BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455862.2.1
(712 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU173330.1|AU173330 AU173330 Rice root Oryza sativa (jap... 121 5e-025
gb|AU181176.1|AU181176 AU181176 Rice callus (2001) Oryza sa... 121 5e-025
gb|CF304275.1|CF304275 ABF1--04-I16.g1 ABF3-overexpressing ... 121 5e-025
dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA... 121 5e-025
dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA... 121 5e-025
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 121 5e-025
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 121 5e-025
ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 121 5e-025
ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-... 121 5e-025
dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXR... 121 5e-025
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 121 5e-025
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 121 5e-025
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 121 5e-025
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 121 5e-025
gb|AU184072.1|AU184072 AU184072 Rice root Oryza sativa (jap... 115 3e-023
gb|CB658473.1|CB658473 OSJNEc14I12.r OSJNEc Oryza sativa (j... 113 1e-022
gb|AU032208.1|AU032208 AU032208 Rice root Oryza sativa (jap... 105 3e-020
gb|AU033172.1|AU033172 AU033172 Rice shoot Oryza sativa (ja... 82 5e-013
gb|AU031503.1|AU031503 AU031503 Rice cDNA from immature lea... 62 4e-007
gb|D40451.1|D40451 RICS2440A Rice shoot Oryza sativa (japon... 60 2e-006
gb|C72373.1|C72373 C72373 Rice panicle at flowering stage O... 60 2e-006
gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing ... 60 2e-006
gb|AU097148.1|AU097148 AU097148 Rice shoot Oryza sativa (ja... 58 7e-006
gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japon... 56 3e-005
gb|AU075356.1|AU075356 AU075356 Rice callus Oryza sativa (j... 50 0.002
dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|XM_473788.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
ref|NT_079866.2| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromoso... 50 0.002
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 48 0.007
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|CB683307.1|CB683307 OSJNEf11I08.r OSJNEf Oryza sativa (j... 46 0.026
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 46 0.026
gb|AY873295.1|AY873295 04ET3_373_A_009_083_033A03 Oryza sat... 44 0.10
gb|AU030804.1|AU030804 AU030804 Rice cDNA from immature lea... 44 0.10
gb|AU031504.1|AU031504 AU031504 Rice cDNA from immature lea... 44 0.10
gb|AU174270.1|AU174270 AU174270 Rice shoot Oryza sativa (ja... 44 0.10
gb|AU182333.1|AU182333 AU182333 Rice panicle at flowering s... 44 0.10
gb|AU183251.1|AU183251 AU183251 Rice cDNA from immature lea... 44 0.10
gb|CA754118.1|CA754118 BR040009000_PLATE_F01_6_013.ab1 OA O... 44 0.10
gb|AACV01023821.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AC137064.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|AC133008.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CF326738.1|CF326738 JMT1--06-O06.g1 AtJMT-overexpressing... 42 0.40
dbj|AK062129.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
dbj|AK101381.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
dbj|AK108941.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
dbj|AK111081.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
dbj|AP005737.3| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AK120064.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.40
gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.40
gb|AC105928.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
ref|NT_107238.1| Oryza sativa (japonica cultivar-group) 42 0.40
dbj|AP004328.2| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AP005470.3| Oryza sativa (japonica cultivar-group) geno... 42 0.40
gb|AACV01006082.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01014176.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
gb|AACV01016044.1| Oryza sativa (japonica cultivar-group) c... 42 0.40
ref|NT_107189.1| Oryza sativa (japonica cultivar-group) 42 0.40
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 42 0.40
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 42 0.40
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 42 0.40
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.40
>gb|AU173330.1|AU173330 AU173330 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2204, mRNA sequence
Length = 455
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 65 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 124
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 125 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 184
Query: 339 caactgatt 347
||| |||||
Sbjct: 185 caagtgatt 193
>gb|AU181176.1|AU181176 AU181176 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C10287, mRNA sequence
Length = 433
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 90 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 149
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 150 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 209
Query: 339 caactgatt 347
||| |||||
Sbjct: 210 caagtgatt 218
>gb|CF304275.1|CF304275 ABF1--04-I16.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-I16, mRNA sequence
Length = 588
