BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455820.2.1
(1312 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA... 795 0.0
dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA... 795 0.0
ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA 472 e-130
ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-... 472 e-130
gb|CA999869.1|CA999869 S345R_D12 Rice cold stress germinati... 464 e-128
dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA... 464 e-128
dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA... 464 e-128
gb|AU184626.1|AU184626 AU184626 Rice root Oryza sativa (jap... 426 e-116
gb|D39098.1|D39098 RICR1956A Rice root Oryza sativa (japoni... 341 6e-091
gb|CV725196.1|CV725196 14Salt--02-C14.g1 Salt treated rice ... 256 3e-065
gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) c... 230 2e-057
gb|AACV01023823.1| Oryza sativa (japonica cultivar-group) c... 230 2e-057
gb|CH401271.1| Oryza sativa (japonica cultivar-group) chrom... 230 2e-057
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 230 2e-057
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 230 2e-057
gb|AC133008.3| Oryza sativa (japonica cultivar-group) chrom... 230 2e-057
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 230 2e-057
gb|D48602.1|D48602 RICS14920A Rice green shoot Oryza sativa... 200 1e-048
gb|CV723301.1|CV723301 root--03-C10.g1 Rice root lambda pha... 200 1e-048
gb|CV723868.1|CV723868 root--05-A13.g1 Rice root lambda pha... 200 1e-048
gb|D40051.1|D40051 RICS1779A Rice shoot Oryza sativa (japon... 184 8e-044
gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (jap... 168 5e-039
gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (jap... 167 2e-038
dbj|AP005869.3| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) c... 157 2e-035
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 157 2e-035
gb|CH401218.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 157 2e-035
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 157 2e-035
gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (ja... 121 1e-024
gb|CF324946.1|CF324946 JMT1--01-O10.g1 AtJMT-overexpressing... 82 9e-013
dbj|AG212000.1| Oryza sativa (japonica cultivar-group) DNA,... 54 2e-004
>dbj|AK060049.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H12, full
insert sequence
Length = 1173
Score = 795 bits (401), Expect = 0.0
Identities = 671/761 (88%)
Strand = Plus / Minus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 923 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 864
Query: 383 tgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctgactttg 442
|||||||||| |||| |||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 863 tgtccgtgccaaacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttgg 804
Query: 443 tgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggcaggaaat 502
|||| |||||||||||||| |||||||| ||||| ||||| |||||||| |||| |||||
Sbjct: 803 tgtagagcacacggtgatgatagtcatgaaagtcggagcctccatacagtggcaagaaat 744
Query: 503 ttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaaccctca 562
||||||||||||||||||| || || || ||||||||||||||||||||||| |||||||
Sbjct: 743 ttgatgggctccatgggaaatggtatccactgtgagcttcaactgtctccaataccctca 684
Query: 563 acaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaacaactg 622
|||||||||||||||| || ||||| | || || ||||| || || |||||||||| ||
Sbjct: 683 acaccatccacagccatagagtgaacaagtgcggaccagtgagggccggaccaacaattg 624
Query: 623 gggcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagg 682
|||||| || ||||||||||||||||| |||||||||||||| || || || |||||||
Sbjct: 623 tggcgaacccaaggaacaaaatttcagcagggtgggcatattctgaagtcaagccaaagg 564
Query: 683 gtgtggcgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatg 742
|||| || || |||||||| ||||||||||| || |||||||||||||| || |||| ||
Sbjct: 563 gtgtagcatattcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtg 504
Query: 743 ccctgtgcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagata 802
|||| || |||||||| |||||||||||||| || |||||||| |||||||||||||| |
Sbjct: 503 ccctatgtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaa 444
Query: 803 caacaaccgaccaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcag 862
||| ||||| ||| ||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 443 caataaccgtccagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcag 384
Query: 863 gatacgagaaaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaaga 922
| || || |||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |
Sbjct: 383 ggtaggataaaaccattacaggcaagttcacacagacatggtacagaatgagacgcagca 324
Query: 923 cacatctgttttggtaagcagaggtgttgctcttcttctggatcttgtacttggcgaaga 982
||||||| || ||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 cacatctattctggtaagaaggggtattgctcttcttctggatcttgtacttggcgaaga 264
Query: 983 gtccgaagcgctcgaagaggagggaggggaggccggagaggaagaagacggtctcgtgga 1042
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ggccgaagcgctcgaagaggagggaggggaggccggagaggaagaagacggtctcgtgga 204
Query: 1043 gcaggaaggtgacgacggtggcgagctggaactcggtgaag 1083
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaggaaggtgacgacggtggcgagctggaactcggtgaag 163
>dbj|AK102938.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114J20, full
insert sequence
Length = 1223
Score = 795 bits (401), Expect = 0.0
Identities = 671/761 (88%)
Strand = Plus / Minus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 879 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 820
Query: 383 tgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctgactttg 442
|||||||||| |||| |||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 819 tgtccgtgccaaacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttgg 760
Query: 443 tgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggcaggaaat 502
|||| |||||||||||||| |||||||| ||||| ||||| |||||||| |||| |||||
Sbjct: 759 tgtagagcacacggtgatgatagtcatgaaagtcggagcctccatacagtggcaagaaat 700
Query: 503 ttgatgggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaaccctca 562
||||||||||||||||||| || || || ||||||||||||||||||||||| |||||||
Sbjct: 699 ttgatgggctccatgggaaatggtatccactgtgagcttcaactgtctccaataccctca 640
Query: 563 acaccatccacagccacagggtgaagagatgagggccagtaagagcaggaccaacaactg 622
|||||||||||||||| || ||||| | || || ||||| || || |||||||||| ||
Sbjct: 639 acaccatccacagccatagagtgaacaagtgcggaccagtgagggccggaccaacaattg 580
Query: 623 gggcgaatcccaggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagg 682
|||||| || ||||||||||||||||| |||||||||||||| || || || |||||||
Sbjct: 579 tggcgaacccaaggaacaaaatttcagcagggtgggcatattctgaagtcaagccaaagg 520
Query: 683 gtgtggcgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatg 742
|||| || || |||||||| ||||||||||| || |||||||||||||| || |||| ||
Sbjct: 519 gtgtagcatattcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtg 460
Query: 743 ccctgtgcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagata 802
|||| || |||||||| |||||||||||||| || |||||||| |||||||||||||| |
Sbjct: 459 ccctatgtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaa 400
Query: 803 caacaaccgaccaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcag 862
||| ||||| ||| ||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct: 399 caataaccgtccagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcag 340
Query: 863 gatacgagaaaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaaga 922
| || || |||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |
Sbjct: 339 ggtaggataaaaccattacaggcaagttcacacagacatggtacagaatgagacgcagca 280
Query: 923 cacatctgttttggtaagcagaggtgttgctcttcttctggatcttgtacttggcgaaga 982
||||||| || ||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 279 cacatctattctggtaagaaggggtattgctcttcttctggatcttgtacttggcgaaga 220
Query: 983 gtccgaagcgctcgaagaggagggaggggaggccggagaggaagaagacggtctcgtgga 1042
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggccgaagcgctcgaagaggagggaggggaggccggagaggaagaagacggtctcgtgga 160
Query: 1043 gcaggaaggtgacgacggtggcgagctggaactcggtgaag 1083
| |||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggaggaaggtgacgacggtggcgagctggaactcggtgaag 119
>ref|XM_476351.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1146
Score = 472 bits (238), Expect = e-130
Identities = 613/738 (83%)
Strand = Plus / Minus
Query: 345 ttctttctcctcaatggtctttgccttgcgataatccttgtccgtgccgaacaaccagtc 404
|||||||||||| | || ||||| |||||| ||||| || || || || |||| ||||||
