BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448569.2.1
(758 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|D40451.1|D40451 RICS2440A Rice shoot Oryza sativa (japon... 66 3e-008
gb|C72373.1|C72373 C72373 Rice panicle at flowering stage O... 66 3e-008
gb|AU031503.1|AU031503 AU031503 Rice cDNA from immature lea... 66 3e-008
gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing ... 66 3e-008
gb|CF304275.1|CF304275 ABF1--04-I16.g1 ABF3-overexpressing ... 66 3e-008
dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA... 66 3e-008
dbj|AP004705.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 66 3e-008
ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-... 66 3e-008
dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXR... 66 3e-008
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 66 3e-008
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) c... 58 7e-006
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japon... 52 4e-004
gb|AU033172.1|AU033172 AU033172 Rice shoot Oryza sativa (ja... 50 0.002
gb|AU184072.1|AU184072 AU184072 Rice root Oryza sativa (jap... 50 0.002
gb|CB658473.1|CB658473 OSJNEc14I12.r OSJNEc Oryza sativa (j... 50 0.002
gb|AQ159307.1|AQ159307 nbxb0013F13r CUGI Rice BAC Library O... 48 0.007
gb|AQ329113.1|AQ329113 nbxb0044M08r CUGI Rice BAC Library O... 48 0.007
gb|AQ575578.1|AQ575578 nbxb0087F21r CUGI Rice BAC Library O... 48 0.007
gb|AQ795518.1|AQ795518 nbxb0056M12r CUGI Rice BAC Library O... 48 0.007
gb|AU032208.1|AU032208 AU032208 Rice root Oryza sativa (jap... 48 0.007
gb|AU173330.1|AU173330 AU173330 Rice root Oryza sativa (jap... 48 0.007
gb|AU181176.1|AU181176 AU181176 Rice callus (2001) Oryza sa... 48 0.007
dbj|AP004644.1| Oryza sativa (japonica cultivar-group) chro... 48 0.007
dbj|AP004657.2| Oryza sativa (japonica cultivar-group) geno... 48 0.007
dbj|AP005249.3| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AACV01017705.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|XM_480899.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (ja... 44 0.11
gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (ja... 44 0.11
dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 44 0.11
dbj|AP003771.2| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP005445.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|XM_480898.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
dbj|AP003907.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AK110446.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.43
>gb|D40451.1|D40451 RICS2440A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 392
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 135 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 95
>gb|C72373.1|C72373 C72373 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1510_1A, mRNA sequence
Length = 244
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 154 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 114
>gb|AU031503.1|AU031503 AU031503 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61752_1A, mRNA sequence
Length = 627
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 137 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 97
Score = 42.1 bits (21), Expect = 0.43
Identities = 43/49 (87%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatg-aagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| ||||||||||| |||||| |||||||||
Sbjct: 361 gcagtagttgtaggacatgtaagttgcgctcggcccacgcgacggtgcc 313
>gb|CF303459.1|CF303459 ABF1--02-F05.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--02-F05, mRNA sequence
Length = 497
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 385 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 345
>gb|CF304275.1|CF304275 ABF1--04-I16.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--04-I16, mRNA sequence
Length = 588
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 143 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 103
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 366 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 319
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full
insert sequence
Length = 1127
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 639 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 599
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 862 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 815
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full
insert sequence
Length = 1111
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 644 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 604
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 867 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 820
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0682A06
Length = 142023
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 62519 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 62479
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 62742 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 62695
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1111
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 644 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 604
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 867 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 820
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA
Length = 1127
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 639 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 599
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 862 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 815
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan
endotransglycosylase-related protein 5, complete cds
Length = 1280
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 635 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 595
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 858 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 811
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 8089936 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 8089896
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 8255925 cgggttccagatgatggtgtaggt 8255902
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 8090159 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 8090112
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 8250116 ggttccagatgatggtgtaggt 8250095
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 65.9 bits (33), Expect = 3e-008
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 8322410 gcccagtagctgccgtcccacagcgtcgcgtgcagcctcat 8322370
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 8488399 cgggttccagatgatggtgtaggt 8488376
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 8322633 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 8322586
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 8482590 ggttccagatgatggtgtaggt 8482569
>gb|AACV01002670.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002670, whole
genome shotgun sequence
Length = 40539
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| |||| |||| ||||
Sbjct: 6126 gcccagtagctgccgtcccacagcgtcgcgtccagcctcat 6086
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 6349 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 6302
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| |||| |||| ||||
Sbjct: 10685069 gcccagtagctgccgtcccacagcgtcgcgtccagcctcat 10685109
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 10684846 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 10684893
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||||||||||||||||||||| |||| |||| ||||
Sbjct: 35886790 gcccagtagctgccgtcccacagcgtcgcgtccagcctcat 35886830
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 35886567 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 35886614
