BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448637.2.1
(1190 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK059498.1| Oryza sativa (japonica cultivar-group) cDNA... 391 e-106
dbj|AK102378.1| Oryza sativa (japonica cultivar-group) cDNA... 391 e-106
gb|AY425991.1| Oryza sativa (japonica cultivar-group) homeo... 391 e-106
ref|XM_468564.1| Oryza sativa (japonica cultivar-group), p... 389 e-105
emb|AJ556802.1|OSA556802 Oryza sativa (japonica cultivar-gr... 315 3e-083
gb|AC105733.2| Oryza sativa (japonica cultivar-group) chrom... 204 8e-050
gb|AACV01005752.1| Oryza sativa (japonica cultivar-group) c... 204 8e-050
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 204 8e-050
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 204 8e-050
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 204 8e-050
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 204 8e-050
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 204 8e-050
dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA... 137 2e-029
dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA... 137 2e-029
gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeo... 137 2e-029
gb|AY554037.1| Oryza sativa (japonica cultivar-group) clone... 137 2e-029
ref|NM_197030.1| Oryza sativa (japonica cultivar-group) put... 135 6e-029
gb|CG206831.1|CG206831 TOS0452 TAMU Rice Japonica Nipponbar... 127 1e-026
dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA... 127 1e-026
gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11... 127 1e-026
gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) c... 127 1e-026
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 127 1e-026
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 127 1e-026
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 127 1e-026
gb|AU181084.1|AU181084 AU181084 Rice green shoot Oryza sati... 121 9e-025
gb|CV152400.1|CV152400 LS11-S.SEQ Cold stressed rice cDNA l... 98 1e-017
gb|CB637613.1|CB637613 OSJNEa04I17.r OSJNEa Oryza sativa (j... 70 3e-009
gb|CX728680.1|CX728680 OSJNEf10P09.r OSJNEf Oryza sativa (j... 52 7e-004
gb|CB683050.1|CB683050 OSJNEf10P09.f OSJNEf Oryza sativa (j... 46 0.044
>dbj|AK059498.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H11, full
insert sequence
Length = 1573
Score = 391 bits (197), Expect = e-106
Identities = 578/705 (81%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 1268 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 1209
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 1208 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 1149
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccattagtttcgagatgtctgagaata 563
|||||||||| |||||||| | | |||||| ||||| | ||| | |||| |||||| |
Sbjct: 1148 acacgcctgatggcaggtagacatggccctgctccatcaatttgggaatgtttgagaaca 1089
Query: 564 gtgctttccttcctgactcgtcgaagatcttgtctagcgtcaggtcttgcagcgcaacaa 623
||||| |||| | ||| || |||||| |||| | || ||||| || | || ||||
Sbjct: 1088 atgcttcttttccaggctcatcaaagatcctgtccaatgtgaggtcctgtaaggcgacaa 1029
Query: 624 gagatgtttctaacatgtccagccctgccttgtttgcaaacgtaaacataggtttctcct 683
| || ||||||| ||||||||| ||||| ||||| ||||| ||||||| ||||| ||||
Sbjct: 1028 gggaagtttctagcatgtccagtcctgctttgttggcaaatgtaaacaccggtttttcct 969
Query: 684 taaaggagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcac 743
| || |||||||||| || ||||||| | | |||||| ||||| ||||||||| |||
Sbjct: 968 tgaatgagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctg 909
Query: 744 cagctccatctgattgattaagtaattccatacctagatggtagtgataactctggcaaa 803
|| |||||||||||||| ||||||| || | ||||||||||| || || ||||||||||
Sbjct: 908 catctccatctgattgactaagtaactctacccctagatggtaatggtagctctggcaaa 849
Query: 804 cccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgcccagcattta 863
|||||| |||||| || || ||||||||||| ||||| | ||||| || || |||||||
Sbjct: 848 cccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgtccggcattta 789
Query: 864 gaccagattgggagggagatatagccatcgacactctttgcacagcagaaatgacactac 923
|||||| ||| |||||||| |||||||| |||||||||||||||||||||| | ||||
Sbjct: 788 gaccagtttgagagggagagatagccattgacactctttgcacagcagaaacaatgctac 729
Query: 924 gaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctcatacgggaatt 983
| |||||||| || ||||| |||||||| ||||| || || |||| ||| || |||||||
Sbjct: 728 ggacatattggcgagccatagctgcaacactgtcttggagatgcaactcgtaagggaatt 669
Query: 984 gaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgcatcccctgagg 1043
|||| ||||| ||||| ||||||| ||| || || ||||||| ||||||||| || ||||
Sbjct: 668 gaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgcatctccggagg 609
Query: 1044 cttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|||| | || || || || || ||||||||||||||||||||||
Sbjct: 608 cttgagctgttgctgaacctacttcaagactagatgccaaatcta 564
>dbj|AK102378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091P14, full
insert sequence
Length = 3252
Score = 391 bits (197), Expect = e-106
Identities = 578/705 (81%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 2931 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 2872
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 2871 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 2812
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccattagtttcgagatgtctgagaata 563
|||||||||| |||||||| | | |||||| ||||| | ||| | |||| |||||| |
Sbjct: 2811 acacgcctgatggcaggtagacatggccctgctccatcaatttgggaatgtttgagaaca 2752
Query: 564 gtgctttccttcctgactcgtcgaagatcttgtctagcgtcaggtcttgcagcgcaacaa 623
||||| |||| | ||| || |||||| |||| | || ||||| || | || ||||
Sbjct: 2751 atgcttcttttccaggctcatcaaagatcctgtccaatgtgaggtcctgtaaggcgacaa 2692
Query: 624 gagatgtttctaacatgtccagccctgccttgtttgcaaacgtaaacataggtttctcct 683