Sbjct: 851 ttctttctcctctagggcctttgtcttgcggtaatctttatcagtcccaaacagccagtc 792
Query: 405 catgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtgatggta 464
|||||| | || || || | || ||||| ||||| ||||| || ||||||||||| ||
Sbjct: 791 catgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacacggtgatgata 732
Query: 465 gtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgggaagtg 524
||||||||| || | ||||||||||| |||| |||||| || |||||||||||||||||
Sbjct: 731 gtcatggaattcagcgccgccatacaatggcaagaaattggacgggctccatgggaagtg 672
Query: 525 atagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagccacagggt 584
||||| |||||||| |||||||||||||| |||||||| |||||||||| ||| || ||
Sbjct: 671 gtagccactgtgagcctcaactgtctccaagaccctcaagaccatccacacccagagagt 612
Query: 585 gaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaacaaaat 644
|||||| |||||||||||||| ||||| || | || | || || |||| ||| | |||
Sbjct: 611 gaagaggtgagggccagtaagggcagggccggccacggtagcaaagcccaagaatagaat 552
Query: 645 ttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatggtggac 704
||||| ||||| |||||||| ||||||| |||||||||||||| || |||||||||||
Sbjct: 551 ctcagcagggtgagcatattcagatgttaggccaaagggtgtggcatattcatggtggac 492
Query: 705 gctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatat 764
||||||||| || | ||| |||||||| ||||||| |||||| |||||||| ||||||||
Sbjct: 491 gctgtgaacatgctggtacagccatttggtatgcagtgccctatgcccccagtagaatat 432
Query: 765 aaaatcctcaaggacaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaa 824
||||||||||| ||||| |||| || ||||| || || ||||| | ||| || ||||
Sbjct: 431 gaaatcctcaagcacaaaaaagaagagcacttgggagacgacaactgtccagtgaggcag 372
Query: 825 aggaagagagctcctgagacccatgaatttgaaggcaggatacgagaaaatcatgacagg 884
||||| | |||||| | |||||||||||||||| |||| || ||||| ||| |||
Sbjct: 371 cggaagggtgctcctcaagcccatgaatttgaaggtgcgatatgataaaatggtgagagg 312
Query: 885 caggttcacacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcaga 944
|| || || || ||||||||||||| ||| |||| ||||||||||| |||||| | |
Sbjct: 311 gagattgacgcagacatggtagagaacgagacgcactacacatctgttctggtaatcggg 252
Query: 945 ggtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggag 1004
|| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct: 251 tgtattgctcttcttctggatcttgtacttggagaagaggccgaggcgctcgaagaggag 192
Query: 1005 ggaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggc 1064
||||||||||||||||||||||||||| |||||||||| ||||||||| ||| || |||
Sbjct: 191 agaggggaggccggagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggc 132
Query: 1065 gagctggaactcggtgaa 1082
|||||||||||| ||||
Sbjct: 131 cagctggaactcgctgaa 114
>ref|XM_506129.1| PREDICTED Oryza sativa (japonica cultivar-group), B1026C12.22 mRNA
Length = 1337
Score = 472 bits (238), Expect = e-130
Identities = 613/738 (83%)
Strand = Plus / Minus
Query: 345 ttctttctcctcaatggtctttgccttgcgataatccttgtccgtgccgaacaaccagtc 404
|||||||||||| | || ||||| |||||| ||||| || || || || |||| ||||||
Sbjct: 850 ttctttctcctctagggcctttgtcttgcggtaatctttatcagtcccaaacagccagtc 791
Query: 405 catgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtgatggta 464
|||||| | || || || | || ||||| ||||| ||||| || ||||||||||| ||
Sbjct: 790 catgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacacggtgatgata 731
Query: 465 gtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgggaagtg 524
||||||||| || | ||||||||||| |||| |||||| || |||||||||||||||||
Sbjct: 730 gtcatggaattcagcgccgccatacaatggcaagaaattggacgggctccatgggaagtg 671
Query: 525 atagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagccacagggt 584
||||| |||||||| |||||||||||||| |||||||| |||||||||| ||| || ||
Sbjct: 670 gtagccactgtgagcctcaactgtctccaagaccctcaagaccatccacacccagagagt 611
Query: 585 gaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaacaaaat 644
|||||| |||||||||||||| ||||| || | || | || || |||| ||| | |||
Sbjct: 610 gaagaggtgagggccagtaagggcagggccggccacggtagcaaagcccaagaatagaat 551
Query: 645 ttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatggtggac 704
||||| ||||| |||||||| ||||||| |||||||||||||| || |||||||||||
Sbjct: 550 ctcagcagggtgagcatattcagatgttaggccaaagggtgtggcatattcatggtggac 491
Query: 705 gctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatat 764
||||||||| || | ||| |||||||| ||||||| |||||| |||||||| ||||||||
Sbjct: 490 gctgtgaacatgctggtacagccatttggtatgcagtgccctatgcccccagtagaatat 431
Query: 765 aaaatcctcaaggacaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaa 824
||||||||||| ||||| |||| || ||||| || || ||||| | ||| || ||||
Sbjct: 430 gaaatcctcaagcacaaaaaagaagagcacttgggagacgacaactgtccagtgaggcag 371
Query: 825 aggaagagagctcctgagacccatgaatttgaaggcaggatacgagaaaatcatgacagg 884
||||| | |||||| | |||||||||||||||| |||| || ||||| ||| |||
Sbjct: 370 cggaagggtgctcctcaagcccatgaatttgaaggtgcgatatgataaaatggtgagagg 311
Query: 885 caggttcacacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcaga 944
|| || || || ||||||||||||| ||| |||| ||||||||||| |||||| | |
Sbjct: 310 gagattgacgcagacatggtagagaacgagacgcactacacatctgttctggtaatcggg 251
Query: 945 ggtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggag 1004
|| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct: 250 tgtattgctcttcttctggatcttgtacttggagaagaggccgaggcgctcgaagaggag 191
Query: 1005 ggaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggc 1064
||||||||||||||||||||||||||| |||||||||| ||||||||| ||| || |||
Sbjct: 190 agaggggaggccggagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggc 131
Query: 1065 gagctggaactcggtgaa 1082
|||||||||||| ||||
Sbjct: 130 cagctggaactcgctgaa 113
>gb|CA999869.1|CA999869 S345R_D12 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 486
Score = 464 bits (234), Expect = e-128
Identities = 423/486 (87%)
Strand = Plus / Minus
Query: 509 ggctccatgggaagtgatagccgctgtgagcttcaactgtctccaaaaccctcaacacca 568
||||||||||||| || || || ||||||||||||||||||||||| |||||||||||||
Sbjct: 486 ggctccatgggaaatggtatccactgtgagcttcaactgtctccaataccctcaacacca 427
Query: 569 tccacagccacagggtgaagagatgagggccagtaagagcaggaccaacaactggggcga 628
|||||||||| || ||||| | || || ||||| || || |||||||||| || |||||
Sbjct: 426 tccacagccatagagtgaacaagtgcggaccagtgagggccggaccaacaattgtggcga 367
Query: 629 atcccaggaacaaaatttcagctgggtgggcatattccgatgttaaaccaaagggtgtgg 688
| || ||||||||||||||||| |||||||||||||| || || || ||||||||||| |
Sbjct: 366 acccaaggaacaaaatttcagcagggtgggcatattctgaagtcaagccaaagggtgtag 307
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
| || |||||||| ||||||||||| || |||||||||||||| || |||| |||||| |
Sbjct: 306 catattcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtgccctat 247
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaa 808
| |||||||| |||||||||||||| || |||||||| |||||||||||||| |||| ||
Sbjct: 246 gtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaacaataa 187
Query: 809 ccgaccaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacg 868
||| ||| ||||||| ||||||||||||||| || |||||||||||||||||||| || |
Sbjct: 186 ccgtccagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcagggtagg 127
Query: 869 agaaaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatc 928
| |||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |||||||
Sbjct: 126 ataaaaccattacaggcaagttcacacagacatggtacagaatgagacgcagcacacatc 67
Query: 929 tgttttggtaagcagaggtgttgctcttcttctggatcttgtacttggcgaagagtccga 988
| || ||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 66 tattctggtaagaaggggtattgctcttcttctggatcttgtacttggcgaagaggccga 7
Query: 989 agcgct 994
||||||
Sbjct: 6 agcgct 1
>dbj|AK059667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F03, full
insert sequence
Length = 1146
Score = 464 bits (234), Expect = e-128
Identities = 612/738 (82%)
Strand = Plus / Minus
Query: 345 ttctttctcctcaatggtctttgccttgcgataatccttgtccgtgccgaacaaccagtc 404
|||||||||||| | || ||||| |||||| ||||| || || || || |||| ||||||
Sbjct: 851 ttctttctcctctagggcctttgtcttgcggtaatctttatcagtcccaaacagccagtc 792
Query: 405 catgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtgatggta 464
|||||| | || || || | || ||||| ||||| ||||| || ||||||||||| ||
Sbjct: 791 catgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacacggtgatgata 732
Query: 465 gtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgggaagtg 524
||||||||| || | ||||||||||| |||| |||||| || |||||||||||||||||
Sbjct: 731 gtcatggaattcagcgccgccatacaatggcaagaaattggacgggctccatgggaagtg 672
Query: 525 atagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagccacagggt 584
||||| |||||||| |||||||||||||| |||||||| |||||||||| ||| || ||
