BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.2
(1190 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK065744.1| Oryza sativa (japonica cultivar-group) cDNA... 761 0.0
gb|CB653598.1|CB653598 OSJNEc04M15.f OSJNEc Oryza sativa (j... 620 e-175
gb|CB653599.1|CB653599 OSJNEc04M15.r OSJNEc Oryza sativa (j... 452 e-124
gb|AU182287.1|AU182287 AU182287 Rice panicle at flowering s... 436 e-119
gb|AU069930.1|AU069930 AU069930 Rice panicle (longer than 1... 418 e-114
gb|AY644636.1| Oryza sativa (japonica cultivar-group) caffe... 416 e-113
gb|AACV01013091.1| Oryza sativa (japonica cultivar-group) c... 416 e-113
dbj|AB023482.2| Oryza sativa (japonica cultivar-group) geno... 416 e-113
dbj|AP002536.2| Oryza sativa (japonica cultivar-group) geno... 416 e-113
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 416 e-113
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 416 e-113
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 416 e-113
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 416 e-113
gb|CV728538.1|CV728538 COLD--01-N06.b1 Cold treated rice le... 406 e-110
gb|CF293401.1|CF293401 30DGS--02-J06.b1 Rice leaf plasmid c... 398 e-108
gb|CV721193.1|CV721193 YBH--03-D16.b1 Rice before heading y... 398 e-108
gb|CF293402.1|CF293402 30DGS--02-J06.g1 Rice leaf plasmid c... 367 9e-099
gb|CA756287.1|CA756287 BR030039000_PLATE_D05_36_044.ab1 OA ... 347 9e-093
gb|AU198028.1|AU198028 AU198028 Rice green shoot Oryza sati... 343 1e-091
gb|AU182288.1|AU182288 AU182288 Rice panicle at flowering s... 295 3e-077
gb|AU058070.1|AU058070 AU058070 Rice panicle (longer than 1... 264 1e-067
gb|AU058067.2|AU058067 AU058067 Rice panicle (longer than 1... 153 3e-034
gb|AU101378.1|AU101378 AU101378 Rice panicle (longer than 1... 129 4e-027
dbj|AK061757.1| Oryza sativa (japonica cultivar-group) cDNA... 129 4e-027
dbj|AK065515.1| Oryza sativa (japonica cultivar-group) cDNA... 129 4e-027
ref|XM_483169.1| Oryza sativa (japonica cultivar-group), mRNA 129 4e-027
ref|XM_483170.1| Oryza sativa (japonica cultivar-group), mRNA 129 4e-027
ref|XM_507282.1| PREDICTED Oryza sativa (japonica cultivar-... 129 4e-027
dbj|AK108479.1| Oryza sativa (japonica cultivar-group) cDNA... 127 1e-026
gb|AACV01020268.1| Oryza sativa (japonica cultivar-group) c... 127 1e-026
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 127 1e-026
dbj|AP005392.3| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
dbj|AP005633.3| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
dbj|AP000364.1| Oryza sativa (japonica cultivar-group) geno... 105 5e-020
gb|AACV01018795.1| Oryza sativa (japonica cultivar-group) c... 105 5e-020
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 105 5e-020
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 105 5e-020
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 105 5e-020
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 105 5e-020
gb|AU070794.1|AU070794 AU070794 Rice cDNA from young root O... 103 2e-019
dbj|AK106735.1| Oryza sativa (japonica cultivar-group) cDNA... 96 5e-017
gb|AY644638.1| Oryza sativa (japonica cultivar-group) caffe... 96 5e-017
gb|AU101479.1|AU101479 AU101479 Rice immature leaf includin... 82 8e-013
gb|AU164542.1|AU164542 AU164542 Rice root Oryza sativa (jap... 82 8e-013
gb|CA755835.1|CA755835 BR030029000_PLATE_D01_4_012.ab1 OA O... 82 8e-013
gb|CB650397.1|CB650397 OSJNEb14N03.f OSJNEb Oryza sativa (j... 82 8e-013
gb|CB650869.1|CB650869 OSJNEb15J05.f OSJNEb Oryza sativa (j... 82 8e-013
gb|CB651300.1|CB651300 OSJNEb16D09.f OSJNEb Oryza sativa (j... 82 8e-013
gb|CB651301.1|CB651301 OSJNEb16D09.r OSJNEb Oryza sativa (j... 82 8e-013
gb|CB680447.1|CB680447 OSJNEf05C19.r OSJNEf Oryza sativa (j... 82 8e-013
gb|CF589246.1|CF589246 EST00H03 Subtracted cDNA library of ... 82 8e-013
gb|CO435814.1|CO435814 OsMR880 5MT resistant rice mutant cD... 82 8e-013
gb|CV721863.1|CV721863 YBH--05-J11.b1 Rice before heading y... 82 8e-013
gb|BP184560.1|BP184560 BP184560 pNS rice panicle cDNA, flow... 82 8e-013
dbj|AK071482.1| Oryza sativa (japonica cultivar-group) cDNA... 82 8e-013
dbj|AK104326.1| Oryza sativa (japonica cultivar-group) cDNA... 82 8e-013
dbj|AK104801.1| Oryza sativa (japonica cultivar-group) cDNA... 82 8e-013
gb|AY644637.1| Oryza sativa (japonica cultivar-group) caffe... 82 8e-013
ref|XM_483167.1| Oryza sativa (japonica cultivar-group), mRNA 82 8e-013
ref|XM_507281.2| PREDICTED Oryza sativa (japonica cultivar-... 82 8e-013
ref|XM_507591.1| PREDICTED Oryza sativa (japonica cultivar-... 82 8e-013
dbj|AB110168.1| Oryza sativa (japonica cultivar-group) mRNA... 82 8e-013
gb|D48033.1|D48033 RICS13955A Rice green shoot Oryza sativa... 78 1e-011
gb|AU164541.1|AU164541 AU164541 Rice root Oryza sativa (jap... 74 2e-010
gb|AU184482.1|AU184482 AU184482 Rice root Oryza sativa (jap... 74 2e-010
gb|CV721179.1|CV721179 YBH--03-D01.b1 Rice before heading y... 74 2e-010
gb|BP184507.1|BP184507 BP184507 pNS rice panicle cDNA, germ... 74 2e-010
gb|AU197917.1|AU197917 AU197917 Rice green shoot Oryza sati... 72 8e-010
gb|AU197920.1|AU197920 AU197920 Rice green shoot Oryza sati... 72 8e-010
gb|BP184421.1|BP184421 BP184421 pNS rice panicle cDNA, germ... 68 1e-008
gb|AU095745.1|AU095745 AU095745 Rice green shoot Oryza sati... 66 5e-008
gb|AU095774.1|AU095774 AU095774 Rice green shoot Oryza sati... 66 5e-008
gb|AU096741.1|AU096741 AU096741 Rice green shoot Oryza sati... 66 5e-008
gb|AU162815.1|AU162815 AU162815 Rice green shoot Oryza sati... 66 5e-008
gb|AU162915.1|AU162915 AU162915 Rice green shoot Oryza sati... 66 5e-008
gb|CF308395.1|CF308395 ABF--02-D07.g1 ABF3-overexpressing t... 64 2e-007
gb|AU095746.1|AU095746 AU095746 Rice green shoot Oryza sati... 62 7e-007
gb|CF312394.1|CF312394 ABF--08-C02.b1 ABF3-overexpressing t... 60 3e-006
gb|CF324904.1|CF324904 JMT1--01-M15.g1 AtJMT-overexpressing... 60 3e-006
gb|AU030740.1|AU030740 AU030740 Rice cDNA from immature lea... 58 1e-005
gb|AU197418.1|AU197418 AU197418 Rice cDNA from young root O... 54 2e-004
gb|D48407.1|D48407 RICS14584A Rice green shoot Oryza sativa... 50 0.003
gb|AU096666.1|AU096666 AU096666 Rice green shoot Oryza sati... 50 0.003
gb|D40454.1|D40454 RICS2451A Rice shoot Oryza sativa (japon... 48 0.011
gb|D46175.1|D46175 RICS10679A Rice green shoot Oryza sativa... 48 0.011
gb|D46192.1|D46192 RICS10710A Rice green shoot Oryza sativa... 48 0.011
gb|D47338.1|D47338 RICS12651A Rice green shoot Oryza sativa... 48 0.011
gb|D47555.1|D47555 RICS13127A Rice green shoot Oryza sativa... 48 0.011
gb|D47580.1|D47580 RICS13162A Rice green shoot Oryza sativa... 48 0.011
gb|D47599.1|D47599 RICS13186A Rice green shoot Oryza sativa... 48 0.011
gb|D48051.1|D48051 RICS13979A Rice green shoot Oryza sativa... 48 0.011
gb|D48139.1|D48139 RICS14205A Rice green shoot Oryza sativa... 48 0.011
gb|D48158.1|D48158 RICS14232A Rice green shoot Oryza sativa... 48 0.011
gb|D48309.1|D48309 RICS14446A Rice green shoot Oryza sativa... 48 0.011
gb|D48458.1|D48458 RICS14661A Rice green shoot Oryza sativa... 48 0.011
gb|D48529.1|D48529 RICS14770A Rice green shoot Oryza sativa... 48 0.011
gb|D48645.1|D48645 RICS14978A Rice green shoot Oryza sativa... 48 0.011
gb|D48758.1|D48758 RICS15150A Rice green shoot Oryza sativa... 48 0.011
gb|D15839.1|D15839 RICC1381A Rice callus Oryza sativa (japo... 48 0.011
gb|AU030254.1|AU030254 AU030254 Rice cDNA from immature lea... 48 0.011
gb|AU030739.1|AU030739 AU030739 Rice cDNA from immature lea... 48 0.011
gb|AU057625.1|AU057625 AU057625 Oryza sativa mature leaf Ni... 48 0.011
gb|AU057943.1|AU057943 AU057943 Oryza sativa mature leaf Ni... 48 0.011
gb|AU096740.1|AU096740 AU096740 Rice green shoot Oryza sati... 48 0.011
gb|AU065696.2|AU065696 AU065696 Rice cDNA from immature lea... 48 0.011
gb|CF309649.1|CF309649 ABF--03-O16.b1 ABF3-overexpressing t... 48 0.011
gb|BP184357.1|BP184357 BP184357 pNS rice panicle cDNA, germ... 48 0.011
gb|BP184412.1|BP184412 BP184412 pNS rice panicle cDNA, germ... 48 0.011
gb|BP184433.1|BP184433 BP184433 pNS rice panicle cDNA, flow... 48 0.011
gb|BP184622.1|BP184622 BP184622 pNS rice panicle cDNA, flow... 48 0.011
gb|BP184761.1|BP184761 BP184761 pNS rice panicle cDNA, germ... 48 0.011
gb|D47341.1|D47341 RICS12656A Rice green shoot Oryza sativa... 46 0.044
gb|C19432.1|C19432 C19432 Rice panicle at ripening stage Or... 46 0.044
gb|D24716.1|D24716 RICR2427A Rice root Oryza sativa (japoni... 46 0.044
gb|CF308394.1|CF308394 ABF--02-D07.b1 ABF3-overexpressing t... 46 0.044
gb|CX728127.1|CX728127 OSJNEe01K02.r OSJNEe Oryza sativa (j... 46 0.044
gb|D39618.1|D39618 RICS1137A Rice shoot Oryza sativa (japon... 44 0.17
gb|D46171.1|D46171 RICS10673A Rice green shoot Oryza sativa... 44 0.17
gb|AU057626.1|AU057626 AU057626 Oryza sativa mature leaf Ni... 44 0.17
gb|AU057944.1|AU057944 AU057944 Oryza sativa mature leaf Ni... 44 0.17
gb|AU096701.1|AU096701 AU096701 Rice green shoot Oryza sati... 44 0.17
gb|AU197908.1|AU197908 AU197908 Rice green shoot Oryza sati... 44 0.17
gb|AU197965.1|AU197965 AU197965 Rice green shoot Oryza sati... 44 0.17
>dbj|AK065744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039L12, full
insert sequence
Length = 1052
Score = 761 bits (384), Expect = 0.0
Identities = 633/716 (88%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 137 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 196
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 197 taccagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctc 256
