05-A02.b1 OsHDAC1-overexpressing... 52 5e-004
dbj|AK064041.1| Oryza sativa (japonica cultivar-group) cDNA... 52 5e-004
ref|XM_482856.1| Oryza sativa (japonica cultivar-group), mRNA 52 5e-004
gb|D15774.1|D15774 RICC1225A Rice callus Oryza sativa (japo... 44 0.11
dbj|AK109975.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AK119311.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AP005298.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AACV01002277.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01018299.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.11
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.11
dbj|AP002899.2| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP003343.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
>gb|CF303107.1|CF303107 ABF1--01-F19.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--01-F19, mRNA sequence
Length = 463
Score = 321 bits (162), Expect = 3e-085
Identities = 288/330 (87%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 454 gccggcgccggcgaggccttgcttcctgagctgctccctgacgaacctgttgtagatgaa 395
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 394 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 335
Query: 406 ccagatggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaagga 465
|||||| || |||||||| |||||||||||||| |||||||||| ||| |||| ||||||
Sbjct: 334 ccagatcggtatccagtagatgagggactcgagaagcatctccacgagggtgatgaagga 275
Query: 466 gtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgc 525
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 274 gtagaggatccagtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggc 215
Query: 526 ccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggag 585
| |||| ||||| |||| |||||||| ||||| || || |||||||| ||||| || |
Sbjct: 214 ctgcaccgacgcatacaaggggtacaggagcatgacggtaggccctgcaagggaatgaac 155
Query: 586 gtgagtgaggatcgtccacagcttgcccat 615
|||||||||||| ||||| |||||||||||
Sbjct: 154 gtgagtgaggattgtccagagcttgcccat 125
>gb|CF309434.1|CF309434 ABF--03-K01.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-K01, mRNA sequence
Length = 665
Score = 321 bits (162), Expect = 3e-085
Identities = 288/330 (87%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 505 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 446
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 445 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 386
Query: 406 ccagatggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaagga 465
|||||| || |||||||| |||||||||||||| |||||||||| ||| |||| ||||||
Sbjct: 385 ccagatcggtatccagtagatgagggactcgagaagcatctccacgagggtgatgaagga 326
Query: 466 gtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgc 525
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 325 gtagaggatccagtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggc 266
Query: 526 ccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggag 585
| |||| ||||| |||| |||||||| ||||| || || |||||||| ||||| || |
Sbjct: 265 ctgcaccgacgcatacaaggggtacaggagcatgacggtaggccctgcaagggaatgaac 206
Query: 586 gtgagtgaggatcgtccacagcttgcccat 615
|||||||||||| ||||| |||||||||||
Sbjct: 205 gtgagtgaggattgtccagagcttgcccat 176
Score = 109 bits (55), Expect = 2e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 187 tcagtaagcttcatgatccttcttgggcgtgacgaaggcgaggaacttgttcttgggctt 246
||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||
Sbjct: 634 tcagtaagcttcatgatccttcttgggagtgacgaaggagaggaacttgctcttggtctt 575
Query: 247 gtccttgtccttggacgacggcgacgacgac 277
||||||||||||| |||| ||||| ||||
Sbjct: 574 ctccttgtccttgggtgacgacgacggcgac 544
>gb|CV727297.1|CV727297 14Salt--05-G01.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-G01, mRNA sequence
Length = 524
Score = 321 bits (162), Expect = 3e-085
Identities = 288/330 (87%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 517 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 458
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 457 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 398
Query: 406 ccagatggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaagga 465
|||||| || |||||||| |||||||||||||| |||||||||| ||| |||| ||||||
Sbjct: 397 ccagatcggtatccagtagatgagggactcgagaagcatctccacgagggtgatgaagga 338
Query: 466 gtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgc 525
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 337 gtagaggatccagtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggc 278
Query: 526 ccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggag 585
| |||| ||||| |||| |||||||| ||||| || || |||||||| ||||| || |
Sbjct: 277 ctgcaccgacgcatacaaggggtacaggagcatgacggtaggccctgcaagggaatgaac 218
Query: 586 gtgagtgaggatcgtccacagcttgcccat 615
|||||||||||| ||||| |||||||||||
Sbjct: 217 gtgagtgaggattgtccagagcttgcccat 188
>gb|CV728151.1|CV728151 14Salt--06-L06.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-L06, mRNA sequence
Length = 527
Score = 321 bits (162), Expect = 3e-085
Identities = 288/330 (87%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 519 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 460
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 459 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 400
