BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK058985.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
ref|XM_550519.1| Oryza sativa (japonica cultivar-group), mRNA 404 e-110
dbj|AK120746.1| Oryza sativa (japonica cultivar-group) cDNA... 396 e-107
ref|NM_185445.1| Oryza sativa (japonica cultivar-group), p... 347 1e-092
gb|C28588.1|C28588 C28588 Rice callus cDNA Oryza sativa (ja... 165 9e-038
gb|AU181927.1|AU181927 AU181927 Rice callus (2001) Oryza sa... 157 2e-035
gb|AU063333.1|AU063333 AU063333 Rice callus Oryza sativa (j... 103 3e-019
gb|AACV01016995.1| Oryza sativa (japonica cultivar-group) c... 94 3e-016
dbj|AP002837.2| Oryza sativa (japonica cultivar-group) geno... 94 3e-016
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 94 3e-016
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 94 3e-016
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 94 3e-016
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 94 3e-016
gb|AQ273536.1|AQ273536 nbxb0030B09r CUGI Rice BAC Library O... 90 4e-015
gb|C98954.1|C98954 C98954 Rice panicle at flowering stage O... 90 4e-015
gb|AU063335.1|AU063335 AU063335 Rice callus Oryza sativa (j... 78 2e-011
gb|AACV01016641.1| Oryza sativa (japonica cultivar-group) c... 48 0.015
dbj|AP003804.3| Oryza sativa (japonica cultivar-group) geno... 48 0.015
dbj|AP004182.3| Oryza sativa (japonica cultivar-group) geno... 48 0.015
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.015
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 48 0.015
gb|C19863.1|C19863 C19863 Rice panicle at ripening stage Or... 46 0.058
gb|AU162014.1|AU162014 AU162014 Rice callus Oryza sativa (j... 46 0.058
gb|AU197541.1|AU197541 AU197541 Rice callus (2001) Oryza sa... 46 0.058
gb|CB638412.1|CB638412 OSJNEa06K19.f OSJNEa Oryza sativa (j... 46 0.058
gb|CB638464.1|CB638464 OSJNEa06M15.f OSJNEa Oryza sativa (j... 46 0.058
gb|CB643170.1|CB643170 OSJNEb03L12.r OSJNEb Oryza sativa (j... 46 0.058
gb|CB668858.1|CB668858 OSJNEd16O13.r OSJNEd Oryza sativa (j... 46 0.058
dbj|AP003262.3| Oryza sativa (japonica cultivar-group) geno... 46 0.058
dbj|AK066132.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.058
dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.058
dbj|AK103764.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.058
emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC O... 46 0.058
dbj|AP005908.3| Oryza sativa (japonica cultivar-group) geno... 46 0.058
ref|NT_107148.1| Oryza sativa (japonica cultivar-group) 46 0.058
gb|AACV01002969.1| Oryza sativa (japonica cultivar-group) c... 46 0.058
gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) c... 46 0.058
gb|AACV01024640.1| Oryza sativa (japonica cultivar-group) c... 46 0.058
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.058
ref|XM_463667.1| Oryza sativa (japonica cultivar-group), p... 46 0.058
ref|XM_466286.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.058
ref|XM_474061.1| Oryza sativa (japonica cultivar-group), p... 46 0.058
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 46 0.058
ref|NT_107201.1| Oryza sativa (japonica cultivar-group) 46 0.058
dbj|AP004865.3| Oryza sativa (japonica cultivar-group) geno... 46 0.058
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 46 0.058
dbj|AP004223.2| Oryza sativa (japonica cultivar-group) geno... 46 0.058
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.058
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.058
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.058
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.058
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.058
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.058
emb|AL606455.3|OSJN00015 Oryza sativa genomic DNA, chromoso... 46 0.058
emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromoso... 46 0.058
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.058
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 46 0.058
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 46 0.058
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 46 0.058
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.058
dbj|AK106987.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.23
gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, N... 44 0.23
ref|NT_107237.1| Oryza sativa (japonica cultivar-group) 44 0.23
dbj|AP004757.3| Oryza sativa (japonica cultivar-group) geno... 44 0.23
gb|AACV01005994.1| Oryza sativa (japonica cultivar-group) c... 44 0.23
gb|AACV01010241.1| Oryza sativa (japonica cultivar-group) c... 44 0.23
gb|AACV01013766.1| Oryza sativa (japonica cultivar-group) c... 44 0.23
ref|XM_470560.1| Oryza sativa (japonica cultivar-group), p... 44 0.23
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 44 0.23
ref|NT_079911.2| Oryza sativa (japonica cultivar-group) 44 0.23
gb|CH401212.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromoso... 44 0.23
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.23
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.23
>dbj|AK058985.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E06, full
insert sequence
Length = 1681
Score = 404 bits (204), Expect = e-110
Identities = 464/550 (84%), Gaps = 3/550 (0%)
Strand = Plus / Minus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 1375 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 1316
Query: 241 gctcccgctgtctagacgtcaaattttcggggatgttgacattgaaatggacatattgat 300
|| | |||||||| | |||||||| | ||||||||||||||||| |||||||| ||||
Sbjct: 1315 gcacgcgctgtctcggtgtcaaattcgcagggatgttgacattgaagtggacatactgat 1256
Query: 301 ctccgtggtacggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgac 360
|||| | ||||| ||| ||||| |||||||| ||||||||||||||||| ||| | || |
Sbjct: 1255 ctccatagtacgatgaatttctcgtcttgattccttttcctctcagaaccaccttttggc 1196
Query: 361 caggttgagtaccgggcttgatctttagaacaacgtctccactgagagttgggacttgaa 420
|||| |||||||| ||||||| ||||||||| || |||||| ||||||||| || ||||
Sbjct: 1195 caggctgagtaccaggcttgacctttagaactacatctccagagagagttggaacctgaa 1136
Query: 421 ctgtccctcccaaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctt 480
||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 1135 ctgtcccgcccaaaattgcctgagtcacgttcaatacagcatctacatgaatatcacctt 1076
Query: 481 tctctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatcacctgg-- 538
|||||||||| || || |||||||||||||||| || || |||||||||||||| ||
Sbjct: 1075 tctctcttcgaaataccggatcctcacgaaccttcagagttacataaagatcaccaggac 1016
Query: 539 -acggccatctgggtcttctccacctgatcgaaccacctttatggtgtcctcattatccg 597
|| |||||||| ||| |||||||||||| ||||| |||||| ||| ||| |||||
Sbjct: 1015 taccaccatctggatctgctccacctgatctaaccaactttataacgtcaccatcatccg 956
Query: 598 aaccaggcagtatgtcaaggcggactgatttccttccaggcacaactttgtttcctctgc 657
|||||||| ||||| || |||| ||| |||| ||||||||||| ||||| |||
Sbjct: 955 taccaggcactatgttgagtcggatgttttttgttcctggcacaactttccttcctttgc 896
Query: 658 atgccttgcagaattccttcacagttttcccagaaccaccacattttgtgcaggttgatt 717
||| ||||||||||||||||||||| |||||| ||||||||| | |||||| |||||||
