BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448753.2.1
(537 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF315919.1|CF315919 HD--05-A07.b1 OsHDAC1-overexpressing... 165 3e-038
dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA... 165 3e-038
dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA... 165 3e-038
gb|C27236.1|C27236 C27236 Rice callus cDNA Oryza sativa (ja... 147 7e-033
gb|D22825.1|D22825 RICC1480A Rice callus Oryza sativa (japo... 129 2e-027
emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC O... 74 9e-011
emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC O... 74 9e-011
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 74 9e-011
gb|AACV01024998.1| Oryza sativa (japonica cultivar-group) c... 74 9e-011
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 74 9e-011
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 74 9e-011
>gb|CF315919.1|CF315919 HD--05-A07.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--05-A07, mRNA sequence
Length = 429
Score = 165 bits (83), Expect = 3e-038
Identities = 233/283 (82%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatg 173
|||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||| || |
Sbjct: 141 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggaggcctttcgtacg 200
Query: 174 gaaccgatgatcacagtctcagagacgagtttgccaaatatggacaagttattgaagcta 233
| || ||||| || || |||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 201 gcacagatgagcagagcctcagagatacttttgccaattatggtcaagttattgaagcta 260
Query: 234 agattatccttgatcgtgagtctgggaggtccagaggttttggctttataacttacacgt 293
|||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||| | |
Sbjct: 261 agatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataacttacgcat 320
Query: 294 cttctgaggaggcttcggctgccatcactgccatggatggaaagactctggatggacgga 353
| ||| |||||||| ||||| ||||| ||| ||||||||||| ||| ||||| || |
Sbjct: 321 caagtgaagaggcttcagctgcaatcacagccttggatggaaaggatctcgatgggcgta 380
Query: 354 acatacgggttaatcatgctaacgagaggacaggtggcttccg 396
|||| ||||||| ||| || ||||| || |||||||||||
Sbjct: 381 acatcagggttaacactgccaatgagagaactggtggcttccg 423
>dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N14, full
insert sequence
Length = 1069
Score = 165 bits (83), Expect = 3e-038
Identities = 233/283 (82%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatg 173
|||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||| || |
Sbjct: 115 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggaggcctttcgtacg 174
Query: 174 gaaccgatgatcacagtctcagagacgagtttgccaaatatggacaagttattgaagcta 233
| || ||||| || || |||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 175 gcacagatgagcagagcctcagagatacttttgccaattatggtcaagttattgaagcta 234
Query: 234 agattatccttgatcgtgagtctgggaggtccagaggttttggctttataacttacacgt 293
|||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||| | |
Sbjct: 235 agatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataacttacgcat 294
Query: 294 cttctgaggaggcttcggctgccatcactgccatggatggaaagactctggatggacgga 353
| ||| |||||||| ||||| ||||| ||| ||||||||||| ||| ||||| || |
Sbjct: 295 caagtgaagaggcttcagctgcaatcacagccttggatggaaaggatctcgatgggcgta 354
Query: 354 acatacgggttaatcatgctaacgagaggacaggtggcttccg 396
|||| ||||||| ||| || ||||| || |||||||||||
Sbjct: 355 acatcagggttaacactgccaatgagagaactggtggcttccg 397
>dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146P18, full
insert sequence
Length = 1027
Score = 165 bits (83), Expect = 3e-038
Identities = 233/283 (82%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatg 173
|||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||| || |
Sbjct: 106 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggaggcctttcgtacg 165
Query: 174 gaaccgatgatcacagtctcagagacgagtttgccaaatatggacaagttattgaagcta 233
| || ||||| || || |||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 166 gcacagatgagcagagcctcagagatacttttgccaattatggtcaagttattgaagcta 225
Query: 234 agattatccttgatcgtgagtctgggaggtccagaggttttggctttataacttacacgt 293
|||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||| | |
Sbjct: 226 agatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataacttacgcat 285
Query: 294 cttctgaggaggcttcggctgccatcactgccatggatggaaagactctggatggacgga 353
| ||| |||||||| ||||| ||||| ||| ||||||||||| ||| ||||| || |
Sbjct: 286 caagtgaagaggcttcagctgcaatcacagccttggatggaaaggatctcgatgggcgta 345
Query: 354 acatacgggttaatcatgctaacgagaggacaggtggcttccg 396
|||| ||||||| ||| || ||||| || |||||||||||
Sbjct: 346 acatcagggttaacactgccaatgagagaactggtggcttccg 388
>gb|C27236.1|C27236 C27236 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C51383_2A, mRNA sequence
Length = 378
Score = 147 bits (74), Expect = 7e-033
Identities = 209/253 (82%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagggctttcttatg 173
|||| ||| ||||||||||||||||||| || ||||||||||||||||| ||||| || |
Sbjct: 40 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggaggcctttcgtacg 99
Query: 174 gaaccgatgatcacagtctcagagacgagtttgccaaatatggacaagttattgaagcta 233
| || ||||| || | |||||||| |||||||| ||||| ||||||||||||||||
Sbjct: 100 gcacagatgagcagan-ctcagagatacttttgccaattatggtcaagttattgaagcta 158
Query: 234 agattatccttgatcgtgagtctgggaggtccagaggttttggctttataacttacacgt 293
|||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||| | |
Sbjct: 159 agatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataacttacgcat 218
Query: 294 cttctgaggaggcttcggctgccatcactgccatggatggaaagactctggatggacgga 353
| ||| |||||||| ||||| ||||| ||| ||||||||||| ||| ||||| || |
