BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441110.2.1
(643 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU068893.1|AU068893 AU068893 Rice callus Oryza sativa (j... 373 e-101
gb|AU078087.1|AU078087 AU078087 Rice callus Oryza sativa (j... 373 e-101
gb|CB663227.1|CB663227 OSJNEd07P02.f OSJNEd Oryza sativa (j... 373 e-101
dbj|AK103351.1| Oryza sativa (japonica cultivar-group) cDNA... 373 e-101
dbj|AK112012.1| Oryza sativa (japonica cultivar-group) cDNA... 373 e-101
ref|NM_183916.1| Oryza sativa (japonica cultivar-group), p... 373 e-101
gb|AU075973.1|AU075973 AU075973 Rice callus Oryza sativa (j... 359 1e-096
gb|CF279142.1|CF279142 14ETL--05-F10.g1 Rice etiolated leaf... 353 7e-095
gb|CF329365.1|CF329365 NACL--04-K16.g1 Rice callus plasmid ... 343 7e-092
dbj|AP003793.1| Oryza sativa (japonica cultivar-group) geno... 339 1e-090
dbj|AP003331.3| Oryza sativa (japonica cultivar-group) geno... 339 1e-090
gb|AACV01000976.1| Oryza sativa (japonica cultivar-group) c... 339 1e-090
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 339 1e-090
ref|NT_079961.2| Oryza sativa (japonica cultivar-group) 339 1e-090
gb|CH401165.1| Oryza sativa (japonica cultivar-group) chrom... 339 1e-090
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 339 1e-090
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 339 1e-090
gb|CF316271.1|CF316271 HD--05-I01.g1 OsHDAC1-overexpressing... 337 4e-090
gb|CF315926.1|CF315926 HD--05-A10.g1 OsHDAC1-overexpressing... 311 3e-082
gb|CX728502.1|CX728502 OSJNEf08A08.r OSJNEf Oryza sativa (j... 293 6e-077
gb|CF276242.1|CF276242 14ETL--01-F03.g1 Rice etiolated leaf... 230 7e-058
gb|CF315925.1|CF315925 HD--05-A10.b1 OsHDAC1-overexpressing... 190 6e-046
gb|CV723443.1|CV723443 root--03-J11.g1 Rice root lambda pha... 133 1e-028
gb|CV730728.1|CV730728 FLO--04-G18.g1 Rice flower lambda ph... 117 8e-024
dbj|AK111904.1| Oryza sativa (japonica cultivar-group) cDNA... 111 5e-022
dbj|AK111979.1| Oryza sativa (japonica cultivar-group) cDNA... 111 5e-022
dbj|AK119548.1| Oryza sativa (japonica cultivar-group) cDNA... 111 5e-022
gb|AY620417.1| Oryza sativa (japonica cultivar-group) clone... 111 5e-022
ref|NM_187884.1| Oryza sativa (japonica cultivar-group), Oz... 111 5e-022
gb|CV723416.1|CV723416 root--03-I02.g1 Rice root lambda pha... 105 3e-020
dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA... 105 3e-020
dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA... 105 3e-020
emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC O... 105 3e-020
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 105 3e-020
gb|AACV01025261.1| Oryza sativa (japonica cultivar-group) c... 105 3e-020
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 105 3e-020
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 105 3e-020
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 105 3e-020
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 105 3e-020
gb|CF334530.1|CF334530 JMT--03-N19.b1 AtJMT-overexpressing ... 101 5e-019
gb|CF322156.1|CF322156 HD--13-K14.g1 OsHDAC1-overexpressing... 100 2e-018
gb|CV730316.1|CV730316 FLO--03-M20.g1 Rice flower lambda ph... 100 2e-018
gb|CV730969.1|CV730969 FLO--04-M12.g1 Rice flower lambda ph... 100 2e-018
gb|AACV01000591.1| Oryza sativa (japonica cultivar-group) c... 100 2e-018
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 100 2e-018
dbj|AP000492.1| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA... 98 7e-018
gb|AU225884.1|AU225884 AU225884 Oryza sativa Koshihikari pi... 94 1e-016
gb|CF279141.1|CF279141 14ETL--05-F10.b1 Rice etiolated leaf... 94 1e-016
gb|CF313218.1|CF313218 HD--01-E09.g1 OsHDAC1-overexpressing... 92 4e-016
gb|CF317945.1|CF317945 HD--07-N05.g1 OsHDAC1-overexpressing... 92 4e-016
gb|CF332964.1|CF332964 JMT--01-K18.g1 AtJMT-overexpressing ... 90 2e-015
gb|CF316519.1|CF316519 HD--05-N10.g1 OsHDAC1-overexpressing... 88 7e-015
gb|CF316571.1|CF316571 HD--05-O13.g1 OsHDAC1-overexpressing... 86 3e-014
gb|CF329364.1|CF329364 NACL--04-K16.b1 Rice callus plasmid ... 86 3e-014
gb|CF310637.1|CF310637 ABF--05-G09.g1 ABF3-overexpressing t... 84 1e-013
gb|CF292974.1|CF292974 30DGS--01-P20.b1 Rice leaf plasmid c... 80 2e-012
gb|CF315293.1|CF315293 HD--04-C14.g1 OsHDAC1-overexpressing... 80 2e-012
gb|CV726986.1|CV726986 14Salt--04-O16.b1 Salt treated rice ... 80 2e-012
gb|CF310636.1|CF310636 ABF--05-G09.b1 ABF3-overexpressing t... 78 7e-012
gb|CF297487.1|CF297487 30DGS--08-G04.g1 Rice leaf plasmid c... 76 3e-011
gb|CF297565.1|CF297565 30DGS--08-I03.g1 Rice leaf plasmid c... 76 3e-011
gb|AU078142.1|AU078142 AU078142 Rice cDNA from immature lea... 70 2e-009
gb|CF327537.1|CF327537 NACL--02-B02.g1 Rice callus plasmid ... 64 1e-007
gb|CF276832.1|CF276832 14ETL--02-C07.g1 Rice etiolated leaf... 62 4e-007
gb|CF278938.1|CF278938 14ETL--05-A24.b1 Rice etiolated leaf... 62 4e-007
gb|AY620416.1| Oryza sativa (japonica cultivar-group) clone... 62 4e-007
gb|AQ156850.1|AQ156850 nbxb0008F05r CUGI Rice BAC Library O... 60 2e-006
gb|CF316570.1|CF316570 HD--05-O13.b1 OsHDAC1-overexpressing... 60 2e-006
dbj|AP003513.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
dbj|AP005545.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|AACV01013340.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 60 2e-006
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 60 2e-006
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-006
gb|CF311520.1|CF311520 ABF--06-M07.b1 ABF3-overexpressing t... 58 6e-006
gb|C72293.1|C72293 C72293 Rice panicle at flowering stage O... 56 2e-005
gb|CF313217.1|CF313217 HD--01-E09.b1 OsHDAC1-overexpressing... 56 2e-005
gb|CF322155.1|CF322155 HD--13-K14.b1 OsHDAC1-overexpressing... 56 2e-005
gb|CF337401.1|CF337401 JMT--07-N05.b1 AtJMT-overexpressing ... 56 2e-005
