BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB669167.1|CB669167 OSJNEe01H08.r OSJNEe Oryza sativa (j... 305 2e-080
dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA... 305 2e-080
gb|AACV01004560.1| Oryza sativa (japonica cultivar-group) c... 305 2e-080
ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA 305 2e-080
dbj|AP004790.3| Oryza sativa (japonica cultivar-group) geno... 305 2e-080
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 305 2e-080
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 305 2e-080
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 305 2e-080
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 305 2e-080
gb|CB669166.1|CB669166 OSJNEe01H08.f OSJNEe Oryza sativa (j... 297 4e-078
gb|AZ126493.1|AZ126493 OSJNBb0078E15r CUGI Rice BAC Library... 276 1e-071
gb|AU162344.1|AU162344 AU162344 Rice cDNA from immature lea... 266 1e-068
gb|CB648301.1|CB648301 OSJNEb11J24.r OSJNEb Oryza sativa (j... 266 1e-068
gb|CB648300.1|CB648300 OSJNEb11J24.f OSJNEb Oryza sativa (j... 170 6e-040
dbj|AK110842.1| Oryza sativa (japonica cultivar-group) cDNA... 98 7e-018
emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC O... 98 7e-018
ref|NT_107151.1| Oryza sativa (japonica cultivar-group) 98 7e-018
gb|AACV01023972.1| Oryza sativa (japonica cultivar-group) c... 98 7e-018
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 98 7e-018
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 98 7e-018
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 98 7e-018
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 98 7e-018
gb|AU091875.1|AU091875 AU091875 Rice panicle at flowering s... 72 4e-010
dbj|AK060863.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK098859.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbar... 56 3e-005
gb|AACV01018663.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AK109538.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
>gb|CB669167.1|CB669167 OSJNEe01H08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01H08 3', mRNA sequence
Length = 825
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 216 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 272
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 273 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 332
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 333 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 392
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 393 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 452
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 453 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 512
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 513 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 572
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 573 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 632
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 633 ctatgaacaccttgt 647
>dbj|AK100984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145D01, full
insert sequence
Length = 1910
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Minus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 1798 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 1742
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 1741 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 1682
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 1681 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 1622
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 1621 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 1562
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 1561 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 1502
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 1501 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 1442
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 1441 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 1382
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 1381 ctatgaacaccttgt 1367
>gb|AACV01004560.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004560, whole
genome shotgun sequence
Length = 71882
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 13808 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 13864
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 13865 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 13924
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 13925 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 13984
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 13985 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 14044
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 14045 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 14104
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 14105 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 14164
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 14165 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 14224
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 14225 ctatgaacaccttgt 14239
>ref|XM_466075.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1910
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Minus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 1798 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 1742
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 1741 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 1682
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 1681 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 1622
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 1621 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 1562
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 1561 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 1502
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 1501 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 1442
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 1441 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 1382
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 1381 ctatgaacaccttgt 1367
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0476H10
Length = 151703
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 88708 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 88764
