BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF303807.1|CF303807 ABF1--03-E08.g1 ABF3-overexpressing ... 456 e-125
dbj|AK062170.1| Oryza sativa (japonica cultivar-group) cDNA... 436 e-119
dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA... 327 1e-086
gb|AC124143.2| Oryza sativa (japonica cultivar-group) chrom... 299 3e-078
gb|AACV01012714.1| Oryza sativa (japonica cultivar-group) c... 299 3e-078
ref|NT_107221.1| Oryza sativa (japonica cultivar-group) 299 3e-078
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 299 3e-078
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 299 3e-078
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 299 3e-078
gb|CF309353.1|CF309353 ABF--03-I07.b1 ABF3-overexpressing t... 248 9e-063
gb|CF304049.1|CF304049 ABF1--03-O22.g1 ABF3-overexpressing ... 244 1e-061
gb|CF323603.1|CF323603 HDN--04-E15.g1 OsHDAC1-overexpressin... 210 2e-051
gb|CF305577.1|CF305577 HDA1--01-B17.g1 OsHDAC1-overexpressi... 137 2e-029
ref|NM_191956.1| Oryza sativa (japonica cultivar-group), p... 137 2e-029
gb|CF329170.1|CF329170 NACL--04-G09.b1 Rice callus plasmid ... 125 9e-026
dbj|AK103776.1| Oryza sativa (japonica cultivar-group) cDNA... 125 9e-026
gb|AACV01002084.1| Oryza sativa (japonica cultivar-group) c... 125 9e-026
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 125 9e-026
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 125 9e-026
dbj|AP003706.3| Oryza sativa (japonica cultivar-group) geno... 125 9e-026
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 125 9e-026
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 125 9e-026
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 125 9e-026
gb|C73003.1|C73003 C73003 Rice panicle at flowering stage O... 121 1e-024
gb|AU069424.1|AU069424 AU069424 Rice callus Oryza sativa (j... 117 2e-023
gb|AU095170.1|AU095170 AU095170 Rice cDNA from immature lea... 92 1e-015
gb|AU031684.1|AU031684 AU031684 Rice root Oryza sativa (jap... 86 8e-014
gb|CF309354.1|CF309354 ABF--03-I07.g1 ABF3-overexpressing t... 78 2e-011
gb|D23888.1|D23888 RICR0521A Rice root Oryza sativa (japoni... 76 7e-011
gb|CF324424.1|CF324424 HDN--06-H24.g1 OsHDAC1-overexpressin... 76 7e-011
gb|AQ256200.1|AQ256200 nbxb0015D24r CUGI Rice BAC Library O... 58 2e-005
gb|CA999254.1|CA999254 S234P_D04 Rice cold stress germinati... 56 7e-005
gb|CB674923.1|CB674923 OSJNEe10E09.r OSJNEe Oryza sativa (j... 54 3e-004
dbj|AK058446.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
dbj|AK067927.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.004
gb|AC130603.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|AC132485.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.004
gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) c... 50 0.004
ref|NT_107217.1| Oryza sativa (japonica cultivar-group) 50 0.004
gb|C27876.1|C27876 C27876 Rice callus cDNA Oryza sativa (ja... 48 0.017
gb|AU100890.1|AU100890 AU100890 Rice callus Oryza sativa (j... 48 0.017
gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.017
gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbar... 48 0.017
gb|AACV01006475.1| Oryza sativa (japonica cultivar-group) c... 48 0.017
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 48 0.017
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.017
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.017
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.017
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.017
>gb|CF303807.1|CF303807 ABF1--03-E08.g1 ABF3-overexpressing transgenic rice lambda phage cDNA
library (ABF1) Oryza sativa (japonica cultivar-group)
cDNA clone ABF1--03-E08, mRNA sequence
Length = 638
Score = 456 bits (230), Expect = e-125
Identities = 495/582 (85%), Gaps = 1/582 (0%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 593 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 534
Query: 996 aatcttggagactccc-caaagcctgagcaacggtaggaaaacctagggcttccgagtgg 1054
| ||| ||||||||| |||||||||||||| |||||||||| | ||| |||| |||||
Sbjct: 533 agtctgtgagactcccncaaagcctgagcaatggtaggaaaatcctgggtttccaagtgg 474
Query: 1055 tgttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaact 1114
|| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 473 tgctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaact 414
Query: 1115 tcgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagc 1174
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| ||||||
Sbjct: 413 ccgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagt 354
Query: 1175 attgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggc 1234
| |||||| | || |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 353 accaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggc 294
Query: 1235 agattccgcaaaatcaggacgaccgcttccatttggaactaggtagtctggattaacatg 1294
|||||||||||||||||||| ||| | |||| |||||| | ||| ||||||||||||||
Sbjct: 293 agattccgcaaaatcaggacaaccacctccacgtggaaccatgtattctggattaacatg 234
Query: 1295 gggaagacatggtttcagtctctttgcatttggtgcagacatgtgagatcctgaaactga 1354
||||||||||||||||| || ||||| || |||| |||| || |||||||| |||||
Sbjct: 233 gggaagacatggtttcaatcgctttgaatggggtgtggacaaatgggatcctgacactga 174
Query: 1355 actagtcagctcaatctcccaaggagaaatcctgtttggttgacgaaaatctacatcgtc 1414
||||||||||||||||||||||||||| | |||||||||| |||| || || | |||||
Sbjct: 173 actagtcagctcaatctcccaaggagagaccctgtttggtcgacggaactcagcgtcgtc 114
Query: 1415 atcccatcggaccatcaaacatttccatttcgaaccacgccacatggggtcagcatcacc 1474
|||||| | |||| |||||||||||||||||||||| ||||||| ||||| | ||||||
Sbjct: 113 atcccacctcaccaacaaacatttccatttcgaaccatgccacatagggtctgtatcacc 54
Query: 1475 aattcctgctatgatccctgtgcatcttctttcagaagcatc 1516
| |||| | || ||||| ||| | |||||||||| ||||||
Sbjct: 53 acttccagtaattatcccggtgtaccttctttcagtagcatc 12
>dbj|AK062170.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C02, full
insert sequence
Length = 1478
Score = 436 bits (220), Expect = e-119
Identities = 439/512 (85%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 512 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 453
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 452 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 393
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 392 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 333
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 332 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 273
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 213
Query: 1236 gattccgcaaaatcaggacgaccgcttccatttggaactaggtagtctggattaacatgg 1295
||||||||||||||||||| ||| | |||| |||||| | ||| |||||||||||||||
Sbjct: 212 gattccgcaaaatcaggacaaccacctccacgtggaaccatgtattctggattaacatgg 153
Query: 1296 ggaagacatggtttcagtctctttgcatttggtgcagacatgtgagatcctgaaactgaa 1355
|||||||||||||||| || ||||| || |||| |||| || |||||||| ||||||
Sbjct: 152 ggaagacatggtttcaatcgctttgaatggggtgtggacaaatgggatcctgacactgaa 93
Query: 1356 ctagtcagctcaatctcccaaggagaaatcctgtttggttgacgaaaatctacatcgtca 1415
|||||||||||||||||||||||||| | |||||||||| |||| || || | ||||||
Sbjct: 92 ctagtcagctcaatctcccaaggagagaccctgtttggtcgacggaactcagcgtcgtca 33
Query: 1416 tcccatcggaccatcaaacatttccatttcga 1447
||||| | |||| ||||||||||||||||||
Sbjct: 32 tcccacctcaccaacaaacatttccatttcga 1
Score = 109 bits (55), Expect = 5e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 1114 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 1055
Query: 394 catgaacggtggcacagctgttgcccagcgatttcggcacttg 436
|||||||||| ||||| || |||||||| ||||| ||||||||
Sbjct: 1054 catgaacggtagcacaactattgcccagggattttggcacttg 1012
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 961 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 916