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||| |||||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct: 257 cgcgaggtcaccgccaaccacccatggaacctgatgacgacgtcggcggacgaggggcaa 316
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcctgaacctgctgctgaagctcatcggcgccaagaagaccatggagatcggcgtctac 376
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||| ||||| |||| || |||||||||||||||||
Sbjct: 377 accggctactccctcctcgccaccgccctcgccatccccgacgacggcacgatcttggcg 436
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
|||||||||||||| |||||||||||||| || || || | ||| | ||||| || |||
Sbjct: 437 atggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaaggcgggagtg 496
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
| ||||||||||||||||| ||||| |||||||| || || |||||| | || |||| |
Sbjct: 497 gcgcacaagatcgacttccgggagggacccgcgctgccggtgctggaccagctggtggag 556
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
|| ||| | || |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 557 gaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaaggacaactac 616
Query: 654 ctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgac 713
|||| ||||||||||||||| |||||||||| | | |||||||||| |||||||||||
Sbjct: 617 ctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgtcggctacgac 676
Query: 714 aacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatc 773
|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 677 aacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcgcaagtacatc 736
Query: 774 cgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtc 833
|||| ||||||||||||||| |||| ||||||| || |||||||||||| ||||||||
Sbjct: 737 cgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccgaccaccgcgtc 796
Query: 834 gagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 797 gagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgtcaagtg 852
>gb|CB653598.1|CB653598 OSJNEc04M15.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04M15 5', mRNA sequence
Length = 723
Score = 620 bits (313), Expect = e-175
Identities = 535/609 (87%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 115 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 174
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 175 taccagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctc 234
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||| |||||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct: 235 cgcgaggtcaccgccaaccacccatggaacctgatgacgacgtcggcggacgaggggcaa 294
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttcctgaacctgctgctgaagctcatcggcgccaagaagaccatggagatcggcgtctac 354
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||| ||||| |||| || |||||||||||||||||
Sbjct: 355 accggctactccctcctcgccaccgccctcgccatccccgacgacggcacgatcttggcg 414
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
|||||||||||||| |||||||||||||| || || || | ||| | ||||| || |||
Sbjct: 415 atggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaaggcgggagtg 474
Query: 534 ggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcg 593
| ||||||||||||||||| ||||| |||||||| || || |||||| | || |||| |
Sbjct: 475 gcgcacaagatcgacttccgggagggacccgcgctgccggtgctggaccagctggtggag 534
Query: 594 gacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactac 653
|| ||| | || |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 535 gaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaaggacaactac 594
Query: 654 ctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacgac 713
|||| ||||||||||||||| |||||||||| | | |||||||||| |||||||||||
Sbjct: 595 ctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgtcggctacgac 654
Query: 714 aacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatc 773
|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 655 aacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcgcaagtacatc 714
Query: 774 cgcttctac 782
|||| ||||
Sbjct: 715 cgctactac 723
>gb|CB653599.1|CB653599 OSJNEc04M15.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04M15 3', mRNA sequence
Length = 692
Score = 452 bits (228), Expect = e-124
Identities = 405/464 (87%)
Strand = Plus / Minus
Query: 426 ctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatggacatcaac 485
|||||||||||||| ||||| |||| || ||||||||||||||||| ||||||||||||
Sbjct: 690 ctcctcgccaccgccctcgccatccccgacgacggcacgatcttggcgatggacatcaac 631
Query: 486 cgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtgggccacaagatc 545
|| |||||||||||||| || || || | ||| | ||||| || |||| |||||||||
Sbjct: 630 cgggagaactacgagctggggctcccgtcgatcgagaaggcgggagtggcgcacaagatc 571
Query: 546 gacttccgcgagggccccgcgctccccgtcctggacgacctcgtggcggacaaggagcag 605
|||||||| ||||| |||||||| || || |||||| | || |||| ||| ||| |
Sbjct: 570 gacttccgggagggacccgcgctgccggtgctggaccagctggtggaggaggagggcaac 511
Query: 606 cacgggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccac 665
|| |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||
Sbjct: 510 catgggtcgttcgacttcgtgttcgtcgacgccgacaaggacaactacctcaactaccac 451
Query: 666 gagcggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
|||||||| |||||||||| | | |||||||||| ||||||||||||||||||| |||
Sbjct: 450 gagcggctgatgaagctggtcaaggtcggcggcctcgtcggctacgacaacacgctctgg 391
Query: 726 aacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgc 785
|||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||
Sbjct: 390 aacggctccgtcgtgctccccgccgacgcccccatgcgcaagtacatccgctactaccgc 331
Query: 786 gacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccag 845
|||||||| |||| ||||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 330 gacttcgtgctcgagctcaacaaggccctcgccgccgaccaccgcgtcgagatctgccag 271
Query: 846 ctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 270 ctccccgtcggcgacggcatcaccctctgccgccgcgtcaagtg 227
>gb|AU182287.1|AU182287 AU182287 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1596, mRNA sequence
Length = 448
Score = 436 bits (220), Expect = e-119
Identities = 391/448 (87%)
Strand = Plus / Plus
Query: 375 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgcc 434
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 ctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgcc 60
Query: 435 accgcgctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaac 494
||||| ||||| |||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct: 61 accgccctcgccatccccgacgacggcacgatcttggcgatggacatcaaccgggagaac 120
Query: 495 tacgagctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgc 554
|||||||| || || || | ||| | ||||| || |||| |||||||||||||||||
Sbjct: 121 tacgagctggggctcccgtcgatcgagaaggcgggagtggcgcacaagatcgacttccgg 180
Query: 555 gagggccccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcg 614
||||| |||||||| || || |||||| | || |||| ||| ||| | || ||||||
Sbjct: 181 gagggacccgcgctgccggtgctggaccagctggtggaggaggagggcaaccatgggtcg 240
Query: 615 ttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctc 674
|||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 241 ttcgacttcgtgttcgtcgacgccgacaaggacaactacctcaactaccacgagcggctg 300
Query: 675 ctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtggaacggctcc 734
|||||||||| | | |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 301 atgaagctggtcaaggtcggcggcctcgtcggctacgacaacacgctctggaacggctcc 360
Query: 735 gtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgcgacttcgtc 794
||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 361 gtcgtgctccccgccgacgcccccatgcgcaagtacatccgctactaccgcgacttcgtg 420
Query: 795 ctcgccctcaacagcgcgctcgccgccg 822
|||| ||||||| || ||||||||||
Sbjct: 421 ctcgagctcaacaaggccctcgccgccg 448
>gb|AU069930.1|AU069930 AU069930 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20526_7A, mRNA sequence
Length = 609
Score = 418 bits (211), Expect = e-114
Identities = 420/486 (86%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 121 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 180
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
||||||||||||||||| ||||||||||||||||| || || || |||||||||||||
Sbjct: 181 taccagtacatcctggagacgagcgtgtacccgcgcgacacg-agtgcatgaaggagctc 239
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||| |||||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct: 240 cgcgaggtcaccgccaaccacccatggaacctgatgacgacgtcggcggacgaggggcaa 299
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttcctgaacctgctgctgaagctcatcggcgccaagaagaccatggagatcggcgtctac 359
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||| ||||| |||| || |||||||||||||||||
Sbjct: 360 accggctactccctcctcgccaccgccctcgccatccccgacgacggcacgatcttggcg 419
Query: 474 atggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaaggccggcgtg 533
|||||||||||||| |||||||||||||| || || || | ||| | ||||| || |||
Sbjct: 420 atggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaaggcgggagtg 479
Query: 534 ggccacaagatcgac-ttccgcgagggccccgcgctccccgtcctggacgacctcgtggc 592
| |||||||||||| ||||| ||||| |||||||| || || |||||| | || ||||
Sbjct: 480 gcgcacaagatcgactttccgggagggacccgcgctgccggtgctggaccanctggtgga 539
Query: 593 ggacaaggagcagcacgggtcgttcgacttcgccttcgt-ggacgccgacaaggacaact 651
||| ||| | || |||||||||||||||| ||||| | |||||||||| |||||||
Sbjct: 540 ggaggagggcaaacatgggtcgttcgacttcgtgttcgtcgaacgccgacaaagacaact 599
Query: 652 acctca 657
||||||
Sbjct: 600 acctca 605
>gb|AY644636.1| Oryza sativa (japonica cultivar-group) caffeoyl-CoA
O-methyltransferase (COA1) gene, complete cds
Length = 1272
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 746 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 805