| || ||||||| ||||||||| ||||| ||||| ||||| ||||||| ||||| ||||
Sbjct: 2691 gggaagtttctagcatgtccagtcctgctttgttggcaaatgtaaacaccggtttttcct 2632
Query: 684 taaaggagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcac 743
| || |||||||||| || ||||||| | | |||||| ||||| ||||||||| |||
Sbjct: 2631 tgaatgagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctg 2572
Query: 744 cagctccatctgattgattaagtaattccatacctagatggtagtgataactctggcaaa 803
|| |||||||||||||| ||||||| || | ||||||||||| || || ||||||||||
Sbjct: 2571 catctccatctgattgactaagtaactctacccctagatggtaatggtagctctggcaaa 2512
Query: 804 cccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgcccagcattta 863
|||||| |||||| || || ||||||||||| ||||| | ||||| || || |||||||
Sbjct: 2511 cccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgtccggcattta 2452
Query: 864 gaccagattgggagggagatatagccatcgacactctttgcacagcagaaatgacactac 923
|||||| ||| |||||||| |||||||| |||||||||||||||||||||| | ||||
Sbjct: 2451 gaccagtttgagagggagagatagccattgacactctttgcacagcagaaacaatgctac 2392
Query: 924 gaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctcatacgggaatt 983
| |||||||| || ||||| |||||||| ||||| || || |||| ||| || |||||||
Sbjct: 2391 ggacatattggcgagccatagctgcaacactgtcttggagatgcaactcgtaagggaatt 2332
Query: 984 gaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgcatcccctgagg 1043
|||| ||||| ||||| ||||||| ||| || || ||||||| ||||||||| || ||||
Sbjct: 2331 gaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgcatctccggagg 2272
Query: 1044 cttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|||| | || || || || || ||||||||||||||||||||||
Sbjct: 2271 cttgagctgttgctgaacctacttcaagactagatgccaaatcta 2227
>gb|AY425991.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper
protein Hox10 mRNA, complete cds
Length = 3252
Score = 391 bits (197), Expect = e-106
Identities = 578/705 (81%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 2931 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 2872
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 2871 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 2812
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccattagtttcgagatgtctgagaata 563
|||||||||| |||||||| | | |||||| ||||| | ||| | |||| |||||| |
Sbjct: 2811 acacgcctgatggcaggtagacatggccctgctccatcaatttgggaatgtttgagaaca 2752
Query: 564 gtgctttccttcctgactcgtcgaagatcttgtctagcgtcaggtcttgcagcgcaacaa 623
||||| |||| | ||| || |||||| |||| | || ||||| || | || ||||
Sbjct: 2751 atgcttcttttccaggctcatcaaagatcctgtccaatgtgaggtcctgtaaggcgacaa 2692
Query: 624 gagatgtttctaacatgtccagccctgccttgtttgcaaacgtaaacataggtttctcct 683
| || ||||||| ||||||||| ||||| ||||| ||||| ||||||| ||||| ||||
Sbjct: 2691 gggaagtttctagcatgtccagtcctgctttgttggcaaatgtaaacaccggtttttcct 2632
Query: 684 taaaggagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcac 743
| || |||||||||| || ||||||| | | |||||| ||||| ||||||||| |||
Sbjct: 2631 tgaatgagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctg 2572
Query: 744 cagctccatctgattgattaagtaattccatacctagatggtagtgataactctggcaaa 803
|| |||||||||||||| ||||||| || | ||||||||||| || || ||||||||||
Sbjct: 2571 catctccatctgattgactaagtaactctacccctagatggtaatggtagctctggcaaa 2512
Query: 804 cccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgcccagcattta 863
|||||| |||||| || || ||||||||||| ||||| | ||||| || || |||||||
Sbjct: 2511 cccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgtccggcattta 2452
Query: 864 gaccagattgggagggagatatagccatcgacactctttgcacagcagaaatgacactac 923
|||||| ||| |||||||| |||||||| |||||||||||||||||||||| | ||||
Sbjct: 2451 gaccagtttgagagggagagatagccattgacactctttgcacagcagaaacaatgctac 2392
Query: 924 gaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctcatacgggaatt 983
| |||||||| || ||||| |||||||| ||||| || || |||| ||| || |||||||
Sbjct: 2391 ggacatattggcgagccatagctgcaacactgtcttggagatgcaactcgtaagggaatt 2332
Query: 984 gaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgcatcccctgagg 1043
|||| ||||| ||||| ||||||| ||| || || ||||||| ||||||||| || ||||
Sbjct: 2331 gaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgcatctccggagg 2272
Query: 1044 cttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|||| | || || || || || ||||||||||||||||||||||
Sbjct: 2271 cttgagctgttgctgaacctacttcaagactagatgccaaatcta 2227
>ref|XM_468564.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2574
Score = 389 bits (196), Expect = e-105
Identities = 577/704 (81%)
Strand = Plus / Minus
Query: 385 tcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgcc 444
|||||| ||||||||||||||||| ||||| ||||||||||| | |||||||||||| |
Sbjct: 2574 tcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcggc 2515
Query: 445 gagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgca 504
||||| ||||| || || || || |||||||||||||| || |||||||||||||||||
Sbjct: 2514 aagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgca 2455
Query: 505 cacgcctgacggcaggtacgcgtagccctgttccattagtttcgagatgtctgagaatag 564
||||||||| |||||||| | | |||||| ||||| | ||| | |||| |||||| |
Sbjct: 2454 cacgcctgatggcaggtagacatggccctgctccatcaatttgggaatgtttgagaacaa 2395
Query: 565 tgctttccttcctgactcgtcgaagatcttgtctagcgtcaggtcttgcagcgcaacaag 624
||||| |||| | ||| || |||||| |||| | || ||||| || | || |||||
Sbjct: 2394 tgcttcttttccaggctcatcaaagatcctgtccaatgtgaggtcctgtaaggcgacaag 2335
Query: 625 agatgtttctaacatgtccagccctgccttgtttgcaaacgtaaacataggtttctcctt 684
|| ||||||| ||||||||| ||||| ||||| ||||| ||||||| ||||| |||||
Sbjct: 2334 ggaagtttctagcatgtccagtcctgctttgttggcaaatgtaaacaccggtttttcctt 2275
Query: 685 aaaggagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcacc 744
|| |||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| |