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 674 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 615
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 614 ccatgaaaagca 603
>dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E23, full
insert sequence
Length = 2712
Score = 327 bits (165), Expect = 1e-086
Identities = 321/373 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 1762 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 1703
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 1702 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 1643
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 1642 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 1583
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| ||||||||||||| ||| |||||| |
Sbjct: 1582 cgctcatcgatgtactgtaaatgccttgcttcatatggctgagaagtagcagcagcagta 1523
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1522 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 1463
Query: 1236 gattccgcaaaatcaggacgaccgcttccatttggaactaggtagtctggattaacatgg 1295
||||||||||||||||||| ||| | | || |||||| | ||| |||||||||||||||
Sbjct: 1462 gattccgcaaaatcaggacaaccacctgcacgtggaaccatgtattctggattaacatgg 1403
Query: 1296 ggaagacatggtt 1308
|||||||||||||
Sbjct: 1402 ggaagacatggtt 1390
Score = 109 bits (55), Expect = 5e-021
Identities = 91/103 (88%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 2364 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 2305
Query: 394 catgaacggtggcacagctgttgcccagcgatttcggcacttg 436
|||||||||| ||||| || |||||||| ||||| ||||||||
Sbjct: 2304 catgaacggtagcacaactattgcccagggattttggcacttg 2262
Score = 87.7 bits (44), Expect = 2e-014
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 1729 catttttaagctgagctgcacggcgcactccaagtcttagctccccattatcacccctca 1788
||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||| | ||
Sbjct: 967 catttgtaagctgagctgcacggcgaactcccagtcttagctccccatcatcacctcgca 908
Query: 1789 aaaatagt 1796
||||||||
Sbjct: 907 aaaatagt 900
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 2211 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 2166
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 1924 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 1865
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 1864 ccatgaaaagca 1853
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0053D02, complete sequence
Length = 157106
Score = 299 bits (151), Expect = 3e-078
Identities = 277/319 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 48715 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 48656
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 48655 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 48596
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 48595 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 48536
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 48535 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 48476
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 48475 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 48416
Query: 1236 gattccgcaaaatcaggac 1254
|||||||||||||||||||
Sbjct: 48415 gattccgcaaaatcaggac 48397
Score = 174 bits (88), Expect = 1e-040
Identities = 145/164 (88%)
Strand = Plus / Minus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacattaggt 1679
||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||| |
Sbjct: 46556 ctgggattgtagtatatgttgaacacactttctgtagccactgcatgtgcaacattggca 46497
Query: 1680 agtgaaccaagatttgagcactggttataaagagctggaaaagcagatccatttttaagc 1739
|||| ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 46496 agtgtaccaagattagaacactggttgtaaagtgctggaaaagcagacccatttttaagc 46437
Query: 1740 tgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
|||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 46436 tgagctgcacggcgaactcccagtcttagctccccatcatcacc 46393
Score = 129 bits (65), Expect = 6e-027
Identities = 131/153 (85%)
Strand = Plus / Minus
Query: 1268 tggaactaggtagtctggattaacatggggaagacatggtttcagtctctttgcatttgg 1327
|||||| | ||| ||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 48300 tggaaccatgtattctggattaacatggggaagacatggtttcaatcgctttgaatgggg 48241
Query: 1328 tgcagacatgtgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcct 1387
|| |||| || |||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 48240 tgtggacaaatgggatcctgacactgaactagtcagctcaatctcccaaggagagaccct 48181
Query: 1388 gtttggttgacgaaaatctacatcgtcatccca 1420
||||||| |||| || || | |||||||||||
Sbjct: 48180 gtttggtcgacggaactcagcgtcgtcatccca 48148
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 49389 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 49330
Query: 394 catgaac 400
|||||||
Sbjct: 49329 catgaac 49323
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 49164 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 49119
Score = 63.9 bits (32), Expect = 3e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1425 accatcaaacatttccatttcgaaccacgccacatggggtcagcatcaccaattcc 1480
|||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||
Sbjct: 47265 accaacaaacatttccatttcgaaccatgccacatagggtctgtatcaccacttcc 47210
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
|||||||||| |||||| || || |||||||||| |||||||||| ||| ||||||||
Sbjct: 47099 cttctttcagtagcatcttcactttcatatctcattttgaacctcagcccaacagaaaat 47040
Query: 1560 ggttgactgaagctcttgataaacttc 1586
||||| |||| ||| || || ||||||
Sbjct: 47039 ggttggctgaggcttttcatgaacttc 47013
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 48877 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 48818
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 48817 ccatgaaaagca 48806
>gb|AACV01012714.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012714, whole
genome shotgun sequence
Length = 22278
Score = 299 bits (151), Expect = 3e-078
Identities = 277/319 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 10331 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 10272
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 10271 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 10212
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 10211 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 10152
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 10151 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 10092
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 10091 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 10032
Query: 1236 gattccgcaaaatcaggac 1254
|||||||||||||||||||
Sbjct: 10031 gattccgcaaaatcaggac 10013
Score = 174 bits (88), Expect = 1e-040
Identities = 145/164 (88%)
Strand = Plus / Minus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacattaggt 1679
||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||| |
Sbjct: 8172 ctgggattgtagtatatgttgaacacactttctgtagccactgcatgtgcaacattggca 8113
Query: 1680 agtgaaccaagatttgagcactggttataaagagctggaaaagcagatccatttttaagc 1739
|||| ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 8112 agtgtaccaagattagaacactggttgtaaagtgctggaaaagcagacccatttttaagc 8053
Query: 1740 tgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
|||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 8052 tgagctgcacggcgaactcccagtcttagctccccatcatcacc 8009
Score = 129 bits (65), Expect = 6e-027
Identities = 131/153 (85%)
Strand = Plus / Minus
Query: 1268 tggaactaggtagtctggattaacatggggaagacatggtttcagtctctttgcatttgg 1327
|||||| | ||| ||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 9916 tggaaccatgtattctggattaacatggggaagacatggtttcaatcgctttgaatgggg 9857
Query: 1328 tgcagacatgtgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcct 1387