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 88765 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 88824
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 88825 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 88884
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 88885 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 88944
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 88945 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 89004
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 89005 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 89064
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 89065 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 89124
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 89125 ctatgaacaccttgt 89139
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 655423 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 655479
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 655480 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 655539
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 655540 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 655599
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 655600 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 655659
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 655660 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 655719
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 655720 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 655779
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 655780 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 655839
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 655840 ctatgaacaccttgt 655854
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 5843561 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 5843617
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 5843618 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 5843677
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 5843678 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 5843737
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 5843738 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 5843797
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 5843798 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 5843857
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 5843858 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 5843917
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 5843918 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 5843977
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 5843978 ctatgaacaccttgt 5843992
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 19296625 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 19296681
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 19296682 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 19296741
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 19296742 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 19296801
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 19296802 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 19296861
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 19296862 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 19296921
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 19296922 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 19296981
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 19296982 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 19297041
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 19297042 ctatgaacaccttgt 19297056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 305 bits (154), Expect = 2e-080
Identities = 364/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 19471181 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 19471237
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 19471238 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 19471297
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 19471298 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 19471357
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 19471358 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 19471417
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 19471418 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 19471477
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 19471478 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 19471537
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 19471538 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 19471597
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 19471598 ctatgaacaccttgt 19471612
>gb|CB669166.1|CB669166 OSJNEe01H08.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01H08 5', mRNA sequence
Length = 664
Score = 297 bits (150), Expect = 4e-078
Identities = 363/435 (83%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 102 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 158
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 159 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 218
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 219 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 278
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 279 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 338
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 339 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 398
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||| | |||||||
Sbjct: 399 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatgggggttctcca 458
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || |||||||||||||||| ||||||| |||||||
Sbjct: 459 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagtacgaattct 518
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 519 ctatgaacaccttgt 533
>gb|AZ126493.1|AZ126493 OSJNBb0078E15r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0078E15r, DNA
sequence
Length = 414
Score = 276 bits (139), Expect = 1e-071
Identities = 343/412 (83%), Gaps = 4/412 (0%)
Strand = Plus / Minus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 409 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 353