Sbjct: 2274 gaatgagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgc 2215
Query: 745 agctccatctgattgattaagtaattccatacctagatggtagtgataactctggcaaac 804
| |||||||||||||| ||||||| || | ||||||||||| || || |||||||||||
Sbjct: 2214 atctccatctgattgactaagtaactctacccctagatggtaatggtagctctggcaaac 2155
Query: 805 ccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgcccagcatttag 864
||||| |||||| || || ||||||||||| ||||| | ||||| || || ||||||||
Sbjct: 2154 ccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgtccggcatttag 2095
Query: 865 accagattgggagggagatatagccatcgacactctttgcacagcagaaatgacactacg 924
||||| ||| |||||||| |||||||| |||||||||||||||||||||| | |||||
Sbjct: 2094 accagtttgagagggagagatagccattgacactctttgcacagcagaaacaatgctacg 2035
Query: 925 aacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctcatacgggaattg 984
|||||||| || ||||| |||||||| ||||| || || |||| ||| || ||||||||
Sbjct: 2034 gacatattggcgagccatagctgcaacactgtcttggagatgcaactcgtaagggaattg 1975
Query: 985 aaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgcatcccctgaggc 1044
||| ||||| ||||| ||||||| ||| || || ||||||| ||||||||| || |||||
Sbjct: 1974 aaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgcatctccggaggc 1915
Query: 1045 ttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
||| | || || || || || ||||||||||||||||||||||
Sbjct: 1914 ttgagctgttgctgaacctacttcaagactagatgccaaatcta 1871
>emb|AJ556802.1|OSA556802 Oryza sativa (japonica cultivar-group) partial mRNA for HD-ZIP
protein (hb1 gene)
Length = 1354
Score = 315 bits (159), Expect = 3e-083
Identities = 504/619 (81%)
Strand = Plus / Minus
Query: 470 tcgaaagaaacatggcggcccattcctgacatgcacacgcctgacggcaggtacgcgtag 529
|||||||||||||| || |||||||||||||||||||||||||| |||||||| | | |
Sbjct: 1316 tcgaaagaaacatgccgacccattcctgacatgcacacgcctgatggcaggtagacatgg 1257
Query: 530 ccctgttccattagtttcgagatgtctgagaatagtgctttccttcctgactcgtcgaag 589
||||| ||||| | ||| | |||| |||||| | ||||| ||||| | ||| || |||
Sbjct: 1256 ccctgctccatcaatttgggaatgtttgagaacaatgcttctcttccaggctcatcaaag 1197
Query: 590 atcttgtctagcgtcaggtcttgcagcgcaacaagagatgtttctaacatgtccagccct 649
||| |||| | || ||||| || | || ||||| || ||||||| ||||||||| |||
Sbjct: 1196 atcctgtccaatgtgaggtcctgtaaggcgacaagggaagtttctagcatgtccagtcct 1137
Query: 650 gccttgtttgcaaacgtaaacataggtttctccttaaaggagcagcacagaacagcatct 709
|| ||||| ||||| ||||||| ||||| ||||| || |||||||||| || |||||||
Sbjct: 1136 gctttgttggcaaatgtaaacaccggtttttccttgaatgagcagcacaaaatagcatct 1077
Query: 710 ggatgatgccagagcattttcaacaatgcttcaccagctccatctgattgattaagtaat 769
| | |||||| ||||| ||||||||| ||| || |||| ||||||||| |||||||
Sbjct: 1076 tggtaatgccatagcatcttcaacaattgttctgcatctccgtctgattgactaagtaac 1017
Query: 770 tccatacctagatggtagtgataactctggcaaacccatctagcaagtgtggcagcttca 829
|| | ||||||||||| || || |||||||||||||||| |||||| || || ||||||
Sbjct: 1016 tctacccctagatggtaatggtagctctggcaaacccatcgagcaagggttgctgcttca 957
Query: 830 gggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagatatagcc 889
||||| ||||| | ||||| || || ||||||||||||| ||| | |||||| ||||||
Sbjct: 956 gggaaaccagagattatcctctgtccggcatttagaccagtttgagggggagagatagcc 897
Query: 890 atcgacactctttgcacagcagaaatgacactacgaacatattgacgggccattgctgca 949
|| ||||||||||||||||| |||| | ||||| |||||||| || ||||| ||||||
Sbjct: 896 attgacactctttgcacagcggaaacaatgctacggacatattggcgagccatagctgca 837
Query: 950 acgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcacagatctc 1009
|| ||||| || || |||| ||| || ||||||||||| ||||| ||||| ||||||| |
Sbjct: 836 acactgtcttggagatgcaactcgtaagggaattgaaaagcgatcgtcagaacagatcgc 777
Query: 1010 aaattgcagtcatctggagatgcatcccctgaggcttggggtgcagcagagcccacatca 1069
|| || || ||||||| ||||||||| || |||||||| | || || || || || |||
Sbjct: 776 aagttacaatcatctgcagatgcatctccggaggcttgagctgttgctgaacctacttca 717
Query: 1070 agactagatgccaaatcta 1088
|||||||||||||||||||
Sbjct: 716 agactagatgccaaatcta 698
>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBb0043C10, complete sequence
Length = 108688
Score = 204 bits (103), Expect = 8e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 794 ctctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgc 853
|||||||||||||||| |||||| || || ||||||||||| ||||| | ||||| ||
Sbjct: 81113 ctctggcaaacccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgt 81172
Query: 854 ccagcatttagaccagattgggagggagatatagccatcgacactctttgcacagcagaa 913
|| ||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 81173 ccggcatttagaccagtttgagagggagagatagccattgacactctttgcacagcagaa 81232
Query: 914 atgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctca 973
| | ||||| |||||||| || ||||| |||||||| ||||| || || |||| |||
Sbjct: 81233 acaatgctacggacatattggcgagccatagctgcaacactgtcttggagatgcaactcg 81292
Query: 974 tacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgca 1033
|| ||||||||||| ||||| ||||| ||||||| ||| || || ||||||| |||||||
Sbjct: 81293 taagggaattgaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgca 81352
Query: 1034 tcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|| || |||||||| | || || || || || ||||||||||||||||||||||
Sbjct: 81353 tctccggaggcttgagctgttgctgaacctacttcaagactagatgccaaatcta 81407
Score = 141 bits (71), Expect = 1e-030
Identities = 122/139 (87%)
Strand = Plus / Plus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 80006 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 80065
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 80066 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 80125
Query: 504 acacgcctgacggcaggta 522
|||||||||| ||||||||
Sbjct: 80126 acacgcctgatggcaggta 80144
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 689 gagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcaccagct 748