Sbjct: 671 gtagccactgtgagcctcaactgtctccaagaccctcaagaccatccacacccagagagt 612
Query: 585 gaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaacaaaat 644
|||||| |||||||||||||| ||||| || | || | || || |||| ||| | |||
Sbjct: 611 gaagaggtgagggccagtaagggcagggccggccacggtagcaaagcccaagaatagaat 552
Query: 645 ttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatggtggac 704
||||| ||||| |||||||| ||||||| |||||||||||||| || |||||||||||
Sbjct: 551 ctcagcagggtgagcatattcagatgttaggccaaagggtgtggcatattcatggtggac 492
Query: 705 gctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatat 764
||||||||| || | ||| |||||||| ||||||| |||||| |||||||| ||||||||
Sbjct: 491 gctgtgaacatgctggtacagccatttggtatgcagtgccctatgcccccagtagaatat 432
Query: 765 aaaatcctcaaggacaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaa 824
||||||||||| ||||| |||| || ||||| || || ||||| | ||| || ||||
Sbjct: 431 gaaatcctcaagcacaaaaaagaagagcacttgggagacgacaactgtccagtgaggcag 372
Query: 825 aggaagagagctcctgagacccatgaatttgaaggcaggatacgagaaaatcatgacagg 884
||||| | |||||| | ||||||| |||||||| |||| || ||||| ||| |||
Sbjct: 371 cggaagggtgctcctcaagcccatgagtttgaaggtgcgatatgataaaatggtgagagg 312
Query: 885 caggttcacacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcaga 944
|| || || || ||||||||||||| ||| |||| ||||||||||| |||||| | |
Sbjct: 311 gagattgacgcagacatggtagagaacgagacgcactacacatctgttctggtaatcggg 252
Query: 945 ggtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggag 1004
|| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct: 251 tgtattgctcttcttctggatcttgtacttggagaagaggccgaggcgctcgaagaggag 192
Query: 1005 ggaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggc 1064
||||||||||||||||||||||||||| |||||||||| ||||||||| ||| || |||
Sbjct: 191 agaggggaggccggagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggc 132
Query: 1065 gagctggaactcggtgaa 1082
|||||||||||| ||||
Sbjct: 131 cagctggaactcgctgaa 114
>dbj|AK071749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112L07, full
insert sequence
Length = 1337
Score = 464 bits (234), Expect = e-128
Identities = 612/738 (82%)
Strand = Plus / Minus
Query: 345 ttctttctcctcaatggtctttgccttgcgataatccttgtccgtgccgaacaaccagtc 404
|||||||||||| | || ||||| |||||| ||||| || || || || |||| ||||||
Sbjct: 850 ttctttctcctctagggcctttgtcttgcggtaatctttatcagtcccaaacagccagtc 791
Query: 405 catgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtgatggta 464
|||||| | || || || | || ||||| | ||| ||||| || ||||||||||| ||
Sbjct: 790 catgtagatgaaggtcgacgagtaattcccaggcttggtgtagagaacacggtgatgata 731
Query: 465 gtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgggaagtg 524
||||||||| || | ||||||||||| |||| |||||| || |||||||||||||||||
Sbjct: 730 gtcatggaattcagcgccgccatacaatggcaagaaattggacgggctccatgggaagtg 671
Query: 525 atagccgctgtgagcttcaactgtctccaaaaccctcaacaccatccacagccacagggt 584
||||| |||||||| |||||||||||||| |||||||| |||||||||| ||| || ||
Sbjct: 670 gtagccactgtgagcctcaactgtctccaagaccctcaagaccatccacacccagagagt 611
Query: 585 gaagagatgagggccagtaagagcaggaccaacaactggggcgaatcccaggaacaaaat 644
|||||| |||||||||||||| ||||| || | || | || || |||| ||| | |||
Sbjct: 610 gaagaggtgagggccagtaagggcagggccggccacggtagcaaagcccaagaatagaat 551
Query: 645 ttcagctgggtgggcatattccgatgttaaaccaaagggtgtggcgtactcatggtggac 704
||||| ||||| |||||||| ||||||| |||||||||||||| || |||||||||||
Sbjct: 550 ctcagcagggtgagcatattcagatgttaggccaaagggtgtggcatattcatggtggac 491
Query: 705 gctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatat 764
||||||||| || | ||| |||||||| ||||||| |||||| |||||||| ||||||||
Sbjct: 490 gctgtgaacatgctggtacagccatttggtatgcagtgccctatgcccccagtagaatat 431
Query: 765 aaaatcctcaaggacaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaa 824
||||||||||| ||||| |||| || ||||| || || ||||| | ||| || ||||
Sbjct: 430 gaaatcctcaagcacaaaaaagaagagcacttgggagacgacaactgtccagtgaggcag 371
Query: 825 aggaagagagctcctgagacccatgaatttgaaggcaggatacgagaaaatcatgacagg 884
||||| | |||||| | |||||||||||||||| |||| || ||||| ||| |||
Sbjct: 370 cggaagggtgctcctcaagcccatgaatttgaaggtgcgatatgataaaatggtgagagg 311
Query: 885 caggttcacacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcaga 944
|| || || || ||||||||||||| ||| |||| ||||||||||| |||||| | |
Sbjct: 310 gagattgacgcagacatggtagagaacgagacgcactacacatctgttctggtaatcggg 251
Query: 945 ggtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggag 1004
|| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct: 250 tgtattgctcttcttctggatcttgtacttggagaagaggccgaggcgctcgaagaggag 191
Query: 1005 ggaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggc 1064
||||||||||||||||||||||||||| |||||||||| ||||||||| ||| || |||
Sbjct: 190 agaggggaggccggagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggc 131
Query: 1065 gagctggaactcggtgaa 1082
|||||||||||| ||||
Sbjct: 130 cagctggaactcgctgaa 113
>gb|AU184626.1|AU184626 AU184626 Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R3165, mRNA sequence
Length = 466
Score = 426 bits (215), Expect = e-116
Identities = 322/358 (89%)
Strand = Plus / Minus
Query: 726 ccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctcaaggacaaagta 785
|||||| || |||| |||||| || |||||||| |||||||||||||| || ||||||||
Sbjct: 466 ccatttggtgtgcagtgccctatgtccccaataaaatataaaatcctcgagtacaaagta 407
Query: 786 gaaaagaacttgagatacaacaaccgaccaatgtggcaaaggaagagagctcctgagacc 845
|||||||||||||| ||| | ||| ||| ||||||| ||||||||||||||| || ||
Sbjct: 406 aaaaagaacttgagaancaatacccgtccagtgtggcagaggaagagagctcctcaggcc 347
Query: 846 catgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatggta 905
|||||||||||||||||| || || |||| ||| ||||||| ||||||||| ||||||||
Sbjct: 346 catgaatttgaaggcagggtaggataaaaccattacaggcaagttcacacagacatggta 287
Query: 906 gagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctggat 965
|||||||| |||| |||||||| || ||||||| || ||| |||||||||||||||||
Sbjct: 286 cagaatgagacgcagcacacatctattctggtaagaaggggtattgctcttcttctggat 227
Query: 966 cttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccggagaggaa 1025
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccggagaggaa 167
Query: 1026 gaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggtgaag 1083
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggtgaag 109
>gb|D39098.1|D39098 RICR1956A Rice root Oryza sativa (japonica cultivar-group) cDNA, mRNA
sequence
Length = 370
Score = 341 bits (172), Expect = 6e-091
Identities = 239/260 (91%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 825 aggaagagagctcctgagaccc-atgaatttgaaggcaggatacgagaaaatcatgacag 883
||||||||||||||| || ||| ||||||||||||||||| || || |||| ||| ||||
Sbjct: 367 aggaagagagctcctaaggccccatgaatttgaaggcagggtaggataaaaccattacag 308
Query: 884 gcaggttcacacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcag 943
||| ||||||||| |||||||| |||||||| |||| |||||||| || ||||||| ||
Sbjct: 307 gcaagttcacacagacatggtacagaatgagacgcagcacacatctattctggtaagaag 248
Query: 944 aggtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagagga 1003
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 247 gggtattgctcttcttctggatcttgtacttggcgaagaggccgaagcgctcgaagagga 188
Query: 1004 gggaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtgg 1063
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 187 gggaggggaggccggagaggaagaagacggtctcgtggaggaggaaggtgacgacggtgg 128
Query: 1064 cgagctggaactcggtgaag 1083
||||||||||||||||||||
Sbjct: 127 cgagctggaactcggtgaag 108
>gb|CV725196.1|CV725196 14Salt--02-C14.g1 Salt treated rice leaf lambda phage cDNA library
(14Salt) Oryza sativa (japonica cultivar-group) cDNA
clone 14Salt--02-C14, mRNA sequence
Length = 491
Score = 256 bits (129), Expect = 3e-065
Identities = 315/377 (83%)
Strand = Plus / Minus
Query: 706 ctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatata 765
|||||||| || | ||| |||||||| ||||||| |||||| |||||||| ||||||||
Sbjct: 491 ctgtgaacatgctggtacagccatttggtatgcagtgccctatgcccccagtagaatatg 432
Query: 766 aaatcctcaaggacaaagtagaaaagaacttgagatacaacaaccgaccaatgtggcaaa 825
||||||||||| ||||| |||| || ||||| || || ||||| | ||| || ||||
Sbjct: 431 aaatcctcaagcacaaaaaagaagagcacttgggagacgacaactgtccagtgaggcagc 372
Query: 826 ggaagagagctcctgagacccatgaatttgaaggcaggatacgagaaaatcatgacaggc 885
||||| | |||||| | |||||||||||||||| |||| || ||||| ||| |||
Sbjct: 371 ggaagggtgctcctcaagcccatgaatttgaaggtgcgatatgataaaatggtgagaggg 312
Query: 886 aggttcacacatacatggtagagaatgaggcgcaagacacatctgttttggtaagcagag 945
|| || || || ||||||||||||| ||| |||| ||||||||||| |||||| | |