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 352 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 293
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 292 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 233
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 232 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 173
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 172 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 113
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 112 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 53
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagta 613
|||||| || |||||||| || |||||||||||||||| |||||||
Sbjct: 52 tcatctcctcgtacttatctactagaccagcccagaagccatgtaagtagta 1
>gb|AU162344.1|AU162344 AU162344 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E61345, mRNA sequence
Length = 613
Score = 266 bits (134), Expect = 1e-068
Identities = 318/379 (83%), Gaps = 4/379 (1%)
Strand = Plus / Minus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |
Sbjct: 393 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca---a 337
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| | || ||||| |||||||||| ||| | ||||||
Sbjct: 336 ctctcatcaggacttttcaagaagtggtcgatatcttggccttcacatcaagattctcct 277
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | || ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 276 tgtcatcaataggctttgtggtctgattcctgaccctcttgatcttggggctttcgagcc 217
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 216 ccttgtgagcaaacccatagagccgcagcacctggttatcggcaaaattaaatgctcgct 157
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| |||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 156 ccatactcctgagacaccgctccacaggataatccccatagcttccacatggcttgcacc 97
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||||| |||||||
Sbjct: 96 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatggtggttctcca 37
Query: 562 tcatctnntcatacttatc 580
|||||| || ||||||||
Sbjct: 36 tcatctcctcgtacttatc 18
>gb|CB648301.1|CB648301 OSJNEb11J24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11J24 3', mRNA sequence
Length = 787
Score = 266 bits (134), Expect = 1e-068
Identities = 359/435 (82%), Gaps = 4/435 (0%)
Strand = Plus / Plus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaaccaccaa 262
||||||||||||||||||||| | ||||||||||||||||| ||||||| ||| ||
Sbjct: 185 tcacaaaatgctctgaccttgaaaaaagccaaagcaagtatgctattgccatacc---aa 241
Query: 263 ctctcatctgaacttt-caggaaattgtagatattttggccttcatatctaagttctcca 321
|||||||| | ||||| || ||| || ||||| |||||||||| ||| | ||||||
Sbjct: 242 ctctcatcaggacttttcaagaaggggtcgatatcttggccttcacatcaagattctcct 301
Query: 322 catcattaattggtctagttgtctgatccctgaatctcttgatcttggggctttccagcc 381
|||| ||| || | | ||||||| ||||| |||||||||||||||||||| ||||
Sbjct: 302 tgtcatcaataggctttggggtctgattcctgaccctcttgatcttggggctttcgagcc 361
Query: 382 ccttgtgtgagaaaccatatagccgaagcacctggttgtcggcaaaattaaacgctcgct 441
||||||| | || ||||| ||||| ||||||||||| |||||||||||||| |||||||
Sbjct: 362 ccttgtgagcaaacccataaagccgcagcacctggttatcggcaaaattaaatgctcgct 421
Query: 442 ccatgctcctgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacc 501
|||| ||||||| || |||||||| || |||||||||||||| ||||||||||||||||
Sbjct: 422 ccatactcctgaaacaccgctccacaggataatccccatagcttccacatggcttgcacc 481
Query: 502 caacaaagtgagtcacgaaaggccaccgctcgtcgccgaggcctnnntggtgattctcca 561
| ||||| ||||||||||| ||||||||||| || ||||| || ||| | |||||||
Sbjct: 482 cgacaaaatgagtcacgaatggccaccgctcatccccgagccccggatgggggttctcca 541
Query: 562 tcatctnntcatacttatcnaccnacncagcccagaagccatgcnagtagtaggaattct 621
|||||| || |||||||| || | ||||||| |||||||| ||||||| |||||||
Sbjct: 542 tcatctcctcgtacttatctactaaaccagcccaaaagccatgtaagtagtacgaattct 601
Query: 622 caatgaacaccttgt 636
| |||||||||||||
Sbjct: 602 ctatgaacaccttgt 616
>gb|CB648300.1|CB648300 OSJNEb11J24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11J24 5', mRNA sequence
Length = 336
Score = 170 bits (86), Expect = 6e-040
Identities = 198/237 (83%)
Strand = Plus / Plus
Query: 344 ctgatccctgaatctcttgatcttggggctttccagccccttgtgtgagaaaccatatag 403
||||| ||||| |||||||||||||||||||| ||||||||||| | || ||||| ||
Sbjct: 86 ctgattcctgaccctcttgatcttggggctttcgagccccttgtgagcaaacccataaag 145
Query: 404 ccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgctc 463
||| | ||||||||| |||||||||||||| |||| |||||| ||||||| || |||||
Sbjct: 146 ccgcaccacctggttatcggcaaaattaaatgctccctccatactcctgaaacaccgctc 205
Query: 464 cactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaagg 523
||| || ||||||||||| || ||||||||||||| ||| ||||| |||||||| || ||
Sbjct: 206 cacaggataatccccataccttccacatggcttgcccccgacaaaatgagtcacaaatgg 265
Query: 524 ccaccgctcgtcgccgaggcctnnntggtgattctccatcatctnntcatacttatc 580
|| |||||| || ||||| || ||||| ||||||||||||| || ||||||||
Sbjct: 266 cccccgctcatccccgagccccggatggtggttctccatcatctcctcgtacttatc 322
>dbj|AK110842.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B07, full
insert sequence
Length = 1540
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Minus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 1321 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 1262
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 1261 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 1202
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 1201 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 1156
>emb|AL928755.5|CNS08CBS Oryza sativa chromosome 12, . BAC OSJNBb0050K10 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 122901
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Minus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 110897 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 110838
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 110837 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 110778
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 110777 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 110732
>ref|NT_107151.1| Oryza sativa (japonica cultivar-group)
Length = 901339
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 463488 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 463547
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 463548 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 463607
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 463608 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 463653