Sbjct: 895 atgacttgcagaattccttcacagtcttcccactaccaccacactgtgtgcatgttgatt 836
Query: 718 gcatcctgaa 727
||||||||||
Sbjct: 835 gcatcctgaa 826
Score = 268 bits (135), Expect = 8e-069
Identities = 219/247 (88%)
Strand = Plus / Minus
Query: 1052 tttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttag 1111
|||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 498 tttctcatactgatcagggccaacctgatcatataatgatctcttctgatcatccttcaa 439
Query: 1112 agtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatt 1171
||||||||||||||| ||||||||||||||||| | |||||||| | ||||||||||||
Sbjct: 438 agtctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatt 379
Query: 1172 tgtgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggct 1231
||| || ||||||||||| || |||||| | ||||| || || ||||||||| |||||||
Sbjct: 378 tgtatccggatggagctttttcgcaagcgcgtaatacgctttcttgatctccccctggct 319
Query: 1232 ggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtccc 1291
||| || |||| |||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 318 cgcgttcctgctcacgccgagcacatcgtagtagtccctcgctgccaccggcctcgtccc 259
Query: 1292 gtggaag 1298
|||||||
Sbjct: 258 gtggaag 252
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 939 atgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctca 998
||||| ||||||||||||||||||||||| ||||| || || ||||||| ||||||||||
Sbjct: 614 atgtttctaaagaaatcattcattccaccgccgccgccacctccaccaaaaatatcctca 555
Query: 999 aatggatttacaaaacc 1015
|| ||||| |||||||
Sbjct: 554 aacggattgccaaaacc 538
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 747 ataaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 806 ataaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 757
>ref|XM_550519.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1657
Score = 404 bits (204), Expect = e-110
Identities = 464/550 (84%), Gaps = 3/550 (0%)
Strand = Plus / Minus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 1346 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 1287
Query: 241 gctcccgctgtctagacgtcaaattttcggggatgttgacattgaaatggacatattgat 300
|| | |||||||| | |||||||| | ||||||||||||||||| |||||||| ||||
Sbjct: 1286 gcacgcgctgtctcggtgtcaaattcgcagggatgttgacattgaagtggacatactgat 1227
Query: 301 ctccgtggtacggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgac 360
|||| | ||||| ||| ||||| |||||||| ||||||||||||||||| ||| | || |
Sbjct: 1226 ctccatagtacgatgaatttctcgtcttgattccttttcctctcagaaccaccttttggc 1167
Query: 361 caggttgagtaccgggcttgatctttagaacaacgtctccactgagagttgggacttgaa 420
|||| |||||||| ||||||| ||||||||| || |||||| ||||||||| || ||||
Sbjct: 1166 caggctgagtaccaggcttgacctttagaactacatctccagagagagttggaacctgaa 1107
Query: 421 ctgtccctcccaaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctt 480
||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 1106 ctgtcccgcccaaaattgcctgagtcacgttcaatacagcatctacatgaatatcacctt 1047
Query: 481 tctctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatcacctgg-- 538
|||||||||| || || |||||||||||||||| || || |||||||||||||| ||
Sbjct: 1046 tctctcttcgaaataccggatcctcacgaaccttcagagttacataaagatcaccaggac 987
Query: 539 -acggccatctgggtcttctccacctgatcgaaccacctttatggtgtcctcattatccg 597
|| |||||||| ||| |||||||||||| ||||| |||||| ||| ||| |||||
Sbjct: 986 taccaccatctggatctgctccacctgatctaaccaactttataacgtcaccatcatccg 927
Query: 598 aaccaggcagtatgtcaaggcggactgatttccttccaggcacaactttgtttcctctgc 657
|||||||| ||||| || |||| ||| |||| ||||||||||| ||||| |||
Sbjct: 926 taccaggcactatgttgagtcggatgttttttgttcctggcacaactttccttcctttgc 867
Query: 658 atgccttgcagaattccttcacagttttcccagaaccaccacattttgtgcaggttgatt 717
||| ||||||||||||||||||||| |||||| ||||||||| | |||||| |||||||
Sbjct: 866 atgacttgcagaattccttcacagtcttcccactaccaccacactgtgtgcatgttgatt 807
Query: 718 gcatcctgaa 727
||||||||||
Sbjct: 806 gcatcctgaa 797
Score = 268 bits (135), Expect = 8e-069
Identities = 219/247 (88%)
Strand = Plus / Minus
Query: 1052 tttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttag 1111
|||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 469 tttctcatactgatcagggccaacctgatcatataatgatctcttctgatcatccttcaa 410
Query: 1112 agtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatt 1171
||||||||||||||| ||||||||||||||||| | |||||||| | ||||||||||||
Sbjct: 409 agtctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatt 350
Query: 1172 tgtgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggct 1231
||| || ||||||||||| || |||||| | ||||| || || ||||||||| |||||||
Sbjct: 349 tgtatccggatggagctttttcgcaagcgcgtaatacgctttcttgatctccccctggct 290
Query: 1232 ggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtccc 1291
||| || |||| |||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 289 cgcgttcctgctcacgccgagcacatcgtagtagtccctcgctgccaccggcctcgtccc 230
Query: 1292 gtggaag 1298
|||||||
Sbjct: 229 gtggaag 223
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 939 atgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctca 998
||||| ||||||||||||||||||||||| ||||| || || ||||||| ||||||||||
Sbjct: 585 atgtttctaaagaaatcattcattccaccgccgccgccacctccaccaaaaatatcctca 526
Query: 999 aatggatttacaaaacc 1015
|| ||||| |||||||
Sbjct: 525 aacggattgccaaaacc 509
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 747 ataaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 777 ataaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 728
>dbj|AK120746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004K12, full
insert sequence
Length = 1656
Score = 396 bits (200), Expect = e-107
Identities = 463/550 (84%), Gaps = 3/550 (0%)
Strand = Plus / Minus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 1345 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 1286
Query: 241 gctcccgctgtctagacgtcaaattttcggggatgttgacattgaaatggacatattgat 300
|| | |||||||| | |||||||| | ||||||||||||||||| |||||||| ||||
Sbjct: 1285 gcacgcgctgtctcggtgtcaaattcgcagggatgttgacattgaagtggacatactgat 1226
Query: 301 ctccgtggtacggtgagtttcttgtcttgatcccttttcctctcagaactaccctctgac 360
|||| | ||||| ||| ||||| |||||||| ||||||||||||||||| ||| | || |
Sbjct: 1225 ctccatagtacgatgaatttctcgtcttgattccttttcctctcagaaccaccttttggc 1166
Query: 361 caggttgagtaccgggcttgatctttagaacaacgtctccactgagagttgggacttgaa 420
|||| |||||||| ||||||| ||||||||| || |||||| ||||||||| || ||||
Sbjct: 1165 caggctgagtaccaggcttgacctttagaactacatctccagagagagttggaacctgaa 1106
Query: 421 ctgtccctcccaaaattgcctgagtcacattcaggacagcatcaacatgaatatcacctt 480
||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct: 1105 ctgtcccgcccaaaattgcctgagtcacgttcaatacagcatctacatgaatatcacctt 1046
Query: 481 tctctcttcggaaaacaggatcctcacgaacctcgagggtcacataaagatcacctgg-- 538
|||||||||| || || |||||||||||||||| || || |||||||||||||| ||
Sbjct: 1045 tctctcttcgaaataccggatcctcacgaaccttcagagttacataaagatcaccaggac 986
Query: 539 -acggccatctgggtcttctccacctgatcgaaccacctttatggtgtcctcattatccg 597
|| |||||||| ||| |||||||||||| ||||| |||||| ||| ||| || ||
Sbjct: 985 taccaccatctggatctgctccacctgatctaaccaactttataacgtcaccatcattcg 926
Query: 598 aaccaggcagtatgtcaaggcggactgatttccttccaggcacaactttgtttcctctgc 657