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 806 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 865
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 866 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 925
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 926 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 985
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 986 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 1045
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 1046 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 1105
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 1106 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 1165
Query: 884 caagtg 889
||||||
Sbjct: 1166 caagtg 1171
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 508 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 567
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 568 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 627
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 628 ccctcgccatccccgacgacggcacg 653
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 328 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 387
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 388 gaggtcaccgccaaccacccatgg 411
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 167 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 226
Query: 234 taccag 239
||||||
Sbjct: 227 taccag 232
>gb|AACV01013091.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013091, whole
genome shotgun sequence
Length = 25948
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Minus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 11381 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 11322
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 11321 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 11262
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 11261 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 11202
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 11201 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 11142
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 11141 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 11082
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 11081 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 11022
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 11021 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 10962
Query: 884 caagtg 889
||||||
Sbjct: 10961 caagtg 10956
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Minus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 11619 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 11560
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 11559 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 11500
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 11499 ccctcgccatccccgacgacggcacg 11474
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Minus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 11798 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 11739
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 11738 gaggtcaccgccaaccacccatgg 11715
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Minus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 11959 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 11900
Query: 234 taccag 239
||||||
Sbjct: 11899 taccag 11894
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
clone P0680A03
Length = 156054
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 5373 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 5432
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 5433 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 5492
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 5493 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 5552
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 5553 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 5612
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 5613 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 5672
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 5673 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 5732
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 5733 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 5792
Query: 884 caagtg 889
||||||
Sbjct: 5793 caagtg 5798
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 5135 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 5194
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5195 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 5254
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 5255 ccctcgccatccccgacgacggcacg 5280
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 4955 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 5014
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 5015 gaggtcaccgccaaccacccatgg 5038
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 4794 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 4853
Query: 234 taccag 239
||||||
Sbjct: 4854 taccag 4859
>dbj|AP002536.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0015I14
Length = 150650
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 101182 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 101241
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 101242 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 101301
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 101302 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 101361
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 101362 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 101421
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 101422 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 101481
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 101482 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 101541
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 101542 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 101601
Query: 884 caagtg 889
||||||
Sbjct: 101602 caagtg 101607
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 100944 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 101003
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 101004 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 101063
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 101064 ccctcgccatccccgacgacggcacg 101089
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 100764 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 100823
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 100824 gaggtcaccgccaaccacccatgg 100847
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 100603 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 100662
Query: 234 taccag 239
||||||
Sbjct: 100663 taccag 100668
>ref|NT_079872.2| Oryza sativa (japonica cultivar-group)
Length = 1124013
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 401850 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 401909
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 401910 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 401969
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 401970 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 402029
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 402030 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 402089
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 402090 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 402149
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 402150 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 402209
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 402210 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 402269
Query: 884 caagtg 889
||||||
Sbjct: 402270 caagtg 402275
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 401612 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 401671
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 401672 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 401731
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 401732 ccctcgccatccccgacgacggcacg 401757
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 401432 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 401491
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 401492 gaggtcaccgccaaccacccatgg 401515
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 401271 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 401330
Query: 234 taccag 239
||||||
Sbjct: 401331 taccag 401336
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 3207196 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 3207255
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 3207256 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 3207315
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 3207316 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 3207375
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 3207376 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 3207435
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 3207436 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 3207495
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 3207496 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 3207555
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 3207556 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 3207615