|||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| || ||
Sbjct: 80893 gagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgcatct 80952
Query: 749 ccatctgattgattaagtaattccatacctagatggta 786
|||||||||||| ||||||| || | |||||||||||
Sbjct: 80953 ccatctgattgactaagtaactctacccctagatggta 80990
>gb|AACV01005752.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005752, whole
genome shotgun sequence
Length = 45615
Score = 204 bits (103), Expect = 8e-050
Identities = 247/295 (83%)
Strand = Plus / Plus
Query: 794 ctctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgc 853
|||||||||||||||| |||||| || || ||||||||||| ||||| | ||||| ||
Sbjct: 25801 ctctggcaaacccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgt 25860
Query: 854 ccagcatttagaccagattgggagggagatatagccatcgacactctttgcacagcagaa 913
|| ||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 25861 ccggcatttagaccagtttgagagggagagatagccattgacactctttgcacagcagaa 25920
Query: 914 atgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctca 973
| | ||||| |||||||| || ||||| |||||||| ||||| || || |||| |||
Sbjct: 25921 acaatgctacggacatattggcgagccatagctgcaacactgtcttggagatgcaactcg 25980
Query: 974 tacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgca 1033
|| ||||||||||| ||||| ||||| ||||||| ||| || || ||||||| |||||||
Sbjct: 25981 taagggaattgaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgca 26040
Query: 1034 tcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|| || |||||||| | || || || || || ||||||||||||||||||||||
Sbjct: 26041 tctccggaggcttgagctgttgctgaacctacttcaagactagatgccaaatcta 26095
Score = 141 bits (71), Expect = 1e-030
Identities = 122/139 (87%)
Strand = Plus / Plus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 24694 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 24753
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 24754 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 24813
Query: 504 acacgcctgacggcaggta 522
|||||||||| ||||||||
Sbjct: 24814 acacgcctgatggcaggta 24832
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 689 gagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcaccagct 748
|||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| || ||
Sbjct: 25581 gagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgcatct 25640
Query: 749 ccatctgattgattaagtaattccatacctagatggta 786
|||||||||||| ||||||| || | |||||||||||
Sbjct: 25641 ccatctgattgactaagtaactctacccctagatggta 25678
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 204 bits (103), Expect = 8e-050
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 794 ctctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgc 853
|||||||||||||||| |||||| || || ||||||||||| ||||| | ||||| ||
Sbjct: 534803 ctctggcaaacccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgt 534744
Query: 854 ccagcatttagaccagattgggagggagatatagccatcgacactctttgcacagcagaa 913
|| ||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 534743 ccggcatttagaccagtttgagagggagagatagccattgacactctttgcacagcagaa 534684
Query: 914 atgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctca 973
| | ||||| |||||||| || ||||| |||||||| ||||| || || |||| |||
Sbjct: 534683 acaatgctacggacatattggcgagccatagctgcaacactgtcttggagatgcaactcg 534624
Query: 974 tacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgca 1033
|| ||||||||||| ||||| ||||| ||||||| ||| || || ||||||| |||||||
Sbjct: 534623 taagggaattgaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgca 534564
Query: 1034 tcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|| || |||||||| | || || || || || ||||||||||||||||||||||
Sbjct: 534563 tctccggaggcttgagctgttgctgaacctacttcaagactagatgccaaatcta 534509
Score = 141 bits (71), Expect = 1e-030
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 535910 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 535851
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 535850 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 535791
Query: 504 acacgcctgacggcaggta 522
|||||||||| ||||||||
Sbjct: 535790 acacgcctgatggcaggta 535772
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 689 gagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcaccagct 748
|||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| || ||
Sbjct: 535023 gagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgcatct 534964
Query: 749 ccatctgattgattaagtaattccatacctagatggta 786
|||||||||||| ||||||| || | |||||||||||
Sbjct: 534963 ccatctgattgactaagtaactctacccctagatggta 534926
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010
genomic scaffold, whole genome shotgun sequence
Length = 13858245
Score = 204 bits (103), Expect = 8e-050
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 794 ctctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgc 853
|||||||||||||||| |||||| || || ||||||||||| ||||| | ||||| ||
Sbjct: 548631 ctctggcaaacccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgt 548572
Query: 854 ccagcatttagaccagattgggagggagatatagccatcgacactctttgcacagcagaa 913
|| ||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 548571 ccggcatttagaccagtttgagagggagagatagccattgacactctttgcacagcagaa 548512
Query: 914 atgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctca 973
| | ||||| |||||||| || ||||| |||||||| ||||| || || |||| |||
Sbjct: 548511 acaatgctacggacatattggcgagccatagctgcaacactgtcttggagatgcaactcg 548452
Query: 974 tacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgca 1033
|| ||||||||||| ||||| ||||| ||||||| ||| || || ||||||| |||||||
Sbjct: 548451 taagggaattgaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgca 548392
Query: 1034 tcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|| || |||||||| | || || || || || ||||||||||||||||||||||