|||||||| ||||| || |||| ||| |||| ||||||||||| ||||| |||
Sbjct: 925 taccaggcactatgttgagtcggatgttttttgttcctggcacaactttccttcctttgc 866
Query: 658 atgccttgcagaattccttcacagttttcccagaaccaccacattttgtgcaggttgatt 717
||| ||||||||||||||||||||| |||||| ||||||||| | |||||| |||||||
Sbjct: 865 atgacttgcagaattccttcacagtcttcccactaccaccacactgtgtgcatgttgatt 806
Query: 718 gcatcctgaa 727
||||||||||
Sbjct: 805 gcatcctgaa 796
Score = 268 bits (135), Expect = 8e-069
Identities = 219/247 (88%)
Strand = Plus / Minus
Query: 1052 tttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttag 1111
|||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 468 tttctcatactgatcagggccaacctgatcatataatgatctcttctgatcatccttcaa 409
Query: 1112 agtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatt 1171
||||||||||||||| ||||||||||||||||| | |||||||| | ||||||||||||
Sbjct: 408 agtctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatt 349
Query: 1172 tgtgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggct 1231
||| || ||||||||||| || |||||| | ||||| || || ||||||||| |||||||
Sbjct: 348 tgtatccggatggagctttttcgcaagcgcgtaatacgctttcttgatctccccctggct 289
Query: 1232 ggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtccc 1291
||| || |||| |||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 288 cgcgttcctgctcacgccgagcacatcgtagtagtccctcgctgccaccggcctcgtccc 229
Query: 1292 gtggaag 1298
|||||||
Sbjct: 228 gtggaag 222
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 939 atgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctca 998
||||| ||||||||||||||||||||||| ||||| || || ||||||| ||||||||||
Sbjct: 584 atgtttctaaagaaatcattcattccaccgccgccgccacctccaccaaaaatatcctca 525
Query: 999 aatggatttacaaaacc 1015
|| ||||| |||||||
Sbjct: 524 aacggattgccaaaacc 508
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 747 ataaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 776 ataaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 727
>ref|NM_185445.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1248
Score = 347 bits (175), Expect = 1e-092
Identities = 390/461 (84%), Gaps = 3/461 (0%)
Strand = Plus / Minus
Query: 270 gggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttgtcttg 329
||||||||||||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||
Sbjct: 1181 gggatgttgacattgaagtggacatactgatctccatagtacgatgaatttctcgtcttg 1122
Query: 330 atcccttttcctctcagaactaccctctgaccaggttgagtaccgggcttgatctttaga 389
|| ||||||||||||||||| ||| | || ||||| |||||||| ||||||| |||||||
Sbjct: 1121 attccttttcctctcagaaccaccttttggccaggctgagtaccaggcttgacctttaga 1062
Query: 390 acaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcctgagtcaca 449
|| || |||||| ||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 1061 actacatctccagagagagttggaacctgaactgtcccgcccaaaattgcctgagtcacg 1002
Query: 450 ttcaggacagcatcaacatgaatatcacctttctctcttcggaaaacaggatcctcacga 509
|||| |||||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 1001 ttcaatacagcatctacatgaatatcacctttctctcttcgaaataccggatcctcacga 942
Query: 510 acctcgagggtcacataaagatcacctgg---acggccatctgggtcttctccacctgat 566
|||| || || |||||||||||||| || || |||||||| ||| |||||||||||
Sbjct: 941 accttcagagttacataaagatcaccaggactaccaccatctggatctgctccacctgat 882
Query: 567 cgaaccacctttatggtgtcctcattatccgaaccaggcagtatgtcaaggcggactgat 626
| ||||| |||||| ||| ||| ||||| |||||||| ||||| || |||| |
Sbjct: 881 ctaaccaactttataacgtcaccatcatccgtaccaggcactatgttgagtcggatgttt 822
Query: 627 ttccttccaggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttc 686
|| |||| ||||||||||| ||||| |||||| ||||||||||||||||||||| |||
Sbjct: 821 tttgttcctggcacaactttccttcctttgcatgacttgcagaattccttcacagtcttc 762
Query: 687 ccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 761 ccactaccaccacactgtgtgcatgttgattgcatcctgaa 721
Score = 268 bits (135), Expect = 8e-069
Identities = 219/247 (88%)
Strand = Plus / Minus
Query: 1052 tttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttag 1111
|||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 438 tttctcatactgatcagggccaacctgatcatataatgatctcttctgatcatccttcaa 379
Query: 1112 agtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatt 1171
||||||||||||||| ||||||||||||||||| | |||||||| | ||||||||||||
Sbjct: 378 agtctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatt 319
Query: 1172 tgtgtctggatggagcttctttgcaagcccataataggcctttttgatctccgcctggct 1231
||| || ||||||||||| || |||||| | ||||| || || ||||||||| |||||||
Sbjct: 318 tgtatccggatggagctttttcgcaagcgcgtaatacgctttcttgatctccccctggct 259
Query: 1232 ggcgctcttgctgacgccgagcacatcgtagtagtcccttgccgccaccggcctggtccc 1291
||| || |||| |||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 258 cgcgttcctgctcacgccgagcacatcgtagtagtccctcgctgccaccggcctcgtccc 199
Query: 1292 gtggaag 1298
|||||||
Sbjct: 198 gtggaag 192
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 939 atgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctca 998
||||| ||||||||||||||||||||||| ||||| || || ||||||| ||||||||||
Sbjct: 554 atgtttctaaagaaatcattcattccaccgccgccgccacctccaccaaaaatatcctca 495
Query: 999 aatggatttacaaaacc 1015
|| ||||| |||||||
Sbjct: 494 aacggattgccaaaacc 478
>gb|C28588.1|C28588 C28588 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61695_1A, mRNA sequence
Length = 434
Score = 165 bits (83), Expect = 9e-038
Identities = 124/138 (89%)
Strand = Plus / Minus
Query: 1052 tttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttag 1111
|||||||||||||| ||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 142 tttctcatactgatnagggccaacctgatcatataatgatctcttctgatcatccttcaa 83
Query: 1112 agtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatt 1171
||||||||||||||| ||||||||||||||||| | |||||||| | ||||||||||||
Sbjct: 82 agtctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatt 23
Query: 1172 tgtgtctggatggagctt 1189
||| || |||||||||||
Sbjct: 22 tgtatccggatggagctt 5
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 939 atgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctca 998
||||| ||||||||||||||||||||||| ||||| || || ||||||| ||||||||||
Sbjct: 258 atgtttctaaagaaatcattcattccaccgccgccgccacctccaccaaaaatatcctca 199
Query: 999 aatggatttacaaaacc 1015
|| ||||| |||||||
Sbjct: 198 aacggattgccaaaacc 182
>gb|AU181927.1|AU181927 AU181927 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C61864, mRNA sequence
Length = 555
Score = 157 bits (79), Expect = 2e-035
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 1052 tttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctttag 1111
|||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct: 144 tttctcatactgatcagggccaacctgatcatataatgatctcttctgatcatccttcaa 85
Query: 1112 agtctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatt 1171
||||||||||||||| ||||||||||||||||| | |||||||| | ||||||||||||
Sbjct: 84 agtctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatt 25
Query: 1172 tgt 1174
|||
Sbjct: 24 tgt 22
Score = 93.7 bits (47), Expect = 3e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 649 ttcctctgcatgccttgcagaattccttcacagttttcccagaaccaccacattttgtgc 708