Sbjct: 311 agattgacgcagacatggtagagaacgagacgcactacacatctgttctggtaatcgggt 252
Query: 946 gtgttgctcttcttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagg 1005
|| |||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct: 251 gtattgctcttcttctggatcttgtacttggagaagaggccgaggcgctcgaagaggaga 192
Query: 1006 gaggggaggccggagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcg 1065
||||||||||||||||||||||||||| |||||||||| ||||||||| ||| || |||
Sbjct: 191 gaggggaggccggagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggcc 132
Query: 1066 agctggaactcggtgaa 1082
|||||||||||| ||||
Sbjct: 131 agctggaactcgctgaa 115
>gb|AACV01023822.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023822, whole
genome shotgun sequence
Length = 11245
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10438 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 10497
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10498 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 10557
Query: 1080 gaag 1083
||||
Sbjct: 10558 gaag 10561
Score = 196 bits (99), Expect = 2e-047
Identities = 177/203 (87%)
Strand = Plus / Plus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| |||| |||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 8274 ccatacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttca 8333
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
||||||||||| ||||||||||||||||||||||| || ||||| | || || |||||
Sbjct: 8334 actgtctccaataccctcaacaccatccacagccatagagtgaacaagtgcggaccagtg 8393
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
|| || |||||||||| || |||||| || ||||||||||||||||| ||||||||||||
Sbjct: 8394 agggccggaccaacaattgtggcgaacccaaggaacaaaatttcagcagggtgggcatat 8453
Query: 664 tccgatgttaaaccaaagggtgt 686
|| || || || |||||||||||
Sbjct: 8454 tctgaagtcaagccaaagggtgt 8476
Score = 141 bits (71), Expect = 1e-030
Identities = 131/151 (86%)
Strand = Plus / Plus
Query: 812 accaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgaga 871
|||| ||||||| ||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 8761 accagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcagggtaggata 8820
Query: 872 aaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgt 931
||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |||||||| |
Sbjct: 8821 aaaccattacaggcaagttcacacagacatggtacagaatgagacgcagcacacatctat 8880
Query: 932 tttggtaagcagaggtgttgctcttcttctg 962
| ||||||| || ||| ||||||||||||||
Sbjct: 8881 tctggtaagaaggggtattgctcttcttctg 8911
Score = 133 bits (67), Expect = 3e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
||||||||||||| ||||||||||| || |||||||||||||| || |||| |||||| |
Sbjct: 8560 cgtactcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtgccctat 8619
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaa 808
| |||||||| |||||||||||||| || |||||||| |||||||||||||| |||| ||
Sbjct: 8620 gtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaacaataa 8679
Query: 809 ccg 811
|||
Sbjct: 8680 ccg 8682
Score = 87.7 bits (44), Expect = 1e-014
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||
Sbjct: 8102 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 8161
Query: 458 gatggtagtcatggaagtccgagc 481
|||| |||||||| ||||| ||||
Sbjct: 8162 gatgatagtcatgaaagtcggagc 8185
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 7945 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 8004
Query: 383 tgtccgtgccgaaca 397
|||||||||| ||||
Sbjct: 8005 tgtccgtgccaaaca 8019
>gb|AACV01023823.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023823, whole
genome shotgun sequence
Length = 1468
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Minus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 843 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 784
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 783 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 724
Query: 1080 gaag 1083
||||
Sbjct: 723 gaag 720
>gb|CH401271.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000108
genomic scaffold, whole genome shotgun sequence
Length = 327658
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 299117 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 299176
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 299177 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 299236
Query: 1080 gaag 1083
||||
Sbjct: 299237 gaag 299240
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 297634 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 297693
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 297694 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 297753
Query: 1080 gaag 1083
||||
Sbjct: 297754 gaag 297757
Score = 196 bits (99), Expect = 2e-047
Identities = 177/203 (87%)
Strand = Plus / Plus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| |||| |||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 295470 ccatacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttca 295529
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
||||||||||| ||||||||||||||||||||||| || ||||| | || || |||||
Sbjct: 295530 actgtctccaataccctcaacaccatccacagccatagagtgaacaagtgcggaccagtg 295589
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
|| || |||||||||| || |||||| || ||||||||||||||||| ||||||||||||
Sbjct: 295590 agggccggaccaacaattgtggcgaacccaaggaacaaaatttcagcagggtgggcatat 295649
Query: 664 tccgatgttaaaccaaagggtgt 686
|| || || || |||||||||||
Sbjct: 295650 tctgaagtcaagccaaagggtgt 295672
Score = 141 bits (71), Expect = 1e-030
Identities = 131/151 (86%)
Strand = Plus / Plus
Query: 812 accaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgaga 871
|||| ||||||| ||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 295957 accagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcagggtaggata 296016
Query: 872 aaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgt 931
||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |||||||| |
Sbjct: 296017 aaaccattacaggcaagttcacacagacatggtacagaatgagacgcagcacacatctat 296076
Query: 932 tttggtaagcagaggtgttgctcttcttctg 962
| ||||||| || ||| ||||||||||||||
Sbjct: 296077 tctggtaagaaggggtattgctcttcttctg 296107
Score = 133 bits (67), Expect = 3e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
||||||||||||| ||||||||||| || |||||||||||||| || |||| |||||| |
Sbjct: 295756 cgtactcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtgccctat 295815
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaa 808
| |||||||| |||||||||||||| || |||||||| |||||||||||||| |||| ||
Sbjct: 295816 gtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaacaataa 295875
Query: 809 ccg 811
|||
Sbjct: 295876 ccg 295878
Score = 87.7 bits (44), Expect = 1e-014
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||
Sbjct: 295298 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 295357
Query: 458 gatggtagtcatggaagtccgagc 481
|||| |||||||| ||||| ||||
Sbjct: 295358 gatgatagtcatgaaagtcggagc 295381
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 295141 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 295200
Query: 383 tgtccgtgccgaaca 397
|||||||||| ||||
Sbjct: 295201 tgtccgtgccaaaca 295215
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22565008 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 22565067
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22565068 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 22565127
Query: 1080 gaag 1083
||||
Sbjct: 22565128 gaag 22565131
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22563525 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 22563584
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22563585 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 22563644
Query: 1080 gaag 1083
||||
Sbjct: 22563645 gaag 22563648
Score = 196 bits (99), Expect = 2e-047
Identities = 177/203 (87%)
Strand = Plus / Plus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| |||| |||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 22561361 ccatacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttca 22561420
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
||||||||||| ||||||||||||||||||||||| || ||||| | || || |||||
Sbjct: 22561421 actgtctccaataccctcaacaccatccacagccatagagtgaacaagtgcggaccagtg 22561480
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
|| || |||||||||| || |||||| || ||||||||||||||||| ||||||||||||