Sbjct: 548391 tctccggaggcttgagctgttgctgaacctacttcaagactagatgccaaatcta 548337
Score = 141 bits (71), Expect = 1e-030
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 549738 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 549679
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 549678 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 549619
Query: 504 acacgcctgacggcaggta 522
|||||||||| ||||||||
Sbjct: 549618 acacgcctgatggcaggta 549600
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 689 gagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcaccagct 748
|||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| || ||
Sbjct: 548851 gagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgcatct 548792
Query: 749 ccatctgattgattaagtaattccatacctagatggta 786
|||||||||||| ||||||| || | |||||||||||
Sbjct: 548791 ccatctgattgactaagtaactctacccctagatggta 548754
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 204 bits (103), Expect = 8e-050
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 794 ctctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgc 853
|||||||||||||||| |||||| || || ||||||||||| ||||| | ||||| ||
Sbjct: 740993 ctctggcaaacccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgt 740934
Query: 854 ccagcatttagaccagattgggagggagatatagccatcgacactctttgcacagcagaa 913
|| ||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 740933 ccggcatttagaccagtttgagagggagagatagccattgacactctttgcacagcagaa 740874
Query: 914 atgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctca 973
| | ||||| |||||||| || ||||| |||||||| ||||| || || |||| |||
Sbjct: 740873 acaatgctacggacatattggcgagccatagctgcaacactgtcttggagatgcaactcg 740814
Query: 974 tacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgca 1033
|| ||||||||||| ||||| ||||| ||||||| ||| || || ||||||| |||||||
Sbjct: 740813 taagggaattgaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgca 740754
Query: 1034 tcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|| || |||||||| | || || || || || ||||||||||||||||||||||
Sbjct: 740753 tctccggaggcttgagctgttgctgaacctacttcaagactagatgccaaatcta 740699
Score = 141 bits (71), Expect = 1e-030
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 742100 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 742041
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 742040 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 741981
Query: 504 acacgcctgacggcaggta 522
|||||||||| ||||||||
Sbjct: 741980 acacgcctgatggcaggta 741962
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 689 gagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcaccagct 748
|||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| || ||
Sbjct: 741213 gagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgcatct 741154
Query: 749 ccatctgattgattaagtaattccatacctagatggta 786
|||||||||||| ||||||| || | |||||||||||
Sbjct: 741153 ccatctgattgactaagtaactctacccctagatggta 741116
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
complete sequence
Length = 36192742
Score = 204 bits (103), Expect = 8e-050
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 794 ctctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgc 853
|||||||||||||||| |||||| || || ||||||||||| ||||| | ||||| ||
Sbjct: 534803 ctctggcaaacccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgt 534744
Query: 854 ccagcatttagaccagattgggagggagatatagccatcgacactctttgcacagcagaa 913
|| ||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 534743 ccggcatttagaccagtttgagagggagagatagccattgacactctttgcacagcagaa 534684
Query: 914 atgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctca 973
| | ||||| |||||||| || ||||| |||||||| ||||| || || |||| |||
Sbjct: 534683 acaatgctacggacatattggcgagccatagctgcaacactgtcttggagatgcaactcg 534624
Query: 974 tacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgca 1033
|| ||||||||||| ||||| ||||| ||||||| ||| || || ||||||| |||||||
Sbjct: 534623 taagggaattgaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgca 534564
Query: 1034 tcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|| || |||||||| | || || || || || ||||||||||||||||||||||
Sbjct: 534563 tctccggaggcttgagctgttgctgaacctacttcaagactagatgccaaatcta 534509
Score = 141 bits (71), Expect = 1e-030
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 535910 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 535851
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 535850 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 535791
Query: 504 acacgcctgacggcaggta 522
|||||||||| ||||||||
Sbjct: 535790 acacgcctgatggcaggta 535772
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 689 gagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcaccagct 748
|||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| || ||
Sbjct: 535023 gagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgcatct 534964
Query: 749 ccatctgattgattaagtaattccatacctagatggta 786
|||||||||||| ||||||| || | |||||||||||
Sbjct: 534963 ccatctgattgactaagtaactctacccctagatggta 534926
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 204 bits (103), Expect = 8e-050
Identities = 247/295 (83%)
Strand = Plus / Minus
Query: 794 ctctggcaaacccatctagcaagtgtggcagcttcagggaagccagaaagcatcctatgc 853
|||||||||||||||| |||||| || || ||||||||||| ||||| | ||||| ||
Sbjct: 534805 ctctggcaaacccatcgagcaagggttgctgcttcagggaaaccagagattatcctctgt 534746
Query: 854 ccagcatttagaccagattgggagggagatatagccatcgacactctttgcacagcagaa 913
|| ||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct: 534745 ccggcatttagaccagtttgagagggagagatagccattgacactctttgcacagcagaa 534686
Query: 914 atgacactacgaacatattgacgggccattgctgcaacgctgtcctgaaggtgcatctca 973