|| |||| || |||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 9856 tgtggacaaatgggatcctgacactgaactagtcagctcaatctcccaaggagagaccct 9797
Query: 1388 gtttggttgacgaaaatctacatcgtcatccca 1420
||||||| |||| || || | |||||||||||
Sbjct: 9796 gtttggtcgacggaactcagcgtcgtcatccca 9764
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 11005 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 10946
Query: 394 catgaac 400
|||||||
Sbjct: 10945 catgaac 10939
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 10780 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 10735
Score = 63.9 bits (32), Expect = 3e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1425 accatcaaacatttccatttcgaaccacgccacatggggtcagcatcaccaattcc 1480
|||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||
Sbjct: 8881 accaacaaacatttccatttcgaaccatgccacatagggtctgtatcaccacttcc 8826
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
|||||||||| |||||| || || |||||||||| |||||||||| ||| ||||||||
Sbjct: 8715 cttctttcagtagcatcttcactttcatatctcattttgaacctcagcccaacagaaaat 8656
Query: 1560 ggttgactgaagctcttgataaacttc 1586
||||| |||| ||| || || ||||||
Sbjct: 8655 ggttggctgaggcttttcatgaacttc 8629
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 10493 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 10434
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 10433 ccatgaaaagca 10422
>ref|NT_107221.1| Oryza sativa (japonica cultivar-group)
Length = 824362
Score = 299 bits (151), Expect = 3e-078
Identities = 277/319 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 414428 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 414369
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 414368 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 414309
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 414308 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 414249
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 414248 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 414189
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 414188 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 414129
Query: 1236 gattccgcaaaatcaggac 1254
|||||||||||||||||||
Sbjct: 414128 gattccgcaaaatcaggac 414110
Score = 174 bits (88), Expect = 1e-040
Identities = 145/164 (88%)
Strand = Plus / Minus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacattaggt 1679
||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||| |
Sbjct: 412269 ctgggattgtagtatatgttgaacacactttctgtagccactgcatgtgcaacattggca 412210
Query: 1680 agtgaaccaagatttgagcactggttataaagagctggaaaagcagatccatttttaagc 1739
|||| ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 412209 agtgtaccaagattagaacactggttgtaaagtgctggaaaagcagacccatttttaagc 412150
Query: 1740 tgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
|||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 412149 tgagctgcacggcgaactcccagtcttagctccccatcatcacc 412106
Score = 129 bits (65), Expect = 6e-027
Identities = 131/153 (85%)
Strand = Plus / Minus
Query: 1268 tggaactaggtagtctggattaacatggggaagacatggtttcagtctctttgcatttgg 1327
|||||| | ||| ||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 414013 tggaaccatgtattctggattaacatggggaagacatggtttcaatcgctttgaatgggg 413954
Query: 1328 tgcagacatgtgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcct 1387
|| |||| || |||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 413953 tgtggacaaatgggatcctgacactgaactagtcagctcaatctcccaaggagagaccct 413894
Query: 1388 gtttggttgacgaaaatctacatcgtcatccca 1420
||||||| |||| || || | |||||||||||
Sbjct: 413893 gtttggtcgacggaactcagcgtcgtcatccca 413861
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 415102 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 415043
Query: 394 catgaac 400
|||||||
Sbjct: 415042 catgaac 415036
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 414877 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 414832
Score = 63.9 bits (32), Expect = 3e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1425 accatcaaacatttccatttcgaaccacgccacatggggtcagcatcaccaattcc 1480
|||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||
Sbjct: 412978 accaacaaacatttccatttcgaaccatgccacatagggtctgtatcaccacttcc 412923
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
|||||||||| |||||| || || |||||||||| |||||||||| ||| ||||||||
Sbjct: 412812 cttctttcagtagcatcttcactttcatatctcattttgaacctcagcccaacagaaaat 412753
Query: 1560 ggttgactgaagctcttgataaacttc 1586
||||| |||| ||| || || ||||||
Sbjct: 412752 ggttggctgaggcttttcatgaacttc 412726
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 414590 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 414531
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 414530 ccatgaaaagca 414519
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 299 bits (151), Expect = 3e-078
Identities = 277/319 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 10266952 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 10266893
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 10266892 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 10266833
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 10266832 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 10266773
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 10266772 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 10266713
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 10266712 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 10266653
Query: 1236 gattccgcaaaatcaggac 1254
|||||||||||||||||||
Sbjct: 10266652 gattccgcaaaatcaggac 10266634
Score = 174 bits (88), Expect = 1e-040
Identities = 145/164 (88%)
Strand = Plus / Minus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacattaggt 1679
||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||| |
Sbjct: 10264793 ctgggattgtagtatatgttgaacacactttctgtagccactgcatgtgcaacattggca 10264734
Query: 1680 agtgaaccaagatttgagcactggttataaagagctggaaaagcagatccatttttaagc 1739
|||| ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 10264733 agtgtaccaagattagaacactggttgtaaagtgctggaaaagcagacccatttttaagc 10264674
Query: 1740 tgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
|||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 10264673 tgagctgcacggcgaactcccagtcttagctccccatcatcacc 10264630
Score = 129 bits (65), Expect = 6e-027
Identities = 131/153 (85%)
Strand = Plus / Minus
Query: 1268 tggaactaggtagtctggattaacatggggaagacatggtttcagtctctttgcatttgg 1327
|||||| | ||| ||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 10266537 tggaaccatgtattctggattaacatggggaagacatggtttcaatcgctttgaatgggg 10266478
Query: 1328 tgcagacatgtgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcct 1387
|| |||| || |||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 10266477 tgtggacaaatgggatcctgacactgaactagtcagctcaatctcccaaggagagaccct 10266418
Query: 1388 gtttggttgacgaaaatctacatcgtcatccca 1420
||||||| |||| || || | |||||||||||
Sbjct: 10266417 gtttggtcgacggaactcagcgtcgtcatccca 10266385
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 10267626 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 10267567
Query: 394 catgaac 400
|||||||
Sbjct: 10267566 catgaac 10267560
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 10267401 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 10267356
Score = 63.9 bits (32), Expect = 3e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1425 accatcaaacatttccatttcgaaccacgccacatggggtcagcatcaccaattcc 1480
|||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||
Sbjct: 10265502 accaacaaacatttccatttcgaaccatgccacatagggtctgtatcaccacttcc 10265447
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