||||| |||||| ||||||||||||||||||||| |||||| ||||||||| | |||||
Sbjct: 550 ttcctttgcatgacttgcagaattccttcacagtcttcccactaccaccacactgtgtgc 491
Query: 709 aggttgattgcatcctgaa 727
| |||||||||||||||||
Sbjct: 490 atgttgattgcatcctgaa 472
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 939 atgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctca 998
||||| ||||||||||||||||||||||| ||||| || || ||||||| ||||||||||
Sbjct: 260 atgtttctaaagaaatcattcattccaccgccgccgccacctccaccaaaaatatcctca 201
Query: 999 aatggatttacaaaacc 1015
|| ||||| |||||||
Sbjct: 200 aacggattgccaaaacc 184
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 747 ataaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 452 ataaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 403
>gb|AU063333.1|AU063333 AU063333 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60852_1A, mRNA sequence
Length = 411
Score = 103 bits (52), Expect = 3e-019
Identities = 82/92 (89%)
Strand = Plus / Minus
Query: 636 ggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccagaacca 695
||||||||||| ||||| |||||| ||||||||||||||||||||| |||||| ||||
Sbjct: 280 ggcacaactttccttcctttgcatgacttgcagaattccttcacagtcttcccactacca 221
Query: 696 ccacattttgtgcaggttgattgcatcctgaa 727
||||| | |||||| |||||||||||||||||
Sbjct: 220 ccacactgtgtgcatgttgattgcatcctgaa 189
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 747 ataaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 169 ataaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 120
>gb|AACV01016995.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016995, whole
genome shotgun sequence
Length = 36531
Score = 93.7 bits (47), Expect = 3e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 439 cctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacag 498
|||||||||| |||| |||||||| |||||||||||||||||||||||||| || || |
Sbjct: 2986 cctgagtcacgttcaatacagcatctacatgaatatcacctttctctcttcgaaataccg 3045
Query: 499 gatcctcacgaacct 513
|||||||||||||||
Sbjct: 3046 gatcctcacgaacct 3060
Score = 89.7 bits (45), Expect = 4e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1215 ttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgcc 1274
||||||||| ||||||| ||| || |||| |||||||||||||||||||||||||| ||
Sbjct: 6195 ttgatctccccctggctcgcgttcctgctcacgccgagcacatcgtagtagtccctcgct 6254
Query: 1275 gccaccggcctggtccc 1291
||||||||||| |||||
Sbjct: 6255 gccaccggcctcgtccc 6271
Score = 89.7 bits (45), Expect = 4e-015
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 5613 ctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatttgt 5672
Query: 1175 gtctggatggagcttctttgcaagc 1199
|| ||||||||||| || ||||||
Sbjct: 5673 atccggatggagctttttcgcaagc 5697
Score = 73.8 bits (37), Expect = 3e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 1812 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 1871
Query: 241 gctcccgctgtct 253
|| | ||||||||
Sbjct: 1872 gcacgcgctgtct 1884
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 270 gggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttgtcttg 329
||||||||||||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||
Sbjct: 1985 gggatgttgacattgaagtggacatactgatctccatagtacgatgaatttctcgtcttg 2044
Query: 330 at 331
||
Sbjct: 2045 at 2046
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 953 atcattcattccaccaccgccaccgccaccaccaagaatatcctcaaatggatttacaaa 1012
||||||||||||||| ||||| || || ||||||| |||||||||||| ||||| ||||
Sbjct: 4995 atcattcattccaccgccgccgccacctccaccaaaaatatcctcaaacggattgccaaa 5054
Query: 1013 acc 1015
|||
Sbjct: 5055 acc 5057
Score = 61.9 bits (31), Expect = 1e-006
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
|||||||||| |||||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 4030 ccttcacagtcttcccactaccaccacactgtgtgcatgttgattgcatcctgaa 4084
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 383 ctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcct 441
||||||||| || |||||| ||||||||| || ||||||||||| |||||||||||||
Sbjct: 2418 ctttagaactacatctccagagagagttggaacctgaactgtcccgcccaaaattgcct 2476
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 749 aaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 4208 aaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 4255
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1052 tttctcatactgatcagggccaacctg 1078
|||||||||||||||||||||||||||
Sbjct: 5097 tttctcatactgatcagggccaacctg 5123
Score = 50.1 bits (25), Expect = 0.004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattcct 675
|||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 3522 ttcctggcacaactttccttcctttgcatgacttgcagaattcct 3566
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 333 ccttttcctctcagaactaccctctgaccaggttgagtaccgggcttga 381
||||||||||||||||| ||| | || ||||| |||||||| |||||||
Sbjct: 2282 ccttttcctctcagaaccaccttttggccaggctgagtaccaggcttga 2330
Score = 46.1 bits (23), Expect = 0.058
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||| || || ||||||||
Sbjct: 5483 acctgatcatataatgatctcttctgatcatcctt 5517
Score = 44.1 bits (22), Expect = 0.23
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 543 ccatctgggtcttctccacctgatcgaaccacctttat 580
|||||||| ||| |||||||||||| ||||| ||||||
Sbjct: 3340 ccatctggatctgctccacctgatctaaccaactttat 3377
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0019F11
Length = 123673
Score = 93.7 bits (47), Expect = 3e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 439 cctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacag 498
|||||||||| |||| |||||||| |||||||||||||||||||||||||| || || |
Sbjct: 108720 cctgagtcacgttcaatacagcatctacatgaatatcacctttctctcttcgaaataccg 108779
Query: 499 gatcctcacgaacct 513
|||||||||||||||
Sbjct: 108780 gatcctcacgaacct 108794
Score = 89.7 bits (45), Expect = 4e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1215 ttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgcc 1274
||||||||| ||||||| ||| || |||| |||||||||||||||||||||||||| ||
Sbjct: 111929 ttgatctccccctggctcgcgttcctgctcacgccgagcacatcgtagtagtccctcgct 111988
Query: 1275 gccaccggcctggtccc 1291
||||||||||| |||||
Sbjct: 111989 gccaccggcctcgtccc 112005
Score = 89.7 bits (45), Expect = 4e-015
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 111347 ctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatttgt 111406
Query: 1175 gtctggatggagcttctttgcaagc 1199
|| ||||||||||| || ||||||
Sbjct: 111407 atccggatggagctttttcgcaagc 111431
Score = 73.8 bits (37), Expect = 3e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 107546 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 107605
Query: 241 gctcccgctgtct 253
|| | ||||||||
Sbjct: 107606 gcacgcgctgtct 107618
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 270 gggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttgtcttg 329
||||||||||||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||
Sbjct: 107719 gggatgttgacattgaagtggacatactgatctccatagtacgatgaatttctcgtcttg 107778
Query: 330 at 331
||
Sbjct: 107779 at 107780