>gb|AACV01023972.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023972, whole
genome shotgun sequence
Length = 17692
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 9995 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 10054
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 10055 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 10114
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 10115 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 10160
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 2280054 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 2280113
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 2280114 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 2280173
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 2280174 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 2280219
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 2280054 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 2280113
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 2280114 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 2280173
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 2280174 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 2280219
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 2432595 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 2432654
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 2432655 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 2432714
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 2432715 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 2432760
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 97.6 bits (49), Expect = 7e-018
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 402 agccgaagcacctggttgtcggcaaaattaaacgctcgctccatgctcctgaggcagcgc 461
||||| ||||||||||||||||| || || ||||| |||||||||| | |||||||||
Sbjct: 2432539 agccggagcacctggttgtcggcgaagttgaacgcgcgctccatgccgcccaggcagcgc 2432598
Query: 462 tccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagtcacgaaa 521
||| ||||| || || |||| || || ||||||||||| || ||||| || |||||
Sbjct: 2432599 tcccgcgggtagtcaccgtagccgccgcacggcttgcacccgacgaagtgggtgacgaac 2432658
Query: 522 ggccaccgctcgtcgccgaggcctnnntggtgattctccatcatct 567
||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 2432659 ggccaccgctcgtcgccgaggcccgggtggtgcctctccatcatct 2432704
>gb|AU091875.1|AU091875 AU091875 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2302, mRNA sequence
Length = 370
Score = 71.9 bits (36), Expect = 4e-010
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 203 tcacaaaatgctctgaccttgttgatagccaaagcaagtatgcaattgccaaacca 258
||||||||||||||||||||| || ||||||||||||||||| ||||||| ||||
Sbjct: 247 tcacaaaatgctctgaccttgaagagagccaaagcaagtatgctattgccatacca 192
Score = 46.1 bits (23), Expect = 0.024
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 357 ctcttgatcttggggctttccagccccttgtgtgagaaaccatatagccgaagcacctgg 416
||||||||||||||| |||| ||||| ||||| | || ||||| ||||| |||||||||
Sbjct: 98 ctcttgatcttgggggtttcgagccc-ttgtgagc-aacccatagagccgcagcacctgg 41
Query: 417 ttgtcggcaaa 427
|| ||||||||
Sbjct: 40 ttatcggcaaa 30
>dbj|AK060863.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G06, full
insert sequence
Length = 1245
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 860 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 801
Query: 511 gagt 514
||||
Sbjct: 800 gagt 797
>dbj|AK098859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N01, full
insert sequence
Length = 1199
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 816 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 757
Query: 511 gagt 514
||||
Sbjct: 756 gagt 753
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0036G02, from chromosome 3, complete sequence
Length = 153308
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 75654 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 75713
Query: 511 gagt 514
||||
Sbjct: 75714 gagt 75717
>gb|AACV01018663.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018663, whole
genome shotgun sequence
Length = 28704
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 2847 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 2788
Query: 511 gagt 514
||||
Sbjct: 2787 gagt 2784
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 1863758 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 1863817
Query: 511 gagt 514
||||
Sbjct: 1863818 gagt 1863821
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 14009876 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 14009817
Query: 511 gagt 514
||||
Sbjct: 14009816 gagt 14009813
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 21611882 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 21611823
Query: 511 gagt 514
||||
Sbjct: 21611822 gagt 21611819
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 10517942 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 10518001
Query: 511 gagt 514
||||
Sbjct: 10518002 gagt 10518005
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 56.0 bits (28), Expect = 3e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 451 tgaggcagcgctccactgggtaatccccatagctcccacatggcttgcacccaacaaagt 510
||||||| | |||||| |||||||||||| | ||||||| |||||||| || |||||||
Sbjct: 10519841 tgaggcacctctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagt 10519900
Query: 511 gagt 514
||||
Sbjct: 10519901 gagt 10519904
>dbj|AK109538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-D08, full
insert sequence
Length = 2492
Score = 52.0 bits (26), Expect = 4e-004
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 461 ctccactgggtaatccccatagctcccacatggcttgcacccaacaaagtgagt 514
|||||| |||||||||||| | ||||||| |||||||| || |||||||||||
Sbjct: 170 ctccacagggtaatccccaaacttcccacacggcttgcatccgacaaagtgagt 223
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 712,055
Number of Sequences: 438736
Number of extensions: 712055
Number of successful extensions: 3416
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3252
Number of HSP's gapped (non-prelim): 142
length of query: 677
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 656
effective length of database: 2,791,206,460
effective search space: 1831031437760
effective search space used: 1831031437760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)