|||||||||| |||||| || || |||||||||| |||||||||| ||| ||||||||
Sbjct: 10265336 cttctttcagtagcatcttcactttcatatctcattttgaacctcagcccaacagaaaat 10265277
Query: 1560 ggttgactgaagctcttgataaacttc 1586
||||| |||| ||| || || ||||||
Sbjct: 10265276 ggttggctgaggcttttcatgaacttc 10265250
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 10267114 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 10267055
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 10267054 ccatgaaaagca 10267043
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 7791831 aattcttgaccttgcaagaccctgtggaa 7791803
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 299 bits (151), Expect = 3e-078
Identities = 277/319 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 27567265 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 27567206
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 27567205 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 27567146
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 27567145 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 27567086
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 27567085 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 27567026
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 27567025 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 27566966
Query: 1236 gattccgcaaaatcaggac 1254
|||||||||||||||||||
Sbjct: 27566965 gattccgcaaaatcaggac 27566947
Score = 174 bits (88), Expect = 1e-040
Identities = 145/164 (88%)
Strand = Plus / Minus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacattaggt 1679
||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||| |
Sbjct: 27565106 ctgggattgtagtatatgttgaacacactttctgtagccactgcatgtgcaacattggca 27565047
Query: 1680 agtgaaccaagatttgagcactggttataaagagctggaaaagcagatccatttttaagc 1739
|||| ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 27565046 agtgtaccaagattagaacactggttgtaaagtgctggaaaagcagacccatttttaagc 27564987
Query: 1740 tgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
|||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 27564986 tgagctgcacggcgaactcccagtcttagctccccatcatcacc 27564943
Score = 129 bits (65), Expect = 6e-027
Identities = 131/153 (85%)
Strand = Plus / Minus
Query: 1268 tggaactaggtagtctggattaacatggggaagacatggtttcagtctctttgcatttgg 1327
|||||| | ||| ||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 27566850 tggaaccatgtattctggattaacatggggaagacatggtttcaatcgctttgaatgggg 27566791
Query: 1328 tgcagacatgtgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcct 1387
|| |||| || |||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 27566790 tgtggacaaatgggatcctgacactgaactagtcagctcaatctcccaaggagagaccct 27566731
Query: 1388 gtttggttgacgaaaatctacatcgtcatccca 1420
||||||| |||| || || | |||||||||||
Sbjct: 27566730 gtttggtcgacggaactcagcgtcgtcatccca 27566698
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 27567939 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 27567880
Query: 394 catgaac 400
|||||||
Sbjct: 27567879 catgaac 27567873
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 27567714 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 27567669
Score = 63.9 bits (32), Expect = 3e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1425 accatcaaacatttccatttcgaaccacgccacatggggtcagcatcaccaattcc 1480
|||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||
Sbjct: 27565815 accaacaaacatttccatttcgaaccatgccacatagggtctgtatcaccacttcc 27565760
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
|||||||||| |||||| || || |||||||||| |||||||||| ||| ||||||||
Sbjct: 27565649 cttctttcagtagcatcttcactttcatatctcattttgaacctcagcccaacagaaaat 27565590
Query: 1560 ggttgactgaagctcttgataaacttc 1586
||||| |||| ||| || || ||||||
Sbjct: 27565589 ggttggctgaggcttttcatgaacttc 27565563
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 27567427 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 27567368
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 27567367 ccatgaaaagca 27567356
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 25092144 aattcttgaccttgcaagaccctgtggaa 25092116
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 299 bits (151), Expect = 3e-078
Identities = 277/319 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 27818298 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 27818239
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 27818238 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 27818179
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 27818178 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 27818119
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 27818118 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 27818059
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 27818058 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttgtggaattgggca 27817999
Query: 1236 gattccgcaaaatcaggac 1254
|||||||||||||||||||
Sbjct: 27817998 gattccgcaaaatcaggac 27817980
Score = 174 bits (88), Expect = 1e-040
Identities = 145/164 (88%)
Strand = Plus / Minus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaacattaggt 1679
||||| |||||||| |||| ||||||||||| || ||||| |||||||||||||| |
Sbjct: 27816139 ctgggattgtagtatatgttgaacacactttctgtagccactgcatgtgcaacattggca 27816080
Query: 1680 agtgaaccaagatttgagcactggttataaagagctggaaaagcagatccatttttaagc 1739
|||| ||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 27816079 agtgtaccaagattagaacactggttgtaaagtgctggaaaagcagacccatttttaagc 27816020
Query: 1740 tgagctgcacggcgcactccaagtcttagctccccattatcacc 1783
|||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct: 27816019 tgagctgcacggcgaactcccagtcttagctccccatcatcacc 27815976
Score = 129 bits (65), Expect = 6e-027
Identities = 131/153 (85%)
Strand = Plus / Minus
Query: 1268 tggaactaggtagtctggattaacatggggaagacatggtttcagtctctttgcatttgg 1327
|||||| | ||| ||||||||||||||||||||||||||||||| || ||||| || ||
Sbjct: 27817883 tggaaccatgtattctggattaacatggggaagacatggtttcaatcgctttgaatgggg 27817824
Query: 1328 tgcagacatgtgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcct 1387
|| |||| || |||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct: 27817823 tgtggacaaatgggatcctgacactgaactagtcagctcaatctcccaaggagagaccct 27817764
Query: 1388 gtttggttgacgaaaatctacatcgtcatccca 1420
||||||| |||| || || | |||||||||||
Sbjct: 27817763 gtttggtcgacggaactcagcgtcgtcatccca 27817731
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 27818972 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 27818913
Query: 394 catgaac 400
|||||||
Sbjct: 27818912 catgaac 27818906
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 27818747 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 27818702
Score = 63.9 bits (32), Expect = 3e-007
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1425 accatcaaacatttccatttcgaaccacgccacatggggtcagcatcaccaattcc 1480
|||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||
Sbjct: 27816848 accaacaaacatttccatttcgaaccatgccacatagggtctgtatcaccacttcc 27816793
Score = 61.9 bits (31), Expect = 1e-006
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
|||||||||| |||||| || || |||||||||| |||||||||| ||| ||||||||
Sbjct: 27816682 cttctttcagtagcatcttcactttcatatctcattttgaacctcagcccaacagaaaat 27816623
Query: 1560 ggttgactgaagctcttgataaacttc 1586
||||| |||| ||| || || ||||||
Sbjct: 27816622 ggttggctgaggcttttcatgaacttc 27816596
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 27818460 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 27818401
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 27818400 ccatgaaaagca 27818389
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 25360250 aattcttgaccttgcaagaccctgtggaa 25360222