gb|CV724787.1|CV724787 14Salt--01-I23.b1 Salt treated rice ... 56 2e-005
gb|CV725256.1|CV725256 14Salt--02-E03.g1 Salt treated rice ... 56 2e-005
gb|CV726242.1|CV726242 14Salt--03-M11.b1 Salt treated rice ... 56 2e-005
gb|CV727779.1|CV727779 14Salt--06-B16.b1 Salt treated rice ... 56 2e-005
gb|CV731157.1|CV731157 FLO--05-A23.b1 Rice flower lambda ph... 56 2e-005
gb|CV731872.1|CV731872 FLO--06-B16.b1 Rice flower lambda ph... 56 2e-005
gb|CV730315.1|CV730315 FLO--03-M20.b1 Rice flower lambda ph... 52 4e-004
gb|CF296457.1|CF296457 30DGS--06-N06.g1 Rice leaf plasmid c... 50 0.001
gb|CF316518.1|CF316518 HD--05-N10.b1 OsHDAC1-overexpressing... 50 0.001
gb|CL300183.1|CL300183 INJA1_003_NIPP INJASNP_NIPP Oryza sa... 48 0.006
gb|AU161132.1|AU161132 AU161132 Rice callus Oryza sativa (j... 48 0.006
gb|AU161139.1|AU161139 AU161139 Rice callus Oryza sativa (j... 48 0.006
gb|CF334531.1|CF334531 JMT--03-N19.g1 AtJMT-overexpressing ... 48 0.006
gb|AQ870911.1|AQ870911 nbeb0041O08f CUGI Rice BAC Library (... 42 0.36
gb|CV729713.1|CV729713 FLO--02-N19.b1 Rice flower lambda ph... 42 0.36
>gb|AU068893.1|AU068893 AU068893 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C50857_12Z, mRNA sequence
Length = 727
Score = 373 bits (188), Expect = e-101
Identities = 308/348 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 433 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 374
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 373 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 314
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 313 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 254
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 253 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 194
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 193 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 134
Query: 596 caggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 133 caaatataccacagcatcaaccttggcgtagtagtccttccagacgcg 86
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 671 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 632
>gb|AU078087.1|AU078087 AU078087 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52334_10Z, mRNA sequence
Length = 695
Score = 373 bits (188), Expect = e-101
Identities = 308/348 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 404 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 345
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 344 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 285
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 284 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 225
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 224 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 165
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 164 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 105
Query: 596 caggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 104 caaatataccacagcatcaaccttggcgtagtagtccttccagacgcg 57
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 642 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 603
>gb|CB663227.1|CB663227 OSJNEd07P02.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07P02 5', mRNA sequence
Length = 831
Score = 373 bits (188), Expect = e-101
Identities = 308/348 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 733 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 674
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 673 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 614
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 613 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 554
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 553 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 494
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 493 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 434
Query: 596 caggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 433 caaatataccacagcatcaaccttggcgtagtagtccttccagacgcg 386
>dbj|AK103351.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126I16, full
insert sequence
Length = 1152
Score = 373 bits (188), Expect = e-101
Identities = 308/348 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 936 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 877
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 876 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 817
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 816 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 757
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 756 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 697
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 696 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 637
Query: 596 caggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 636 caaatataccacagcatcaaccttggcgtagtagtccttccagacgcg 589
>dbj|AK112012.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H07, full
insert sequence
Length = 1094
Score = 373 bits (188), Expect = e-101
Identities = 308/348 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 795 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 736
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 735 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 676
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 675 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 616
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 615 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 556
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 555 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 496
Query: 596 caggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 495 caaatataccacagcatcaaccttggcgtagtagtccttccagacgcg 448