Query: 406 ccagatggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaagga 465
|||||| || |||||||| |||||||||||||| |||||||||| ||| |||| ||||||
Sbjct: 399 ccagatcggtatccagtagatgagggactcgagaagcatctccacgagggtgatgaagga 340
Query: 466 gtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgc 525
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 339 gtagaggatccagtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggc 280
Query: 526 ccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggag 585
| |||| ||||| |||| |||||||| ||||| || || |||||||| ||||| || |
Sbjct: 279 ctgcaccgacgcatacaaggggtacaggagcatgacggtaggccctgcaagggaatgaac 220
Query: 586 gtgagtgaggatcgtccacagcttgcccat 615
|||||||||||| ||||| |||||||||||
Sbjct: 219 gtgagtgaggattgtccagagcttgcccat 190
>dbj|AK071051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076B14, full
insert sequence
Length = 828
Score = 321 bits (162), Expect = 3e-085
Identities = 288/330 (87%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 424 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 365
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 364 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 305
Query: 406 ccagatggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaagga 465
|||||| || |||||||| |||||||||||||| |||||||||| ||| |||| ||||||
Sbjct: 304 ccagatcggtatccagtagatgagggactcgagaagcatctccacgagggtgatgaagga 245
Query: 466 gtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgc 525
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 244 gtagaggatccagtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggc 185
Query: 526 ccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggag 585
| |||| ||||| |||| |||||||| ||||| || || |||||||| ||||| || |
Sbjct: 184 ctgcaccgacgcatacaaggggtacaggagcatgacggtaggccctgcaagggaatgaac 125
Query: 586 gtgagtgaggatcgtccacagcttgcccat 615
|||||||||||| ||||| |||||||||||
Sbjct: 124 gtgagtgaggattgtccagagcttgcccat 95
Score = 109 bits (55), Expect = 2e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 187 tcagtaagcttcatgatccttcttgggcgtgacgaaggcgaggaacttgttcttgggctt 246
||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||
Sbjct: 553 tcagtaagcttcatgatccttcttgggagtgacgaaggagaggaacttgctcttggtctt 494
Query: 247 gtccttgtccttggacgacggcgacgacgac 277
||||||||||||| |||| ||||| ||||
Sbjct: 493 ctccttgtccttgggtgacgacgacggcgac 463
>gb|CF299589.1|CF299589 7LEAF--03-K18.g1 Rice leaf plasmid cDNA library II (7LEAF) Oryza
sativa (japonica cultivar-group) cDNA clone
7LEAF--03-K18, mRNA sequence
Length = 627
Score = 313 bits (158), Expect = 8e-083
Identities = 287/330 (86%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| ||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 467 gccggcgccggcaaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 408
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 407 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 348
Query: 406 ccagatggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaagga 465
|||||| || |||||||| |||||||||||||| |||||||||| ||| |||| ||||||
Sbjct: 347 ccagatcggtatccagtagatgagggactcgagaagcatctccacgagggtgatgaagga 288
Query: 466 gtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgc 525
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 287 gtagaggatccagtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggc 228
Query: 526 ccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggag 585
| |||| ||||| |||| |||||||| ||||| || || |||||||| ||||| || |
Sbjct: 227 ctgcaccgacgcatacaaggggtacaggagcatgacggtaggccctgcaagggaatgaac 168
Query: 586 gtgagtgaggatcgtccacagcttgcccat 615
|||||||||||| ||||| |||||||||||
Sbjct: 167 gtgagtgaggattgtccagagcttgcccat 138
Score = 109 bits (55), Expect = 2e-021
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 187 tcagtaagcttcatgatccttcttgggcgtgacgaaggcgaggaacttgttcttgggctt 246
||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||
Sbjct: 596 tcagtaagcttcatgatccttcttgggagtgacgaaggagaggaacttgctcttggtctt 537
Query: 247 gtccttgtccttggacgacggcgacgacgac 277
||||||||||||| |||| ||||| ||||
Sbjct: 536 ctccttgtccttgggtgacgacgacggcgac 506
>gb|CV728060.1|CV728060 14Salt--06-I23.b1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--06-I23, mRNA sequence
Length = 534
Score = 313 bits (158), Expect = 8e-083
Identities = 287/330 (86%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 523 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 464
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 463 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 404
Query: 406 ccagatggggatccagtatatgagggactcgaggagcatctccatgagcgtgacgaagga 465
|||||| || |||||| | |||||||||||||| |||||||||| ||| |||| ||||||
Sbjct: 403 ccagatcggtatccagcagatgagggactcgagaagcatctccacgagggtgatgaagga 344
Query: 466 gtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgc 525
|||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||
Sbjct: 343 gtagaggatccagtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggc 284
Query: 526 ccgcacggacgcgtacagagggtacagcagcatcaccgttggccctgctagggagtggag 585
| |||| ||||| |||| |||||||| ||||| || || |||||||| ||||| || |
Sbjct: 283 ctgcaccgacgcatacaaggggtacaggagcatgacggtaggccctgcaagggaatgaac 224
Query: 586 gtgagtgaggatcgtccacagcttgcccat 615
|||||||||||| ||||| |||||||||||
Sbjct: 223 gtgagtgaggattgtccagagcttgcccat 194
