BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455878.2.1
(1327 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA... 133 3e-028
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 133 3e-028
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 133 3e-028
gb|AC112208.3| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 133 3e-028
gb|AACV01022906.1| Oryza sativa (japonica cultivar-group) c... 125 7e-026
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 125 7e-026
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 125 7e-026
gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) c... 119 4e-024
gb|AU223398.1|AU223398 AU223398 Rice shoot Oryza sativa (ja... 103 2e-019
gb|AC138195.2| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA... 98 1e-017
dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA... 98 1e-017
gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0... 98 1e-017
gb|AACV01022918.1| Oryza sativa (japonica cultivar-group) c... 98 1e-017
dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA... 90 4e-015
gb|AACV01022917.1| Oryza sativa (japonica cultivar-group) c... 90 4e-015
gb|C25075.1|C25075 C25075 Rice shoot Oryza sativa (japonica... 88 1e-014
gb|AACV01022903.1| Oryza sativa (japonica cultivar-group) c... 86 6e-014
ref|NT_107144.1| Oryza sativa (japonica cultivar-group) 82 9e-013
gb|AACV01022672.1| Oryza sativa (japonica cultivar-group) c... 82 9e-013
gb|CH401260.1| Oryza sativa (japonica cultivar-group) chrom... 82 9e-013
gb|AC135258.2| Oryza sativa (japonica cultivar-group) chrom... 82 9e-013
gb|AC147811.2| Oryza sativa (japonica cultivar-group) chrom... 82 9e-013
gb|D42011.1|D42011 RICS5096A Rice shoot Oryza sativa (japon... 76 5e-011
gb|AACV01022671.1| Oryza sativa (japonica cultivar-group) c... 64 2e-007
gb|AACV01022911.1| Oryza sativa (japonica cultivar-group) c... 56 5e-005
gb|AU181055.1|AU181055 AU181055 Rice shoot Oryza sativa (ja... 50 0.003
dbj|AP003916.2| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP005501.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP004560.3| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AC136481.6| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|AC134925.4| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP005188.5| Oryza sativa (japonica cultivar-group) geno... 50 0.003
ref|NT_107129.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|AACV01016104.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01017371.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
gb|AACV01023315.1| Oryza sativa (japonica cultivar-group) c... 50 0.003
ref|XM_478005.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 50 0.003
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 50 0.003
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401228.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.003
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 50 0.003
gb|AU097476.1|AU097476 AU097476 Rice shoot Oryza sativa (ja... 48 0.012
gb|CV722871.1|CV722871 root--01-N05.g1 Rice root lambda pha... 48 0.012
gb|AACV01022921.1| Oryza sativa (japonica cultivar-group) c... 48 0.012
dbj|AP005695.3| Oryza sativa (japonica cultivar-group) geno... 46 0.049
dbj|AP005822.3| Oryza sativa (japonica cultivar-group) geno... 46 0.049
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 46 0.049
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
insert sequence
Length = 1262
Score = 133 bits (67), Expect = 3e-028
Identities = 187/227 (82%)
Strand = Plus / Plus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 86 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 145
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 146 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 205
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 206 ggcaccgcctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctccca 265
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 266 ttcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 312
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 945 cccgcaaagatggagggaaggtgatcatcattga 978
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 728 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 768
Score = 44.1 bits (22), Expect = 0.19
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 774 ccatcccgcctgcgcaggctgtcatgctcaagct 807
||||||| ||||| || |||||||||||||||||
Sbjct: 843 ccatcccacctgctcaagctgtcatgctcaagct 876
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 133 bits (67), Expect = 3e-028
Identities = 187/227 (82%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 521181 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 521122
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 521121 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 521062
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 521061 ggcaccgcctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctccca 521002
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 521001 ttcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 520955
Score = 125 bits (63), Expect = 7e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||| ||| ||||||||||||||||| | | ||
Sbjct: 544829 gacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacg 544770
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| | ||||||| || ||||| |||||| |||||||||||| | |||
Sbjct: 544769 tccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggc 544710
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| || ||||| || | ||||||||||||
Sbjct: 544709 ggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccg 544650
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | |||||||||||||||| ||||||||||||||
Sbjct: 544649 ttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgc 544603
Score = 107 bits (54), Expect = 2e-020
Identities = 171/210 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||| ||||||| |||||||||| ||||||||||||| ||||| |||||| ||
Sbjct: 492573 gacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccctctcctacctcacc 492514
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
|||||| | ||| |||||| || | ||| |||||| |||||||||||| || |||
Sbjct: 492513 tccatgactctccggtgcgccgtccacctcggcatccccaccgccatccaccgccacggc 492454
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct: 492453 ggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctccccacggccaagctcccc 492394
Query: 245 ttcctcgggcgcgtgatgcggctgctggtc 274
|||||| | ||| | |||||||||||||||
Sbjct: 492393 ttcctccgccgcctcatgcggctgctggtc 492364
Score = 103 bits (52), Expect = 2e-019
Identities = 181/224 (80%)
Strand = Plus / Minus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
||||||||| |||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 740074 gccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtcc 740015
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggcggg 187
|||| ||| ||||| || |||||| |||||||||| | ||||| ||| |||||
Sbjct: 740014 atgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggcggc 739955
Query: 188 tctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttc 247
| ||||| | || ||||| |||||||||||||||| || | | ||||||||| |||
Sbjct: 739954 gccgccaccgtccctgacctgatggccgcgctgtccctccctgagaacaagctccctttc 739895
Query: 248 ctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| ||||| ||||||| |||| |||||| || ||||||||||
Sbjct: 739894 ttccggcgcctgatgcgtgtgctcgtcacggcgcgcgtcttcgc 739851