Query: 884 caagtg 889
||||||
Sbjct: 3207616 caagtg 3207621
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 3206958 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 3207017
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3207018 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 3207077
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 3207078 ccctcgccatccccgacgacggcacg 3207103
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 3206779 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 3206838
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 3206839 gaggtcaccgccaaccacccatgg 3206862
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 3206618 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 3206677
Query: 234 taccag 239
||||||
Sbjct: 3206678 taccag 3206683
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 3207196 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 3207255
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 3207256 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 3207315
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 3207316 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 3207375
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 3207376 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 3207435
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 3207436 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 3207495
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 3207496 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 3207555
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 3207556 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 3207615
Query: 884 caagtg 889
||||||
Sbjct: 3207616 caagtg 3207621
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 3206958 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 3207017
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3207018 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 3207077
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 3207078 ccctcgccatccccgacgacggcacg 3207103
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 3206779 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 3206838
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 3206839 gaggtcaccgccaaccacccatgg 3206862
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 3206618 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 3206677
Query: 234 taccag 239
||||||
Sbjct: 3206678 taccag 3206683
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 416 bits (210), Expect = e-113
Identities = 372/426 (87%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 3313819 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 3313878
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggacga 583
||| || |||| ||||||||||||||||| ||||| |||||||| || || |||||| |
Sbjct: 3313879 ggcgggagtggcgcacaagatcgacttccgggagggacccgcgctgccggtgctggacca 3313938
Query: 584 cctcgtggcggacaaggagcagcacgggtcgttcgacttcgccttcgtggacgccgacaa 643
|| |||| ||| ||| | || |||||||||||||||| ||||| |||||||||||
Sbjct: 3313939 gctggtggaggaggagggcaaccatgggtcgttcgacttcgtgttcgtcgacgccgacaa 3313998
Query: 644 ggacaactacctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcat 703
|||||||||||||| ||||||||||||||| |||||||||| | | |||||||||| |
Sbjct: 3313999 ggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtcggcggcctcgt 3314058
Query: 704 cggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcg 763
|||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 3314059 cggctacgacaacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcg 3314118
Query: 764 caagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccga 823
|||||||||||||| ||||||||||||||| |||| ||||||| || |||||||||||
Sbjct: 3314119 caagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccga 3314178
Query: 824 cgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgt 883
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 3314179 ccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgt 3314238
Query: 884 caagtg 889
||||||
Sbjct: 3314239 caagtg 3314244
Score = 155 bits (78), Expect = 7e-035
Identities = 129/146 (88%)
Strand = Plus / Plus
Query: 319 ggaacctgatgaccacctccgccgacgagggccagttcctcaacatgctcatcaagctca 378
||||||||||||| || || || |||||||| || ||||| ||| |||| | |||||||
Sbjct: 3313581 ggaacctgatgacgacgtcggcggacgaggggcaattcctgaacctgctgctgaagctca 3313640
Query: 379 tcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccg 438
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3313641 tcggcgccaagaagaccatggagatcggcgtctacaccggctactccctcctcgccaccg 3313700
Query: 439 cgctcgcactcccggaggacggcacg 464
| ||||| |||| || |||||||||
Sbjct: 3313701 ccctcgccatccccgacgacggcacg 3313726
Score = 103 bits (52), Expect = 2e-019
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 237 cagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgc 296
|||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| |||
Sbjct: 3313401 cagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgc 3313460
Query: 297 gagatcaccgccaagcacccatgg 320
||| |||||||||| |||||||||
Sbjct: 3313461 gaggtcaccgccaaccacccatgg 3313484
Score = 99.6 bits (50), Expect = 3e-018
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 3313240 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 3313299
Query: 234 taccag 239
||||||
Sbjct: 3313300 taccag 3313305
>gb|CV728538.1|CV728538 COLD--01-N06.b1 Cold treated rice leaf lambda phage cDNA library
(COLD) Oryza sativa (japonica cultivar-group) cDNA clone
COLD--01-N06, mRNA sequence
Length = 444
Score = 406 bits (205), Expect = e-110
Identities = 298/329 (90%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 99 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 158
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 159 taccagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctc 218
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||| |||||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct: 219 cgcgaggtcaccgccaaccacccatggaacctgatgacgacgtcggcggacgaggggcaa 278
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttcctgaacctgctgctgaagctcatcggcgccaagaagaccatggagatcggcgtctac 338
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||| ||||| |||| || |||||||||||||||||
Sbjct: 339 accggctactccctcctcgccaccgccctcgccatccccgacgacggcacgatcttggcg 398
Query: 474 atggacatcaaccgcgagaactacgagct 502
|||||||||||||| ||||||||||||||
Sbjct: 399 atggacatcaaccgggagaactacgagct 427
>gb|CF293401.1|CF293401 30DGS--02-J06.b1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-J06, mRNA sequence
Length = 474
Score = 398 bits (201), Expect = e-108
Identities = 297/329 (90%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 136 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 195
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 196 taccagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctc 255
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||| |||||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct: 256 cgcgaggtcaccgccaaccacccatggaacctgatgacgacgtcggcggacgaggggcaa 315
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||| | | |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttcctgagcctgctgctgaagctcatcggcgccaagaagaccatggagatcggcgtctac 375
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggcc 473
||||||||||| |||||||||||||| ||||| |||| || |||||||||||||||||
Sbjct: 376 accggctactccctcctcgccaccgccctcgccatccccgacgacggcacgatcttggcg 435
Query: 474 atggacatcaaccgcgagaactacgagct 502
|||||||||||||| ||||||||||||||
Sbjct: 436 atggacatcaaccgggagaactacgagct 464
>gb|CV721193.1|CV721193 YBH--03-D16.b1 Rice before heading yeast two hybrid lambda phage
cDNA library (YBH) Oryza sativa (japonica
cultivar-group) cDNA clone YBH--03-D16, mRNA sequence
Length = 344
Score = 398 bits (201), Expect = e-108
Identities = 294/325 (90%)
Strand = Plus / Plus
Query: 178 agaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctctacc 237
|||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 10 agaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctctacc 69
Query: 238 agtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctgcgcg 297
||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||| ||||
Sbjct: 70 agtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctccgcg 129
Query: 298 agatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccagttcc 357
|| |||||||||| |||||||||||||||||||| || || || |||||||| || ||||
Sbjct: 130 aggtcaccgccaaccacccatggaacctgatgacgacgtcggcggacgaggggcaattcc 189
Query: 358 tcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctacaccg 417
| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgaacctgctgctgaagctcatcggcgccaagaagaccatggagatcggcgtctacaccg 249
Query: 418 gctactcgctcctcgccaccgcgctcgcactcccggaggacggcacgatcttggccatgg 477
||||||| |||||||||||||| ||||| |||| || ||||||||||||||||| ||||
Sbjct: 250 gctactccctcctcgccaccgccctcgccatccccgacgacggcacgatcttggcgatgg 309
Query: 478 acatcaaccgcgagaactacgagct 502
|||||||||| ||||||||||||||
Sbjct: 310 acatcaaccgggagaactacgagct 334
>gb|CF293402.1|CF293402 30DGS--02-J06.g1 Rice leaf plasmid cDNA library I (30DGS) Oryza
sativa (japonica cultivar-group) cDNA clone
30DGS--02-J06, mRNA sequence
Length = 546
Score = 367 bits (185), Expect = 9e-099
Identities = 257/281 (91%)
Strand = Plus / Minus
Query: 609 gggtcgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgag 668