>gb|CF307618.1|CF307618 ABF--01-B20.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--01-B20, mRNA sequence
Length = 490
Score = 307 bits (155), Expect = 5e-081
Identities = 272/311 (87%)
Strand = Plus / Minus
Query: 305 tgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttg 364
||||||| ||||||||| | |||||| ||| ||||||||| ||||| ||||||||||||
Sbjct: 490 tgcttcctgagctgctccctgacgaacctgttgtagatgaacgcggctcccctgaagttg 431
Query: 365 gggagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtat 424
|| ||| | ||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 430 ggcagcgccagccacgcgatgaacagcagcttcagctcgtaccagatcggtatccagtag 371
Query: 425 atgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcg 484
|||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 370 atgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatccagtaggcc 311
Query: 485 agccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgtacaga 544
||||||||||||||||| ||||| || ||||||||||| ||| |||| ||||| ||||
Sbjct: 310 agccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgcatacaag 251
Query: 545 gggtacagcagcatcaccgttggccctgctagggagtggaggtgagtgaggatcgtccac 604
|||||||| ||||| || || |||||||| ||||| || | |||||||||||| |||||
Sbjct: 250 gggtacaggagcatgacggtaggccctgcaagggaatgaacgtgagtgaggattgtccag 191
Query: 605 agcttgcccat 615
|||||||||||
Sbjct: 190 agcttgcccat 180
>gb|CF316871.1|CF316871 HD--06-F15.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--06-F15, mRNA sequence
Length = 462
Score = 307 bits (155), Expect = 5e-081
Identities = 272/311 (87%)
Strand = Plus / Minus
Query: 305 tgcttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttg 364
||||||| ||||||||| | |||||| ||| ||||||||| ||||| ||||||||||||
Sbjct: 461 tgcttcctgagctgctccctgacgaacctgttgtagatgaacgcggctcccctgaagttg 402
Query: 365 gggagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtat 424
|| ||| | ||||||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct: 401 ggcagcgccagccacgcgatgaacagcagcttcagctcgtaccagatcggtatccagtag 342
Query: 425 atgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcg 484
|||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 341 atgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatccagtaggcc 282
Query: 485 agccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgtacaga 544
||||||||||||||||| ||||| || ||||||||||| ||| |||| ||||| ||||
Sbjct: 281 agccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgcatacaag 222
Query: 545 gggtacagcagcatcaccgttggccctgctagggagtggaggtgagtgaggatcgtccac 604
|||||||| ||||| || || |||||||| ||||| || | |||||||||||| |||||
Sbjct: 221 gggtacaggagcatgacggtaggccctgcaagggaatgaacgtgagtgaggattgtccag 162
Query: 605 agcttgcccat 615
|||||||||||
Sbjct: 161 agcttgcccat 151
>gb|CF308901.1|CF308901 ABF--02-O07.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-O07, mRNA sequence
Length = 470
Score = 299 bits (151), Expect = 1e-078
Identities = 265/303 (87%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||| ||| ||||||||| ||||| |||||||||||||| ||| |
Sbjct: 470 gagctgctccctgacgaacctgttgtagatgaacgcggctcccctgaagttgggcagcgc 411
Query: 373 gagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtatatgaggga 432
||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct: 410 cagccacgcgatgaacagcagcttcagctcgtaccagatcggtatccagtagatgaggga 351
Query: 433 ctcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactg 492
|||||| |||||||||| ||| |||| |||||||||||||||||||||||| ||||||||
Sbjct: 350 ctcgagaagcatctccacgagggtgatgaaggagtagaggatccagtaggccagccactg 291
Query: 493 ctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgtacagagggtacag 552
||||||||| ||||| || ||||||||||| ||| |||| ||||| |||| ||||||||
Sbjct: 290 ctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgcatacaaggggtacag 231
Query: 553 cagcatcaccgttggccctgctagggagtggaggtgagtgaggatcgtccacagcttgcc 612
||||| || || |||||||| ||||| || | |||||||||||| ||||| ||||||||
Sbjct: 230 gagcatgacggtaggccctgcaagggaatgaacgtgagtgaggattgtccagagcttgcc 171
Query: 613 cat 615
|||
Sbjct: 170 cat 168
>gb|AACV01023147.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023147, whole
genome shotgun sequence
Length = 13024
Score = 143 bits (72), Expect = 2e-031
Identities = 108/120 (90%)
Strand = Plus / Plus
Query: 418 ccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatcca 477
|||||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct: 5886 ccagtagatgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatcca 5945
Query: 478 gtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgc 537
|||||| ||||||||||||||||| ||||| || ||||||||||| ||| |||| |||||
Sbjct: 5946 gtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgc 6005
Score = 131 bits (66), Expect = 6e-028
Identities = 111/126 (88%)
Strand = Plus / Plus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 5651 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 5710
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 5711 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 5770
Query: 406 ccagat 411
||||||
Sbjct: 5771 ccagat 5776
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |
Sbjct: 5539 ccttcttgggagtgacgaaggagaggaacttgctcttggtcttctccttgtccttgggtg 5598
Query: 264 acggcgacgacgac 277
||| ||||| ||||
Sbjct: 5599 acgacgacggcgac 5612