>gb|CF309353.1|CF309353 ABF--03-I07.b1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group) cDNA
clone ABF--03-I07, mRNA sequence
Length = 609
Score = 248 bits (125), Expect = 9e-063
Identities = 258/301 (85%), Gaps = 1/301 (0%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 301 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 242
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 241 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 182
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 181 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 122
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 121 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 62
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggca 1235
|||||| | || |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 61 ccaccatgagatttaaaacccaataattcttgaccttgcaagacc-tgtggaattgggca 3
Query: 1236 g 1236
|
Sbjct: 2 g 2
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 464 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 405
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 404 ccatgaaaagca 393
>gb|CF304049.1|CF304049 ABF1--03-O22.g1 ABF3-overexpressing transgenic rice lambda phage cDNA
library (ABF1) Oryza sativa (japonica cultivar-group)
cDNA clone ABF1--03-O22, mRNA sequence
Length = 611
Score = 244 bits (123), Expect = 1e-061
Identities = 256/299 (85%), Gaps = 1/299 (0%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 305 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 246
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 245 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 186
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 185 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 126
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcagca 1175
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| |||||| |
Sbjct: 125 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcagta 66
Query: 1176 ttgtcatgagttctataacccagtaattcttgaccttgcaagaccttgtggaattgggc 1234
|||||| | || |||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 65 ccaccatgagatttaaaacccaataattcttgaccttgcaagaccttg-ggaattgggc 8
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 467 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 408
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 407 ccatgaaaagca 396
>gb|CF323603.1|CF323603 HDN--04-E15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--04-E15, mRNA sequence
Length = 576
Score = 210 bits (106), Expect = 2e-051
Identities = 205/238 (86%)
Strand = Plus / Minus
Query: 936 gcatcgaccagagttcctctgtagggatgaaatacttcttgaccttgcaagaccttttgg 995
||||| |||| |||||||| ||||||| |||||| |||||||||||||||||||||||||
Sbjct: 267 gcatcaaccaaagttcctcggtagggacgaaataattcttgaccttgcaagaccttttgg 208
Query: 996 aatcttggagactccccaaagcctgagcaacggtaggaaaacctagggcttccgagtggt 1055
| ||| ||||||||||||||||||||||| |||||||||| | ||| |||| ||||||
Sbjct: 207 agtctgtgagactccccaaagcctgagcaatggtaggaaaatcctgggtttccaagtggt 148
Query: 1056 gttctgacaccaattcttggaacccccgggataatgttactcgcatcgttggagcaactt 1115
| ||| |||||| |||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 147 gctctatcaccaagtcttggaacccctaggatactgttactcgcatcgctggagcaactc 88
Query: 1116 cgttcatcaatgtactgcatgttcgttgcttcgcatggctgagaagttgcaacagcag 1173
|| ||||| |||||||| | | | ||||||| |||||||||||||| ||| ||||||
Sbjct: 87 cgctcatcgatgtactgtaaatgccttgcttcacatggctgagaagtagcagcagcag 30
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 430 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 371
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 370 ccatgaaaagca 359
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1199 taattcttgaccttgcaagaccttgtgga 1227
|||||||||||||||||||||||| ||||
Sbjct: 235 taattcttgaccttgcaagaccttttgga 207
>gb|CF305577.1|CF305577 HDA1--01-B17.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--01-B17, mRNA sequence
Length = 597
Score = 137 bits (69), Expect = 2e-029
Identities = 147/173 (84%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 415 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 356
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaat 1619
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 355 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaac 296
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 295 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 243
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 224 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 165
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 164 gcgcactcc 156
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 579 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 536
>ref|NM_191956.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2190
Score = 137 bits (69), Expect = 2e-029
Identities = 147/173 (84%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 989 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 930
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaat 1619
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 929 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaac 870
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 869 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 817
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Minus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 1539 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 1480
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 1479 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 1420
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 1419 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 1360
Query: 1130 ctg 1132
|||
Sbjct: 1359 ctg 1357
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1289 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 1240
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcctgtttggttga 1397
||||||||||||||||| | | | |||||||||||||||||||| | || || || ||
Sbjct: 1151 tgagatcctgaaactgatccactaagctcaatctcccaaggagataccccattaggccga 1092
Query: 1398 cgaaaatctacatcgtcatcccatcggaccatcaaacatttccatttcgaaccacgccac 1457
|| | || ||||| ||||||||| |||| ||||||||||| ||||||||| |||||
Sbjct: 1091 cggcactccacatcatcatcccatttcaccactaaacatttccacttcgaaccatgccac 1032
Query: 1458 at 1459
||
Sbjct: 1031 at 1030
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 1287 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 1243
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 798 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 739
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 738 gcgcactcc 730
>gb|CF329170.1|CF329170 NACL--04-G09.b1 Rice callus plasmid cDNA library (NACL) Oryza sativa
(japonica cultivar-group) cDNA clone NACL--04-G09, mRNA
sequence
Length = 575
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Minus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 189 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 130
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 129 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 70
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 69 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 10
Query: 1130 ctg 1132
|||
Sbjct: 9 ctg 7
>dbj|AK103776.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033143P19, full
insert sequence
Length = 2338
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Minus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 1280 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 1221