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 953 atcattcattccaccaccgccaccgccaccaccaagaatatcctcaaatggatttacaaa 1012
||||||||||||||| ||||| || || ||||||| |||||||||||| ||||| ||||
Sbjct: 110729 atcattcattccaccgccgccgccacctccaccaaaaatatcctcaaacggattgccaaa 110788
Query: 1013 acc 1015
|||
Sbjct: 110789 acc 110791
Score = 61.9 bits (31), Expect = 1e-006
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
|||||||||| |||||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 109764 ccttcacagtcttcccactaccaccacactgtgtgcatgttgattgcatcctgaa 109818
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 383 ctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcct 441
||||||||| || |||||| ||||||||| || ||||||||||| |||||||||||||
Sbjct: 108152 ctttagaactacatctccagagagagttggaacctgaactgtcccgcccaaaattgcct 108210
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 749 aaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 109942 aaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 109989
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1052 tttctcatactgatcagggccaacctg 1078
|||||||||||||||||||||||||||
Sbjct: 110831 tttctcatactgatcagggccaacctg 110857
Score = 50.1 bits (25), Expect = 0.004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattcct 675
|||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 109256 ttcctggcacaactttccttcctttgcatgacttgcagaattcct 109300
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 333 ccttttcctctcagaactaccctctgaccaggttgagtaccgggcttga 381
||||||||||||||||| ||| | || ||||| |||||||| |||||||
Sbjct: 108016 ccttttcctctcagaaccaccttttggccaggctgagtaccaggcttga 108064
Score = 46.1 bits (23), Expect = 0.058
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||| || || ||||||||
Sbjct: 111217 acctgatcatataatgatctcttctgatcatcctt 111251
Score = 44.1 bits (22), Expect = 0.23
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 543 ccatctgggtcttctccacctgatcgaaccacctttat 580
|||||||| ||| |||||||||||| ||||| ||||||
Sbjct: 109074 ccatctggatctgctccacctgatctaaccaactttat 109111
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 93.7 bits (47), Expect = 3e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 439 cctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacag 498
|||||||||| |||| |||||||| |||||||||||||||||||||||||| || || |
Sbjct: 891402 cctgagtcacgttcaatacagcatctacatgaatatcacctttctctcttcgaaataccg 891461
Query: 499 gatcctcacgaacct 513
|||||||||||||||
Sbjct: 891462 gatcctcacgaacct 891476
Score = 89.7 bits (45), Expect = 4e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1215 ttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgcc 1274
||||||||| ||||||| ||| || |||| |||||||||||||||||||||||||| ||
Sbjct: 894611 ttgatctccccctggctcgcgttcctgctcacgccgagcacatcgtagtagtccctcgct 894670
Query: 1275 gccaccggcctggtccc 1291
||||||||||| |||||
Sbjct: 894671 gccaccggcctcgtccc 894687
Score = 89.7 bits (45), Expect = 4e-015
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 894029 ctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatttgt 894088
Query: 1175 gtctggatggagcttctttgcaagc 1199
|| ||||||||||| || ||||||
Sbjct: 894089 atccggatggagctttttcgcaagc 894113
Score = 73.8 bits (37), Expect = 3e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 890228 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 890287
Query: 241 gctcccgctgtct 253
|| | ||||||||
Sbjct: 890288 gcacgcgctgtct 890300
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 270 gggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttgtcttg 329
||||||||||||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||
Sbjct: 890401 gggatgttgacattgaagtggacatactgatctccatagtacgatgaatttctcgtcttg 890460
Query: 330 at 331
||
Sbjct: 890461 at 890462
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 953 atcattcattccaccaccgccaccgccaccaccaagaatatcctcaaatggatttacaaa 1012
||||||||||||||| ||||| || || ||||||| |||||||||||| ||||| ||||
Sbjct: 893411 atcattcattccaccgccgccgccacctccaccaaaaatatcctcaaacggattgccaaa 893470
Query: 1013 acc 1015
|||
Sbjct: 893471 acc 893473
Score = 61.9 bits (31), Expect = 1e-006
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
|||||||||| |||||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 892446 ccttcacagtcttcccactaccaccacactgtgtgcatgttgattgcatcctgaa 892500
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 383 ctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcct 441
||||||||| || |||||| ||||||||| || ||||||||||| |||||||||||||
Sbjct: 890834 ctttagaactacatctccagagagagttggaacctgaactgtcccgcccaaaattgcct 890892
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 749 aaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 892624 aaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 892671
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1052 tttctcatactgatcagggccaacctg 1078
|||||||||||||||||||||||||||
Sbjct: 893513 tttctcatactgatcagggccaacctg 893539
Score = 50.1 bits (25), Expect = 0.004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattcct 675
|||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 891938 ttcctggcacaactttccttcctttgcatgacttgcagaattcct 891982
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 333 ccttttcctctcagaactaccctctgaccaggttgagtaccgggcttga 381
||||||||||||||||| ||| | || ||||| |||||||| |||||||
Sbjct: 890698 ccttttcctctcagaaccaccttttggccaggctgagtaccaggcttga 890746
Score = 46.1 bits (23), Expect = 0.058
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||| || || ||||||||
Sbjct: 893899 acctgatcatataatgatctcttctgatcatcctt 893933
Score = 44.1 bits (22), Expect = 0.23
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 543 ccatctgggtcttctccacctgatcgaaccacctttat 580
|||||||| ||| |||||||||||| ||||| ||||||
Sbjct: 891756 ccatctggatctgctccacctgatctaaccaactttat 891793
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 93.7 bits (47), Expect = 3e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 439 cctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacag 498
|||||||||| |||| |||||||| |||||||||||||||||||||||||| || || |
Sbjct: 13946860 cctgagtcacgttcaatacagcatctacatgaatatcacctttctctcttcgaaataccg 13946919
Query: 499 gatcctcacgaacct 513
|||||||||||||||
Sbjct: 13946920 gatcctcacgaacct 13946934
Score = 89.7 bits (45), Expect = 4e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1215 ttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgcc 1274
||||||||| ||||||| ||| || |||| |||||||||||||||||||||||||| ||
Sbjct: 13950069 ttgatctccccctggctcgcgttcctgctcacgccgagcacatcgtagtagtccctcgct 13950128
Query: 1275 gccaccggcctggtccc 1291
||||||||||| |||||
Sbjct: 13950129 gccaccggcctcgtccc 13950145
Score = 89.7 bits (45), Expect = 4e-015
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 13949487 ctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatttgt 13949546
Query: 1175 gtctggatggagcttctttgcaagc 1199
|| ||||||||||| || ||||||
Sbjct: 13949547 atccggatggagctttttcgcaagc 13949571
Score = 73.8 bits (37), Expect = 3e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 13945686 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 13945745