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||| ||||| || | |||||||||||| ||||| |||||||||||
Sbjct: 6262 ccctgcaagggaatgaacgtgagtgaggattgtccagagcttgcccat 6309
>gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0019E05, complete sequence
Length = 129021
Score = 143 bits (72), Expect = 2e-031
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 418 ccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatcca 477
|||||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct: 4671 ccagtagatgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatcca 4612
Query: 478 gtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgc 537
|||||| ||||||||||||||||| ||||| || ||||||||||| ||| |||| |||||
Sbjct: 4611 gtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgc 4552
Score = 131 bits (66), Expect = 6e-028
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 4906 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 4847
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 4846 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 4787
Query: 406 ccagat 411
||||||
Sbjct: 4786 ccagat 4781
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |
Sbjct: 5018 ccttcttgggagtgacgaaggagaggaacttgctcttggtcttctccttgtccttgggtg 4959
Query: 264 acggcgacgacgac 277
||| ||||| ||||
Sbjct: 4958 acgacgacggcgac 4945
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||| ||||| || | |||||||||||| ||||| |||||||||||
Sbjct: 4295 ccctgcaagggaatgaacgtgagtgaggattgtccagagcttgcccat 4248
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 143 bits (72), Expect = 2e-031
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 418 ccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatcca 477
|||||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct: 6033849 ccagtagatgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatcca 6033790
Query: 478 gtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgc 537
|||||| ||||||||||||||||| ||||| || ||||||||||| ||| |||| |||||
Sbjct: 6033789 gtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgc 6033730
Score = 131 bits (66), Expect = 6e-028
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 6034084 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 6034025
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 6034024 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 6033965
Query: 406 ccagat 411
||||||
Sbjct: 6033964 ccagat 6033959
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |
Sbjct: 6034196 ccttcttgggagtgacgaaggagaggaacttgctcttggtcttctccttgtccttgggtg 6034137
Query: 264 acggcgacgacgac 277
||| ||||| ||||
Sbjct: 6034136 acgacgacggcgac 6034123
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||| ||||| || | |||||||||||| ||||| |||||||||||
Sbjct: 6033473 ccctgcaagggaatgaacgtgagtgaggattgtccagagcttgcccat 6033426
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 143 bits (72), Expect = 2e-031
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 418 ccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatcca 477
|||||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct: 13888893 ccagtagatgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatcca 13888834
Query: 478 gtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgc 537
|||||| ||||||||||||||||| ||||| || ||||||||||| ||| |||| |||||
Sbjct: 13888833 gtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgc 13888774
Score = 131 bits (66), Expect = 6e-028
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 13889128 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 13889069
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 13889068 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 13889009
Query: 406 ccagat 411
||||||
Sbjct: 13889008 ccagat 13889003
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |
Sbjct: 13889240 ccttcttgggagtgacgaaggagaggaacttgctcttggtcttctccttgtccttgggtg 13889181
Query: 264 acggcgacgacgac 277
||| ||||| ||||
Sbjct: 13889180 acgacgacggcgac 13889167
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||| ||||| || | |||||||||||| ||||| |||||||||||
Sbjct: 13888517 ccctgcaagggaatgaacgtgagtgaggattgtccagagcttgcccat 13888470
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 143 bits (72), Expect = 2e-031
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 418 ccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatcca 477
|||||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct: 17134635 ccagtagatgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatcca 17134576
Query: 478 gtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgc 537
|||||| ||||||||||||||||| ||||| || ||||||||||| ||| |||| |||||
Sbjct: 17134575 gtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgc 17134516
Score = 131 bits (66), Expect = 6e-028
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 17134870 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 17134811
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 17134810 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 17134751
Query: 406 ccagat 411
||||||
Sbjct: 17134750 ccagat 17134745
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |
Sbjct: 17134982 ccttcttgggagtgacgaaggagaggaacttgctcttggtcttctccttgtccttgggtg 17134923