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 1033 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 994
>ref|NM_183916.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 582
Score = 373 bits (188), Expect = e-101
Identities = 308/348 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 582 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 523
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 522 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 463
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 462 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 403
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 402 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 343
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 342 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 283
Query: 596 caggtatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| ||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct: 282 caaatataccacagcatcaaccttggcgtagtagtccttccagacgcg 235
>gb|AU075973.1|AU075973 AU075973 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10015_12Z, mRNA sequence
Length = 695
Score = 359 bits (181), Expect = 1e-096
Identities = 308/349 (88%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 406 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 347
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 346 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 287
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 286 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 227
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 226 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 167
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 166 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 107
Query: 596 caggtatactacagcatcaacctttgcgtagtaatcc-ttccagacgcg 643
|| ||||| |||||||||||||| |||||||| ||| |||||||||||
Sbjct: 106 caaatataccacagcatcaaccttggcgtagtagtcctttccagacgcg 58
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 644 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 605
>gb|CF279142.1|CF279142 14ETL--05-F10.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-F10, mRNA sequence
Length = 691
Score = 353 bits (178), Expect = 7e-095
Identities = 298/338 (88%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 354 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 413
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 414 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 473
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 474 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 533
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 534 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 593
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 594 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 653
Query: 596 caggtatactacagcatcaacctttgcgtagtaatcct 633
|| ||||| |||||||||||||| |||||||| ||||
Sbjct: 654 caaatataccacagcatcaaccttggcgtagtagtcct 691
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 117 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 156
>gb|CF329365.1|CF329365 NACL--04-K16.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--04-K16, mRNA sequence
Length = 633
Score = 343 bits (173), Expect = 7e-092
Identities = 290/329 (88%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 305 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 364
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 365 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 424
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 425 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 484
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 485 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 544
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 545 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 604
Query: 596 caggtatactacagcatcaacctttgcgt 624
|| ||||| |||||||||||||| ||||
Sbjct: 605 caaatataccacagcatcaaccttggcgt 633
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 67 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 106
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0487E11
Length = 151303
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 143325 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 143266
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 143265 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 143206
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 143205 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 143146
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 143145 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 143086
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 143085 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 143026
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 143025 caaatataccacagcatcaacct 143003
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 143563 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 143524
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 142031 accttggcgtagtagtccttccagacgcg 142003
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1088D01
Length = 146144
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 11382 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 11323
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 11322 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 11263
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 11262 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 11203
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 11202 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 11143
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 11142 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 11083