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 1220 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 1161
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 1160 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 1101
Query: 1130 ctg 1132
|||
Sbjct: 1100 ctg 1098
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 730 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 671
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 670 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 612
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1030 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 981
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcctgtttggttga 1397
||||||||||||||||| | | | |||||||||||||||||||| | || || || ||
Sbjct: 892 tgagatcctgaaactgatccactaagctcaatctcccaaggagataccccattaggccga 833
Query: 1398 cgaaaatctacatcgtcatcccatcggaccatcaaacatttccatttcgaaccacgccac 1457
|| | || ||||| ||||||||| |||| ||||||||||| ||||||||| |||||
Sbjct: 832 cggcactccacatcatcatcccatttcaccactaaacatttccacttcgaaccatgccac 773
Query: 1458 at 1459
||
Sbjct: 772 at 771
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 1028 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 984
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 527 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 468
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 467 gcgcactcc 459
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
||||||||||| ||| ||||| ||||| |||| ||||| ||||||||||||| || |
Sbjct: 1899 atcagatcatcgtattcactgctgaaatatcaacgaccctgccaacaacaggcctttgtt 1840
Query: 394 catgaacggtggcacagctgttgccca 420
|||| || |||||||| ||| ||||||
Sbjct: 1839 catggaccgtggcacaactgctgccca 1813
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 598 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 546
>gb|AACV01002084.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002084, whole
genome shotgun sequence
Length = 34865
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Plus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 26076 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 26135
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 26136 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 26195
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 26196 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 26255
Query: 1130 ctg 1132
|||
Sbjct: 26256 ctg 26258
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 27438 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 27497
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 27498 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 27556
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 26326 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 26375
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 28652 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 28711
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 28712 gcgcactcc 28720
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 26328 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 26372
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 26550 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 26593
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 28581 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 28633
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Plus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 27576619 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 27576678
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 27576679 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 27576738
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 27576739 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 27576798
Query: 1130 ctg 1132
|||
Sbjct: 27576799 ctg 27576801
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 27577981 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 27578040
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 27578041 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 27578099
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 27576869 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 27576918
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 27579195 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 27579254
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 27579255 gcgcactcc 27579263
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 27576871 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 27576915
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 27577093 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 27577136
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 27579124 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 27579176
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Plus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 2024002 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 2024061
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 2024062 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 2024121
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 2024122 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 2024181
Query: 1130 ctg 1132
|||
Sbjct: 2024182 ctg 2024184
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 2025364 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 2025423
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 2025424 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 2025482
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 2024252 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 2024301
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 2026578 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 2026637
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 2026638 gcgcactcc 2026646
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 2024254 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 2024298
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 2024476 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 2024519
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 2026507 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 2026559
>dbj|AP003706.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1125_C04
Length = 98476
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Plus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 16652 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 16711
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 16712 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 16771
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 16772 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 16831
Query: 1130 ctg 1132
|||
Sbjct: 16832 ctg 16834
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 18014 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 18073
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 18074 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 18132
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 16902 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 16951
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 19228 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 19287
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 19288 gcgcactcc 19296
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 16904 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 16948
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 17126 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 17169
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 19157 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 19209