|||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 494 gggtcgttcgacttcgtgttcgtcgacgccgacaaggacaactacctcaactaccacgag 435
Query: 669 cggctcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtggaac 728
||||| |||||||||| | | |||||||||| ||||||||||||||||||| ||||||
Sbjct: 434 cggctgatgaagctggtcaaggtcggcggcctcgtcggctacgacaacacgctctggaac 375
Query: 729 ggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacatccgcttctaccgcgac 788
||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||
Sbjct: 374 ggctccgtcgtgctccccgccgacgcccccatgcgcaagtacatccgctactaccgcgac 315
Query: 789 ttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgtcgagatctgccagctc 848
||||| |||| ||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct: 314 ttcgtgctcgagctcaacaaggccctcgccgccgaccaccgcgtcgagatctgccagctc 255
Query: 849 cccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 254 cccgtcggcgacggcatcaccctctgccgccgcgtcaagtg 214
>gb|CA756287.1|CA756287 BR030039000_PLATE_D05_36_044.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030039000_PLATE_D05_36_044.ab1 similar to ESTs
AU058067(E20733), AAU058070(E20873) correspond to a,
mRNA sequence
Length = 624
Score = 347 bits (175), Expect = 9e-093
Identities = 262/291 (90%)
Strand = Plus / Plus
Query: 174 gagcagaagacgcgccactccgaggtcggccacaagagcctgctcaagagcgacgacctc 233
|||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct: 119 gagcagaagacgcggcactcggaggtcggccacaagagcctcctcaagagcgacgatctc 178
Query: 234 taccagtacatcctggacacgagcgtgtacccgcgggagccggagagcatgaaggagctg 293
||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||
Sbjct: 179 taccagtacatcctggagacgagcgtgtacccgcgcgagcacgagtgcatgaaggagctc 238
Query: 294 cgcgagatcaccgccaagcacccatggaacctgatgaccacctccgccgacgagggccag 353
|||||| |||||||||| |||||||||||||||||||| || || || |||||||| ||
Sbjct: 239 cgcgaggtcaccgccaaccacccatggaacctgatgacgacgtcggcggacgaggggcaa 298
Query: 354 ttcctcaacatgctcatcaagctcatcggcgccaagaagaccatggagatcggcgtctac 413
||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttcctgaacctgctgctgaagctcatcggcgccaagaagaccatggagatcggcgtctac 358
Query: 414 accggctactcgctcctcgccaccgcgctcgcactcccggaggacggcacg 464
||||||||||| |||||||||||||| ||||| |||| || |||||||||
Sbjct: 359 accggctactccctcctcgccaccgccctcgccatccccgacgacggcacg 409
Score = 77.8 bits (39), Expect = 1e-011
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 464 gatcttggccatggacatcaaccgcgagaactacgagctaggccttccctgcatcaacaa 523
||||||||| |||||||||||||| |||||||||||||| || || || | ||| | ||
Sbjct: 502 gatcttggcgatggacatcaaccgggagaactacgagctggggctcccgtcgatcgagaa 561
Query: 524 ggccggcgtgggccacaagatcgacttccgcgagggccccgcgctccccgtcctggac 581
||| || |||| ||| ||||||||||||| ||||| |||||||| || || ||||||
Sbjct: 562 ggcgggagtggcgcacnagatcgacttccgggagggacccgcgctgccggtgctggac 619
>gb|AU198028.1|AU198028 AU198028 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S15067, mRNA sequence
Length = 451
Score = 343 bits (173), Expect = 1e-091
Identities = 236/257 (91%)
Strand = Plus / Plus
Query: 633 gacgccgacaaggacaactacctcagctaccacgagcggctcctgaagctggtgaggccc 692
||||||||||||||||||||||||| ||||||||||||||| |||||||||| | | |
Sbjct: 1 gacgccgacaaggacaactacctcaactaccacgagcggctgatgaagctggtcaaggtc 60
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 61 ggcggcctcgtcggctacgacaacacgctctggaacggctccgtcgtgctccccgccgac 120
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||
Sbjct: 121 gcccccatgcgcaagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggcc 180
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 181 ctcgccgccgaccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 240
Query: 873 tgccgccgcgtcaagtg 889
|||||||||||||||||
Sbjct: 241 tgccgccgcgtcaagtg 257
>gb|AU182288.1|AU182288 AU182288 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1596, mRNA sequence
Length = 426
Score = 295 bits (149), Expect = 3e-077
Identities = 214/236 (90%)
Strand = Plus / Plus
Query: 653 cctcagctaccacgagcggctcctgaagctggtgaggcccggcggcctcatcggctacga 712
||||| || |||||||||||| |||||||||| | | |||||||||| ||||||||||
Sbjct: 2 cctcaactnccacgagcggctgatgaagctggtcaaggtcggcggcctcgtcggctacga 61
Query: 713 caacacgctgtggaacggctccgtcgtgctccccgacgacgcgcccatgcgcaagtacat 772
||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 62 caacacgctctggaacggctccgtcgtgctccccgccgacgcccccatgcgcaagtacat 121
Query: 773 ccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgt 832
||||| ||||||||||||||| |||| ||||||| || |||||||||||| |||||||
Sbjct: 122 ccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccgaccaccgcgt 181
Query: 833 cgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagt 888
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 182 cgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgtcaagt 237
>gb|AU058070.1|AU058070 AU058070 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20873_1A, mRNA sequence
Length = 420
Score = 264 bits (133), Expect = 1e-067
Identities = 182/197 (92%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 693 ggcggcctcatcggctacgacaacacgctgtggaacggctccgtcgtgctccccgacgac 752
||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 1 ggcggcctcgtcggctacg-caacacgctctggaacggctccgtcgtgctccccgccgac 59
Query: 753 gcgcccatgcgcaagtacatccgcttctaccgcgacttcgtcctcgccctcaacagcgcg 812
|| |||||||||||||||||||||| ||||||||||||||| |||| ||||||| ||
Sbjct: 60 gcccccatgcgcaagtacatccgctactaccgcgacttcgtgctcgagctcaacaaggcc 119
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 120 ctcgccgccgaccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 179
Query: 873 tgccgccgcgtcaagtg 889
|||||||||||||||||
Sbjct: 180 tgccgccgcgtcaagtg 196
>gb|AU058067.2|AU058067 AU058067 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20733_1A, mRNA sequence
Length = 294
Score = 153 bits (77), Expect = 3e-034
Identities = 107/117 (91%)
Strand = Plus / Plus
Query: 773 ccgcttctaccgcgacttcgtcctcgccctcaacagcgcgctcgccgccgacgaccgcgt 832
||||| ||||||||||||||| |||| ||||||| || |||||||||||| |||||||
Sbjct: 1 ccgctactaccgcgacttcgtgctcgagctcaacaaggccctcgccgccgaccaccgcgt 60
Query: 833 cgagatctgccagctccccgtcggcgacggcgtcacgctctgccgccgcgtcaagtg 889
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 61 cgagatctgccagctccccgtcggcgacggcatcaccctctgccgccgcgtcaagtg 117
>gb|AU101378.1|AU101378 AU101378 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20733, mRNA sequence
Length = 338
Score = 129 bits (65), Expect = 4e-027
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 813 ctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctc 872
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 56 ctcgccgccgaccaccgcgtcgagatctgccagctccccgtcggcgacggcatcaccctc 115
Query: 873 tgccgccgcgtcaagtg 889
|||||||||||||||||
Sbjct: 116 tgccgccgcgtcaagtg 132
>dbj|AK061757.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A06, full
insert sequence
Length = 1149
Score = 129 bits (65), Expect = 4e-027
Identities = 272/341 (79%)
Strand = Plus / Plus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 438 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 497
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 498 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 557
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 558 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 617
Query: 561 cccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgac 620
|||| | ||| |||| ||| ||||| | || || ||||| | | ||| |||||||
Sbjct: 618 gccgccatgcccatcctcgacaacctcctcgccaacgaggagaacgaggggaagttcgac 677
Query: 621 ttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcctgaag 680
||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| |
Sbjct: 678 ttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggctgctgcgg 737
Query: 681 ctggtgaggcccggcggcctcatcggctacgacaacacgct 721
|||||| | |||||||| | | | |||||||||||||||
Sbjct: 738 ctggtgcgcgccggcggcgtgctggcctacgacaacacgct 778
>dbj|AK065515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030H15, full
insert sequence
Length = 1466
Score = 129 bits (65), Expect = 4e-027
Identities = 272/341 (79%)
Strand = Plus / Plus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 591 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 650
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 651 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 710
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 711 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 770
Query: 561 cccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgac 620
|||| | ||| |||| ||| ||||| | || || ||||| | | ||| |||||||
Sbjct: 771 gccgccatgcccatcctcgacaacctcctcgccaacgaggagaacgaggggaagttcgac 830
Query: 621 ttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcctgaag 680
||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| |
Sbjct: 831 ttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggctgctgcgg 890
Query: 681 ctggtgaggcccggcggcctcatcggctacgacaacacgct 721
|||||| | |||||||| | | | |||||||||||||||
Sbjct: 891 ctggtgcgcgccggcggcgtgctggcctacgacaacacgct 931
>ref|XM_483169.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 879
Score = 129 bits (65), Expect = 4e-027
Identities = 272/341 (79%)
Strand = Plus / Plus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 370 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 429
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 430 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 489
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 490 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 549