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 684390 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 684331
Query: 116 tacct 120
|||||
Sbjct: 684330 tacct 684326
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 671811 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 671867
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 544178 gccatcgtcgaggccttcccacacatcaagttcaccgtgct 544138
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 71 gagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| || |||||||| || |||||||||||||||| ||||
Sbjct: 629121 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 629074
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 519340 cccgcaaagatggagggaaggtgatcatcattga 519307
Score = 50.1 bits (25), Expect = 0.003
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 195 cgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttcctcgggc 254
||||||| ||||| || |||| |||||||| || || ||||||| ||||||||| | |
Sbjct: 628997 cgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctccgcc 628938
Query: 255 gcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| | ||||||||||||||| || |||||||||||
Sbjct: 628937 gcctcatgcggctgctggtccactccggcgtcttcgc 628901
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 628499 ccatcgtcgaggccttcccacacgtcaagtgcactgtgctggaccttcc 628451
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 520539 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 520499
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 474 tgccgtcgccgttcgaggccctgcacgg 501
|||||||||||||||||| |||||||||
Sbjct: 739665 tgccgtcgccgttcgaggacctgcacgg 739638
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 930 tggggccggtcatgtacgaggcccagctgctgatggacatgctcatgatggt 981
||||||| || |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 739005 tggggcctgtaatgttcgaagcgcagctcatgatggacatgctcatgatggt 738954
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 680393 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 680334
Score = 46.1 bits (23), Expect = 0.049
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcat 906
|||| ||||| ||||||||||||||||||||
Sbjct: 543631 cccgagaagatggagggaaggtgatcatcat 543601
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||||||| | ||| ||||||||||||| ||||| |||||||
Sbjct: 739456 gccatcgtcaaggcgtacccgcacatcaagtgcacggtgctggaccttcc 739407
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 672438 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 672487
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 133 bits (67), Expect = 3e-028
Identities = 187/227 (82%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 11331661 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 11331602
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 11331601 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 11331542
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 11331541 ggcaccgcctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctccca 11331482
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 11331481 ttcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 11331435
Score = 125 bits (63), Expect = 7e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||| ||| ||||||||||||||||| | | ||
Sbjct: 11355309 gacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacg 11355250
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| | ||||||| || ||||| |||||| |||||||||||| | |||
Sbjct: 11355249 tccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggc 11355190
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| || ||||| || | ||||||||||||
Sbjct: 11355189 ggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccg 11355130
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | |||||||||||||||| ||||||||||||||
Sbjct: 11355129 ttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgc 11355083
Score = 107 bits (54), Expect = 2e-020
Identities = 171/210 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||| ||||||| |||||||||| ||||||||||||| ||||| |||||| ||
Sbjct: 11303053 gacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccctctcctacctcacc 11302994
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
|||||| | ||| |||||| || | ||| |||||| |||||||||||| || |||
Sbjct: 11302993 tccatgactctccggtgcgccgtccacctcggcatccccaccgccatccaccgccacggc 11302934
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct: 11302933 ggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctccccacggccaagctcccc 11302874
Query: 245 ttcctcgggcgcgtgatgcggctgctggtc 274
|||||| | ||| | |||||||||||||||
Sbjct: 11302873 ttcctccgccgcctcatgcggctgctggtc 11302844
Score = 103 bits (52), Expect = 2e-019
Identities = 181/224 (80%)
Strand = Plus / Minus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
||||||||| |||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 11550554 gccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtcc 11550495
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggcggg 187
|||| ||| ||||| || |||||| |||||||||| | ||||| ||| |||||
Sbjct: 11550494 atgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggcggc 11550435
Query: 188 tctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttc 247
| ||||| | || ||||| |||||||||||||||| || | | ||||||||| |||
Sbjct: 11550434 gccgccaccgtccctgacctgatggccgcgctgtccctccctgagaacaagctccctttc 11550375
Query: 248 ctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| ||||| ||||||| |||| |||||| || ||||||||||
Sbjct: 11550374 ttccggcgcctgatgcgtgtgctcgtcacggcgcgcgtcttcgc 11550331
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 11494870 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 11494811
Query: 116 tacct 120
|||||
Sbjct: 11494810 tacct 11494806
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 11482291 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 11482347
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 7139016 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 7138957
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 7138956 tacctcacggccatggcgctc 7138936
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 7137818 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 7137759
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 7137758 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 7137715
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 7137679 cccagctgctgatggacatggccatgatggtcaacacca 7137641
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 11354658 gccatcgtcgaggccttcccacacatcaagttcaccgtgct 11354618
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 71 gagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| || |||||||| || |||||||||||||||| ||||
Sbjct: 11439601 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 11439554
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 11329820 cccgcaaagatggagggaaggtgatcatcattga 11329787
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 19031097 ccatggcgctcaagtgcgccgtggagctc 19031069
Score = 50.1 bits (25), Expect = 0.003
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 195 cgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttcctcgggc 254
||||||| ||||| || |||| |||||||| || || ||||||| ||||||||| | |
Sbjct: 11439477 cgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctccgcc 11439418
Query: 255 gcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| | ||||||||||||||| || |||||||||||
Sbjct: 11439417 gcctcatgcggctgctggtccactccggcgtcttcgc 11439381