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Plus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 1964984 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 1965043
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 1965044 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 1965103
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 1965104 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 1965163
Query: 1130 ctg 1132
|||
Sbjct: 1965164 ctg 1965166
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 1966346 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 1966405
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 1966406 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 1966464
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 1965234 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 1965283
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 1967560 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 1967619
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 1967620 gcgcactcc 1967628
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 1965236 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 1965280
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1965458 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 1965501
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 1967489 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 1967541
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Plus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 27166705 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 27166764
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 27166765 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 27166824
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 27166825 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 27166884
Query: 1130 ctg 1132
|||
Sbjct: 27166885 ctg 27166887
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 27168067 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 27168126
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 27168127 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 27168185
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 27166955 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 27167004
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 27169281 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 27169340
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 27169341 gcgcactcc 27169349
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 27166957 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 27167001
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 27167179 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 27167222
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 27169210 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 27169262
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 125 bits (63), Expect = 9e-026
Identities = 153/183 (83%)
Strand = Plus / Plus
Query: 950 tcctctgtagggatgaaatacttcttgaccttgcaagaccttttggaatcttggagactc 1009
||||| ||| ||| |||| |||||||||||||||||||||| |||||||||| |||| ||
Sbjct: 27495949 tcctcggtaaggacgaaacacttcttgaccttgcaagacctcttggaatctttgagattc 27496008
Query: 1010 cccaaagcctgagcaacggtaggaaaacctagggcttccgagtggtgttctgacaccaat 1069
|||||||||||||||| |||||||||||| |||| |||| ||| ||| | || ||||
Sbjct: 27496009 cccaaagcctgagcaatggtaggaaaacccagggtttccacttggagttttcaccccaag 27496068
Query: 1070 tcttggaacccccgggataatgttactcgcatcgttggagcaacttcgttcatcaatgta 1129
||| |||||||| |||| |||||||| | | | |||||||||||||||||| ||||
Sbjct: 27496069 tctcggaacccctaagatattgttactcatgttgatagagcaacttcgttcatcagtgta 27496128
Query: 1130 ctg 1132
|||
Sbjct: 27496129 ctg 27496131
Score = 93.7 bits (47), Expect = 3e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 27497311 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 27497370
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcagattggcttaa 1618
|||||||||||||| | ||||||||| || ||||||||||||| ||||| || |||||
Sbjct: 27497371 ggttgactgaagcttctcataaacttccaatatggtataatgaactcagactgacttaa 27497429
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 27496199 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 27496248
Score = 58.0 bits (29), Expect = 2e-005
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1691 atttgagcactggttataaagagctggaaaagcagatccatttttaagctgagctgcacg 1750
||||||| |||||||| ||| || ||||||| |||| ||||||| |||||||| || ||
Sbjct: 27498525 atttgagatctggttatgaagtgcaggaaaaggagatgcattttttagctgagcagctcg 27498584
Query: 1751 gcgcactcc 1759
|||||||||
Sbjct: 27498585 gcgcactcc 27498593
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 27496201 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 27496245
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 27496423 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 27496466
Score = 50.1 bits (25), Expect = 0.004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1620 ctggggttgtagtagatgtggaacacacttttggtggccacagcatgtgcaac 1672
||||| |||||||||||||| || | |||||| ||||||||||||||||||
Sbjct: 27498454 ctgggattgtagtagatgtgaaaaatacttttcacggccacagcatgtgcaac 27498506
>gb|C73003.1|C73003 C73003 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E2658_1A, mRNA sequence
Length = 463
Score = 121 bits (61), Expect = 1e-024
Identities = 142/169 (84%)
Strand = Plus / Minus
Query: 964 gaaatacttcttgaccttgcaagaccttttggaatcttggagactccccaaagcctgagc 1023
|||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||
Sbjct: 454 gaaacacttcttgaccttgcaagacctcttggaatctttgagattccccaaagcctgagc 395
Query: 1024 aacggtaggaaaacctagggcttccgagtggtgttctgacaccaattcttggaacccccg 1083
|| |||||||||||| |||| |||| ||| ||| | || |||| ||| ||||||||
Sbjct: 394 aatggtaggaaaacccagggtttccacttggagttttcaccccaagtctcggaaccccta 335
Query: 1084 ggataatgttactcgcatcgttggagcaacttcgttcatcaatgtactg 1132
|||| |||||||| | | | |||||||||||||||||| |||||||
Sbjct: 334 agatattgttactcatgttgatagagcaacttcgttcatcagtgtactg 286
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 218 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 169
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 216 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 172
Score = 56.0 bits (28), Expect = 7e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggaga 1381
||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 80 tgagatcctgaaactgatccactaagctcaatctcccaaggaga 37
>gb|AU069424.1|AU069424 AU069424 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C61470_8A, mRNA sequence
Length = 521
Score = 117 bits (59), Expect = 2e-023
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 1714 ctggaaaagcagatccatttttaagctgagctgcacggcgcactccaagtcttagctccc 1773
||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 521 ctggaaaagcagacccatttttaagctgagctgcacggcgaactcccagtcttagctccc 462
Query: 1774 cattatcacccctcaaaaatagt 1796
||| |||||| | ||||||||||
Sbjct: 461 catcatcacctcgcaaaaatagt 439
>gb|AU095170.1|AU095170 AU095170 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60442, mRNA sequence
Length = 359
Score = 91.7 bits (46), Expect = 1e-015
Identities = 94/110 (85%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaacctcgaaccagcagaaaat 1559
||||||||||||||||| || ||||||||||||| |||||| | | ||| |||||||
Sbjct: 111 cttctttcagaagcatcctcactctcatatctcaatttgaatcgcattccaacagaaaag 52
Query: 1560 ggttgactgaagctcttgataaacttcgaaaatggtataatgaattcaga 1609
|||||||||||||| | ||||||||| || ||||||||||||| |||||
Sbjct: 51 ggttgactgaagcttctcataaacttccaatatggtataatgaactcaga 2
Score = 60.0 bits (30), Expect = 4e-006