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 11082 caaatataccacagcatcaacct 11060
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 11620 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 11581
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 10088 accttggcgtagtagtccttccagacgcg 10060
>gb|AACV01000976.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000976, whole
genome shotgun sequence
Length = 94026
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 15160 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 15101
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 15100 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 15041
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 15040 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 14981
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 14980 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 14921
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 14920 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 14861
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 14860 caaatataccacagcatcaacct 14838
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 15398 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 15359
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 13866 accttggcgtagtagtccttccagacgcg 13838
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 13268806 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 13268747
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 13268746 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 13268687
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 13268686 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 13268627
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 13268626 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 13268567
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 13268566 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 13268507
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 13268506 caaatataccacagcatcaacct 13268484
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 8411055 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 8411114
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 8411115 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 8411174
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 8411175 gtggtgaagttgct 8411188
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 13269044 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 13269005
Score = 44.1 bits (22), Expect = 0.092
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||| |||||||| ||||||||||||||
Sbjct: 8415251 aaccttggcgtagtagtccttccagacgcg 8415280
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 13267512 accttggcgtagtagtccttccagacgcg 13267484
>ref|NT_079961.2| Oryza sativa (japonica cultivar-group)
Length = 3480660
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 1778031 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 1777972
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 1777971 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 1777912
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1777911 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 1777852
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 1777851 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 1777792
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 1777791 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 1777732
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 1777731 caaatataccacagcatcaacct 1777709
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 1778269 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 1778230
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 1776737 accttggcgtagtagtccttccagacgcg 1776709
>gb|CH401165.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000002 genomic
scaffold, whole genome shotgun sequence
Length = 5008528
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 1530038 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 1529979
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 1529978 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 1529919
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 1529918 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 1529859
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 1529858 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 1529799
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 1529798 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 1529739
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 1529738 caaatataccacagcatcaacct 1529716
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 1530276 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 1530237
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 1528744 accttggcgtagtagtccttccagacgcg 1528716
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 13146533 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 13146474
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 13146473 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 13146414
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 13146413 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 13146354
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 13146353 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 13146294
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 13146293 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 13146234
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 13146233 caaatataccacagcatcaacct 13146211
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 8464682 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 8464741