| | ||||| |||||||| || ||||| |||||||| ||||| || || |||| |||
Sbjct: 534685 acaatgctacggacatattggcgagccatagctgcaacactgtcttggagatgcaactcg 534626
Query: 974 tacgggaattgaaaggcgattgtcagcacagatctcaaattgcagtcatctggagatgca 1033
|| ||||||||||| ||||| ||||| ||||||| ||| || || ||||||| |||||||
Sbjct: 534625 taagggaattgaaaagcgatcgtcagaacagatcgcaagttacaatcatctgcagatgca 534566
Query: 1034 tcccctgaggcttggggtgcagcagagcccacatcaagactagatgccaaatcta 1088
|| || |||||||| | || || || || || ||||||||||||||||||||||
Sbjct: 534565 tctccggaggcttgagctgttgctgaacctacttcaagactagatgccaaatcta 534511
Score = 141 bits (71), Expect = 1e-030
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||| ||||||||||||||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 535912 gtcacacaaaggaccagttgacgaaacagaaggccaggcagtgaacattgctatcctcgg 535853
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct: 535852 caagcactttccaagccacggcctgatcgaaagaaacatgccgacccattcctgacatgc 535793
Query: 504 acacgcctgacggcaggta 522
|||||||||| ||||||||
Sbjct: 535792 acacgcctgatggcaggta 535774
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 689 gagcagcacagaacagcatctggatgatgccagagcattttcaacaatgcttcaccagct 748
|||||||||| || ||||||| | | |||||| ||||| ||||||||| ||| || ||
Sbjct: 535025 gagcagcacaaaatagcatcttggtaatgccatagcatcttcaacaattgttctgcatct 534966
Query: 749 ccatctgattgattaagtaattccatacctagatggta 786
|||||||||||| ||||||| || | |||||||||||
Sbjct: 534965 ccatctgattgactaagtaactctacccctagatggta 534928
>dbj|AK102603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098N12, full
insert sequence
Length = 3227
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 2876 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 2817
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 2816 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 2757
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccat 540
|||| || ||||||||| |||| |||||||||||
Sbjct: 2756 acactccaccaggcaggtacacgtaaccctgttccat 2720
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 2436 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 2377
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 2376 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 2317
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 2316 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 2257
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 2256 gatcgtagattacagtcatccatagatgcatcccctg 2220
>dbj|AK102830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109G06, full
insert sequence
Length = 3000
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 2652 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 2593
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 2592 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 2533
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccat 540
|||| || ||||||||| |||| |||||||||||
Sbjct: 2532 acactccaccaggcaggtacacgtaaccctgttccat 2496
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 2212 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 2153
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 2152 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 2093
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 2092 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 2033
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 2032 gatcgtagattacagtcatccatagatgcatcccctg 1996
>gb|AY423716.1| Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper
protein Hox9 mRNA, complete cds
Length = 3174
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 2805 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 2746
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 2745 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 2686
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccat 540
|||| || ||||||||| |||| |||||||||||
Sbjct: 2685 acactccaccaggcaggtacacgtaaccctgttccat 2649
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 2365 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 2306
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 2305 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 2246
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 2245 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 2186
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 2185 gatcgtagattacagtcatccatagatgcatcccctg 2149
>gb|AY554037.1| Oryza sativa (japonica cultivar-group) clone S10307 Hox9 (hox9)
mRNA, partial cds
Length = 562
Score = 137 bits (69), Expect = 2e-029
Identities = 135/157 (85%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 202 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 143
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 142 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 83
Query: 504 acacgcctgacggcaggtacgcgtagccctgttccat 540
|||| || ||||||||| |||| |||||||||||
Sbjct: 82 acactccaccaggcaggtacacgtaaccctgttccat 46
>ref|NM_197030.1| Oryza sativa (japonica cultivar-group) putative homeodomain leucine
zipper protein (OSJNBa0093B11.11), mRNA
Length = 2523
Score = 135 bits (68), Expect = 6e-029
Identities = 134/156 (85%)
Strand = Plus / Minus
Query: 385 tcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgcc 444
|||||||||||||||||||||||||||||| || |||||||| | ||| | || || ||
Sbjct: 2523 tcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctcc 2464
Query: 445 gagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgca 504
|||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| |||
Sbjct: 2463 gagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagca 2404
Query: 505 cacgcctgacggcaggtacgcgtagccctgttccat 540