Query: 241 gctcccgctgtct 253
|| | ||||||||
Sbjct: 13945746 gcacgcgctgtct 13945758
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 270 gggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttgtcttg 329
||||||||||||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||
Sbjct: 13945859 gggatgttgacattgaagtggacatactgatctccatagtacgatgaatttctcgtcttg 13945918
Query: 330 at 331
||
Sbjct: 13945919 at 13945920
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 953 atcattcattccaccaccgccaccgccaccaccaagaatatcctcaaatggatttacaaa 1012
||||||||||||||| ||||| || || ||||||| |||||||||||| ||||| ||||
Sbjct: 13948869 atcattcattccaccgccgccgccacctccaccaaaaatatcctcaaacggattgccaaa 13948928
Query: 1013 acc 1015
|||
Sbjct: 13948929 acc 13948931
Score = 61.9 bits (31), Expect = 1e-006
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
|||||||||| |||||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 13947904 ccttcacagtcttcccactaccaccacactgtgtgcatgttgattgcatcctgaa 13947958
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 383 ctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcct 441
||||||||| || |||||| ||||||||| || ||||||||||| |||||||||||||
Sbjct: 13946292 ctttagaactacatctccagagagagttggaacctgaactgtcccgcccaaaattgcct 13946350
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 749 aaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 13948082 aaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 13948129
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1052 tttctcatactgatcagggccaacctg 1078
|||||||||||||||||||||||||||
Sbjct: 13948971 tttctcatactgatcagggccaacctg 13948997
Score = 50.1 bits (25), Expect = 0.004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattcct 675
|||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 13947396 ttcctggcacaactttccttcctttgcatgacttgcagaattcct 13947440
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 333 ccttttcctctcagaactaccctctgaccaggttgagtaccgggcttga 381
||||||||||||||||| ||| | || ||||| |||||||| |||||||
Sbjct: 13946156 ccttttcctctcagaaccaccttttggccaggctgagtaccaggcttga 13946204
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 8784691 ccaccaccgccaccgccaccacca 8784714
Score = 46.1 bits (23), Expect = 0.058
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||| || || ||||||||
Sbjct: 13949357 acctgatcatataatgatctcttctgatcatcctt 13949391
Score = 44.1 bits (22), Expect = 0.23
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 543 ccatctgggtcttctccacctgatcgaaccacctttat 580
|||||||| ||| |||||||||||| ||||| ||||||
Sbjct: 13947214 ccatctggatctgctccacctgatctaaccaactttat 13947251
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 93.7 bits (47), Expect = 3e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 439 cctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacag 498
|||||||||| |||| |||||||| |||||||||||||||||||||||||| || || |
Sbjct: 27346299 cctgagtcacgttcaatacagcatctacatgaatatcacctttctctcttcgaaataccg 27346358
Query: 499 gatcctcacgaacct 513
|||||||||||||||
Sbjct: 27346359 gatcctcacgaacct 27346373
Score = 89.7 bits (45), Expect = 4e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1215 ttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgcc 1274
||||||||| ||||||| ||| || |||| |||||||||||||||||||||||||| ||
Sbjct: 27349508 ttgatctccccctggctcgcgttcctgctcacgccgagcacatcgtagtagtccctcgct 27349567
Query: 1275 gccaccggcctggtccc 1291
||||||||||| |||||
Sbjct: 27349568 gccaccggcctcgtccc 27349584
Score = 89.7 bits (45), Expect = 4e-015
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 27348926 ctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatttgt 27348985
Query: 1175 gtctggatggagcttctttgcaagc 1199
|| ||||||||||| || ||||||
Sbjct: 27348986 atccggatggagctttttcgcaagc 27349010
Score = 73.8 bits (37), Expect = 3e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 27345125 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 27345184
Query: 241 gctcccgctgtct 253
|| | ||||||||
Sbjct: 27345185 gcacgcgctgtct 27345197
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 270 gggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttgtcttg 329
||||||||||||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||
Sbjct: 27345298 gggatgttgacattgaagtggacatactgatctccatagtacgatgaatttctcgtcttg 27345357
Query: 330 at 331
||
Sbjct: 27345358 at 27345359
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 953 atcattcattccaccaccgccaccgccaccaccaagaatatcctcaaatggatttacaaa 1012
||||||||||||||| ||||| || || ||||||| |||||||||||| ||||| ||||
Sbjct: 27348308 atcattcattccaccgccgccgccacctccaccaaaaatatcctcaaacggattgccaaa 27348367
Query: 1013 acc 1015
|||
Sbjct: 27348368 acc 27348370
Score = 61.9 bits (31), Expect = 1e-006
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
|||||||||| |||||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 27347343 ccttcacagtcttcccactaccaccacactgtgtgcatgttgattgcatcctgaa 27347397
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 383 ctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcct 441
||||||||| || |||||| ||||||||| || ||||||||||| |||||||||||||
Sbjct: 27345731 ctttagaactacatctccagagagagttggaacctgaactgtcccgcccaaaattgcct 27345789
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 749 aaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 27347521 aaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 27347568
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1052 tttctcatactgatcagggccaacctg 1078
|||||||||||||||||||||||||||
Sbjct: 27348410 tttctcatactgatcagggccaacctg 27348436
Score = 50.1 bits (25), Expect = 0.004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattcct 675
|||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 27346835 ttcctggcacaactttccttcctttgcatgacttgcagaattcct 27346879
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 333 ccttttcctctcagaactaccctctgaccaggttgagtaccgggcttga 381
||||||||||||||||| ||| | || ||||| |||||||| |||||||
Sbjct: 27345595 ccttttcctctcagaaccaccttttggccaggctgagtaccaggcttga 27345643
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 22184130 ccaccaccgccaccgccaccacca 22184153
Score = 46.1 bits (23), Expect = 0.058
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||| || || ||||||||
Sbjct: 27348796 acctgatcatataatgatctcttctgatcatcctt 27348830
Score = 44.1 bits (22), Expect = 0.23
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 543 ccatctgggtcttctccacctgatcgaaccacctttat 580
|||||||| ||| |||||||||||| ||||| ||||||
Sbjct: 27346653 ccatctggatctgctccacctgatctaaccaactttat 27346690
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 93.7 bits (47), Expect = 3e-016
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 439 cctgagtcacattcaggacagcatcaacatgaatatcacctttctctcttcggaaaacag 498
|||||||||| |||| |||||||| |||||||||||||||||||||||||| || || |
Sbjct: 927825 cctgagtcacgttcaatacagcatctacatgaatatcacctttctctcttcgaaataccg 927884
Query: 499 gatcctcacgaacct 513
|||||||||||||||
Sbjct: 927885 gatcctcacgaacct 927899
Score = 89.7 bits (45), Expect = 4e-015