Sbjct: 22561481 agggccggaccaacaattgtggcgaacccaaggaacaaaatttcagcagggtgggcatat 22561540
Query: 664 tccgatgttaaaccaaagggtgt 686
|| || || || |||||||||||
Sbjct: 22561541 tctgaagtcaagccaaagggtgt 22561563
Score = 141 bits (71), Expect = 1e-030
Identities = 131/151 (86%)
Strand = Plus / Plus
Query: 812 accaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgaga 871
|||| ||||||| ||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 22561848 accagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcagggtaggata 22561907
Query: 872 aaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgt 931
||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |||||||| |
Sbjct: 22561908 aaaccattacaggcaagttcacacagacatggtacagaatgagacgcagcacacatctat 22561967
Query: 932 tttggtaagcagaggtgttgctcttcttctg 962
| ||||||| || ||| ||||||||||||||
Sbjct: 22561968 tctggtaagaaggggtattgctcttcttctg 22561998
Score = 133 bits (67), Expect = 3e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
||||||||||||| ||||||||||| || |||||||||||||| || |||| |||||| |
Sbjct: 22561647 cgtactcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtgccctat 22561706
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaa 808
| |||||||| |||||||||||||| || |||||||| |||||||||||||| |||| ||
Sbjct: 22561707 gtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaacaataa 22561766
Query: 809 ccg 811
|||
Sbjct: 22561767 ccg 22561769
Score = 87.7 bits (44), Expect = 1e-014
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||
Sbjct: 22561189 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 22561248
Query: 458 gatggtagtcatggaagtccgagc 481
|||| |||||||| ||||| ||||
Sbjct: 22561249 gatgatagtcatgaaagtcggagc 22561272
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 22561032 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 22561091
Query: 383 tgtccgtgccgaaca 397
|||||||||| ||||
Sbjct: 22561092 tgtccgtgccaaaca 22561106
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 28325911 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 28325970
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 28325971 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 28326030
Query: 1080 gaag 1083
||||
Sbjct: 28326031 gaag 28326034
Score = 196 bits (99), Expect = 2e-047
Identities = 177/203 (87%)
Strand = Plus / Plus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| |||| |||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 28323747 ccatacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttca 28323806
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
||||||||||| ||||||||||||||||||||||| || ||||| | || || |||||
Sbjct: 28323807 actgtctccaataccctcaacaccatccacagccatagagtgaacaagtgcggaccagtg 28323866
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
|| || |||||||||| || |||||| || ||||||||||||||||| ||||||||||||
Sbjct: 28323867 agggccggaccaacaattgtggcgaacccaaggaacaaaatttcagcagggtgggcatat 28323926
Query: 664 tccgatgttaaaccaaagggtgt 686
|| || || || |||||||||||
Sbjct: 28323927 tctgaagtcaagccaaagggtgt 28323949
Score = 141 bits (71), Expect = 1e-030
Identities = 131/151 (86%)
Strand = Plus / Plus
Query: 812 accaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgaga 871
|||| ||||||| ||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 28324234 accagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcagggtaggata 28324293
Query: 872 aaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgt 931
||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |||||||| |
Sbjct: 28324294 aaaccattacaggcaagttcacacagacatggtacagaatgagacgcagcacacatctat 28324353
Query: 932 tttggtaagcagaggtgttgctcttcttctg 962
| ||||||| || ||| ||||||||||||||
Sbjct: 28324354 tctggtaagaaggggtattgctcttcttctg 28324384
Score = 133 bits (67), Expect = 3e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
||||||||||||| ||||||||||| || |||||||||||||| || |||| |||||| |
Sbjct: 28324033 cgtactcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtgccctat 28324092
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaa 808
| |||||||| |||||||||||||| || |||||||| |||||||||||||| |||| ||
Sbjct: 28324093 gtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaacaataa 28324152
Query: 809 ccg 811
|||
Sbjct: 28324153 ccg 28324155
Score = 87.7 bits (44), Expect = 1e-014
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||
Sbjct: 28323575 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 28323634
Query: 458 gatggtagtcatggaagtccgagc 481
|||| |||||||| ||||| ||||
Sbjct: 28323635 gatgatagtcatgaaagtcggagc 28323658
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 28323418 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 28323477
Query: 383 tgtccgtgccgaaca 397
|||||||||| ||||
Sbjct: 28323478 tgtccgtgccaaaca 28323492
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0026K20 map S10559, complete sequence
Length = 115996
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 52649 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 52708
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 52709 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 52768
Query: 1080 gaag 1083
||||
Sbjct: 52769 gaag 52772
Score = 196 bits (99), Expect = 2e-047
Identities = 177/203 (87%)
Strand = Plus / Plus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| |||| |||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 50485 ccatacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttca 50544
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
||||||||||| ||||||||||||||||||||||| || ||||| | || || |||||
Sbjct: 50545 actgtctccaataccctcaacaccatccacagccatagagtgaacaagtgcggaccagtg 50604
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
|| || |||||||||| || |||||| || ||||||||||||||||| ||||||||||||
Sbjct: 50605 agggccggaccaacaattgtggcgaacccaaggaacaaaatttcagcagggtgggcatat 50664
Query: 664 tccgatgttaaaccaaagggtgt 686
|| || || || |||||||||||
Sbjct: 50665 tctgaagtcaagccaaagggtgt 50687
Score = 141 bits (71), Expect = 1e-030
Identities = 131/151 (86%)
Strand = Plus / Plus
Query: 812 accaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgaga 871
|||| ||||||| ||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 50972 accagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcagggtaggata 51031
Query: 872 aaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgt 931
||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |||||||| |
Sbjct: 51032 aaaccattacaggcaagttcacacagacatggtacagaatgagacgcagcacacatctat 51091
Query: 932 tttggtaagcagaggtgttgctcttcttctg 962
| ||||||| || ||| ||||||||||||||
Sbjct: 51092 tctggtaagaaggggtattgctcttcttctg 51122
Score = 133 bits (67), Expect = 3e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
||||||||||||| ||||||||||| || |||||||||||||| || |||| |||||| |
Sbjct: 50771 cgtactcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtgccctat 50830
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaa 808
| |||||||| |||||||||||||| || |||||||| |||||||||||||| |||| ||
Sbjct: 50831 gtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaacaataa 50890
Query: 809 ccg 811
|||
Sbjct: 50891 ccg 50893
Score = 87.7 bits (44), Expect = 1e-014
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||
Sbjct: 50313 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 50372
Query: 458 gatggtagtcatggaagtccgagc 481
|||| |||||||| ||||| ||||
Sbjct: 50373 gatgatagtcatgaaagtcggagc 50396
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 50156 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 50215
Query: 383 tgtccgtgccgaaca 397
|||||||||| ||||
Sbjct: 50216 tgtccgtgccaaaca 50230
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 230 bits (116), Expect = 2e-057
Identities = 122/124 (98%)
Strand = Plus / Plus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 28308360 ctggatcttgtacttggcgaagaggccgaagcgctcgaagaggagggaggggaggccgga 28308419
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 28308420 gaggaagaagacggtctcgtggaggaggaaggtgacgacggtggcgagctggaactcggt 28308479
Query: 1080 gaag 1083
||||
Sbjct: 28308480 gaag 28308483
Score = 196 bits (99), Expect = 2e-047
Identities = 177/203 (87%)
Strand = Plus / Plus
Query: 484 ccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttca 543
|||||||| |||| |||||||||||||||||||||||| || || || ||||||||||||
Sbjct: 28306196 ccatacagtggcaagaaatttgatgggctccatgggaaatggtatccactgtgagcttca 28306255
Query: 544 actgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggccagta 603