||| || ||||||||| |||| |||||||||||
Sbjct: 2403 cactccaccaggcaggtacacgtaaccctgttccat 2368
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 2084 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 2025
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 2024 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 1965
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 1964 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 1905
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 1904 gatcgtagattacagtcatccatagatgcatcccctg 1868
>gb|CG206831.1|CG206831 TOS0452 TAMU Rice Japonica Nipponbare BAC Library (Hind III) Oryza
sativa (japonica cultivar-group) genomic clone
TOSJNBh018O04h, DNA sequence
Length = 643
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 498 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 439
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 438 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 379
Query: 504 acac 507
||||
Sbjct: 378 acac 375
>dbj|AK061741.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-E12, full
insert sequence
Length = 1481
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 1214 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 1155
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 1154 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 1095
Query: 504 acac 507
||||
Sbjct: 1094 acac 1091
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 624 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 565
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 564 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 505
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 504 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 445
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 444 gatcgtagattacagtcatccatagatgcatcccctg 408
>gb|AC024594.9| Oryza sativa chromosome 10 BAC OSJNBa0093B11 genomic sequence, complete
sequence
Length = 178692
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Plus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 97450 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 97509
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 97510 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 97569
Query: 504 acac 507
||||
Sbjct: 97570 acac 97573
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Plus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 98338 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 98397
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 98398 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 98457
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 98458 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 98517
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 98518 gatcgtagattacagtcatccatagatgcatcccctg 98554
>gb|AACV01021807.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021807, whole
genome shotgun sequence
Length = 45064
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Plus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 28167 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 28226
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 28227 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 28286
Query: 504 acac 507
||||
Sbjct: 28287 acac 28290
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Plus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 29055 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 29114
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 29115 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 29174
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 29175 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 29234
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 29235 gatcgtagattacagtcatccatagatgcatcccctg 29271
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 4309612 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 4309553
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 4309552 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 4309493
Query: 504 acac 507
||||
Sbjct: 4309492 acac 4309489
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 4308724 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 4308665
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 4308664 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 4308605
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 4308604 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 4308545
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 4308544 gatcgtagattacagtcatccatagatgcatcccctg 4308508
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 5523253 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 5523194
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 5523193 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 5523134
Query: 504 acac 507
||||
Sbjct: 5523133 acac 5523130
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 5522365 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 5522306
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 5522305 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 5522246
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 5522245 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 5522186
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 5522185 gatcgtagattacagtcatccatagatgcatcccctg 5522149
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 16389047 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 16388988
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 16388987 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 16388928