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 1215 ttgatctccgcctggctggcgctcttgctgacgccgagcacatcgtagtagtcccttgcc 1274
||||||||| ||||||| ||| || |||| |||||||||||||||||||||||||| ||
Sbjct: 931034 ttgatctccccctggctcgcgttcctgctcacgccgagcacatcgtagtagtccctcgct 931093
Query: 1275 gccaccggcctggtccc 1291
||||||||||| |||||
Sbjct: 931094 gccaccggcctcgtccc 931110
Score = 89.7 bits (45), Expect = 4e-015
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 930452 ctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatttgt 930511
Query: 1175 gtctggatggagcttctttgcaagc 1199
|| ||||||||||| || ||||||
Sbjct: 930512 atccggatggagctttttcgcaagc 930536
Score = 73.8 bits (37), Expect = 3e-010
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 181 ctgctgccttggcgtccttctcgtcttcgccttgctcctccttcgcgaattcctcgatca 240
|||||||||| ||||| ||||| ||||| ||||||| |||||||| |||||||||||||
Sbjct: 926651 ctgctgcctttgcgtctttctcctcttcagcttgctcttccttcgcaaattcctcgatca 926710
Query: 241 gctcccgctgtct 253
|| | ||||||||
Sbjct: 926711 gcacgcgctgtct 926723
Score = 67.9 bits (34), Expect = 2e-008
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 270 gggatgttgacattgaaatggacatattgatctccgtggtacggtgagtttcttgtcttg 329
||||||||||||||||| |||||||| |||||||| | ||||| ||| ||||| ||||||
Sbjct: 926824 gggatgttgacattgaagtggacatactgatctccatagtacgatgaatttctcgtcttg 926883
Query: 330 at 331
||
Sbjct: 926884 at 926885
Score = 61.9 bits (31), Expect = 1e-006
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 953 atcattcattccaccaccgccaccgccaccaccaagaatatcctcaaatggatttacaaa 1012
||||||||||||||| ||||| || || ||||||| |||||||||||| ||||| ||||
Sbjct: 929834 atcattcattccaccgccgccgccacctccaccaaaaatatcctcaaacggattgccaaa 929893
Query: 1013 acc 1015
|||
Sbjct: 929894 acc 929896
Score = 61.9 bits (31), Expect = 1e-006
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 673 ccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
|||||||||| |||||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 928869 ccttcacagtcttcccactaccaccacactgtgtgcatgttgattgcatcctgaa 928923
Score = 61.9 bits (31), Expect = 1e-006
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 383 ctttagaacaacgtctccactgagagttgggacttgaactgtccctcccaaaattgcct 441
||||||||| || |||||| ||||||||| || ||||||||||| |||||||||||||
Sbjct: 927257 ctttagaactacatctccagagagagttggaacctgaactgtcccgcccaaaattgcct 927315
Score = 56.0 bits (28), Expect = 6e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 749 aaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 929047 aaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 929094
Score = 54.0 bits (27), Expect = 2e-004
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1052 tttctcatactgatcagggccaacctg 1078
|||||||||||||||||||||||||||
Sbjct: 929936 tttctcatactgatcagggccaacctg 929962
Score = 50.1 bits (25), Expect = 0.004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 631 ttccaggcacaactttgtttcctctgcatgccttgcagaattcct 675
|||| ||||||||||| ||||| |||||| ||||||||||||||
Sbjct: 928361 ttcctggcacaactttccttcctttgcatgacttgcagaattcct 928405
Score = 50.1 bits (25), Expect = 0.004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 333 ccttttcctctcagaactaccctctgaccaggttgagtaccgggcttga 381
||||||||||||||||| ||| | || ||||| |||||||| |||||||
Sbjct: 927121 ccttttcctctcagaaccaccttttggccaggctgagtaccaggcttga 927169
Score = 46.1 bits (23), Expect = 0.058
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||| || || ||||||||
Sbjct: 930322 acctgatcatataatgatctcttctgatcatcctt 930356
Score = 44.1 bits (22), Expect = 0.23
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 962 tccaccaccgccaccgccacca 983
||||||||||||||||||||||
Sbjct: 12625085 tccaccaccgccaccgccacca 12625106
Score = 44.1 bits (22), Expect = 0.23
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 543 ccatctgggtcttctccacctgatcgaaccacctttat 580
|||||||| ||| |||||||||||| ||||| ||||||
Sbjct: 928179 ccatctggatctgctccacctgatctaaccaactttat 928216
>gb|AQ273536.1|AQ273536 nbxb0030B09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030B09r, DNA sequence
Length = 594
Score = 89.7 bits (45), Expect = 4e-015
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 1115 ctcataagctcgttgaacctcttgaaacttgcgttctgcatccgcatcacctttatttgt 1174
|||||||||||| ||||||||||||||||| | |||||||| | |||||||||||||||
Sbjct: 446 ctcataagctcgctgaacctcttgaaacttcctctctgcatcagaatcacctttatttgt 505
Query: 1175 gtctggatggagcttctttgcaagc 1199
|| ||||||||||| || ||||||
Sbjct: 506 atccggatggagctttttcgcaagc 530
Score = 46.1 bits (23), Expect = 0.058
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1074 acctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||| || || ||||||||
Sbjct: 316 acctgatcatataatgatctcttctgatcatcctt 350
>gb|C98954.1|C98954 C98954 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3283_1A, mRNA sequence
Length = 458
Score = 89.7 bits (45), Expect = 4e-015
Identities = 54/57 (94%)
Strand = Plus / Minus
Query: 1052 tttctcatactgatcagggccaacctgatcatataatgatcttttttgttcatcctt 1108
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 62 tttctcatactgatcagggccaacctgatcatataatgatctcttctgatcatcctt 6
Score = 81.8 bits (41), Expect = 1e-012
Identities = 68/77 (88%)
Strand = Plus / Minus
Query: 939 atgttcctaaagaaatcattcattccaccaccgccaccgccaccaccaagaatatcctca 998
||||| ||||||||||||||||||||||| ||||| || || ||||||| ||||||||||
Sbjct: 178 atgtttctaaagaaatcattcattccaccgccgccgccacctccaccaaaaatatcctca 119
Query: 999 aatggatttacaaaacc 1015
|| ||||| |||||||
Sbjct: 118 aacggattgccaaaacc 102
Score = 67.9 bits (34), Expect = 2e-008
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 670 attccttcacagttttcccagaaccaccacattttgtgcaggttgattgcatcctgaa 727
||||||||||||| |||||| ||||||||| | |||||| |||||||||||||||||
Sbjct: 446 attccttcacagtcttcccattaccaccacactgtgtgcatgttgattgcatcctgaa 389
Score = 54.0 bits (27), Expect = 2e-004
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 750 aatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 367 aatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 321
>gb|AU063335.1|AU063335 AU063335 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C60866_1A, mRNA sequence
Length = 373
Score = 77.8 bits (39), Expect = 2e-011
Identities = 79/92 (85%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 636 ggcacaactttgtttcctctgcatgccttgcagaattccttcacagttttcccagaacca 695
||||||||||| ||||| |||||| ||||||||||||||| |||| ||||| ||||
Sbjct: 279 ggcacaactttccttcctttgcatgacttgcagaattccttnacag-nntcccactacca 221
Query: 696 ccacattttgtgcaggttgattgcatcctgaa 727
||||| | |||||| |||||||||||||||||
Sbjct: 220 ccacactgtgtgcatgttgattgcatcctgaa 189
Score = 60.0 bits (30), Expect = 4e-006
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 747 ataaatcctgaacccctgcaagatagacatgtttcaggtgtggttccagg 796
|||||||||||||||||||| | ||| || ||||||||| ||||||||||
Sbjct: 169 ataaatcctgaacccctgcaggctaggcaagtttcaggtttggttccagg 120
>gb|AACV01016641.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016641, whole
genome shotgun sequence
Length = 38833
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 14321 ccaccaccgccaccgccaccacca 14344