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 294 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 353
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 354 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 413
Query: 339 caactgatt 347
||| |||||
Sbjct: 414 caagtgatt 422
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 110 tgcacgcgacgctgtgggacggcagctactgggc 143
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full
insert sequence
Length = 1127
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 790 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 849
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 850 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 909
Query: 339 caactgatt 347
||| |||||
Sbjct: 910 caagtgatt 918
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 606 tgcacgcgacgctgtgggacggcagctactgggc 639
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full
insert sequence
Length = 1111
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 795 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 854
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 855 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 914
Query: 339 caactgatt 347
||| |||||
Sbjct: 915 caagtgatt 923
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 611 tgcacgcgacgctgtgggacggcagctactgggc 644
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 62670 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 62729
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 62730 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 62789
Query: 339 caactgatt 347
||| |||||
Sbjct: 62790 caagtgatt 62798
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 62486 tgcacgcgacgctgtgggacggcagctactgggc 62519
>gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002670, whole
genome shotgun sequence
Length = 40539
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 6277 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 6336
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 6337 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 6396
Query: 339 caactgatt 347
||| |||||
Sbjct: 6397 caagtgatt 6405
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 47 acgccacgctgtgggacggcagctactgggc 77
|||| ||||||||||||||||||||||||||
Sbjct: 6096 acgcgacgctgtgggacggcagctactgggc 6126
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1111
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 795 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 854
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 855 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 914
Query: 339 caactgatt 347
||| |||||
Sbjct: 915 caagtgatt 923
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 611 tgcacgcgacgctgtgggacggcagctactgggc 644
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA
Length = 1127
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 790 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 849
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 850 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 909
Query: 339 caactgatt 347
||| |||||
Sbjct: 910 caagtgatt 918
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 606 tgcacgcgacgctgtgggacggcagctactgggc 639
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan
endotransglycosylase-related protein 5, complete cds
Length = 1280
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 786 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 845
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 846 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 905
Query: 339 caactgatt 347
||| |||||
Sbjct: 906 caagtgatt 914
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 602 tgcacgcgacgctgtgggacggcagctactgggc 635
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 8090087 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 8090146
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 8090147 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 8090206
Query: 339 caactgatt 347
||| |||||
Sbjct: 8090207 caagtgatt 8090215
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 8089903 tgcacgcgacgctgtgggacggcagctactgggc 8089936
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 10684918 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 10684859
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 10684858 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 10684799
Query: 339 caactgatt 347
||| |||||
Sbjct: 10684798 caagtgatt 10684790
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 47 acgccacgctgtgggacggcagctactgggc 77
|||| ||||||||||||||||||||||||||
Sbjct: 10685099 acgcgacgctgtgggacggcagctactgggc 10685069
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Minus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 35886639 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 35886580
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 35886579 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 35886520
Query: 339 caactgatt 347
||| |||||
Sbjct: 35886519 caagtgatt 35886511
Score = 54.0 bits (27), Expect = 1e-004
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 47 acgccacgctgtgggacggcagctactgggc 77
|||| ||||||||||||||||||||||||||
Sbjct: 35886820 acgcgacgctgtgggacggcagctactgggc 35886790
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 121 bits (61), Expect = 5e-025