Query: 264 acggcgacgacgac 277
||| ||||| ||||
Sbjct: 17134922 acgacgacggcgac 17134909
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||| ||||| || | |||||||||||| ||||| |||||||||||
Sbjct: 17134259 ccctgcaagggaatgaacgtgagtgaggattgtccagagcttgcccat 17134212
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 143 bits (72), Expect = 2e-031
Identities = 108/120 (90%)
Strand = Plus / Minus
Query: 418 ccagtatatgagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatcca 477
|||||| |||||||||||||| |||||||||| ||| |||| ||||||||||||||||||
Sbjct: 17229821 ccagtagatgagggactcgagaagcatctccacgagggtgatgaaggagtagaggatcca 17229762
Query: 478 gtaggcgagccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgc 537
|||||| ||||||||||||||||| ||||| || ||||||||||| ||| |||| |||||
Sbjct: 17229761 gtaggccagccactgctcgtcgtcaagcttcgatgggctctccatggcctgcaccgacgc 17229702
Score = 131 bits (66), Expect = 6e-028
Identities = 111/126 (88%)
Strand = Plus / Minus
Query: 286 gccggcggcggtgaggccgtgcttccggagctgctcgcgcacgaacttgtcgtagatgaa 345
||||||| ||| |||||| ||||||| ||||||||| | |||||| ||| |||||||||
Sbjct: 17230056 gccggcgccggcgaggccatgcttcctgagctgctccctgacgaacctgttgtagatgaa 17229997
Query: 346 ggcggcgcccctgaagttggggagcacgagccacgcgatgaacagcagcttgagctcgta 405
||||| |||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct: 17229996 cgcggctcccctgaagttgggcagcgccagccacgcgatgaacagcagcttcagctcgta 17229937
Query: 406 ccagat 411
||||||
Sbjct: 17229936 ccagat 17229931
Score = 75.8 bits (38), Expect = 3e-011
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 204 ccttcttgggcgtgacgaaggcgaggaacttgttcttgggcttgtccttgtccttggacg 263
|||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||| |
Sbjct: 17230168 ccttcttgggagtgacgaaggagaggaacttgctcttggtcttctccttgtccttgggtg 17230109
Query: 264 acggcgacgacgac 277
||| ||||| ||||
Sbjct: 17230108 acgacgacggcgac 17230095
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 568 ccctgctagggagtggaggtgagtgaggatcgtccacagcttgcccat 615
|||||| ||||| || | |||||||||||| ||||| |||||||||||
Sbjct: 17229445 ccctgcaagggaatgaacgtgagtgaggattgtccagagcttgcccat 17229398
>gb|CF315910.1|CF315910 HD--05-A02.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--05-A02, mRNA sequence
Length = 588
Score = 121 bits (61), Expect = 6e-025
Identities = 193/237 (81%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 445 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 386
Query: 367 gagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtatat 426
|||||| |||||||| | |||||||| ||| | | ||||| | || |||||||| |
Sbjct: 385 gagcaccagccacgccacgaacagcaccttcaccggataccacaccggaatccagtagag 326
Query: 427 gagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgag 486
|| | |||| || |||||||| ||| |||| |||||||||||||||||||||||| ||
Sbjct: 325 gacaggctcggcgaccatctccaggagggtgatgaaggagtagaggatccagtaggccag 266
Query: 487 ccactgctcgtcgtccagcttggacgggctctccatcgcccgcacggacgcgtacag 543
||||||||||||||| | ||||| ||||||||||||||| | | ||||||||||||
Sbjct: 265 ccactgctcgtcgtcaaccttggtcgggctctccatcgcgcagatggacgcgtacag 209
>gb|CF305811.1|CF305811 HDA1--01-M23.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--01-M23, mRNA sequence
Length = 533
Score = 117 bits (59), Expect = 1e-023
Identities = 179/219 (81%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 401 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 342
Query: 367 gagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtatat 426
|||||| |||||||| | |||||||| ||| | | ||||| | || |||||||| |
Sbjct: 341 gagcaccagccacgccacgaacagcaccttcaccggataccacaccggaatccagtagag 282
Query: 427 gagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgag 486
|| | |||| || |||||||| ||| |||| |||||||||||||||||||||||| ||
Sbjct: 281 gacaggctcggcgaccatctccaggagggtgatgaaggagtagaggatccagtaggccag 222
Query: 487 ccactgctcgtcgtccagcttggacgggctctccatcgc 525
||||||||||||||| | ||||| |||||||||||||||
Sbjct: 221 ccactgctcgtcgtcaaccttggtcgggctctccatcgc 183
>dbj|AK100937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136N21, full
insert sequence
Length = 845
Score = 117 bits (59), Expect = 1e-023
Identities = 179/219 (81%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 505 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 446
Query: 367 gagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtatat 426
|||||| |||||||| | |||||||| ||| | | ||||| | || |||||||| |
Sbjct: 445 gagcaccagccacgccacgaacagcaccttcaccggataccacaccggaatccagtagag 386
Query: 427 gagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgag 486
|| | |||| || |||||||| ||| |||| |||||||||||||||||||||||| ||
Sbjct: 385 gacaggctcggcgaccatctccaggagggtgatgaaggagtagaggatccagtaggccag 326
Query: 487 ccactgctcgtcgtccagcttggacgggctctccatcgc 525
||||||||||||||| | ||||| |||||||||||||||
Sbjct: 325 ccactgctcgtcgtcaaccttggtcgggctctccatcgc 287
>ref|XM_482857.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 844
Score = 117 bits (59), Expect = 1e-023
Identities = 179/219 (81%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 504 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 445
Query: 367 gagcacgagccacgcgatgaacagcagcttgagctcgtaccagatggggatccagtatat 426
|||||| |||||||| | |||||||| ||| | | ||||| | || |||||||| |
Sbjct: 444 gagcaccagccacgccacgaacagcaccttcaccggataccacaccggaatccagtagag 385