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 8464742 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 8464801
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 8464802 gtggtgaagttgct 8464815
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 13146771 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 13146732
Score = 44.1 bits (22), Expect = 0.092
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||| |||||||| ||||||||||||||
Sbjct: 8468878 aaccttggcgtagtagtccttccagacgcg 8468907
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 13145239 accttggcgtagtagtccttccagacgcg 13145211
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 339 bits (171), Expect = 1e-090
Identities = 285/323 (88%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 13271024 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 13270965
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 13270964 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 13270905
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 13270904 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 13270845
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 13270844 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 13270785
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 13270784 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 13270725
Query: 596 caggtatactacagcatcaacct 618
|| ||||| |||||||||||||
Sbjct: 13270724 caaatataccacagcatcaacct 13270702
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 8413273 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 8413332
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 8413333 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 8413392
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 8413393 gtggtgaagttgct 8413406
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 13271262 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 13271223
Score = 44.1 bits (22), Expect = 0.092
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||| |||||||| ||||||||||||||
Sbjct: 8417469 aaccttggcgtagtagtccttccagacgcg 8417498
Score = 42.1 bits (21), Expect = 0.36
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 615 acctttgcgtagtaatccttccagacgcg 643
||||| |||||||| ||||||||||||||
Sbjct: 13269730 accttggcgtagtagtccttccagacgcg 13269702
>gb|CF316271.1|CF316271 HD--05-I01.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--05-I01, mRNA sequence
Length = 615
Score = 337 bits (170), Expect = 4e-090
Identities = 289/329 (87%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 287 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 346
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 347 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 406
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 407 cccagttgtgaagttgctaaggcctanatgataccgcagctcctcttcagaagcagcata 466
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 467 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 526
Query: 536 caggagagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctac 595
||||| || || |||||||||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 527 taggagtgcatcaagctccttttttgactcagcaaaacgttccttatcataagcatctac 586
Query: 596 caggtatactacagcatcaacctttgcgt 624
|| ||||| |||||||||||||| ||||
Sbjct: 587 caaatataccacagcatcaaccttggcgt 615
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 49 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 88
>gb|CF315926.1|CF315926 HD--05-A10.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--05-A10, mRNA sequence
Length = 606
Score = 311 bits (157), Expect = 3e-082
Identities = 280/320 (87%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 287 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 346
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 347 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 406
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 407 cccagttgtgaagttgctaaggcctanatgataccgcagctcctcttcagaagcagcata 466
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 467 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 526
Query: 536 caggagagcgtccagctccttttttgattcagc-aaatcgctccttatcatacgcatcta 594
||||| || || |||||||||||||| ||||| ||| || ||||||||||| |||||||
Sbjct: 527 taggagtgcatcaagctccttttttgactcagcaaaaacgttccttatcataagcatcta 586
Query: 595 ccaggtatactacagcatca 614
||| ||||| |||||||||
Sbjct: 587 ccaaatataccacagcatca 606
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 49 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 88
>gb|CX728502.1|CX728502 OSJNEf08A08.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf08A08 3', mRNA sequence
Length = 571
Score = 293 bits (148), Expect = 6e-077
Identities = 244/276 (88%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 290 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 349
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 350 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 409
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 410 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 469
Query: 476 cgggatatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctga 535
|| || |||||||||||||||||||| ||||| || ||| |||||| |||||||| ||
Sbjct: 470 tggaatgtcaatcttgttgccaaggataagaaacgggacagctgccaatgaatcatcaga 529
Query: 536 caggagagcgtccagctccttttttgattcagcaaa 571
||||| || || |||||||||||||| ||||||||
Sbjct: 530 taggagtgcatcaagctccttttttgactcagcaaa 565
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 52 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 91
>gb|CF276242.1|CF276242 14ETL--01-F03.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--01-F03, mRNA sequence
Length = 498
Score = 230 bits (116), Expect = 7e-058
Identities = 176/196 (89%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 303 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 362