||||||||||| ||||||||||||||||||||||| || ||||| | || || |||||
Sbjct: 28306256 actgtctccaataccctcaacaccatccacagccatagagtgaacaagtgcggaccagtg 28306315
Query: 604 agagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggcatat 663
|| || |||||||||| || |||||| || ||||||||||||||||| ||||||||||||
Sbjct: 28306316 agggccggaccaacaattgtggcgaacccaaggaacaaaatttcagcagggtgggcatat 28306375
Query: 664 tccgatgttaaaccaaagggtgt 686
|| || || || |||||||||||
Sbjct: 28306376 tctgaagtcaagccaaagggtgt 28306398
Score = 141 bits (71), Expect = 1e-030
Identities = 131/151 (86%)
Strand = Plus / Plus
Query: 812 accaatgtggcaaaggaagagagctcctgagacccatgaatttgaaggcaggatacgaga 871
|||| ||||||| ||||||||||||||| || |||||||||||||||||||| || || |
Sbjct: 28306683 accagtgtggcagaggaagagagctcctcaggcccatgaatttgaaggcagggtaggata 28306742
Query: 872 aaatcatgacaggcaggttcacacatacatggtagagaatgaggcgcaagacacatctgt 931
||| ||| ||||||| ||||||||| |||||||| |||||||| |||| |||||||| |
Sbjct: 28306743 aaaccattacaggcaagttcacacagacatggtacagaatgagacgcagcacacatctat 28306802
Query: 932 tttggtaagcagaggtgttgctcttcttctg 962
| ||||||| || ||| ||||||||||||||
Sbjct: 28306803 tctggtaagaaggggtattgctcttcttctg 28306833
Score = 133 bits (67), Expect = 3e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 689 cgtactcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgt 748
||||||||||||| ||||||||||| || |||||||||||||| || |||| |||||| |
Sbjct: 28306482 cgtactcatggtgaacgctgtgaacatgcttgtatagccatttggtgtgcagtgccctat 28306541
Query: 749 gcccccaatagaatataaaatcctcaaggacaaagtagaaaagaacttgagatacaacaa 808
| |||||||| |||||||||||||| || |||||||| |||||||||||||| |||| ||
Sbjct: 28306542 gtccccaataaaatataaaatcctcgagtacaaagtaaaaaagaacttgagaaacaataa 28306601
Query: 809 ccg 811
|||
Sbjct: 28306602 ccg 28306604
Score = 87.7 bits (44), Expect = 1e-014
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 398 accagtccatgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggt 457
||||||||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||
Sbjct: 28306024 accagtccatgtaaacaaaagtagaggcgtagtttcctgatttggtgtagagcacacggt 28306083
Query: 458 gatggtagtcatggaagtccgagc 481
|||| |||||||| ||||| ||||
Sbjct: 28306084 gatgatagtcatgaaagtcggagc 28306107
Score = 54.0 bits (27), Expect = 2e-004
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 28305867 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 28305926
Query: 383 tgtccgtgccgaaca 397
|||||||||| ||||
Sbjct: 28305927 tgtccgtgccaaaca 28305941
>gb|D48602.1|D48602 RICS14920A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 386
Score = 200 bits (101), Expect = 1e-048
Identities = 204/239 (85%)
Strand = Plus / Minus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 362 cccatgaatttgaaggtgcgatatgataaaatgntgagagggagattgacgcagacatgg 303
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctgg 963
||||||| ||| |||| ||||||||||| |||||| | | || |||||||||||||||
Sbjct: 302 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctgg 243
Query: 964 atcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccggagagg 1023
||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct: 242 atcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccggagagg 183
Query: 1024 aagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggtgaa 1082
||||||||| |||||||||| || |||||| ||| || ||| |||||||||||| ||||
Sbjct: 182 aagaagacgctctcgtggaggagnaaggtgccgatggaggccagctggaactcgctgaa 124
>gb|CV723301.1|CV723301 root--03-C10.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone root--03-C10,
mRNA sequence
Length = 259
Score = 200 bits (101), Expect = 1e-048
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 898 acatggtagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttc 957
||||||||||||| ||| |||| ||||||||||| |||||| | | || |||||||||
Sbjct: 235 acatggtagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttc 176
Query: 958 ttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccg 1017
||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||
Sbjct: 175 ttctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccg 116
Query: 1018 gagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcg 1077
||||||||||||||| |||||||||| ||||||||| ||| || ||| ||||||||||||
Sbjct: 115 gagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcg 56
Query: 1078 gtgaa 1082
||||
Sbjct: 55 ctgaa 51
>gb|CV723868.1|CV723868 root--05-A13.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone root--05-A13,
mRNA sequence
Length = 259
Score = 200 bits (101), Expect = 1e-048
Identities = 164/185 (88%)
Strand = Plus / Minus
Query: 898 acatggtagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttc 957
||||||||||||| ||| |||| ||||||||||| |||||| | | || |||||||||
Sbjct: 235 acatggtagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttc 176
Query: 958 ttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccg 1017
||||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||
Sbjct: 175 ttctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccg 116
Query: 1018 gagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcg 1077
||||||||||||||| |||||||||| ||||||||| ||| || ||| ||||||||||||
Sbjct: 115 gagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcg 56
Query: 1078 gtgaa 1082
||||
Sbjct: 55 ctgaa 51
>gb|D40051.1|D40051 RICS1779A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 286
Score = 184 bits (93), Expect = 8e-044
Identities = 162/185 (87%)
Strand = Plus / Minus
Query: 898 acatggtagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttc 957
||||| ||||||| ||| |||| ||||||||||| |||||| | | || |||||||||
Sbjct: 286 acatgttagagaacgagacgcactacacatctgttctggtaatcggttgtattgctcttc 227
Query: 958 ttctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccg 1017
||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||
Sbjct: 226 ttctggatcttgtacttggagaagaggccgagccgctcgaagaggagagaggggaggccg 167
Query: 1018 gagaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcg 1077
||||||||||||||| |||||||||| ||||||||| ||| || ||| ||||||||||||
Sbjct: 166 gagaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcg 107
Query: 1078 gtgaa 1082
||||
Sbjct: 106 ctgaa 102
>gb|AU184627.1|AU184627 AU184627 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3165, mRNA sequence
Length = 449
Score = 168 bits (85), Expect = 5e-039
Identities = 162/188 (86%)
Strand = Plus / Minus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 188 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 129
Query: 383 tgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctgactttg 442
|||||||||| |||| |||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 128 tgtccgtgccaaacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttgg 69
Query: 443 tgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggcaggaaat 502
|||| |||||||||||||| |||||||| ||||| ||||| |||||||| |||| |||||
Sbjct: 68 tgtagagcacacggtgatgatagtcatgaaagtcggagcctccatacagnggcaagaaat 9
Query: 503 ttgatggg 510
||||||||
Sbjct: 8 ttgatggg 1
>gb|AU173267.1|AU173267 AU173267 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1956, mRNA sequence
Length = 449
Score = 167 bits (84), Expect = 2e-038
Identities = 162/188 (86%)
Strand = Plus / Minus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 188 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 129
Query: 383 tgtccgtgccgaacaaccagtccatgtaaacaaatgttgaggcatagttccctgactttg 442
|||||||||| |||| |||||||||||||||||| || ||||| ||||| ||||| || |
Sbjct: 128 tgtccgtgccaaacagccagtccatgtaaacaaaagtagaggcgtagtttcctgatttgg 69
Query: 443 tgtacagcacacggtgatggtagtcatggaagtccgagccgccatacagcggcaggaaat 502
|||| |||||||||||||| |||||||| ||||| ||||| |||||||| |||| |||||
Sbjct: 68 tgtagagcacacggtgatgatagtcatgaaagtcggagcctccatacagtggcaagaaat 9
Query: 503 ttgatggg 510
||||||||
Sbjct: 8 ttgatggg 1
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 157 bits (79), Expect = 2e-035
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 86953 ctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccgga 86894
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
||||||||||||| |||||||||| ||||||||| ||| || ||| |||||||||||| |
Sbjct: 86893 gaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcgct 86834
Query: 1080 gaa 1082
|||
Sbjct: 86833 gaa 86831
Score = 153 bits (77), Expect = 3e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 481 ccgccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagct 540