Query: 427 gagggactcgaggagcatctccatgagcgtgacgaaggagtagaggatccagtaggcgag 486
|| | |||| || |||||||| ||| |||| |||||||||||||||||||||||| ||
Sbjct: 384 gacaggctcggcgaccatctccaggagggtgatgaaggagtagaggatccagtaggccag 325
Query: 487 ccactgctcgtcgtccagcttggacgggctctccatcgc 525
||||||||||||||| | ||||| |||||||||||||||
Sbjct: 324 ccactgctcgtcgtcaaccttggtcgggctctccatcgc 286
>dbj|AP005381.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone B1069E01, ***
SEQUENCING IN PROGRESS ***
Length = 149879
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 69671 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 69612
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 69611 aaccttggtcgggctctccatcgc 69588
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 69902 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 69843
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 69842 gagcaccagccacgccacgaacagca 69817
>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0470B03
Length = 163371
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 49588 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 49529
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 49528 aaccttggtcgggctctccatcgc 49505
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 49819 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 49760
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 49759 gagcaccagccacgccacgaacagca 49734
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0104B02
Length = 169588
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 163698 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 163639
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 163638 aaccttggtcgggctctccatcgc 163615
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 163929 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 163870
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 163869 gagcaccagccacgccacgaacagca 163844
>gb|AACV01018684.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018684, whole
genome shotgun sequence
Length = 30724
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 13726 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 13785
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 13786 aaccttggtcgggctctccatcgc 13809
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 13495 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 13554
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 13555 gagcaccagccacgccacgaacagca 13580
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22751773 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 22751714
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 22751713 aaccttggtcgggctctccatcgc 22751690
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 22752004 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 22751945
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 22751944 gagcaccagccacgccacgaacagca 22751919
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgacttg 280
||||||||||||||||||||||
Sbjct: 17049393 ggacgacggcgacgacgacttg 17049414
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 14230168 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 14230109
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 14230108 aaccttggtcgggctctccatcgc 14230085
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 14230399 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 14230340
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 14230339 gagcaccagccacgccacgaacagca 14230314
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgacttg 280
||||||||||||||||||||||
Sbjct: 8509213 ggacgacggcgacgacgacttg 8509234
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 21832174 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 21832115
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 21832114 aaccttggtcgggctctccatcgc 21832091
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 21832405 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 21832346
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 21832345 gagcaccagccacgccacgaacagca 21832320
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgacttg 280
||||||||||||||||||||||
Sbjct: 16111219 ggacgacggcgacgacgacttg 16111240
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 111 bits (56), Expect = 6e-022
Identities = 77/84 (91%)
Strand = Plus / Minus
Query: 442 catctccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtc 501
|||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 22989860 catctccaggagggtgatgaaggagtagaggatccagtaggccagccactgctcgtcgtc 22989801
Query: 502 cagcttggacgggctctccatcgc 525
| ||||| |||||||||||||||
Sbjct: 22989800 aaccttggtcgggctctccatcgc 22989777
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 22990091 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 22990032
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 22990031 gagcaccagccacgccacgaacagca 22990006
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgacttg 280
||||||||||||||||||||||
Sbjct: 17287480 ggacgacggcgacgacgacttg 17287501
>gb|CF309435.1|CF309435 ABF--03-K01.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-K01, mRNA sequence
Length = 494
Score = 107 bits (54), Expect = 9e-021