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 363 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 422
Query: 416 cccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcata 475
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 423 cccagttgtgaagttgctaaggcctagatgataccgcagctcctcttcagaagcagcata 482
Query: 476 cgggatatcaatcttg 491
|| || |||||||||
Sbjct: 483 tggaatgtcaatcttg 498
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 65 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 104
>gb|CF315925.1|CF315925 HD--05-A10.b1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--05-A10, mRNA sequence
Length = 621
Score = 190 bits (96), Expect = 6e-046
Identities = 168/192 (87%)
Strand = Plus / Minus
Query: 444 tgataccgcagctcctcttcagaggcagcatacgggatatcaatcttgttgccaaggatg 503
||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct: 618 tgataccgcagctcctcttcagaagcagcatatggaatgtcaatcttgttgccaaggata 559
Query: 504 agaaatggaacatttgccaaggaatcatctgacaggagagcgtccagctccttttttgat 563
||||| || ||| |||||| |||||||| || ||||| || || ||||||||||||||
Sbjct: 558 agaaacgggacagctgccaatgaatcatcagataggagtgcatcaagctccttttttgac 499
Query: 564 tcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcg 623
|||||||| || ||||||||||| |||||||||| ||||| |||||||||||||| |||
Sbjct: 498 tcagcaaaacgttccttatcataagcatctaccaaatataccacagcatcaaccttggcg 439
Query: 624 tagtaatccttc 635
||||| ||||||
Sbjct: 438 tagtagtccttc 427
>gb|CV723443.1|CV723443 root--03-J11.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-J11, mRNA sequence
Length = 380
Score = 133 bits (67), Expect = 1e-028
Identities = 109/123 (88%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 256 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 315
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccctt 415
|||||||||||| || || || |||||||||||||| || || ||| |||||||||||||
Sbjct: 316 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccctt 375
Query: 416 ccc 418
|||
Sbjct: 376 ccc 378
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 18 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 57
>gb|CV730728.1|CV730728 FLO--04-G18.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-G18,
mRNA sequence
Length = 422
Score = 117 bits (59), Expect = 8e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||| ||||||||||| || || || |||||||||||||| |||||
Sbjct: 304 ctacttgatgtactgggaaacccacttgaacccgtcaccatagcccatcttgcggacaac 363
Query: 356 actgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccct 414
|||||||||||| || || || |||||||||||||| || || ||| ||||||||||||
Sbjct: 364 actgcacatgaacacttcgaggggccggacattggattcacctaggctgaccttgccct 422
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 66 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 105
>dbj|AK111904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F13, full
insert sequence
Length = 1049
Score = 111 bits (56), Expect = 5e-022
Identities = 272/344 (79%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 692 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 633
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 632 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 573
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || |||| || || || ||||| || || || || || |||
Sbjct: 572 gtggtgaagttgctcagaccaaggtagtagcggagttcctcctccgacgcggcgtatggg 513
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || || || || || || || |||| | |||||| |||| |||
Sbjct: 512 atgtcgatcttgtttcccagtatcaggaaaggcacggttgctagggaatcgtctgcaagg 453
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || || ||||| || || || ||||| || ||||| ||| ||||| |||| |
Sbjct: 452 agggcatcgagttccttcttcgactccgcaaaccgttccttgtcagcggcatccaccaag 393
Query: 600 tatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| || |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 392 taaacaacagcatcgaccttggcgtagtagtccttccagacgcg 349
>dbj|AK111979.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-G03, full
insert sequence
Length = 1035
Score = 111 bits (56), Expect = 5e-022
Identities = 272/344 (79%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 688 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 629
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 628 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 569
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || |||| || || || ||||| || || || || || |||
Sbjct: 568 gtggtgaagttgctcagaccaaggtagtagcggagttcctcctccgacgcggcgtatggg 509
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || || || || || || || |||| | |||||| |||| |||
Sbjct: 508 atgtcgatcttgtttcccagtatcaggaaaggcacggttgctagggaatcgtctgcaagg 449
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || || ||||| || || || ||||| || ||||| ||| ||||| |||| |
Sbjct: 448 agggcatcgagttccttcttcgactccgcaaaccgttccttgtcagcggcatccaccaag 389
Query: 600 tatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| || |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 388 taaacaacagcatcgaccttggcgtagtagtccttccagacgcg 345
>dbj|AK119548.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-C09, full
insert sequence
Length = 1035
Score = 111 bits (56), Expect = 5e-022
Identities = 272/344 (79%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 667 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 608
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 607 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 548
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || |||| || || || ||||| || || || || || |||
Sbjct: 547 gtggtgaagttgctcagaccaaggtagtagcggagttcctcctccgacgcggcgtatggg 488
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || || || || || || || |||| | |||||| |||| |||
Sbjct: 487 atgtcgatcttgtttcccagtatcaggaaaggcacggttgctagggaatcgtctgcaagg 428