Sbjct: 219 caagtgaagaggcttcagctgcaatcacagccttggatggaaaggatctcgatgggcgta 278
Query: 354 acatacgggttaa 366
|||| |||||||
Sbjct: 279 acatcagggttaa 291
>gb|D22825.1|D22825 RICC1480A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1480_1A, mRNA sequence
Length = 354
Score = 129 bits (65), Expect = 2e-027
Identities = 203/249 (81%)
Strand = Plus / Plus
Query: 148 gctttttgttggagggctttcttatggaaccgatgatcacagtctcagagacgagtttgc 207
||||||||||||||| ||||| || || || ||||| || || |||||||| |||||
Sbjct: 1 gctttttgttggaggcctttcgtacggcacagatgagcagagcctcagagatacttttgc 60
Query: 208 caaatatggacaagttattgaagctaagattatccttgatcgtgagtctgggaggtccag 267
||| ||||| |||||||||||||||||||| ||| ||| ||||| |||||||||| ||
Sbjct: 61 caattatggtcaagttattgaagctaagatcatcaatgaccgtgaaactgggaggtctag 120
Query: 268 aggttttggctttataacttacacgtcttctgaggaggcttcggctgccatcactgccat 327
|||||||||||| ||||||||| | || ||| |||||||| ||||| ||||| ||| |
Sbjct: 121 aggttttggcttcataacttacgcatcaagtgaagaggcttcagctgcaatcacagcctt 180
Query: 328 ggatggaaagactctggatggacggaacatacgggttaatcatgctaacgagaggacagg 387
|||||||||| ||| ||||| || ||||| ||||||| ||| || ||||| || ||
Sbjct: 181 ggatggaaaggatctcgatgggcgtaacatcagggttaacactgccaatgagagaactgg 240
Query: 388 tggcttccg 396
|||||||||
Sbjct: 241 tggcttccg 249
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 127026
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 52813 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 52754
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 52753 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 52705
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 53106 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 53058
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 136155
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 6496 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 6555
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 6556 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 6604
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 6203 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 6251
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 1482805 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 1482864
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 1482865 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 1482913
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 1482512 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 1482560
>gb|AACV01024998.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024998, whole
genome shotgun sequence
Length = 42222
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 9389 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 9330
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 9329 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 9281
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 9682 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 9634
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118
genomic scaffold, whole genome shotgun sequence
Length = 3660441
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 268497 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 268556
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 268557 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 268605
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 268204 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 268252
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 15791602 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 15791661
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 15791662 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 15791710
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 15791309 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 15791357
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 19173166 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 19173225
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 19173226 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 19173274
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 19172873 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 19172921
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 73.8 bits (37), Expect = 9e-011
Identities = 91/109 (83%)
Strand = Plus / Plus
Query: 229 agctaagattatccttgatcgtgagtctgggaggtccagaggttttggctttataactta 288
||||||||| ||| ||| ||||| |||||||||| |||||||||||||| ||||||||
Sbjct: 19099393 agctaagatcatcaatgaccgtgaaactgggaggtctagaggttttggcttcataactta 19099452
Query: 289 cacgtcttctgaggaggcttcggctgccatcactgccatggatggaaag 337
| | || ||| |||||||| ||||| ||||| ||| |||||||||||
Sbjct: 19099453 cgcatcaagtgaagaggcttcagctgcaatcacagccttggatggaaag 19099501
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 114 tctaccaagcaatcagatgcatgtcatcatccaagctttttgttggagg 162
|||| ||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 19099100 tctatcaatcaatcagatgcatgtcatcctcaaagctttttgttggagg 19099148
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 536,920
Number of Sequences: 438736
Number of extensions: 536920
Number of successful extensions: 16190
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15995
Number of HSP's gapped (non-prelim): 178
length of query: 537
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 516
effective length of database: 2,791,206,460
effective search space: 1440262533360
effective search space used: 1440262533360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)