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 187 tcagtaagcttcatgatccttcttgggcgtgacgaaggcgaggaacttgttcttgggctt 246
||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||
Sbjct: 326 tcagtaagcttcatgatccttcttgggagtgacgaaggagaggaacttgctcttggtctt 385
Query: 247 gtccttgtccttgg 260
|||||||||||||
Sbjct: 386 ctccttgtccttgg 399
>gb|CV727298.1|CV727298 14Salt--05-G01.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--05-G01, mRNA sequence
Length = 493
Score = 107 bits (54), Expect = 9e-021
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 187 tcagtaagcttcatgatccttcttgggcgtgacgaaggcgaggaacttgttcttgggctt 246
||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||
Sbjct: 293 tcagtaagcttcatgatccttcttgggagtgacgaaggagaggaacttgctcttggtctt 352
Query: 247 gtccttgtccttgg 260
|||||||||||||
Sbjct: 353 ctccttgtccttgg 366
>gb|CF308900.1|CF308900 ABF--02-O07.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--02-O07, mRNA sequence
Length = 418
Score = 91.7 bits (46), Expect = 5e-016
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 187 tcagtaagcttcatgatccttcttgggcgtgacgaaggcgaggaacttgttcttgggctt 246
||||||||||||||||||||||||||| ||||| |||| ||||||||| |||||| |||
Sbjct: 312 tcagtaagcttcatgatccttcttgggagtgacaaaggaaaggaacttgctcttggtctt 371
Query: 247 gtccttgtccttgg 260
|||||||||||||
Sbjct: 372 ctccttgtccttgg 385
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OJ1163_C07
Length = 107121
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 446 tccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagc 505
|||||||| |||| || |||||| || |||||||| | ||||| ||||||||||||| |
Sbjct: 18657 tccatgagggtgatgagggagtacagtatccagtacaccagccattgctcgtcgtccacc 18598
Query: 506 ttggacgggctctccatcgc 525
||||||| ||||||||||||
Sbjct: 18597 ttggacgtgctctccatcgc 18578
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||||||||||||||||| | || |||||||| | || |||||
Sbjct: 18878 gagctgctccctgacgaacttgtcgtagatgaacgacgcccccctgaactgaggcagcac 18819
Query: 373 gagccacgcgatgaacag 390
|||||||| | ||||||
Sbjct: 18818 cagccacgccacgaacag 18801
>gb|AACV01020140.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020140, whole
genome shotgun sequence
Length = 14039
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 446 tccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagc 505
|||||||| |||| || |||||| || |||||||| | ||||| ||||||||||||| |
Sbjct: 4221 tccatgagggtgatgagggagtacagtatccagtacaccagccattgctcgtcgtccacc 4280
Query: 506 ttggacgggctctccatcgc 525
||||||| ||||||||||||
Sbjct: 4281 ttggacgtgctctccatcgc 4300
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||||||||||||||||| | || |||||||| | || |||||
Sbjct: 4000 gagctgctccctgacgaacttgtcgtagatgaacgacgcccccctgaactgaggcagcac 4059
Query: 373 gagccacgcgatgaacag 390
|||||||| | ||||||
Sbjct: 4060 cagccacgccacgaacag 4077
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 446 tccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagc 505
|||||||| |||| || |||||| || |||||||| | ||||| ||||||||||||| |
Sbjct: 2512769 tccatgagggtgatgagggagtacagtatccagtacaccagccattgctcgtcgtccacc 2512710
Query: 506 ttggacgggctctccatcgc 525
||||||| ||||||||||||
Sbjct: 2512709 ttggacgtgctctccatcgc 2512690
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||||||||||||||||| | || |||||||| | || |||||
Sbjct: 2512990 gagctgctccctgacgaacttgtcgtagatgaacgacgcccccctgaactgaggcagcac 2512931
Query: 373 gagccacgcgatgaacag 390
|||||||| | ||||||
Sbjct: 2512930 cagccacgccacgaacag 2512913
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 446 tccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagc 505
|||||||| |||| || |||||| || |||||||| | ||||| ||||||||||||| |
Sbjct: 6173516 tccatgagggtgatgagggagtacagtatccagtacaccagccattgctcgtcgtccacc 6173457
Query: 506 ttggacgggctctccatcgc 525
||||||| ||||||||||||
Sbjct: 6173456 ttggacgtgctctccatcgc 6173437
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||||||||||||||||| | || |||||||| | || |||||
Sbjct: 6173737 gagctgctccctgacgaacttgtcgtagatgaacgacgcccccctgaactgaggcagcac 6173678
Query: 373 gagccacgcgatgaacag 390
|||||||| | ||||||
Sbjct: 6173677 cagccacgccacgaacag 6173660
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 446 tccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagc 505
|||||||| |||| || |||||| || |||||||| | ||||| ||||||||||||| |
Sbjct: 15647327 tccatgagggtgatgagggagtacagtatccagtacaccagccattgctcgtcgtccacc 15647268
Query: 506 ttggacgggctctccatcgc 525
||||||| ||||||||||||
Sbjct: 15647267 ttggacgtgctctccatcgc 15647248
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||||||||||||||||| | || |||||||| | || |||||
Sbjct: 15647548 gagctgctccctgacgaacttgtcgtagatgaacgacgcccccctgaactgaggcagcac 15647489
Query: 373 gagccacgcgatgaacag 390
|||||||| | ||||||
Sbjct: 15647488 cagccacgccacgaacag 15647471
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 71.9 bits (36), Expect = 5e-010
Identities = 69/80 (86%)
Strand = Plus / Minus
Query: 446 tccatgagcgtgacgaaggagtagaggatccagtaggcgagccactgctcgtcgtccagc 505
|||||||| |||| || |||||| || |||||||| | ||||| ||||||||||||| |
Sbjct: 16820966 tccatgagggtgatgagggagtacagtatccagtacaccagccattgctcgtcgtccacc 16820907
Query: 506 ttggacgggctctccatcgc 525
||||||| ||||||||||||
Sbjct: 16820906 ttggacgtgctctccatcgc 16820887