Query: 561 cccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgac 620
|||| | ||| |||| ||| ||||| | || || ||||| | | ||| |||||||
Sbjct: 550 gccgccatgcccatcctcgacaacctcctcgccaacgaggagaacgaggggaagttcgac 609
Query: 621 ttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcctgaag 680
||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| |
Sbjct: 610 ttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggctgctgcgg 669
Query: 681 ctggtgaggcccggcggcctcatcggctacgacaacacgct 721
|||||| | |||||||| | | | |||||||||||||||
Sbjct: 670 ctggtgcgcgccggcggcgtgctggcctacgacaacacgct 710
>ref|XM_483170.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 612
Score = 129 bits (65), Expect = 4e-027
Identities = 272/341 (79%)
Strand = Plus / Plus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 103 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 162
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 163 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 222
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 223 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 282
Query: 561 cccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgac 620
|||| | ||| |||| ||| ||||| | || || ||||| | | ||| |||||||
Sbjct: 283 gccgccatgcccatcctcgacaacctcctcgccaacgaggagaacgaggggaagttcgac 342
Query: 621 ttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcctgaag 680
||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| |
Sbjct: 343 ttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggctgctgcgg 402
Query: 681 ctggtgaggcccggcggcctcatcggctacgacaacacgct 721
|||||| | |||||||| | | | |||||||||||||||
Sbjct: 403 ctggtgcgcgccggcggcgtgctggcctacgacaacacgct 443
>ref|XM_507282.1| PREDICTED Oryza sativa (japonica cultivar-group), P0026F07.26-2
mRNA
Length = 1149
Score = 129 bits (65), Expect = 4e-027
Identities = 272/341 (79%)
Strand = Plus / Plus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 438 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 497
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 498 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 557
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 558 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 617
Query: 561 cccgcgctccccgtcctggacgacctcgtggcggacaaggagcagcacgggtcgttcgac 620
|||| | ||| |||| ||| ||||| | || || ||||| | | ||| |||||||
Sbjct: 618 gccgccatgcccatcctcgacaacctcctcgccaacgaggagaacgaggggaagttcgac 677
Query: 621 ttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggctcctgaag 680
||||| ||||||||||||||||||| |||||| | |||||||||||||| ||| |
Sbjct: 678 ttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggctgctgcgg 737
Query: 681 ctggtgaggcccggcggcctcatcggctacgacaacacgct 721
|||||| | |||||||| | | | |||||||||||||||
Sbjct: 738 ctggtgcgcgccggcggcgtgctggcctacgacaacacgct 778
>dbj|AK108479.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F02, full
insert sequence
Length = 959
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Plus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 536 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 595
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 596 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 647
Score = 77.8 bits (39), Expect = 1e-011
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 292 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 351
Query: 433 ccaccgcgctcgcactcccggaggacggcacgatcttggccat 475
||||||| ||||| ||||| || ||||||| |||| |||||||
Sbjct: 352 ccaccgccctcgcgctccctgacgacggcaagatcgtggccat 394
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 748 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 807
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 808 gccgccgcgt 817
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 442 acaaggccggcgtggcgcacaaggtcgacttccgcg 477
>gb|AACV01020268.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020268, whole
genome shotgun sequence
Length = 5761
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Plus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 3737 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 3796
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 3797 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 3848
Score = 67.9 bits (34), Expect = 1e-008
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 3333 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 3392
Query: 433 ccaccgcgctcgcactcccggaggacggca 462
||||||| ||||| ||||| || |||||||
Sbjct: 3393 ccaccgccctcgcgctccctgacgacggca 3422
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 3949 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 4008
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 4009 gccgccgcgt 4018
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 3563 acaaggccggcgtggcgcacaaggtcgacttccgcg 3598
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 4112608 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 4112549
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 4112548 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 4112497
Score = 67.9 bits (34), Expect = 1e-008
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 4113012 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 4112953
Query: 433 ccaccgcgctcgcactcccggaggacggca 462
||||||| ||||| ||||| || |||||||
Sbjct: 4112952 ccaccgccctcgcgctccctgacgacggca 4112923
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 4112396 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 4112337
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 4112336 gccgccgcgt 4112327
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 4112782 acaaggccggcgtggcgcacaaggtcgacttccgcg 4112747
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463D04
Length = 145828
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 82679 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 82620
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 82619 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 82568
Score = 67.9 bits (34), Expect = 1e-008
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 83083 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 83024
Query: 433 ccaccgcgctcgcactcccggaggacggca 462
||||||| ||||| ||||| || |||||||
Sbjct: 83023 ccaccgccctcgcgctccctgacgacggca 82994
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 82467 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 82408
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 82407 gccgccgcgt 82398
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 82853 acaaggccggcgtggcgcacaaggtcgacttccgcg 82818
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0463G11
Length = 154188
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 135541 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 135482
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 135481 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 135430
Score = 67.9 bits (34), Expect = 1e-008
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 135945 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 135886
Query: 433 ccaccgcgctcgcactcccggaggacggca 462
||||||| ||||| ||||| || |||||||
Sbjct: 135885 ccaccgccctcgcgctccctgacgacggca 135856
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 135329 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 135270
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 135269 gccgccgcgt 135260
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 135715 acaaggccggcgtggcgcacaaggtcgacttccgcg 135680
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 7719745 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 7719686
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 7719685 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 7719634
Score = 67.9 bits (34), Expect = 1e-008
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 7720149 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 7720090
Query: 433 ccaccgcgctcgcactcccggaggacggca 462
||||||| ||||| ||||| || |||||||
Sbjct: 7720089 ccaccgccctcgcgctccctgacgacggca 7720060
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 7719533 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 7719474
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 7719473 gccgccgcgt 7719464
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 7719919 acaaggccggcgtggcgcacaaggtcgacttccgcg 7719884
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 17193556 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 17193497
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 17193496 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 17193445
Score = 67.9 bits (34), Expect = 1e-008
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 17193960 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 17193901
Query: 433 ccaccgcgctcgcactcccggaggacggca 462
||||||| ||||| ||||| || |||||||
Sbjct: 17193900 ccaccgccctcgcgctccctgacgacggca 17193871
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 17193344 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 17193285
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 17193284 gccgccgcgt 17193275
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 17193730 acaaggccggcgtggcgcacaaggtcgacttccgcg 17193695
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 127 bits (64), Expect = 1e-026
Identities = 100/112 (89%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||| ||||||| |||| |||| ||||||||||||||||