>gb|D41124.1|D41124 RICS3412A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 371
Score = 52.0 bits (26), Expect = 4e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgca 618
|||||||||||||||||||||| ||| |||||||
Sbjct: 200 gcccagtagctgccgtcccacatcgtcgcgtgca 167
>gb|AU033172.1|AU033172 AU033172 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S4342_6Z, mRNA sequence
Length = 342
Score = 50.1 bits (25), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 99 gcagtagttgtaggacatgtagttgcgctcggcccacgngacggtgcc 52
>gb|AU184072.1|AU184072 AU184072 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0883, mRNA sequence
Length = 412
Score = 50.1 bits (25), Expect = 0.002
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgccccactcggcgct 442
||||||||||||| |||| |||||||||| |||||| ||||||||| ||||||||
Sbjct: 141 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgccgagctcggcgcc 82
Query: 443 gtcaagct 450
||| ||||
Sbjct: 81 gtcnagct 74
>gb|CB658473.1|CB658473 OSJNEc14I12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc14I12 3', mRNA sequence
Length = 595
Score = 50.1 bits (25), Expect = 0.002
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 585 gcccagtagctgccgtcccacagcgtggcgtgcagcgtcat 625
|||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 475 gcccagtaactgccgtcccacagcgtcacgtgcagcctcat 515
>gb|AQ159307.1|AQ159307 nbxb0013F13r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0013F13r, DNA sequence
Length = 594
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 310 cgggttccagatgatggtgtaggt 287
>gb|AQ329113.1|AQ329113 nbxb0044M08r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0044M08r, DNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 310 cgggttccagatgatggtgtaggt 287
>gb|AQ575578.1|AQ575578 nbxb0087F21r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0087F21r, DNA sequence
Length = 794
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 310 cgggttccagatgatggtgtaggt 287
>gb|AQ795518.1|AQ795518 nbxb0056M12r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0056M12r, DNA sequence
Length = 554
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 310 cgggttccagatgatggtgtaggt 287
>gb|AU032208.1|AU032208 AU032208 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R3694_8Z, mRNA sequence
Length = 560
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 243 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 196
>gb|AU173330.1|AU173330 AU173330 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R2204, mRNA sequence
Length = 455
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 137 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 90
>gb|AU181176.1|AU181176 AU181176 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C10287, mRNA sequence
Length = 433
Score = 48.1 bits (24), Expect = 0.007
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 383 gcagtagttgtagcgcatgaagttgcgctccgcccacctgacggtgcc 430
||||||||||||| |||| |||||||||| |||||| |||||||||
Sbjct: 162 gcagtagttgtaggacatgtagttgcgctcggcccacgcgacggtgcc 115
>dbj|AP004644.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone OJ1117_B06,
*** SEQUENCING IN PROGRESS ***
Length = 95739
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 18932 cgggttccagatgatggtgtaggt 18955
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 24741 ggttccagatgatggtgtaggt 24762
>dbj|AP004657.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0031C02
Length = 138843
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 17942 cgggttccagatgatggtgtaggt 17919
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 12133 ggttccagatgatggtgtaggt 12112
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
BAC clone:OSJNBa0087F21
Length = 187401
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 310 cgggttccagatgatggtgtaggt 287
>gb|AACV01017705.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017705, whole
genome shotgun sequence
Length = 21797
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 4429 cgggttccagatgatggtgtaggt 4452
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 10238 ggttccagatgatggtgtaggt 10259
>ref|XM_480899.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 873
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 474 cgggttccagatgatggtgtaggt 451
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067
genomic scaffold, whole genome shotgun sequence
Length = 19501165
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 296596 cgggttccagatgatggtgtaggt 296573
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 290787 ggttccagatgatggtgtaggt 290766
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 710 cgggttccagatgatggtgtaggt 733
||||||||||||||||||||||||
Sbjct: 7898602 cgggttccagatgatggtgtaggt 7898579
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 7892793 ggttccagatgatggtgtaggt 7892772
>gb|AU097514.1|AU097514 AU097514 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5527, mRNA sequence
Length = 367
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 229 gggttccagatgatggagtaggtgtg 204
>gb|AU097516.1|AU097516 AU097516 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S5538, mRNA sequence
Length = 385
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 246 gggttccagatgatggagtaggtgtg 221
>dbj|AK066125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059H08, full
insert sequence
Length = 1208
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 548 gggttccagatgatggagtaggtgtg 523
>dbj|AK104912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-C02, full
insert sequence
Length = 1208
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 548 gggttccagatgatggagtaggtgtg 523
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 6215619 gggttccagatgatggagtaggtgtg 6215594
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0622F03
Length = 170064
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 150700 gggttccagatgatggagtaggtgtg 150675
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0028E05
Length = 157631
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 57909 gggttccagatgatggagtaggtgtg 57884
>gb|AACV01014850.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014850, whole
genome shotgun sequence
Length = 60324
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 46199 gggttccagatgatggagtaggtgtg 46224
>ref|XM_480898.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 861
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 466 ggttccagatgatggtgtaggt 445
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1217_D10
Length = 103188
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 712 ggttccagatgatggtgtaggt 733
||||||||||||||||||||||
Sbjct: 98307 ggttccagatgatggtgtaggt 98286
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 10128452 gggttccagatgatggagtaggtgtg 10128427
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 27827189 gggttccagatgatggagtaggtgtg 27827164
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 711 gggttccagatgatggtgtaggtgtg 736
|||||||||||||||| |||||||||
Sbjct: 28750134 gggttccagatgatggagtaggtgtg 28750109
>dbj|AK110446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-D12, full
insert sequence
Length = 3018
Score = 42.1 bits (21), Expect = 0.43
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 728 gtaggtgtgtgtgtggcggct 748
|||||||||||||||||||||
Sbjct: 2943 gtaggtgtgtgtgtggcggct 2963
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,196,025
Number of Sequences: 438736
Number of extensions: 1196025
Number of successful extensions: 6862
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6666
Number of HSP's gapped (non-prelim): 196
length of query: 758
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 737
effective length of database: 2,791,206,460
effective search space: 2057119161020
effective search space used: 2057119161020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)