Query: 504 acac 507
||||
Sbjct: 16388927 acac 16388924
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 16388159 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 16388100
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 16388099 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 16388040
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 16388039 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 16387980
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 16387979 gatcgtagattacagtcatccatagatgcatcccctg 16387943
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 17577181 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 17577122
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 17577121 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 17577062
Query: 504 acac 507
||||
Sbjct: 17577061 acac 17577058
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 17576293 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 17576234
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 17576233 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 17576174
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 17576173 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 17576114
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 17576113 gatcgtagattacagtcatccatagatgcatcccctg 17576077
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 127 bits (64), Expect = 1e-026
Identities = 109/124 (87%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgc 443
||||||||||||||||||||||||||||||| || |||||||| | ||| | || || |
Sbjct: 17586221 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtgcacattgttgtcttctc 17586162
Query: 444 cgagcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgc 503
||||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| ||
Sbjct: 17586161 cgagcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagc 17586102
Query: 504 acac 507
||||
Sbjct: 17586101 acac 17586098
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 17585333 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 17585274
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 17585273 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 17585214
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 17585213 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 17585154
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 17585153 gatcgtagattacagtcatccatagatgcatcccctg 17585117
>gb|AU181084.1|AU181084 AU181084 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10307, mRNA sequence
Length = 346
Score = 121 bits (61), Expect = 9e-025
Identities = 106/121 (87%)
Strand = Plus / Minus
Query: 387 acacgaaggaccagttgacgaagcagaacgccaggcagtggatgttgctatcctcgccga 446
|||||||||||||||||||||||||||| || |||||||| | ||| | || || ||||
Sbjct: 235 acacgaaggaccagttgacgaagcagaaggcgaggcagtgtacattgttgtcttctccga 176
Query: 447 gcaccttccacgctacagcttggtcgaaagaaacatggcggcccattcctgacatgcaca 506
|||||||||| ||||||||||| ||||||||||||||||| ||||| || |||| |||||
Sbjct: 175 gcaccttccatgctacagcttgctcgaaagaaacatggcgccccatcccggacaagcaca 116
Query: 507 c 507
|
Sbjct: 115 c 115
>gb|CV152400.1|CV152400 LS11-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 637
Score = 97.6 bits (49), Expect = 1e-017
Identities = 175/217 (80%)
Strand = Plus / Minus
Query: 824 gcttcagggaagccagaaagcatcctatgcccagcatttagaccagattgggagggagat 883
|||||||||||||| |||| ||| | ||||||||||| | ||||| | || |||||
Sbjct: 273 gcttcagggaagcctgaaattatcttctgcccagcattcaagccagaccgagaaggagaa 214
Query: 884 atagccatcgacactctttgcacagcagaaatgacactacgaacatattgacgggccatt 943
|||||||| || ||||| || |||| |||| | ||| || |||||||| ||||||||
Sbjct: 213 atagccattgatactctctgaacagaggaaacaatactgcggacatattgccgggccata 154
Query: 944 gctgcaacgctgtcctgaaggtgcatctcatacgggaattgaaaggcgattgtcagcaca 1003
| |||||||||||| || || ||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 153 gttgcaacgctgtcttggagatgcatttcataagggaactgaaaggcaattgtcagcact 94
Query: 1004 gatctcaaattgcagtcatctggagatgcatcccctg 1040
|||| | ||| |||||||| ||||||||||||||
Sbjct: 93 gatcgtagattacagtcatccatagatgcatcccctg 57
>gb|CB637613.1|CB637613 OSJNEa04I17.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa04I17 3', mRNA sequence
Length = 399
Score = 69.9 bits (35), Expect = 3e-009
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 384 gtcacacgaaggaccagttgacgaagcagaacgccaggcagtg 426
||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 316 gtcacacgaaggaccagttgacgaagcagaaggcgaggcagtg 358
>gb|CX728680.1|CX728680 OSJNEf10P09.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10P09 3', mRNA sequence
Length = 371
Score = 52.0 bits (26), Expect = 7e-004
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 384 gtcacacgaaggaccagttgacgaag 409
||||||||||||||||||||||||||
Sbjct: 346 gtcacacgaaggaccagttgacgaag 371
>gb|CB683050.1|CB683050 OSJNEf10P09.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf10P09 5', mRNA sequence
Length = 371
Score = 46.1 bits (23), Expect = 0.044
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 384 gtcacacgaaggaccagttgacgaagc 410
||||||||||||| |||||||||||||
Sbjct: 27 gtcacacgaaggagcagttgacgaagc 1
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,320,610
Number of Sequences: 438736
Number of extensions: 1320610
Number of successful extensions: 5605
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5376
Number of HSP's gapped (non-prelim): 184
length of query: 1190
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1169
effective length of database: 2,791,206,460
effective search space: 3262920351740
effective search space used: 3262920351740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)