Identities = 99/122 (81%)
Strand = Plus / Minus
Query: 1338 tgagatcctgaaactgaactagtcagctcaatctcccaaggagaaatcctgtttggttga 1397
||||||||||||||||| | | | |||||||||||||||||||| | || || || ||
Sbjct: 273 tgagatcctgaaactgatccactaagctcaatctcccaaggagataccccattaggccga 214
Query: 1398 cgaaaatctacatcgtcatcccatcggaccatcaaacatttccatttcgaaccacgccac 1457
|| | || ||||| ||||||||| |||| ||||||||||| ||||||||| |||||
Sbjct: 213 cggcactccacatcatcatcccatttcaccactaaacatttccacttcgaaccatgccac 154
Query: 1458 at 1459
||
Sbjct: 153 at 152
>gb|AU031684.1|AU031684 AU031684 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0521_6Z, mRNA sequence
Length = 716
Score = 85.7 bits (43), Expect = 8e-014
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| |||||||||| || ||||
Sbjct: 335 atcagatcatcatatccatagttgaaatatcaatcaccctgncaacaacaggnctttgct 276
Query: 394 catgaacggtggcacagctgttgcccag 421
||||||||| ||||| || ||||||||
Sbjct: 275 catgaacggnagcacaactattgcccag 248
Score = 56.0 bits (28), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
||||||| |||||||| |||||||| ||| ||||||||||| ||||
Sbjct: 182 ttgctggnaccttctcagtcaaagagatggcaaatattttgnaact 137
>gb|CF309354.1|CF309354 ABF--03-I07.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--03-I07, mRNA sequence
Length = 597
Score = 77.8 bits (39), Expect = 2e-011
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
|||||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 531 atcagatcatcatatccatagttgaaatatcaatcaccctgccaacaacaggcctttgct 590
Query: 394 catgaac 400
|||||||
Sbjct: 591 catgaac 597
>gb|D23888.1|D23888 RICR0521A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0521_1A, mRNA sequence
Length = 367
Score = 75.8 bits (38), Expect = 7e-011
Identities = 44/46 (95%)
Strand = Plus / Minus
Query: 502 ttgctggaaccttctcggtcaaagatatgccaaatattttgcaact 547
|||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 321 ttgctggaaccttctcagtcaaagagatgccaaatattttgcaact 276
>gb|CF324424.1|CF324424 HDN--06-H24.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-H24, mRNA sequence
Length = 281
Score = 75.8 bits (38), Expect = 7e-011
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaattgggcagattccgcaaaatc 1249
|||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 121 aattcttgaccttgcaagaccttgtggaatctggcagactccgcaaaatc 72
Score = 58.0 bits (29), Expect = 2e-005
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttttggaatcttggagactccccaaa 1015
||||||||||||||||||||| |||||||| | ||||||| ||||
Sbjct: 119 ttcttgaccttgcaagaccttgtggaatctggcagactccgcaaa 75
Score = 44.1 bits (22), Expect = 0.26
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1107 gagcaacttcgttcatcaatgtactg 1132
|||||||||||||||||| |||||||
Sbjct: 214 gagcaacttcgttcatcagtgtactg 189
>gb|AQ256200.1|AQ256200 nbxb0015D24r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0015D24r, DNA sequence
Length = 612
Score = 58.0 bits (29), Expect = 2e-005
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 1500 cttctttcagaagcatcatcgctctcatatctcactttgaa 1540
||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 69 cttctttcagaagcatcctcactctcatatctcaatttgaa 29
>gb|CA999254.1|CA999254 S234P_D04 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 217
Score = 56.0 bits (28), Expect = 7e-005
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 777 tgaaacatcaggacagatggtggggatgaggattgagatggaacagctggtgcttgttgg 836
|||||||| ||||||||||| || ||||| ||||||||||||| ||| ||||| || |
Sbjct: 175 tgaaacattaggacagatggcggagatgatgattgagatggaagagccagtgctggtggt 116
Query: 837 ccacgaaaagca 848
||| ||||||||
Sbjct: 115 ccatgaaaagca 104
>gb|CB674923.1|CB674923 OSJNEe10E09.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe10E09 3', mRNA sequence
Length = 734
Score = 54.0 bits (27), Expect = 3e-004
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 334 atcagatcatcatatccactgttgaaacgtcaatcaccctagcaacaacaggcctctgct 393
||||||||||| ||| ||||| ||||| |||| ||||| ||||||||||||| || |
Sbjct: 427 atcagatcatcgtattcactgctgaaatatcaacgaccctgccaacaacaggcctttgtt 486
Query: 394 catgaacggtggcacagctgttgccca 420
|||| || |||||||| ||| ||||||
Sbjct: 487 catggaccgtggcacaactgctgccca 513
>dbj|AK058446.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-G06, full
insert sequence
Length = 1408
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 388 aattcttgaccttgcaagaccctgtggaa 360
>dbj|AK067927.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127F13, full
insert sequence
Length = 2616
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 1387 aattcttgaccttgcaagaccctgtggaa 1359
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10,
complete sequence
Length = 143073
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 611 aattcttgaccttgcaagaccctgtggaa 583
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06,
complete sequence
Length = 142068
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 94854 aattcttgaccttgcaagaccctgtggaa 94826
>gb|AACV01012559.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012559, whole
genome shotgun sequence
Length = 17440
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 3805 aattcttgaccttgcaagaccctgtggaa 3777
>ref|NT_107217.1| Oryza sativa (japonica cultivar-group)
Length = 898765
Score = 50.1 bits (25), Expect = 0.004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1200 aattcttgaccttgcaagaccttgtggaa 1228
||||||||||||||||||||| |||||||
Sbjct: 429103 aattcttgaccttgcaagaccctgtggaa 429075
>gb|C27876.1|C27876 C27876 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53305_1A, mRNA sequence
Length = 467
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 398 cttcttgaccttgcaagacctttt 421
>gb|AU100890.1|AU100890 AU100890 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C53305, mRNA sequence
Length = 633
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 397 cttcttgaccttgcaagacctttt 420
>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0085H08, from chromosome 3, complete sequence
Length = 126708
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 31605 cttcttgaccttgcaagacctttt 31582
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAb0085H08, from chromosome 3, complete sequence
Length = 130656
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 28396 cttcttgaccttgcaagacctttt 28419
>gb|AACV01006475.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006475, whole
genome shotgun sequence
Length = 12246
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 2002 cttcttgaccttgcaagacctttt 2025
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 2591703 cttcttgaccttgcaagacctttt 2591726
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 11327873 cttcttgaccttgcaagacctttt 11327896
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 11520235 cttcttgaccttgcaagacctttt 11520258
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 11246206 cttcttgaccttgcaagacctttt 11246229
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 48.1 bits (24), Expect = 0.017
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 970 cttcttgaccttgcaagacctttt 993
||||||||||||||||||||||||
Sbjct: 11249443 cttcttgaccttgcaagacctttt 11249466
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,347,591
Number of Sequences: 438736
Number of extensions: 2347591
Number of successful extensions: 11679
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11100
Number of HSP's gapped (non-prelim): 513
length of query: 1796
length of database: 2,800,419,916
effective HSP length: 22
effective length of query: 1774
effective length of database: 2,790,767,724
effective search space: 4950821942376
effective search space used: 4950821942376
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)