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||||||||||||||||| | || |||||||| | || |||||
Sbjct: 16821187 gagctgctccctgacgaacttgtcgtagatgaacgacgcccccctgaactgaggcagcac 16821128
Query: 373 gagccacgcgatgaacag 390
|||||||| | ||||||
Sbjct: 16821127 cagccacgccacgaacag 16821110
>gb|CF315909.1|CF315909 HD--05-A02.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--05-A02, mRNA sequence
Length = 524
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 368 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 427
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 428 gagcaccagccacgccacgaacagca 453
>dbj|AK064041.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D01, full
insert sequence
Length = 652
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 312 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 253
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 252 gagcaccagccacgccacgaacagca 227
>ref|XM_482856.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 653
Score = 52.0 bits (26), Expect = 5e-004
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 307 cttccggagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggg 366
||||| ||||||||| | |||| ||| | ||||||||||| ||||||| |||| | ||
Sbjct: 313 cttcctgagctgctccctgacgagcttcttgtagatgaaggaggcgcccttgaactgcgg 254
Query: 367 gagcacgagccacgcgatgaacagca 392
|||||| |||||||| | ||||||||
Sbjct: 253 gagcaccagccacgccacgaacagca 228
>gb|D15774.1|D15774 RICC1225A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1225A, mRNA sequence
Length = 330
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 313 gagctgctcgcgcacgaacttgtcgtagatgaaggcggcgcccctgaagttggggagcac 372
||||||||| | |||||||||||||||||||| | || |||||||| | || |||||
Sbjct: 106 gagctgctccctgacgaacttgtcgtagatgaacgacgcccccctgaactgaggcagcac 47
Query: 373 gagccacgcgatgaacag 390
|||||||| | ||||||
Sbjct: 46 cagccacgccacgaacag 29
>dbj|AK109975.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-C11, full
insert sequence
Length = 3576
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 238 cttgggcttgtccttgtccttg 259
||||||||||||||||||||||
Sbjct: 2007 cttgggcttgtccttgtccttg 1986
>dbj|AK119311.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-G08, full
insert sequence
Length = 3224
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgacttg 280
||||||||||||||||||||||
Sbjct: 2707 ggacgacggcgacgacgacttg 2728
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1770_H03
Length = 189893
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgacttg 280
||||||||||||||||||||||
Sbjct: 148105 ggacgacggcgacgacgacttg 148126
>gb|AACV01002277.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002277, whole
genome shotgun sequence
Length = 11086
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Minus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
||||||||||| |||||||| |||||| |||| || ||||| | || |||||||| ||
Sbjct: 6705 ggagtagaggacccagtaggtgagccattgctgatcatccagggtagaagggctctctat 6646
Query: 523 cgcccgcacggacgcgta 540
||| |||| ||||||||
Sbjct: 6645 cgcacgcatcgacgcgta 6628
>gb|AACV01018299.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018299,
whole genome shotgun sequence
Length = 23629
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 259 ggacgacggcgacgacgacttg 280
||||||||||||||||||||||
Sbjct: 160 ggacgacggcgacgacgacttg 181
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
||||||||||| |||||||| |||||| |||| || ||||| | || |||||||| ||
Sbjct: 30438753 ggagtagaggacccagtaggtgagccattgctgatcatccagggtagaagggctctctat 30438812
Query: 523 cgcccgcacggacgcgta 540
||| |||| ||||||||
Sbjct: 30438813 cgcacgcatcgacgcgta 30438830
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
||||||||||| |||||||| |||||| |||| || ||||| | || |||||||| ||
Sbjct: 4886136 ggagtagaggacccagtaggtgagccattgctgatcatccagggtagaagggctctctat 4886195
Query: 523 cgcccgcacggacgcgta 540
||| |||| ||||||||
Sbjct: 4886196 cgcacgcatcgacgcgta 4886213
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0456A01
Length = 143710
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
||||||||||| |||||||| |||||| |||| || ||||| | || |||||||| ||
Sbjct: 43810 ggagtagaggacccagtaggtgagccattgctgatcatccagggtagaagggctctctat 43869
Query: 523 cgcccgcacggacgcgta 540
||| |||| ||||||||
Sbjct: 43870 cgcacgcatcgacgcgta 43887
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0042A10
Length = 146840
Score = 44.1 bits (22), Expect = 0.11
Identities = 64/78 (82%)
Strand = Plus / Plus
Query: 463 ggagtagaggatccagtaggcgagccactgctcgtcgtccagcttggacgggctctccat 522
||||||||||| |||||||| |||||| |||| || ||||| | || |||||||| ||
Sbjct: 146402 ggagtagaggacccagtaggtgagccattgctgatcatccagggtagaagggctctctat 146461
Query: 523 cgcccgcacggacgcgta 540
||| |||| ||||||||
Sbjct: 146462 cgcacgcatcgacgcgta 146479
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,276,374
Number of Sequences: 438736
Number of extensions: 1276374
Number of successful extensions: 14897
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14253
Number of HSP's gapped (non-prelim): 644
length of query: 796
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 775
effective length of database: 2,791,206,460
effective search space: 2163185006500
effective search space used: 2163185006500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)