|||||||||| |||| |||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 88136 ccgccatacaatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcc 88077
Query: 541 tcaactgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggcca 600
|||||||||||||| |||||||| |||||||||| ||| || |||||||| |||||||||
Sbjct: 88076 tcaactgtctccaagaccctcaagaccatccacacccagagagtgaagaggtgagggcca 88017
Query: 601 gtaagagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggca 660
||||| ||||| || | || | || || |||| ||| | ||| ||||| ||||| |||
Sbjct: 88016 gtaagggcagggccggccacggtagcaaagcccaagaatagaatctcagcagggtgagca 87957
Query: 661 tattccgatgttaaaccaaagggtgtggc 689
||||| ||||||| ||||||||||||||
Sbjct: 87956 tattcagatgttaggccaaagggtgtggc 87928
Score = 101 bits (51), Expect = 9e-019
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 692 actcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcc 751
|||||||||||||||||||||| || | ||| |||||||| ||||||| |||||| ||||
Sbjct: 87837 actcatggtggacgctgtgaacatgctggtacagccatttggtatgcagtgccctatgcc 87778
Query: 752 cccaatagaatataaaatcctcaaggacaaa 782
|||| |||||||| ||||||||||| |||||
Sbjct: 87777 cccagtagaatatgaaatcctcaagcacaaa 87747
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 87576 cccatgaatttgaaggtgcgatatgataaaatggtgagagggagattgacgcagacatgg 87517
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctg 962
||||||| ||| |||| ||||||||||| |||||| | | || ||||||||||||||
Sbjct: 87516 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctg 87458
Score = 48.1 bits (24), Expect = 0.012
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ttccctgactttgtgtacagcacacggtgatggtagtcatggaa 473
||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 88283 ttcccagacttggtgtagagaacacggtgatgatagtcatggaa 88240
>gb|AACV01014992.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg014992, whole
genome shotgun sequence
Length = 12136
Score = 157 bits (79), Expect = 2e-035
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 9309 ctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccgga 9250
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
||||||||||||| |||||||||| ||||||||| ||| || ||| |||||||||||| |
Sbjct: 9249 gaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcgct 9190
Query: 1080 gaa 1082
|||
Sbjct: 9189 gaa 9187
Score = 153 bits (77), Expect = 3e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 481 ccgccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagct 540
|||||||||| |||| |||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 10492 ccgccatacaatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcc 10433
Query: 541 tcaactgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggcca 600
|||||||||||||| |||||||| |||||||||| ||| || |||||||| |||||||||
Sbjct: 10432 tcaactgtctccaagaccctcaagaccatccacacccagagagtgaagaggtgagggcca 10373
Query: 601 gtaagagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggca 660
||||| ||||| || | || | || || |||| ||| | ||| ||||| ||||| |||
Sbjct: 10372 gtaagggcagggccggccacggtagcaaagcccaagaatagaatctcagcagggtgagca 10313
Query: 661 tattccgatgttaaaccaaagggtgtggc 689
||||| ||||||| ||||||||||||||
Sbjct: 10312 tattcagatgttaggccaaagggtgtggc 10284
Score = 101 bits (51), Expect = 9e-019
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 692 actcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcc 751
|||||||||||||||||||||| || | ||| |||||||| ||||||| |||||| ||||
Sbjct: 10193 actcatggtggacgctgtgaacatgctggtacagccatttggtatgcagtgccctatgcc 10134
Query: 752 cccaatagaatataaaatcctcaaggacaaa 782
|||| |||||||| ||||||||||| |||||
Sbjct: 10133 cccagtagaatatgaaatcctcaagcacaaa 10103
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 9932 cccatgaatttgaaggtgcgatatgataaaatggtgagagggagattgacgcagacatgg 9873
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctg 962
||||||| ||| |||| ||||||||||| |||||| | | || ||||||||||||||
Sbjct: 9872 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctg 9814
Score = 48.1 bits (24), Expect = 0.012
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ttccctgactttgtgtacagcacacggtgatggtagtcatggaa 473
||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 10639 ttcccagacttggtgtagagaacacggtgatgatagtcatggaa 10596
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 157 bits (79), Expect = 2e-035
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 86951 ctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccgga 86892
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
||||||||||||| |||||||||| ||||||||| ||| || ||| |||||||||||| |
Sbjct: 86891 gaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcgct 86832
Query: 1080 gaa 1082
|||
Sbjct: 86831 gaa 86829
Score = 153 bits (77), Expect = 3e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 481 ccgccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagct 540
|||||||||| |||| |||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 88134 ccgccatacaatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcc 88075
Query: 541 tcaactgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggcca 600
|||||||||||||| |||||||| |||||||||| ||| || |||||||| |||||||||
Sbjct: 88074 tcaactgtctccaagaccctcaagaccatccacacccagagagtgaagaggtgagggcca 88015
Query: 601 gtaagagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggca 660
||||| ||||| || | || | || || |||| ||| | ||| ||||| ||||| |||
Sbjct: 88014 gtaagggcagggccggccacggtagcaaagcccaagaatagaatctcagcagggtgagca 87955
Query: 661 tattccgatgttaaaccaaagggtgtggc 689
||||| ||||||| ||||||||||||||
Sbjct: 87954 tattcagatgttaggccaaagggtgtggc 87926
Score = 101 bits (51), Expect = 9e-019
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 692 actcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcc 751
|||||||||||||||||||||| || | ||| |||||||| ||||||| |||||| ||||
Sbjct: 87835 actcatggtggacgctgtgaacatgctggtacagccatttggtatgcagtgccctatgcc 87776
Query: 752 cccaatagaatataaaatcctcaaggacaaa 782
|||| |||||||| ||||||||||| |||||
Sbjct: 87775 cccagtagaatatgaaatcctcaagcacaaa 87745
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 87574 cccatgaatttgaaggtgcgatatgataaaatggtgagagggagattgacgcagacatgg 87515
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctg 962
||||||| ||| |||| ||||||||||| |||||| | | || ||||||||||||||
Sbjct: 87514 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctg 87456
Score = 48.1 bits (24), Expect = 0.012
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ttccctgactttgtgtacagcacacggtgatggtagtcatggaa 473
||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 88281 ttcccagacttggtgtagagaacacggtgatgatagtcatggaa 88238
>gb|CH401218.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000055
genomic scaffold, whole genome shotgun sequence
Length = 1431804
Score = 157 bits (79), Expect = 2e-035
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 79008 ctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccgga 78949
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
||||||||||||| |||||||||| ||||||||| ||| || ||| |||||||||||| |
Sbjct: 78948 gaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcgct 78889
Query: 1080 gaa 1082
|||
Sbjct: 78888 gaa 78886
Score = 153 bits (77), Expect = 3e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 481 ccgccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagct 540
|||||||||| |||| |||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 80191 ccgccatacaatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcc 80132
Query: 541 tcaactgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggcca 600
|||||||||||||| |||||||| |||||||||| ||| || |||||||| |||||||||
Sbjct: 80131 tcaactgtctccaagaccctcaagaccatccacacccagagagtgaagaggtgagggcca 80072
Query: 601 gtaagagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggca 660
||||| ||||| || | || | || || |||| ||| | ||| ||||| ||||| |||
Sbjct: 80071 gtaagggcagggccggccacggtagcaaagcccaagaatagaatctcagcagggtgagca 80012
Query: 661 tattccgatgttaaaccaaagggtgtggc 689
||||| ||||||| ||||||||||||||
Sbjct: 80011 tattcagatgttaggccaaagggtgtggc 79983
Score = 101 bits (51), Expect = 9e-019
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 692 actcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcc 751
|||||||||||||||||||||| || | ||| |||||||| ||||||| |||||| ||||
Sbjct: 79892 actcatggtggacgctgtgaacatgctggtacagccatttggtatgcagtgccctatgcc 79833
Query: 752 cccaatagaatataaaatcctcaaggacaaa 782
|||| |||||||| ||||||||||| |||||
