BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2448720.2.1
         (510 letters)

Database: Oryza_nucl_with_EST.fasta 
           438,736 sequences; 2,800,419,916 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XM_480151.1|  Oryza sativa (japonica cultivar-group),  mRNA   125   2e-026
dbj|AP003940.3|  Oryza sativa (japonica cultivar-group) geno...   115   2e-023
dbj|AP005467.3|  Oryza sativa (japonica cultivar-group) geno...   115   2e-023
gb|AACV01017284.1|  Oryza sativa (japonica cultivar-group) c...   115   2e-023
ref|NT_107239.1|  Oryza sativa (japonica cultivar-group)          115   2e-023
gb|CH401228.1|  Oryza sativa (japonica cultivar-group) chrom...   115   2e-023
gb|CM000145.1|  Oryza sativa (japonica cultivar-group) chrom...   115   2e-023
dbj|AP008214.1|  Oryza sativa (japonica cultivar-group) geno...   115   2e-023
dbj|AG024984.1|  Oryza sativa (japonica cultivar-group) DNA,...   113   9e-023
>ref|XM_480151.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1803

 Score =  125 bits (63), Expect = 2e-026
 Identities = 180/219 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
            |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 1514 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 1573

                                                                        
Query: 61   actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
            |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 1574 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 1633

                                                                        
Query: 121  ccgagatggtcgtcccggacaatgccctctactgtggtctactgaaggagaggcaaaagc 180
            | || ||| || | || || |||||  | ||||||||||||||||| ||   ||||||||
Sbjct: 1634 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaaagacttgcaaaagc 1693

                                                   
Query: 181  cacaggttcatgagtcgaacagcaagtcgtcggcgcaag 219
            ||||| ||||  ||   ||||||||||| ||||| ||||
Sbjct: 1694 cacagattcaccaggtaaacagcaagtcatcggctcaag 1732
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1066_B03
          Length = 115339

 Score =  115 bits (58), Expect = 2e-023
 Identities = 139/166 (83%)
 Strand = Plus / Minus

                                                                         
Query: 1     cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
             |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 74004 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 73945

                                                                         
Query: 61    actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
             |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 73944 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 73885

                                                           
Query: 121   ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
             | || ||| || | || || |||||  | |||||||||||||||||
Sbjct: 73884 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 73839
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1349_D05
          Length = 174478

 Score =  115 bits (58), Expect = 2e-023
 Identities = 139/166 (83%)
 Strand = Plus / Minus

                                                                          
Query: 1      cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
              |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 165243 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 165184

                                                                          
Query: 61     actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
              |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 165183 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 165124

                                                            
Query: 121    ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
              | || ||| || | || || |||||  | |||||||||||||||||
Sbjct: 165123 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 165078
>gb|AACV01017284.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017284, whole
             genome shotgun sequence
          Length = 44346

 Score =  115 bits (58), Expect = 2e-023
 Identities = 139/166 (83%)
 Strand = Plus / Minus

                                                                         
Query: 1     cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
             |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 29207 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 29148

                                                                         
Query: 61    actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
             |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 29147 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 29088

                                                           
Query: 121   ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
             | || ||| || | || || |||||  | |||||||||||||||||
Sbjct: 29087 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 29042
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
          Length = 28196693

 Score =  115 bits (58), Expect = 2e-023
 Identities = 139/166 (83%)
 Strand = Plus / Minus

                                                                           
Query: 1       cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
               |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 2882046 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 2881987

                                                                           
Query: 61      actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
               |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 2881986 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 2881927

                                                             
Query: 121     ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
               | || ||| || | || || |||||  | |||||||||||||||||
Sbjct: 2881926 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 2881881
>gb|CH401228.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000065 genomic
               scaffold, whole genome shotgun sequence
          Length = 5026603

 Score =  115 bits (58), Expect = 2e-023
 Identities = 139/166 (83%)
 Strand = Plus / Minus

                                                                           
Query: 1       cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
               |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 3007363 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 3007304

                                                                           
Query: 61      actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
               |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 3007303 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 3007244

                                                             
Query: 121     ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
               | || ||| || | || || |||||  | |||||||||||||||||
Sbjct: 3007243 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 3007198
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
               sequence
          Length = 27103171

 Score =  115 bits (58), Expect = 2e-023
 Identities = 139/166 (83%)
 Strand = Plus / Minus

                                                                           
Query: 1       cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
               |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 3007363 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 3007304

                                                                           
Query: 61      actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
               |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 3007303 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 3007244

                                                             
Query: 121     ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
               | || ||| || | || || |||||  | |||||||||||||||||
Sbjct: 3007243 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 3007198
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  115 bits (58), Expect = 2e-023
 Identities = 139/166 (83%)
 Strand = Plus / Minus

                                                                           
Query: 1       cggtcctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatg 60
               |||| ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| 
Sbjct: 3114520 cggttctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggata 3114461

                                                                           
Query: 61      actggtacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatca 120
               |||||||||  |||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct: 3114460 actggtacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatca 3114401

                                                             
Query: 121     ccgagatggtcgtcccggacaatgccctctactgtggtctactgaa 166
               | || ||| || | || || |||||  | |||||||||||||||||
Sbjct: 3114400 ctgaaatgatcatgccagataatgcattgtactgtggtctactgaa 3114355
>dbj|AG024984.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04200T, 3'
           flanking sequence of Tos17 insertion in rice strain
           NC0590, genomic survey sequence
          Length = 406

 Score =  113 bits (57), Expect = 9e-023
 Identities = 135/161 (83%)
 Strand = Plus / Plus

                                                                       
Query: 6   ctagtctcgctcgacaacgttggtgtctggaatctgcgcgccgaaaggctggatgactgg 65
           ||||||||||||||||| |||||  |||||||||| ||  | || | ||||||| |||||
Sbjct: 1   ctagtctcgctcgacaatgttggcatctggaatctccggtctgagaagctggataactgg 60

                                                                       
Query: 66  tacagagggcaggaggtctatgtgaaggttgccgatccactgggctacaacatcaccgag 125
           ||||  |||||||||||||||||||| || || ||||||||||| ||||||||||| || 
Sbjct: 61  tacaatgggcaggaggtctatgtgaaagtggctgatccactgggatacaacatcactgaa 120

                                                    
Query: 126 atggtcgtcccggacaatgccctctactgtggtctactgaa 166
           ||| || | || || |||||  | |||||||||||||||||
Sbjct: 121 atgatcatgccagataatgcattgtactgtggtctactgaa 161
  Database: Oryza_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:41 PM
  Number of letters in database: 2,800,419,916
  Number of sequences in database:  438,736
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 526,710
Number of Sequences: 438736
Number of extensions: 526710
Number of successful extensions: 10866
Number of sequences better than  0.5: 9
Number of HSP's better than  0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10792
Number of HSP's gapped (non-prelim): 55
length of query: 510
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 489
effective length of database: 2,791,206,460
effective search space: 1364899958940
effective search space used: 1364899958940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)