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 11438979 ccatcgtcgaggccttcccacacgtcaagtgcactgtgctggaccttcc 11438931
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 11331019 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 11330979
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 19030517 ggccttcccggacatcaagtgcaccgtg 19030490
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 474 tgccgtcgccgttcgaggccctgcacgg 501
|||||||||||||||||| |||||||||
Sbjct: 11550145 tgccgtcgccgttcgaggacctgcacgg 11550118
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 930 tggggccggtcatgtacgaggcccagctgctgatggacatgctcatgatggt 981
||||||| || |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 11549485 tggggcctgtaatgttcgaagcgcagctcatgatggacatgctcatgatggt 11549434
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 11490873 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 11490814
Score = 46.1 bits (23), Expect = 0.049
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcat 906
|||| ||||| ||||||||||||||||||||
Sbjct: 11354111 cccgagaagatggagggaaggtgatcatcat 11354081
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||||||| | ||| ||||||||||||| ||||| |||||||
Sbjct: 11549936 gccatcgtcaaggcgtacccgcacatcaagtgcacggtgctggaccttcc 11549887
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 11482918 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 11482967
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
map C53961S, complete sequence
Length = 175121
Score = 133 bits (67), Expect = 3e-028
Identities = 187/227 (82%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 118019 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 117960
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 117959 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 117900
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 117899 ggcaccgcctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctccca 117840
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 117839 ttcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 117793
Score = 125 bits (63), Expect = 7e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||| ||| ||||||||||||||||| | | ||
Sbjct: 141667 gacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacg 141608
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| | ||||||| || ||||| |||||| |||||||||||| | |||
Sbjct: 141607 tccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggc 141548
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| || ||||| || | ||||||||||||
Sbjct: 141547 ggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccg 141488
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | |||||||||||||||| ||||||||||||||
Sbjct: 141487 ttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgc 141441
Score = 107 bits (54), Expect = 2e-020
Identities = 171/210 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||| ||||||| |||||||||| ||||||||||||| ||||| |||||| ||
Sbjct: 89411 gacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccctctcctacctcacc 89352
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
|||||| | ||| |||||| || | ||| |||||| |||||||||||| || |||
Sbjct: 89351 tccatgactctccggtgcgccgtccacctcggcatccccaccgccatccaccgccacggc 89292
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct: 89291 ggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctccccacggccaagctcccc 89232
Query: 245 ttcctcgggcgcgtgatgcggctgctggtc 274
|||||| | ||| | |||||||||||||||
Sbjct: 89231 ttcctccgccgcctcatgcggctgctggtc 89202
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 141016 gccatcgtcgaggccttcccacacatcaagttcaccgtgct 140976
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 116178 cccgcaaagatggagggaaggtgatcatcattga 116145
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 117377 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 117337
Score = 46.1 bits (23), Expect = 0.049
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcat 906
|||| ||||| ||||||||||||||||||||
Sbjct: 140469 cccgagaagatggagggaaggtgatcatcat 140439
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 133 bits (67), Expect = 3e-028
Identities = 187/227 (82%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 11410850 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 11410791
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 11410790 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 11410731
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 11410730 ggcaccgcctcgctgcccgaccttgtcgccgccctgtccctcccgcccgccaagctccca 11410671
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 11410670 ttcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 11410624
Score = 125 bits (63), Expect = 7e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||| ||| ||||||||||||||||| | | ||
Sbjct: 11434498 gacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacg 11434439
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| | ||||||| || ||||| |||||| |||||||||||| | |||
Sbjct: 11434438 tccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggc 11434379
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| || ||||| || | ||||||||||||
Sbjct: 11434378 ggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccg 11434319
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | |||||||||||||||| ||||||||||||||
Sbjct: 11434318 ttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgc 11434272
Score = 107 bits (54), Expect = 2e-020
Identities = 171/210 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||| ||||||| |||||||||| ||||||||||||| ||||| |||||| ||
Sbjct: 11382242 gacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccctctcctacctcacc 11382183
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
|||||| | ||| |||||| || | ||| |||||| |||||||||||| || |||
Sbjct: 11382182 tccatgactctccggtgcgccgtccacctcggcatccccaccgccatccaccgccacggc 11382123
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct: 11382122 ggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctccccacggccaagctcccc 11382063
Query: 245 ttcctcgggcgcgtgatgcggctgctggtc 274
|||||| | ||| | |||||||||||||||
Sbjct: 11382062 ttcctccgccgcctcatgcggctgctggtc 11382033
Score = 103 bits (52), Expect = 2e-019
Identities = 181/224 (80%)
Strand = Plus / Minus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
||||||||| |||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 11629743 gccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtcc 11629684
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggcggg 187
|||| ||| ||||| || |||||| |||||||||| | ||||| ||| |||||
Sbjct: 11629683 atgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggcggc 11629624
Query: 188 tctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttc 247
| ||||| | || ||||| |||||||||||||||| || | | ||||||||| |||
Sbjct: 11629623 gccgccaccgtccctgacctgatggccgcgctgtccctccctgagaacaagctccctttc 11629564
Query: 248 ctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| ||||| ||||||| |||| |||||| || ||||||||||
Sbjct: 11629563 ttccggcgcctgatgcgtgtgctcgtcacggcgcgcgtcttcgc 11629520
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 11574059 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 11574000
Query: 116 tacct 120
|||||
Sbjct: 11573999 tacct 11573995
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 11561480 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 11561536