Identities = 112/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 8322561 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 8322620
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 8322621 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 8322680
Query: 339 caactgatt 347
||| |||||
Sbjct: 8322681 caagtgatt 8322689
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 8322377 tgcacgcgacgctgtgggacggcagctactgggc 8322410
>gb|AU184072.1|AU184072 AU184072 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0883, mRNA sequence
Length = 412
Score = 115 bits (58), Expect = 3e-023
Identities = 111/129 (86%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| |||| |||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 69 ccgcgagctngacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 128
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 129 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 188
Query: 339 caactgatt 347
||| |||||
Sbjct: 189 caagtgatt 197
>gb|CB658473.1|CB658473 OSJNEc14I12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14I12 3', mRNA sequence
Length = 595
Score = 113 bits (57), Expect = 1e-022
Identities = 111/129 (86%)
Strand = Plus / Minus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || || ||||||
Sbjct: 324 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaagtacatgtc 265
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |||
Sbjct: 264 ctacaactactgcgccgacggctggcgcttcccccagggcttccccgccgagtgctaccg 205
Query: 339 caactgatt 347
||| |||||
Sbjct: 204 caagtgatt 196
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 52 acgctgtgggacggcagctactgggc 77
||||||||||||||||| ||||||||
Sbjct: 500 acgctgtgggacggcagttactgggc 475
>gb|AU032208.1|AU032208 AU032208 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3694_8Z, mRNA sequence
Length = 560
Score = 105 bits (53), Expect = 3e-020
Identities = 111/129 (86%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 171 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgcaactacatgtc 230
Query: 279 ctacaactactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcccg 338
|||||||||||||| |||||| ||||| ||||| |||||||||||||||||||||| |||
Sbjct: 231 ctacaactactgcgccgacgg-tggcgcttcccccagggcttccccgccgagtgctaccg 289
Query: 339 caactgatt 347
||| |||||
Sbjct: 290 caagtgatt 298
>gb|AU033172.1|AU033172 AU033172 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4342_6Z, mRNA sequence
Length = 342
Score = 81.8 bits (41), Expect = 5e-013
Identities = 88/103 (85%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 244 ggcaccgtcgcctgggccaggcagaactacatgcactacaactactgcgacgacggctgg 303
||||||||| | |||||| || ||||||||| |||||||||||||| |||||| |||
Sbjct: 52 ggcaccgtcncgtgggccgagcgcaactacatgtcctacaactactgcgccgacgg-tgg 110
Query: 304 cgattcccgcagggcttccccgccgagtgctcccgcaactgat 346
|| ||||| |||||||||||||||||||| | |||||| ||||
Sbjct: 111 cgcttcccccagggcttccccgccgagtgntaccgcaagtgat 153
>gb|AU031503.1|AU031503 AU031503 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61752_1A, mRNA sequence
Length = 627
Score = 61.9 bits (31), Expect = 4e-007
Identities = 95/111 (85%), Gaps = 4/111 (3%)
Strand = Plus / Plus
Query: 227 tcgacgccgccgagtggggcaccgtcgcctgggccaggcagaact-acatgcactacaac 285
|||||| |||||||| || ||||||||| |||||| || |||| ||||| |||||||
Sbjct: 297 tcgacggcgccgagtcgg-caccgtcgcgtgggccgagcgcaacttacatgtcctacaac 355
Query: 286 tactgcgacgacggct-ggcgattcccgca-gggcttccccgccgagtgct 334
||||||| |||||||| |||| ||||| || ||||||||||||||||||||
Sbjct: 356 tactgcgccgacggctgggcgcttcccccaggggcttccccgccgagtgct 406
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 104 tgcacgcgacgctgtgggacggcagctactgggc 137
>gb|D40451.1|D40451 RICS2440A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 392
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 102 tgcacgcgacgctgtgggacggcagctactgggc 135
Score = 54.0 bits (27), Expect = 1e-004
Identities = 87/106 (82%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 219 ccgccagctcgacgccgccgagtggggcaccgtcgcctgggccaggcagaactacatgca 278
|||| ||||||||| ||||||| ||||||||||| |||||| || |||||||||
Sbjct: 286 ccgcgagctcgacggcgccgagctcggcaccgtcgcgtgggccgagcgnaactacatgtc 345
Query: 279 ctacaactac-tgcgacgacggctggcgattcccgcagggcttccc 323
|||||||||| |||| |||||| ||||| || || ||||| |||||
Sbjct: 346 ctacaactacttgcggcgacggttggcggtttccccagggtttccc 391
>gb|C72373.1|C72373 C72373 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1510_1A, mRNA sequence
Length = 244
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 121 tgcacgcgacgctgtgggacggcagctactgggc 154
>gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-F05, mRNA sequence
Length = 497
Score = 60.0 bits (30), Expect = 2e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 44 tgcacgccacgctgtgggacggcagctactgggc 77
||||||| ||||||||||||||||||||||||||
Sbjct: 352 tgcacgcgacgctgtgggacggcagctactgggc 385
>gb|AU097148.1|AU097148 AU097148 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2440, mRNA sequence
Length = 313
Score = 58.0 bits (29), Expect = 7e-006
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 268 aactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgcc 327
||||||||| |||||||||||||| |||||| ||||| ||||| || ||||||||||||
Sbjct: 30 aactacatgtcctacaactactgcgccgacgg-tggcgcttccccca-ggcttccccgcc 87
Query: 328 gagtg 332
|||||
Sbjct: 88 gagtg 92
>gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 371