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1065_B06
Length = 113170
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 96811 ccaccaccgccaccgccaccacca 96834
>dbj|AP004182.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1199_H01
Length = 107252
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 22777 ccaccaccgccaccgccaccacca 22800
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 10954558 ccaccaccgccaccgccaccacca 10954581
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 10619023 ccaccaccgccaccgccaccacc 10619045
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 48.1 bits (24), Expect = 0.015
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacca 986
||||||||||||||||||||||||
Sbjct: 23341553 ccaccaccgccaccgccaccacca 23341576
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 23006018 ccaccaccgccaccgccaccacc 23006040
>gb|C19863.1|C19863 C19863 Rice panicle at ripening stage Oryza sativa (japonica
cultivar-group) cDNA clone E11140_2A, mRNA sequence
Length = 227
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 56 ccaccaccgccaccgccaccacc 34
>gb|AU162014.1|AU162014 AU162014 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C62801, mRNA sequence
Length = 621
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 191 ccaccaccgccaccgccaccacc 213
>gb|AU197541.1|AU197541 AU197541 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C10374, mRNA sequence
Length = 441
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 41 ccaccaccgccaccgccaccacc 63
>gb|CB638412.1|CB638412 OSJNEa06K19.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa06K19 5', mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 26 caccaccgccaccgccaccacca 4
>gb|CB638464.1|CB638464 OSJNEa06M15.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa06M15 5', mRNA sequence
Length = 573
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 26 caccaccgccaccgccaccacca 4
>gb|CB643170.1|CB643170 OSJNEb03L12.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03L12 3', mRNA sequence
Length = 658
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 348 ccaccaccgccaccgccaccacc 326
>gb|CB668858.1|CB668858 OSJNEd16O13.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd16O13 3', mRNA sequence
Length = 771
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 334 ccaccaccgccaccgccaccacc 312
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0482D04
Length = 144583
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 13917 ccaccaccgccaccgccaccacc 13895
>dbj|AK066132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051M20, full
insert sequence
Length = 3032
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 2470 ccaccaccgccaccgccaccacc 2492
>dbj|AK101782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full
insert sequence
Length = 2821
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 222 caccaccgccaccgccaccacca 200
>dbj|AK103764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143H08, full
insert sequence
Length = 2135
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 1655 ccaccaccgccaccgccaccacc 1677
>emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa0016A01 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 150703
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 94664 ccaccaccgccaccgccaccacc 94642
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1121_A05
Length = 172668
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 81232 ccaccaccgccaccgccaccacc 81254
>ref|NT_107148.1| Oryza sativa (japonica cultivar-group)
Length = 1822333
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 483784 ccaccaccgccaccgccaccacc 483762
>gb|AACV01002969.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002969, whole
genome shotgun sequence
Length = 26593
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 13348 ccaccaccgccaccgccaccacc 13326
>gb|AACV01010557.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010557, whole
genome shotgun sequence
Length = 69660
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 22499 caccaccgccaccgccaccacca 22521
>gb|AACV01024640.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024640, whole
genome shotgun sequence
Length = 33288
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 25153 ccaccaccgccaccgccaccacc 25131
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 40614572 ccaccaccgccaccgccaccacc 40614550
>ref|XM_463667.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1638
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 1600 ccaccaccgccaccgccaccacc 1622
>ref|XM_466286.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 369
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 152 ccaccaccgccaccgccaccacc 130
>ref|XM_474061.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2298
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 54 caccaccgccaccgccaccacca 32
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 242866 ccaccaccgccaccgccaccacc 242844
>ref|NT_107201.1| Oryza sativa (japonica cultivar-group)
Length = 2893592
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 24602 caccaccgccaccgccaccacca 24624
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0020C11
Length = 163328
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 72513 ccaccaccgccaccgccaccacc 72535
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 2661828 ccaccaccgccaccgccaccacc 2661850
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1033B05
Length = 138882
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 95526 ccaccaccgccaccgccaccacc 95504
>gb|CH401274.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000111 genomic
scaffold, whole genome shotgun sequence
Length = 3984395
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 3494777 ccaccaccgccaccgccaccacc 3494755
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 964 caccaccgccaccgccaccacca 986
|||||||||||||||||||||||
Sbjct: 10313370 caccaccgccaccgccaccacca 10313392
Score = 44.1 bits (22), Expect = 0.23
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccaccaa 987
||||||||||||||||||||||
Sbjct: 5274489 ccaccgccaccgccaccaccaa 5274510
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 46.1 bits (23), Expect = 0.058
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccaccacc 985
|||||||||||||||||||||||
Sbjct: 14812951 ccaccaccgccaccgccaccacc 14812929
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,040,694
Number of Sequences: 438736
Number of extensions: 3040694
Number of successful extensions: 32721
Number of sequences better than 0.5: 77
Number of HSP's better than 0.5 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30825
Number of HSP's gapped (non-prelim): 1882
length of query: 1565
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1544
effective length of database: 2,791,206,460
effective search space: 4309622774240
effective search space used: 4309622774240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)