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 7204987 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 7204928
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 7204927 tacctcacggccatggcgctc 7204907
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 7203789 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 7203730
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 7203729 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 7203686
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 7203650 cccagctgctgatggacatggccatgatggtcaacacca 7203612
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 11433847 gccatcgtcgaggccttcccacacatcaagttcaccgtgct 11433807
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 71 gagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| || |||||||| || |||||||||||||||| ||||
Sbjct: 11518790 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 11518743
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 11409009 cccgcaaagatggagggaaggtgatcatcattga 11408976
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 19189746 ccatggcgctcaagtgcgccgtggagctc 19189718
Score = 50.1 bits (25), Expect = 0.003
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 195 cgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttcctcgggc 254
||||||| ||||| || |||| |||||||| || || ||||||| ||||||||| | |
Sbjct: 11518666 cgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctccgcc 11518607
Query: 255 gcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| | ||||||||||||||| || |||||||||||
Sbjct: 11518606 gcctcatgcggctgctggtccactccggcgtcttcgc 11518570
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 11518168 ccatcgtcgaggccttcccacacgtcaagtgcactgtgctggaccttcc 11518120
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 11410208 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 11410168
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 19189166 ggccttcccggacatcaagtgcaccgtg 19189139
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 474 tgccgtcgccgttcgaggccctgcacgg 501
|||||||||||||||||| |||||||||
Sbjct: 11629334 tgccgtcgccgttcgaggacctgcacgg 11629307
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 930 tggggccggtcatgtacgaggcccagctgctgatggacatgctcatgatggt 981
||||||| || |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 11628674 tggggcctgtaatgttcgaagcgcagctcatgatggacatgctcatgatggt 11628623
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 11570062 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 11570003
Score = 46.1 bits (23), Expect = 0.049
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcat 906
|||| ||||| ||||||||||||||||||||
Sbjct: 11433300 cccgagaagatggagggaaggtgatcatcat 11433270
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||||||| | ||| ||||||||||||| ||||| |||||||
Sbjct: 11629125 gccatcgtcaaggcgtacccgcacatcaagtgcacggtgctggaccttcc 11629076
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 11562107 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 11562156
>gb|AACV01022906.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022906, whole
genome shotgun sequence
Length = 51114
Score = 125 bits (63), Expect = 7e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||| ||| ||||||||||||||||| | | ||
Sbjct: 16118 gacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacg 16059
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| | ||||||| || ||||| |||||| |||||||||||| | |||
Sbjct: 16058 tccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggc 15999
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| || ||||| || | ||||||||||||
Sbjct: 15998 ggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccg 15939
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | |||||||||||||||| ||||||||||||||
Sbjct: 15938 ttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgc 15892
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 15467 gccatcgtcgaggccttcccacacatcaagttcaccgtgct 15427
Score = 46.1 bits (23), Expect = 0.049
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcat 906
|||| ||||| ||||||||||||||||||||
Sbjct: 14920 cccgagaagatggagggaaggtgatcatcat 14890
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 125 bits (63), Expect = 7e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||| ||| ||||||||||||||||| | | ||
Sbjct: 2509373 gacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacg 2509314
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| | ||||||| || ||||| |||||| |||||||||||| | |||
Sbjct: 2509313 tccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggc 2509254
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| || ||||| || | ||||||||||||
Sbjct: 2509253 ggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccg 2509194
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | |||||||||||||||| ||||||||||||||
Sbjct: 2509193 ttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgc 2509147
Score = 119 bits (60), Expect = 4e-024
Identities = 187/228 (82%), Gaps = 1/228 (0%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 2488961 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 2488902
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 2488901 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 2488842
Query: 185 gggtctgccacgct-gccggacctcgtggccgcgctgtccctgccagcggccaagctccc 243
|| | ||| |||| ||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 2488841 ggcaccgcctcgctggcccgaccttgtcgccgccctgtccctcccgcccgccaagctccc 2488782
Query: 244 gttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 2488781 attcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 2488734
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 2645372 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 2645313
Query: 116 tacct 120
|||||
Sbjct: 2645312 tacct 2645308
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 2632144 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 2632200
Score = 85.7 bits (43), Expect = 6e-014
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||| ||||||| |||||||||| ||||||||||||| ||||| |||||| ||
Sbjct: 2460674 gacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccctctcctacctcacc 2460615
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
|||||| | ||| |||||| || | ||| |||||| |||||||||||| || |||
Sbjct: 2460614 tccatgactctccggtgcgccgtccacctcggcatccccaccgccatccaccgccacggc 2460555
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctccc 243
|| | ||| ||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct: 2460554 ggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctccccacggccaagctccc 2460496
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 2508722 gccatcgtcgaggccttcccacacatcaagttcaccgtgct 2508682
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 71 gagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| || |||||||| || |||||||||||||||| ||||
Sbjct: 2588880 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 2588833
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 2487118 cccgcaaagatggagggaaggtgatcatcattga 2487085
Score = 50.1 bits (25), Expect = 0.003
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 195 cgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttcctcgggc 254
||||||| ||||| || |||| |||||||| || || ||||||| ||||||||| | |
Sbjct: 2588756 cgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctccgcc 2588697
Query: 255 gcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| | ||||||||||||||| || |||||||||||