Score = 56.0 bits (28), Expect = 3e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 42 ggtgcacgccacgctgtgggacggcagctactgggc 77
||||||||| ||| ||||||||||||||||||||||
Sbjct: 165 ggtgcacgcgacgatgtgggacggcagctactgggc 200
>gb|AU075356.1|AU075356 AU075356 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C11264_12Z, mRNA sequence
Length = 636
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 339 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 391
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full
insert sequence
Length = 1109
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 851 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 903
>gb|AACV01010435.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010435, whole
genome shotgun sequence
Length = 5289
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 5091 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 5143
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 822
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 761 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 813
>ref|NT_079866.2| Oryza sativa (japonica cultivar-group)
Length = 1075015
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 412949 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 412897
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 8235038 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 8234986
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 27379137 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 27379085
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02,
complete sequence
Length = 166804
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 149816 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 149764
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 284 actactgcgacgacggctggcgattcccgcagggcttccccgccgagtgctcc 336
||||||||| |||| || ||| ||||||||||||||||| |||||||||||
Sbjct: 30516439 actactgcgccgacagcaagcggttcccgcagggcttcccgcccgagtgctcc 30516387
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full
insert sequence
Length = 1253
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 114 cgcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| | | |||||||||||||| | |||||||||||||||
Sbjct: 724 cgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctgcgt 771
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 956 ttcccccagggcgtccccgccgagtgctcc 985
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 114 cgcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| | | |||||||||||||| | |||||||||||||||
Sbjct: 6238818 cgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctgcgt 6238771
Score = 46.1 bits (23), Expect = 0.026
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 267 gaactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgc 326
|||||||||| |||| ||||||||| |||| | |||||||||||| | ||||||||
Sbjct: 6220992 gaactacatggcctacgactactgcgccgacaggaagcgattcccgcaccgtttccccgc 6221051
Query: 327 cgagtgc 333
|||||||
Sbjct: 6221052 cgagtgc 6221058
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 6238586 ttcccccagggcgtccccgccgagtgctcc 6238557
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 114 cgcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| | | |||||||||||||| | |||||||||||||||
Sbjct: 81108 cgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctgcgt 81061
Score = 46.1 bits (23), Expect = 0.026
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 267 gaactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgc 326
|||||||||| |||| ||||||||| |||| | |||||||||||| | ||||||||
Sbjct: 63282 gaactacatggcctacgactactgcgccgacaggaagcgattcccgcaccgtttccccgc 63341
Query: 327 cgagtgc 333
|||||||
Sbjct: 63342 cgagtgc 63348
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 80876 ttcccccagggcgtccccgccgagtgctcc 80847
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 114 cgcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| | | |||||||||||||| | |||||||||||||||
Sbjct: 22997 cgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctgcgt 23044
Score = 46.1 bits (23), Expect = 0.026
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 267 gaactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgc 326
|||||||||| |||| ||||||||| |||| | |||||||||||| | ||||||||
Sbjct: 40826 gaactacatggcctacgactactgcgccgacaggaagcgattcccgcaccgtttccccgc 40767
Query: 327 cgagtgc 333
|||||||
Sbjct: 40766 cgagtgc 40760
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 23229 ttcccccagggcgtccccgccgagtgctcc 23258
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 114 cgcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| | | |||||||||||||| | |||||||||||||||
Sbjct: 10151654 cgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctgcgt 10151607
Score = 46.1 bits (23), Expect = 0.026
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 267 gaactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgc 326
|||||||||| |||| ||||||||| |||| | |||||||||||| | ||||||||
Sbjct: 10133825 gaactacatggcctacgactactgcgccgacaggaagcgattcccgcaccgtttccccgc 10133884
Query: 327 cgagtgc 333
|||||||
Sbjct: 10133885 cgagtgc 10133891
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 10151422 ttcccccagggcgtccccgccgagtgctcc 10151393
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 218 gccgccagctcgacgccgccg 238
|||||||||||||||||||||
Sbjct: 531320 gccgccagctcgacgccgccg 531300