Sbjct: 18420805 gttcgacttcgcgttcgtggacgcggacaaggtgaacttcctcggctaccacgagcggct 18420746
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||||||||||||| |||||||||||||||||||
Sbjct: 18420745 gctgcagctggtcagggtcggcggcctcatcgcctacgacaacacgctgtgg 18420694
Score = 67.9 bits (34), Expect = 1e-008
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 373 agctcatcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcg 432
|||| ||| |||||||||| |||| ||| ||||||| | |||||| |||||||| ||||
Sbjct: 18421209 agctgatcagcgccaagaacgccatcgaggtcggcgtgttcaccgggtactcgctgctcg 18421150
Query: 433 ccaccgcgctcgcactcccggaggacggca 462
||||||| ||||| ||||| || |||||||
Sbjct: 18421149 ccaccgccctcgcgctccctgacgacggca 18421120
Score = 60.0 bits (30), Expect = 3e-006
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||| ||||||| || ||||||||| || ||| ||||||||||| |||||
Sbjct: 18420593 tcgccgccgaccgccgcgtcaagccgtgccagctcgccatcgccgacggcgtcatgctct 18420534
Query: 874 gccgccgcgt 883
||||||||||
Sbjct: 18420533 gccgccgcgt 18420524
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 520 acaaggccggcgtgggccacaagatcgacttccgcg 555
||||||||||||||| |||||| ||||||||||||
Sbjct: 18420979 acaaggccggcgtggcgcacaaggtcgacttccgcg 18420944
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0026F07
Length = 137354
Score = 105 bits (53), Expect = 5e-020
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 95118 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 95059
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 95058 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 94999
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 94998 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 94939
Query: 561 cccgc 565
||||
Sbjct: 94938 gccgc 94934
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 99000 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 98941
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 98940 gccgccgcctcaagtg 98925
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 88168 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 88109
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 88108 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 88056
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 99433 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 99374
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 99373 gcgctggccctccccgacgacggca 99349
Score = 63.9 bits (32), Expect = 2e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 94801 gttcgacttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggct 94742
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
||| ||||||| | |||||||| | | | |||||||||||||||
Sbjct: 94741 gctgcggctggtgcgcgccggcggcgtgctggcctacgacaacacgct 94694
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 87969 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 87910
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 87909 ctgccgccgc 87900
>gb|AACV01018795.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018795, whole
genome shotgun sequence
Length = 16642
Score = 105 bits (53), Expect = 5e-020
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 9471 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 9412
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 9411 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 9352
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 9351 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 9292
Query: 561 cccgc 565
||||
Sbjct: 9291 gccgc 9287
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 13353 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 13294
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 13293 gccgccgcctcaagtg 13278
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 2517 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 2458
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 2457 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 2405
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 13787 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 13728
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 13727 gcgctggccctccccgacgacggca 13703
Score = 63.9 bits (32), Expect = 2e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 9154 gttcgacttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggct 9095
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
||| ||||||| | |||||||| | | | |||||||||||||||
Sbjct: 9094 gctgcggctggtgcgcgccggcggcgtgctggcctacgacaacacgct 9047
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 2318 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 2259
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 2258 ctgccgccgc 2249
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 105 bits (53), Expect = 5e-020
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 24348771 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 24348712
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 24348711 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 24348652
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 24348651 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 24348592
Query: 561 cccgc 565
||||
Sbjct: 24348591 gccgc 24348587
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 24352653 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 24352594
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 24352593 gccgccgcctcaagtg 24352578
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 24341821 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 24341762
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 24341761 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 24341709
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 24353086 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 24353027
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 24353026 gcgctggccctccccgacgacggca 24353002
Score = 63.9 bits (32), Expect = 2e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 24348454 gttcgacttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggct 24348395
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
||| ||||||| | |||||||| | | | |||||||||||||||
Sbjct: 24348394 gctgcggctggtgcgcgccggcggcgtgctggcctacgacaacacgct 24348347
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 24341622 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 24341563
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 24341562 ctgccgccgc 24341553
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 105 bits (53), Expect = 5e-020
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 15833105 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 15833046
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 15833045 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 15832986
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 15832985 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 15832926
Query: 561 cccgc 565
||||
Sbjct: 15832925 gccgc 15832921
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 15836987 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 15836928
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 15836927 gccgccgcctcaagtg 15836912
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 15826151 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 15826092
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 15826091 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 15826039
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 15837421 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 15837362
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 15837361 gcgctggccctccccgacgacggca 15837337
Score = 63.9 bits (32), Expect = 2e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 15832788 gttcgacttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggct 15832729
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
||| ||||||| | |||||||| | | | |||||||||||||||
Sbjct: 15832728 gctgcggctggtgcgcgccggcggcgtgctggcctacgacaacacgct 15832681
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 15825952 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 15825893
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 15825892 ctgccgccgc 15825883
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 105 bits (53), Expect = 5e-020
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 23435111 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 23435052
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 23435051 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 23434992
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 23434991 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 23434932
Query: 561 cccgc 565
||||
Sbjct: 23434931 gccgc 23434927
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 23438993 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 23438934
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 23438933 gccgccgcctcaagtg 23438918
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 23428157 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 23428098
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 23428097 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 23428045
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 23439427 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 23439368
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 23439367 gcgctggccctccccgacgacggca 23439343