Sbjct: 2588696 gcctcatgcggctgctggtccactccggcgtcttcgc 2588660
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 2588258 ccatcgtcgaggccttcccacacgtcaagtgcactgtgctggaccttcc 2588210
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 2488317 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 2488277
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 474 tgccgtcgccgttcgaggccctgcacgg 501
|||||||||||||||||| |||||||||
Sbjct: 2704013 tgccgtcgccgttcgaggacctgcacgg 2703986
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 930 tggggccggtcatgtacgaggcccagctgctgatggacatgctcatgatggt 981
||||||| || |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 2703353 tggggcctgtaatgttcgaagcgcagctcatgatggacatgctcatgatggt 2703302
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 2641375 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 2641316
Score = 46.1 bits (23), Expect = 0.049
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcat 906
|||| ||||| ||||||||||||||||||||
Sbjct: 2508175 cccgagaagatggagggaaggtgatcatcat 2508145
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||||||| | ||| ||||||||||||| ||||| |||||||
Sbjct: 2703804 gccatcgtcaaggcgtacccgcacatcaagtgcacggtgctggaccttcc 2703755
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 2632771 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 2632820
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 125 bits (63), Expect = 7e-026
Identities = 186/227 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||| ||| ||||||||||||||||| | | ||
Sbjct: 10364417 gacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtcacg 10364358
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| | ||||||| || ||||| |||||| |||||||||||| | |||
Sbjct: 10364357 tccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgccggc 10364298
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccg 244
|| | ||| ||||||| ||||| || ||||| || ||||| || | ||||||||||||
Sbjct: 10364297 ggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctcccg 10364238
Query: 245 ttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | |||||||||||||||| ||||||||||||||
Sbjct: 10364237 ttcctccgccgcctcatgcggctgctggtcaactcgggcgtcttcgc 10364191
Score = 119 bits (60), Expect = 4e-024
Identities = 187/228 (82%), Gaps = 1/228 (0%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 10344005 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 10343946
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 10343945 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 10343886
Query: 185 gggtctgccacgct-gccggacctcgtggccgcgctgtccctgccagcggccaagctccc 243
|| | ||| |||| ||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 10343885 ggcaccgcctcgctggcccgaccttgtcgccgccctgtccctcccgcccgccaagctccc 10343826
Query: 244 gttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 10343825 attcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 10343778
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 10500416 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 10500357
Query: 116 tacct 120
|||||
Sbjct: 10500356 tacct 10500352
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 10487188 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 10487244
Score = 85.7 bits (43), Expect = 6e-014
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||| ||||||| |||||||||| ||||||||||||| ||||| |||||| ||
Sbjct: 10315718 gacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccctctcctacctcacc 10315659
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
|||||| | ||| |||||| || | ||| |||||| |||||||||||| || |||
Sbjct: 10315658 tccatgactctccggtgcgccgtccacctcggcatccccaccgccatccaccgccacggc 10315599
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctccc 243
|| | ||| ||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct: 10315598 ggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctccccacggccaagctccc 10315540
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 6713692 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 6713633
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 6713632 tacctcacggccatggcgctc 6713612
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 6712519 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 6712460
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 6712459 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 6712416
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 6712380 cccagctgctgatggacatggccatgatggtcaacacca 6712342
Score = 58.0 bits (29), Expect = 1e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 10363766 gccatcgtcgaggccttcccacacatcaagttcaccgtgct 10363726
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 71 gagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| || |||||||| || |||||||||||||||| ||||
Sbjct: 10443924 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 10443877
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 10342162 cccgcaaagatggagggaaggtgatcatcattga 10342129
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 15909104 ccatggcgctcaagtgcgccgtggagctc 15909076
Score = 50.1 bits (25), Expect = 0.003
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 195 cgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttcctcgggc 254
||||||| ||||| || |||| |||||||| || || ||||||| ||||||||| | |
Sbjct: 10443800 cgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctccgcc 10443741
Query: 255 gcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| | ||||||||||||||| || |||||||||||
Sbjct: 10443740 gcctcatgcggctgctggtccactccggcgtcttcgc 10443704
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 10443302 ccatcgtcgaggccttcccacacgtcaagtgcactgtgctggaccttcc 10443254
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 10343361 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 10343321
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 15908523 ggccttcccggacatcaagtgcaccgtg 15908496
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 474 tgccgtcgccgttcgaggccctgcacgg 501
|||||||||||||||||| |||||||||
Sbjct: 10559057 tgccgtcgccgttcgaggacctgcacgg 10559030
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 930 tggggccggtcatgtacgaggcccagctgctgatggacatgctcatgatggt 981
||||||| || |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 10558397 tggggcctgtaatgttcgaagcgcagctcatgatggacatgctcatgatggt 10558346
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 10496419 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 10496360
Score = 46.1 bits (23), Expect = 0.049
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcat 906
|||| ||||| ||||||||||||||||||||
Sbjct: 10363219 cccgagaagatggagggaaggtgatcatcat 10363189
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||||||| | ||| ||||||||||||| ||||| |||||||
Sbjct: 10558848 gccatcgtcaaggcgtacccgcacatcaagtgcacggtgctggaccttcc 10558799
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 10487815 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 10487864
>gb|AACV01022905.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022905, whole
genome shotgun sequence
Length = 10752
Score = 119 bits (60), Expect = 4e-024
Identities = 187/228 (82%), Gaps = 1/228 (0%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||||||||||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct: 6508 gacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtcacg 6449
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