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 114 cgcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| | | |||||||||||||| | |||||||||||||||
Sbjct: 27850391 cgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctgcgt 27850344
Score = 46.1 bits (23), Expect = 0.026
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 267 gaactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgc 326
|||||||||| |||| ||||||||| |||| | |||||||||||| | ||||||||
Sbjct: 27832562 gaactacatggcctacgactactgcgccgacaggaagcgattcccgcaccgtttccccgc 27832621
Query: 327 cgagtgc 333
|||||||
Sbjct: 27832622 cgagtgc 27832628
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 27850159 ttcccccagggcgtccccgccgagtgctcc 27850130
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 218 gccgccagctcgacgccgccg 238
|||||||||||||||||||||
Sbjct: 18230057 gccgccagctcgacgccgccg 18230037
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 114 cgcgcccttcgccgtctcctaccgcggctactccgccgacgcctgcgt 161
|||||||||| | | |||||||||||||| | |||||||||||||||
Sbjct: 28773333 cgcgcccttctcggcctcctaccgcggcttccgcgccgacgcctgcgt 28773286
Score = 46.1 bits (23), Expect = 0.026
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 267 gaactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgc 326
|||||||||| |||| ||||||||| |||| | |||||||||||| | ||||||||
Sbjct: 28755507 gaactacatggcctacgactactgcgccgacaggaagcgattcccgcaccgtttccccgc 28755566
Query: 327 cgagtgc 333
|||||||
Sbjct: 28755567 cgagtgc 28755573
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 28773101 ttcccccagggcgtccccgccgagtgctcc 28773072
Score = 42.1 bits (21), Expect = 0.40
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 218 gccgccagctcgacgccgccg 238
|||||||||||||||||||||
Sbjct: 19098300 gccgccagctcgacgccgccg 19098280
>gb|CB683307.1|CB683307 OSJNEf11I08.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11I08 3', mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.026
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 185 tctcctgccccgccggcaccgac 207
|||||||||||||||||||||||
Sbjct: 222 tctcctgccccgccggcaccgac 200
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 46.1 bits (23), Expect = 0.026
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 267 gaactacatgcactacaactactgcgacgacggctggcgattcccgcagggcttccccgc 326
|||||||||| |||| ||||||||| |||| | |||||||||||| | ||||||||
Sbjct: 156073 gaactacatggcctacgactactgcgccgacaggaagcgattcccgcaccgtttccccgc 156132
Query: 327 cgagtgc 333
|||||||
Sbjct: 156133 cgagtgc 156139
>gb|AY873295.1|AY873295 04ET3_373_A_009_083_033A03 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
04ET3_373_A_009_083_033A03, DNA sequence
Length = 400
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 599 tctttctctctgttttttcttt 620
||||||||||||||||||||||
Sbjct: 213 tctttctctctgttttttcttt 234
>gb|AU030804.1|AU030804 AU030804 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E60267_2Z, mRNA sequence
Length = 663
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 329 ttcccccagggcgtccccgccgagtgctcc 358
>gb|AU031504.1|AU031504 AU031504 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61752_2Z, mRNA sequence
Length = 256
Score = 44.1 bits (22), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 319 ttccccgccgagtgctcccgcaactgatt 347
|||||||||||||||| |||||| |||||
Sbjct: 1 ttccccgccgagtgctnccgcaagtgatt 29
>gb|AU174270.1|AU174270 AU174270 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S2904, mRNA sequence
Length = 448
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 121 ttcccccagggcgtccccgccgagtgctcc 150
>gb|AU182333.1|AU182333 AU182333 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2104, mRNA sequence
Length = 464
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 150 ttcccccagggcgtccccgccgagtgctcc 179
>gb|AU183251.1|AU183251 AU183251 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60366, mRNA sequence
Length = 441
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 107 ttcccccagggcgtccccgccgagtgctcc 136
>gb|CA754118.1|CA754118 BR040009000_PLATE_F01_6_013.ab1 OA Oryza sativa (japonica
cultivar-group) cDNA clone
BR040009000_PLATE_F01_6_013.ab1 similar to xyloglucan
endo-1,4-beta-D-glucanase (EC 3.2.1.-) - barley, mRNA
sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.10
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 307 ttcccgcagggcttccccgccgagtgctcc 336
||||| |||||| |||||||||||||||||
Sbjct: 160 ttcccccagggcgtccccgccgagtgctcc 189
>gb|AACV01023821.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023821, whole
genome shotgun sequence
Length = 13397
Score = 44.1 bits (22), Expect = 0.10
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 599 tctttctctctgttttttcttt 620
||||||||||||||||||||||
Sbjct: 2527 tctttctctctgttttttcttt 2548
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,252,293
Number of Sequences: 438736
Number of extensions: 1252293
Number of successful extensions: 12800
Number of sequences better than 0.5: 80
Number of HSP's better than 0.5 without gapping: 82
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12100
Number of HSP's gapped (non-prelim): 697
length of query: 712
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 691
effective length of database: 2,791,206,460
effective search space: 1928723663860
effective search space used: 1928723663860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)