Sbjct: 79832 cccagtagaatatgaaatcctcaagcacaaa 79802
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 79631 cccatgaatttgaaggtgcgatatgataaaatggtgagagggagattgacgcagacatgg 79572
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctg 962
||||||| ||| |||| ||||||||||| |||||| | | || ||||||||||||||
Sbjct: 79571 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctg 79513
Score = 48.1 bits (24), Expect = 0.012
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ttccctgactttgtgtacagcacacggtgatggtagtcatggaa 473
||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 80338 ttcccagacttggtgtagagaacacggtgatgatagtcatggaa 80295
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome
shotgun sequence
Length = 28626509
Score = 157 bits (79), Expect = 2e-035
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 79008 ctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccgga 78949
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
||||||||||||| |||||||||| ||||||||| ||| || ||| |||||||||||| |
Sbjct: 78948 gaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcgct 78889
Query: 1080 gaa 1082
|||
Sbjct: 78888 gaa 78886
Score = 153 bits (77), Expect = 3e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 481 ccgccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagct 540
|||||||||| |||| |||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 80191 ccgccatacaatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcc 80132
Query: 541 tcaactgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggcca 600
|||||||||||||| |||||||| |||||||||| ||| || |||||||| |||||||||
Sbjct: 80131 tcaactgtctccaagaccctcaagaccatccacacccagagagtgaagaggtgagggcca 80072
Query: 601 gtaagagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggca 660
||||| ||||| || | || | || || |||| ||| | ||| ||||| ||||| |||
Sbjct: 80071 gtaagggcagggccggccacggtagcaaagcccaagaatagaatctcagcagggtgagca 80012
Query: 661 tattccgatgttaaaccaaagggtgtggc 689
||||| ||||||| ||||||||||||||
Sbjct: 80011 tattcagatgttaggccaaagggtgtggc 79983
Score = 101 bits (51), Expect = 9e-019
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 692 actcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcc 751
|||||||||||||||||||||| || | ||| |||||||| ||||||| |||||| ||||
Sbjct: 79892 actcatggtggacgctgtgaacatgctggtacagccatttggtatgcagtgccctatgcc 79833
Query: 752 cccaatagaatataaaatcctcaaggacaaa 782
|||| |||||||| ||||||||||| |||||
Sbjct: 79832 cccagtagaatatgaaatcctcaagcacaaa 79802
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 79631 cccatgaatttgaaggtgcgatatgataaaatggtgagagggagattgacgcagacatgg 79572
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctg 962
||||||| ||| |||| ||||||||||| |||||| | | || ||||||||||||||
Sbjct: 79571 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctg 79513
Score = 48.1 bits (24), Expect = 0.012
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ttccctgactttgtgtacagcacacggtgatggtagtcatggaa 473
||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 80338 ttcccagacttggtgtagagaacacggtgatgatagtcatggaa 80295
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
complete sequence
Length = 29644043
Score = 157 bits (79), Expect = 2e-035
Identities = 112/123 (91%)
Strand = Plus / Minus
Query: 960 ctggatcttgtacttggcgaagagtccgaagcgctcgaagaggagggaggggaggccgga 1019
||||||||||||||||| |||||| |||| ||||||||||||||| ||||||||||||||
Sbjct: 87654 ctggatcttgtacttggagaagaggccgaggcgctcgaagaggagagaggggaggccgga 87595
Query: 1020 gaggaagaagacggtctcgtggagcaggaaggtgacgacggtggcgagctggaactcggt 1079
||||||||||||| |||||||||| ||||||||| ||| || ||| |||||||||||| |
Sbjct: 87594 gaggaagaagacgctctcgtggaggaggaaggtgccgatggaggccagctggaactcgct 87535
Query: 1080 gaa 1082
|||
Sbjct: 87534 gaa 87532
Score = 153 bits (77), Expect = 3e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 481 ccgccatacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagct 540
|||||||||| |||| |||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 88837 ccgccatacaatggcaagaaattggacgggctccatgggaagtggtagccactgtgagcc 88778
Query: 541 tcaactgtctccaaaaccctcaacaccatccacagccacagggtgaagagatgagggcca 600
|||||||||||||| |||||||| |||||||||| ||| || |||||||| |||||||||
Sbjct: 88777 tcaactgtctccaagaccctcaagaccatccacacccagagagtgaagaggtgagggcca 88718
Query: 601 gtaagagcaggaccaacaactggggcgaatcccaggaacaaaatttcagctgggtgggca 660
||||| ||||| || | || | || || |||| ||| | ||| ||||| ||||| |||
Sbjct: 88717 gtaagggcagggccggccacggtagcaaagcccaagaatagaatctcagcagggtgagca 88658
Query: 661 tattccgatgttaaaccaaagggtgtggc 689
||||| ||||||| ||||||||||||||
Sbjct: 88657 tattcagatgttaggccaaagggtgtggc 88629
Score = 101 bits (51), Expect = 9e-019
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 692 actcatggtggacgctgtgaacgtgtttgtatagccatttcgtatgcaatgccctgtgcc 751
|||||||||||||||||||||| || | ||| |||||||| ||||||| |||||| ||||
Sbjct: 88538 actcatggtggacgctgtgaacatgctggtacagccatttggtatgcagtgccctatgcc 88479
Query: 752 cccaatagaatataaaatcctcaaggacaaa 782
|||| |||||||| ||||||||||| |||||
Sbjct: 88478 cccagtagaatatgaaatcctcaagcacaaa 88448
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Minus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 88277 cccatgaatttgaaggtgcgatatgataaaatggtgagagggagattgacgcagacatgg 88218
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctg 962
||||||| ||| |||| ||||||||||| |||||| | | || ||||||||||||||
Sbjct: 88217 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctg 88159
Score = 48.1 bits (24), Expect = 0.012
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 430 ttccctgactttgtgtacagcacacggtgatggtagtcatggaa 473
||||| ||||| ||||| || ||||||||||| |||||||||||
Sbjct: 88984 ttcccagacttggtgtagagaacacggtgatgatagtcatggaa 88941
>gb|C28642.1|C28642 C28642 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C61906_1A, mRNA sequence
Length = 390
Score = 121 bits (61), Expect = 1e-024
Identities = 171/208 (82%)
Strand = Plus / Minus
Query: 345 ttctttctcctcaatggtctttgccttgcgataatccttgtccgtgccgaacaaccagtc 404
|||||||||||| | || ||||| |||||| ||||| || | || || |||| ||||||
Sbjct: 208 ttctttctcctctagggcctttgtcttgcggtaatctttancagtcccaaacagccagtc 149
Query: 405 catgtaaacaaatgttgaggcatagttccctgactttgtgtacagcacacggtgatggta 464
|||||| | || || || | || ||||| ||||| ||||| || ||||||||||| ||
Sbjct: 148 catgtagatgaaggtcgacgagtaattcccagacttggtgtagagaacacggtgatgata 89
Query: 465 gtcatggaagtccgagccgccatacagcggcaggaaatttgatgggctccatgggaagtg 524
||||||||| || | ||||||||||| |||| |||||| || |||||||||||||||||
Sbjct: 88 gtcatggaattcagcgccgccatacaatggcaagaaattggacgggctccatgggaagtg 29
Query: 525 atagccgctgtgagcttcaactgtctcc 552
||||| |||||||| ||||||||||||
Sbjct: 28 gtagccactgtgagcctcaactgtctcc 1
>gb|CF324946.1|CF324946 JMT1--01-O10.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--01-O10, mRNA sequence
Length = 407
Score = 81.8 bits (41), Expect = 9e-013
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 323 ccacaatctacagatttttcccttctttctcctcaatggtctttgccttgcgataatcct 382
||||||| |||| || ||||| ||||||||||| || | ||| || ||||| |||||||
Sbjct: 315 ccacaatttacaaatgcttcccgtctttctcctcgatagccttggcattgcggtaatcct 374
Query: 383 tgtccgtgccgaacaaccagtccatgtaaacaa 415
|||||||||| |||| |||||||||||||||||
Sbjct: 375 tgtccgtgccaaacagccagtccatgtaaacaa 407
>dbj|AG212000.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF6812_0_101_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF6812, genomic survey sequence
Length = 613
Score = 54.0 bits (27), Expect = 2e-004
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 844 cccatgaatttgaaggcaggatacgagaaaatcatgacaggcaggttcacacatacatgg 903
|||||||||||||||| |||| || ||||| ||| ||| || || || || ||||||
Sbjct: 152 cccatgaatttgaaggtgcgatatgataaaatggtgagagggagattgacgcagacatgg 211
Query: 904 tagagaatgaggcgcaagacacatctgttttggtaagcagaggtgttgctcttcttctg 962
||||||| ||| |||| ||||||||||| |||||| | | || ||||||||||||||
Sbjct: 212 tagagaacgagacgcactacacatctgttctggtaatcgggtgtattgctcttcttctg 270
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,235,745
Number of Sequences: 438736
Number of extensions: 2235745
Number of successful extensions: 17493
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17195
Number of HSP's gapped (non-prelim): 284
length of query: 1312
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1291
effective length of database: 2,791,206,460
effective search space: 3603447539860
effective search space used: 3603447539860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)