||||||||| || ||||||| || ||||| |||||| |||||||||||| | ||
Sbjct: 6448 tccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgctggt 6389
Query: 185 gggtctgccacgct-gccggacctcgtggccgcgctgtccctgccagcggccaagctccc 243
|| | ||| |||| ||| ||||| || ||||| |||||||| || | |||||||||||
Sbjct: 6388 ggcaccgcctcgctggcccgaccttgtcgccgccctgtccctcccgcccgccaagctccc 6329
Query: 244 gttcctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|||||| | ||| | ||||||||||||||| ||||||||||||||
Sbjct: 6328 attcctccgccgcctcatgcggctgctggtccactcgggcgtcttcgc 6281
Score = 52.0 bits (26), Expect = 8e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 876 cccgcgaagaaggagggaaggtgatcatcattga 909
||||| |||| |||||||||||||||||||||||
Sbjct: 4665 cccgcaaagatggagggaaggtgatcatcattga 4632
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 5864 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 5824
>gb|AU223398.1|AU223398 AU223398 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6265, mRNA sequence
Length = 379
Score = 103 bits (52), Expect = 2e-019
Identities = 181/224 (80%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
||||||||| |||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 90 gccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtcc 149
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggcggg 187
|||| ||| ||||| || |||||| |||||||||| | ||||| ||| |||||
Sbjct: 150 atgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggcggc 209
Query: 188 tctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttc 247
| ||||| | || ||||| |||||||||||||||| || | | ||||||||| |||
Sbjct: 210 gccgccaccgtccctgacctgatggccgcgctgtccctccctgagaacaagctccctttc 269
Query: 248 ctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| ||||| ||||||| |||| |||||| || ||||||||||
Sbjct: 270 ttccggcgcctgatgcgtgtgctcgtcacggcgcgcgtcttcgc 313
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0005P21, complete sequence
Length = 147381
Score = 103 bits (52), Expect = 2e-019
Identities = 181/224 (80%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
||||||||| |||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 63234 gccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtcc 63293
Query: 128 atggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggcggg 187
|||| ||| ||||| || |||||| |||||||||| | ||||| ||| |||||
Sbjct: 63294 atgggcctccgctgcgccgtcgagctcggcatcccgaccacgatccatggcctcggcggc 63353
Query: 188 tctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttc 247
| ||||| | || ||||| |||||||||||||||| || | | ||||||||| |||
Sbjct: 63354 gccgccaccgtccctgacctgatggccgcgctgtccctccctgagaacaagctccctttc 63413
Query: 248 ctcgggcgcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| ||||| ||||||| |||| |||||| || ||||||||||
Sbjct: 63414 ttccggcgcctgatgcgtgtgctcgtcacggcgcgcgtcttcgc 63457
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 118918 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 118977
Query: 116 tacct 120
|||||
Sbjct: 118978 tacct 118982
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 131497 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 131441
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 122915 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 122974
Score = 48.1 bits (24), Expect = 0.012
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 930 tggggccggtcatgtacgaggcccagctgctgatggacatgctcatgatggt 981
||||||| || |||| ||| || ||||| ||||||||||||||||||||||
Sbjct: 64303 tggggcctgtaatgttcgaagcgcagctcatgatggacatgctcatgatggt 64354
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 474 tgccgtcgccgttcgaggccctgcacgg 501
|||||||||||||||||| |||||||||
Sbjct: 63643 tgccgtcgccgttcgaggacctgcacgg 63670
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 130870 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 130821
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||||||| | ||| ||||||||||||| ||||| |||||||
Sbjct: 63852 gccatcgtcaaggcgtacccgcacatcaagtgcacggtgctggaccttcc 63901
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
insert sequence
Length = 1264
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 83 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 142
Query: 116 tacct 120
|||||
Sbjct: 143 tacct 147
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 797 atgctcaagctcgtcctgcacttctggagcgacgacgactgcgtcaagatcctggagctg 856
||||||||||| || ||||| ||||||||| || || ||||| |||||| || | |
Sbjct: 854 atgctcaagcttgtattgcaccactggagcgatgatgattgcgtgaagatcttgactcag 913
Query: 857 tgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 914 tgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 972
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
insert sequence
Length = 1362
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 78 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 137
Query: 116 tacct 120
|||||
Sbjct: 138 tacct 142
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 797 atgctcaagctcgtcctgcacttctggagcgacgacgactgcgtcaagatcctggagctg 856
||||||||||| || ||||| ||||||||| || || ||||| |||||| || | |
Sbjct: 849 atgctcaagcttgtattgcaccactggagcgatgatgattgcgtgaagatcttgactcag 908
Query: 857 tgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 909 tgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 967
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
Length = 128418
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 4667 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 4726
Query: 116 tacct 120
|||||
Sbjct: 4727 tacct 4731
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 17246 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 17190
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 71 gagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| || |||||||| || |||||||||||||||| ||||
Sbjct: 59936 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 59983
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 60558 ccatcgtcgaggccttcccacacgtcaagtgcactgtgctggaccttcc 60606
Score = 50.1 bits (25), Expect = 0.003
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 195 cgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttcctcgggc 254
||||||| ||||| || |||| |||||||| || || ||||||| ||||||||| | |
Sbjct: 60060 cgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctccgcc 60119
Query: 255 gcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| | ||||||||||||||| || |||||||||||
Sbjct: 60120 gcctcatgcggctgctggtccactccggcgtcttcgc 60156
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 8664 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 8723
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 16619 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 16570
>gb|AACV01022918.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022918, whole
genome shotgun sequence
Length = 11538
Score = 97.6 bits (49), Expect = 1e-017
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 2193 gttcccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctac 2252
Query: 116 tacct 120
|||||
Sbjct: 2253 tacct 2257
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 6190 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 6249
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full
insert sequence
Length = 1300
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 118 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 174
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 745 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 794