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || || ||||| || || || ||||| || ||||| ||| ||||| |||| |
Sbjct: 427 agggcatcgagttccttcttcgactccgcaaaccgttccttgtcagcggcatccaccaag 368
Query: 600 tatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| || |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 367 taaacaacagcatcgaccttggcgtagtagtccttccagacgcg 324
>gb|AY620417.1| Oryza sativa (japonica cultivar-group) clone P0705D01 GTP-binding
protein (GBP) mRNA, complete cds
Length = 1086
Score = 111 bits (56), Expect = 5e-022
Identities = 272/344 (79%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 634 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 575
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 574 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 515
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || |||| || || || ||||| || || || || || |||
Sbjct: 514 gtggtgaagttgctcagaccaaggtagtagcggagttcctcctccgacgcggcgtatggg 455
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || || || || || || || |||| | |||||| |||| |||
Sbjct: 454 atgtcgatcttgtttcccagtatcaggaaaggcacggttgctagggaatcgtctgcaagg 395
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || || ||||| || || || ||||| || ||||| ||| ||||| |||| |
Sbjct: 394 agggcatcgagttccttcttcgactccgcaaaccgttccttgtcagcggcatccaccaag 335
Query: 600 tatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| || |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 334 taaacaacagcatcgaccttggcgtagtagtccttccagacgcg 291
>ref|NM_187884.1| Oryza sativa (japonica cultivar-group), Ozsa8326 predicted mRNA
Length = 582
Score = 111 bits (56), Expect = 5e-022
Identities = 272/344 (79%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 578 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 519
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 518 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 459
Query: 420 gttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagcatacggg 479
|| ||||||||||| || || |||| || || || ||||| || || || || || |||
Sbjct: 458 gtggtgaagttgctcagaccaaggtagtagcggagttcctcctccgacgcggcgtatggg 399
Query: 480 atatcaatcttgttgccaaggatgagaaatggaacatttgccaaggaatcatctgacagg 539
|| || |||||||| || || || || || || || |||| | |||||| |||| |||
Sbjct: 398 atgtcgatcttgtttcccagtatcaggaaaggcacggttgctagggaatcgtctgcaagg 339
Query: 540 agagcgtccagctccttttttgattcagcaaatcgctccttatcatacgcatctaccagg 599
|| || || || ||||| || || || ||||| || ||||| ||| ||||| |||| |
Sbjct: 338 agggcatcgagttccttcttcgactccgcaaaccgttccttgtcagcggcatccaccaag 279
Query: 600 tatactacagcatcaacctttgcgtagtaatccttccagacgcg 643
|| || |||||||| ||||| |||||||| ||||||||||||||
Sbjct: 278 taaacaacagcatcgaccttggcgtagtagtccttccagacgcg 235
>gb|CV723416.1|CV723416 root--03-I02.g1 Rice root lambda phage cDNA library (root) Oryza
sativa (japonica cultivar-group) cDNA clone
root--03-I02, mRNA sequence
Length = 486
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 222 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 281
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 282 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 341
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 342 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 401
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 402 taggggatgtcgatcttgttgcccaggat 430
>dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B07, full
insert sequence
Length = 952
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Minus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 713 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 654
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 653 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 594
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 593 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 534
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 533 taggggatgtcgatcttgttgcccaggat 505
>dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044P12, full
insert sequence
Length = 927
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Minus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 710 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 651
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 650 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 591
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 590 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 531
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 530 taggggatgtcgatcttgttgcccaggat 502
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 155568
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 82950 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 83009
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 83010 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 83069
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 83070 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 83129
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 83130 taggggatgtcgatcttgttgcccaggat 83158
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 1485942 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 1486001
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 1486002 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 1486061
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 1486062 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 1486121
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 1486122 taggggatgtcgatcttgttgcccaggat 1486150
>gb|AACV01025261.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025261, whole
genome shotgun sequence
Length = 6887
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Minus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 2651 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 2592