Score = 63.9 bits (32), Expect = 2e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 23434794 gttcgacttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggct 23434735
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
||| ||||||| | |||||||| | | | |||||||||||||||
Sbjct: 23434734 gctgcggctggtgcgcgccggcggcgtgctggcctacgacaacacgct 23434687
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 23427958 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 23427899
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 23427898 ctgccgccgc 23427889
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 105 bits (53), Expect = 5e-020
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 381 ggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccaccgcg 440
||||||||||| ||||| ||| | ||||| | |||||||| ||| | ||||||||||||
Sbjct: 24586858 ggcgccaagaacaccatcgaggtgggcgtgttcaccggctgctccgtgctcgccaccgcg 24586799
Query: 441 ctcgcactcccggaggacggcacgatcttggccatggacatcaaccgcgagaactacgag 500
||||| ||||||| ||||||| | || | ||||| ||| ||| ||| ||| ||| |||
Sbjct: 24586798 ctcgccatcccggacgacggcaaggtcgtcgccatcgacgtcagccgggagtacttcgac 24586739
Query: 501 ctaggccttccctgcatcaacaaggccggcgtgggccacaagatcgacttccgcgagggc 560
|| ||||| ||| |||||| ||||||||||| | ||||||| |||||||||||||||||
Sbjct: 24586738 ctcggcctccccgtcatcaagaaggccggcgtcgcccacaaggtcgacttccgcgagggc 24586679
Query: 561 cccgc 565
||||
Sbjct: 24586678 gccgc 24586674
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 24590740 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 24590681
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 24590680 gccgccgcctcaagtg 24590665
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 24579908 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 24579849
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 24579848 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 24579796
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 24591173 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 24591114
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 24591113 gcgctggccctccccgacgacggca 24591089
Score = 63.9 bits (32), Expect = 2e-007
Identities = 89/108 (82%)
Strand = Plus / Minus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 24586541 gttcgacttcgcgttcgtggacgccgacaaggggaactacggcgagtaccacgagcggct 24586482
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgct 721
||| ||||||| | |||||||| | | | |||||||||||||||
Sbjct: 24586481 gctgcggctggtgcgcgccggcggcgtgctggcctacgacaacacgct 24586434
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 24579709 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 24579650
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 24579649 ctgccgccgc 24579640
>gb|AU070794.1|AU070794 AU070794 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10255_1A, mRNA sequence
Length = 261
Score = 103 bits (52), Expect = 2e-019
Identities = 96/112 (85%)
Strand = Plus / Plus
Query: 614 gttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggct 673
|||||||||||| ||||||||| | ||||||| |||| |||| |||||||| |||||||
Sbjct: 145 gttcgacttcgcgttcgtggacncggacaaggtgaacttcctcggctaccacnagcggct 204
Query: 674 cctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
||| ||||||| ||| |||| |||||||| |||||||||||||||||||
Sbjct: 205 gctgcagctggtcagggtcggcngcctcatcncctacgacaacacgctgtgg 256
>dbj|AK106735.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A04, full
insert sequence
Length = 1895
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 1604 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 1663
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 1664 gccgccgcctcaagtg 1679
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 1171 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 1230
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 1231 gcgctggccctccccgacgacggca 1255
>gb|AY644638.1| Oryza sativa (japonica cultivar-group) caffeoyl-CoA
O-methyltransferase (COA26) gene, complete cds
Length = 1116
Score = 95.6 bits (48), Expect = 5e-017
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 814 tcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgctct 873
||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
Sbjct: 940 tcgccgccgacgaccgcgtcgaggcatgcctgctccccgtcgccgacggcgtcacgctgt 999
Query: 874 gccgccgcgtcaagtg 889
|||||||| |||||||
Sbjct: 1000 gccgccgcctcaagtg 1015
Score = 73.8 bits (37), Expect = 2e-010
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 378 atcggcgccaagaagaccatggagatcggcgtctacaccggctactcgctcctcgccacc 437
|||||||||| ||| || | ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 507 atcggcgccaggaacgccgtcgaggtcggcgtcttcaccggctactcgctgctcgccacc 566
Query: 438 gcgctcgcactcccggaggacggca 462
||||| || ||||| || |||||||
Sbjct: 567 gcgctggccctccccgacgacggca 591
>gb|AU101479.1|AU101479 AU101479 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50819, mRNA sequence
Length = 614
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 155 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 214
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 215 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 267
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 354 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 413
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 414 ctgccgccgc 423
>gb|AU164542.1|AU164542 AU164542 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0434, mRNA sequence
Length = 671
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 188 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 247
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 248 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 300
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 387 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 446
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 447 ctgccgccgc 456
>gb|CA755835.1|CA755835 BR030029000_PLATE_D01_4_012.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR030029000_PLATE_D01_4_012.ab1 similar to ESTs
AU030740(E60171),AU030739(E60171) correspond to a region
of the predicted gene.Similar to Populus tremuloides
caffeoyl-CoA 3-O-methyltransferase. (U27116) [Oryza
sativa (japonica cultivar-group)], mRNA sequence
Length = 877
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 628 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 687
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 688 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 740
Score = 48.1 bits (24), Expect = 0.011
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacacgagcgtgtacccgcgggag 272
|||||||||||||||| ||| ||| |||| |||||||||||| ||| || ||||||
Sbjct: 131 ctgctcaagagcgacgccctgtacaagtatgtcctggacacgacggtgctgccacgggag 190
Query: 273 ccggagagcatg 284
|||||| |||||
Sbjct: 191 ccggagtgcatg 202
>gb|CB650397.1|CB650397 OSJNEb14N03.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14N03 5', mRNA sequence
Length = 756
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 546 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 605
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 606 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 658
Score = 48.1 bits (24), Expect = 0.011
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacacgagcgtgtacccgcgggag 272
|||||||||||||||| ||| ||| |||| |||||||||||| ||| || ||||||
Sbjct: 137 ctgctcaagagcgacgccctgtacaagtatgtcctggacacgacggtgctgccacgggag 196
Query: 273 ccggagagcatg 284
|||||| |||||
Sbjct: 197 ccggagtgcatg 208
>gb|CB650869.1|CB650869 OSJNEb15J05.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb15J05 5', mRNA sequence
Length = 866
Score = 81.8 bits (41), Expect = 8e-013
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 613 cgttcgacttcgccttcgtggacgccgacaaggacaactacctcagctaccacgagcggc 672
||||||||||||| ||||||||||| |||||| ||||||| ||| |||||||||| ||
Sbjct: 546 cgttcgacttcgcgttcgtggacgcggacaagcccaactacgtcaagtaccacgagcagc 605
Query: 673 tcctgaagctggtgaggcccggcggcctcatcggctacgacaacacgctgtgg 725
| ||| |||||||| | |||||| | ||||| ||||||||||||||||||
Sbjct: 606 tgctgcagctggtgcgcgtcggcgggcacatcgtgtacgacaacacgctgtgg 658
Score = 48.1 bits (24), Expect = 0.011
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 213 ctgctcaagagcgacgacctctaccagtacatcctggacacgagcgtgtacccgcgggag 272
|||||||||||||||| ||| ||| |||| |||||||||||| ||| || ||||||
Sbjct: 137 ctgctcaagagcgacgccctgtacaagtatgtcctggacacgacggtgctgccacgggag 196
Query: 273 ccggagagcatg 284
|||||| |||||
Sbjct: 197 ccggagtgcatg 208
Score = 44.1 bits (22), Expect = 0.17
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 812 gctcgccgccgacgaccgcgtcgagatctgccagctccccgtcggcgacggcgtcacgct 871
||||||||||||| ||| |||| ||||||||||| || ||| ||||||| |||| |
Sbjct: 745 gctcgccgccgacccgcgcatcgacgtctgccagctcgccatcgccgacggcatcaccat 804
Query: 872 ctgccgccgc 881
||||||||||
Sbjct: 805 ctgccgccgc 814
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,841,387
Number of Sequences: 438736
Number of extensions: 1841387
Number of successful extensions: 19687
Number of sequences better than 0.5: 127
Number of HSP's better than 0.5 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18736
Number of HSP's gapped (non-prelim): 901
length of query: 1190
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1169
effective length of database: 2,791,206,460
effective search space: 3262920351740
effective search space used: 3262920351740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)