>gb|AACV01022917.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022917, whole
genome shotgun sequence
Length = 4741
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 80 caggcgcaggccgacctgtggcgccacagcctctactacctgacatccatggcgctc 136
|||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 3833 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctc 3777
Score = 44.1 bits (22), Expect = 0.19
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||||| ||| ||||| | ||||||||||||||||| |||||||
Sbjct: 3206 gccatcgtcagggcattcccgggaatcaagtgcaccgtgctggaccttcc 3157
>gb|C25075.1|C25075 C25075 Rice shoot Oryza sativa (japonica cultivar-group) cDNA clone
S5164_1A, mRNA sequence
Length = 282
Score = 87.7 bits (44), Expect = 1e-014
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 68 gccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgacatcc 127
||||||||| |||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 83 gccgagctgatgcaagcacaggccgacctgtggcgccacagcctctactacctcacgtcc 142
Query: 128 atgg 131
||||
Sbjct: 143 atgg 146
>gb|AACV01022903.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022903, whole
genome shotgun sequence
Length = 18552
Score = 85.7 bits (43), Expect = 6e-014
Identities = 145/179 (81%)
Strand = Plus / Minus
Query: 65 gacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactacctgaca 124
|||| |||| ||||||| |||||||||| ||||||||||||| ||||| |||||| ||
Sbjct: 11005 gacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccctctcctacctcacc 10946
Query: 125 tccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatccacaacctaggc 184
|||||| | ||| |||||| || | ||| |||||| |||||||||||| || |||
Sbjct: 10945 tccatgactctccggtgcgccgtccacctcggcatccccaccgccatccaccgccacggc 10886
Query: 185 gggtctgccacgctgccggacctcgtggccgcgctgtccctgccagcggccaagctccc 243
|| | ||| ||||||| |||||||| ||||||||||||| || |||||||||||||
Sbjct: 10885 ggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctccccacggccaagctccc 10827
>ref|NT_107144.1| Oryza sativa (japonica cultivar-group)
Length = 965832
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 922294 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 922235
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 922234 tacctcacggccatggcgctc 922214
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 921096 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 921037
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 921036 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 920993
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 920957 cccagctgctgatggacatggccatgatggtcaacacca 920919
>gb|AACV01022672.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022672,
whole genome shotgun sequence
Length = 951
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 550 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 609
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 610 tacctcacggccatggcgctc 630
>gb|CH401260.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000097
genomic scaffold, whole genome shotgun sequence
Length = 385661
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 329138 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 329079
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 329078 tacctcacggccatggcgctc 329058
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 327965 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 327906
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 327905 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 327862
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 327826 cccagctgctgatggacatggccatgatggtcaacacca 327788
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0097K08 map C827S, complete sequence
Length = 137870
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 43539 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 43598
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 43599 tacctcacggccatggcgctc 43619
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 44737 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 44796
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 44797 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 44840
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 44876 cccagctgctgatggacatggccatgatggtcaacacca 44914
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0026P08 map near C827S, complete sequence
Length = 148676
Score = 81.8 bits (41), Expect = 9e-013
Identities = 71/81 (87%)
Strand = Plus / Minus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| || ||||||||||| |||||||||||| ||| |
Sbjct: 52236 gttcccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcc 52177
Query: 116 tacctgacatccatggcgctc 136
||||| || |||||||||||
Sbjct: 52176 tacctcacggccatggcgctc 52156
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 51038 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 50979
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 50978 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 50935
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 50899 cccagctgctgatggacatggccatgatggtcaacacca 50861
>gb|D42011.1|D42011 RICS5096A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 354
Score = 75.8 bits (38), Expect = 5e-011
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 56 gttcccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctac 115
|||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 68 gttcccactgacgctgagctgctgcaan-gcaggccgatctgtggcgccacagcctctac 126
Query: 116 tacct 120
|||||
Sbjct: 127 tacct 131
>gb|AACV01022671.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022671,
whole genome shotgun sequence
Length = 32089
Score = 63.9 bits (32), Expect = 2e-007
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 812 ctgcacttctggagcgacgacgactgcgtcaagatcctggagctgtgcaggaaggccatc 871
||||| || |||||||| ||||||||||| ||||||||| | ||||| ||| ||||||
Sbjct: 672 ctgcatttttggagcgatgacgactgcgtgaagatcctgtcccagtgcaagaaagccatc 731
Query: 872 ccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
||||| || | || ||||||||||||||| |||| || |||||
Sbjct: 732 ccttcacgaaaggagggagggaaggtgatcgtcatagacatact 775
Score = 61.9 bits (31), Expect = 8e-007
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 951 cccagctgctgatggacatgctcatgatggtcaacacca 989
|||||||||||||||||||| |||||||||||||||||
Sbjct: 811 cccagctgctgatggacatggccatgatggtcaacacca 849
>gb|AACV01022911.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022911,
whole genome shotgun sequence
Length = 3328
Score = 56.0 bits (28), Expect = 5e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 71 gagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 118
||||||||||| || |||||||| || |||||||||||||||| ||||
Sbjct: 904 gagctgctgcaagcacaggccgatctatggcgccacagcctctgctac 951
Score = 50.1 bits (25), Expect = 0.003
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 690 ccatcgtcaaggccttcccagacatcaagtgcaccgtgctcaaccttcc 738
|||||||| ||||||||||| || |||||||||| ||||| |||||||
Sbjct: 1526 ccatcgtcgaggccttcccacacgtcaagtgcactgtgctggaccttcc 1574
Score = 50.1 bits (25), Expect = 0.003
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 195 cgctgccggacctcgtggccgcgctgtccctgccagcggccaagctcccgttcctcgggc 254
||||||| ||||| || |||| |||||||| || || ||||||| ||||||||| | |
Sbjct: 1028 cgctgcccgacctggttaccgctctgtccctcccgccgtccaagctaccgttcctccgcc 1087
Query: 255 gcgtgatgcggctgctggtcacgtcgggcgtcttcgc 291
|| | ||||||||||||||| || |||||||||||
Sbjct: 1088 gcctcatgcggctgctggtccactccggcgtcttcgc 1124
>gb|AU181055.1|AU181055 AU181055 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5839, mRNA sequence
Length = 300
Score = 50.1 bits (25), Expect = 0.003
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgcaccgtgct 729
||||||||| |||| |||||| | |||||||||||||||||
Sbjct: 184 gccatcgtcgaggcgttcccacatatcaagtgcaccgtgct 224
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1634_H04
Length = 151699
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 116185 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 116126
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 116125 gtcgcctcgggcgtcttcgcg 116105
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 40054 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 40113
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 40114 gtcgcctcgggcgtcttcgcg 40134
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0458D06
Length = 166038
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 40689 gccattgtcaaggccttcccacacatcaagtgc 40721
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0462E11
Length = 166115
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 134873 gccattgtcaaggccttcccacacatcaagtgc 134905
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0007D07, complete sequence
Length = 133930
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 33915 ccatggcgctcaagtgcgccgtggagctc 33887
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 33335 ggccttcccggacatcaagtgcaccgtg 33308
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
complete sequence
Length = 148829
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 134295 ccatggcgctcaagtgcgccgtggagctc 134267
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 133715 ggccttcccggacatcaagtgcaccgtg 133688
>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0473C09
Length = 141066
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 1803 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 1744
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 1743 gtcgcctcgggcgtcttcgcg 1723
>ref|NT_107129.1| Oryza sativa (japonica cultivar-group)
Length = 234310
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 134295 ccatggcgctcaagtgcgccgtggagctc 134267
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 133715 ggccttcccggacatcaagtgcaccgtg 133688
>gb|AACV01016104.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016104, whole
genome shotgun sequence
Length = 12834
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 3324 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 3265
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 3264 gtcgcctcgggcgtcttcgcg 3244
>gb|AACV01017371.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017371, whole
genome shotgun sequence
Length = 79719
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 11531 gccattgtcaaggccttcccacacatcaagtgc 11563
>gb|AACV01023315.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023315, whole
genome shotgun sequence
Length = 14110
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 10463 ccatggcgctcaagtgcgccgtggagctc 10491
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 11044 ggccttcccggacatcaagtgcaccgtg 11071
>ref|XM_478005.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1026
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 154 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 213
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 214 gtcgcctcgggcgtcttcgcg 234
>ref|XM_480279.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1116
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 676 gccattgtcaaggccttcccacacatcaagtgc 708
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 3918822 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 3918763
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 3918762 gtcgcctcgggcgtcttcgcg 3918742
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 3842691 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 3842750
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 3842751 gtcgcctcgggcgtcttcgcg 3842771
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 3815102 gccattgtcaaggccttcccacacatcaagtgc 3815134
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 126 ccatggcgctcaagtgcgcggtggagctc 154
||||||||||||||||||| |||||||||
Sbjct: 1744122 ccatggcgctcaagtgcgccgtggagctc 1744094
Score = 48.1 bits (24), Expect = 0.012
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 700 ggccttcccagacatcaagtgcaccgtg 727
||||||||| ||||||||||||||||||
Sbjct: 1743541 ggccttcccggacatcaagtgcaccgtg 1743514
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
scaffold, whole genome shotgun sequence
Length = 5026603
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 3937543 gccattgtcaaggccttcccacacatcaagtgc 3937575
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 2011197 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 2011138
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 2011137 gtcgcctcgggcgtcttcgcg 2011117
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 3937543 gccattgtcaaggccttcccacacatcaagtgc 3937575
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 15410636 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 15410577
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 15410576 gtcgcctcgggcgtcttcgcg 15410556
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Minus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 16295747 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 16295688
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 16295687 gtcgcctcgggcgtcttcgcg 16295667
Score = 50.1 bits (25), Expect = 0.003
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 212 gccgcgctgtccctgccagcggccaagctcccgttcctcgggcgcgtgatgcggctgctg 271
|||||||||||||| | || |||||||||| ||||| | ||||| ||||| |||||
Sbjct: 16219616 gccgcgctgtccctccacccgaccaagctccccttcctgcgccgcgtcatgcgcgtgctg 16219675
Query: 272 gtcacgtcgggcgtcttcgcg 292
||| | |||||||||||||||
Sbjct: 16219676 gtcgcctcgggcgtcttcgcg 16219696
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 50.1 bits (25), Expect = 0.003
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 689 gccatcgtcaaggccttcccagacatcaagtgc 721
||||| ||||||||||||||| |||||||||||
Sbjct: 4047576 gccattgtcaaggccttcccacacatcaagtgc 4047608
>gb|AU097476.1|AU097476 AU097476 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5096, mRNA sequence
Length = 622
Score = 48.1 bits (24), Expect = 0.012
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 856 gtgcaggaaggccatcccttcccgcgaagaaggagggaaggtgatcatcattgagatact 915
|||||| |||||||| || || || || || ||||||||||| |||||||| ||||||||
Sbjct: 25 gtgcagaaaggccattccatcacgagaggagggagggaaggtcatcatcatagagatact 84
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,011,410
Number of Sequences: 438736
Number of extensions: 2011410
Number of successful extensions: 18923
Number of sequences better than 0.5: 55
Number of HSP's better than 0.5 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17815
Number of HSP's gapped (non-prelim): 1081
length of query: 1327
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1306
effective length of database: 2,791,206,460
effective search space: 3645315636760
effective search space used: 3645315636760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)