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 2591 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 2532
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 2531 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 2472
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 2471 taggggatgtcgatcttgttgcccaggat 2443
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 3621150 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 3621209
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 3621210 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 3621269
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 3621270 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 3621329
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 3621330 taggggatgtcgatcttgttgcccaggat 3621358
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 19144255 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 19144314
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 19144315 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 19144374
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 19144375 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 19144434
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 19144435 taggggatgtcgatcttgttgcccaggat 19144463
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 22973673 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 22973732
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 22973733 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 22973792
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 22973793 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 22973852
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 22973853 taggggatgtcgatcttgttgcccaggat 22973881
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 105 bits (53), Expect = 3e-020
Identities = 170/209 (81%)
Strand = Plus / Plus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| || || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 22901864 ccctacttgatgtactgtgacacccacttgaacccatccccatagcccatcttgcggacg 22901923
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 22901924 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 22901983
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 22901984 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 22902043
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 22902044 taggggatgtcgatcttgttgcccaggat 22902072
>gb|CF334530.1|CF334530 JMT--03-N19.b1 AtJMT-overexpressing transgenic rice plasmid cDNA
library (JMT) Oryza sativa (japonica cultivar-group)
cDNA clone JMT--03-N19, mRNA sequence
Length = 575
Score = 101 bits (51), Expect = 5e-019
Identities = 78/87 (89%)
Strand = Plus / Minus
Query: 557 ttttgattcagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaac 616
|||||| |||||||| || ||||||||||| |||||||||| ||||| |||||||||||
Sbjct: 575 ttttgactcagcaaaacgttccttatcataagcatctaccaaatataccacagcatcaac 516
Query: 617 ctttgcgtagtaatccttccagacgcg 643
||| |||||||| ||||||||||||||
Sbjct: 515 cttggcgtagtagtccttccagacgcg 489
>gb|CF322156.1|CF322156 HD--13-K14.g1 OsHDAC1-overexpressing transgenic rice plasmid cDNA
library (HD) Oryza sativa (japonica cultivar-group) cDNA
clone HD--13-K14, mRNA sequence
Length = 590
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 267 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 326
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 327 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 386
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 387 gtggtgaagttgct 400
>gb|CV730316.1|CV730316 FLO--03-M20.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--03-M20,
mRNA sequence
Length = 490
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 236 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 295
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 296 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 355
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 356 gtggtgaagttgct 369
>gb|CV730969.1|CV730969 FLO--04-M12.g1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--04-M12,
mRNA sequence
Length = 491
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 337 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 396
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 397 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 456
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 457 gtggtgaagttgct 470
>gb|AACV01000591.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000591, whole
genome shotgun sequence
Length = 78605
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Minus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 59536 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 59477
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 59476 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 59417
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 59416 gtggtgaagttgct 59403
Score = 44.1 bits (22), Expect = 0.092
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||| |||||||| ||||||||||||||
Sbjct: 55340 aaccttggcgtagtagtccttccagacgcg 55311
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 8410895 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 8410954
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 8410955 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 8411014
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 8411015 gtggtgaagttgct 8411028
Score = 44.1 bits (22), Expect = 0.092
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||| |||||||| ||||||||||||||
Sbjct: 8415091 aaccttggcgtagtagtccttccagacgcg 8415120
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0705D01
Length = 147174
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 28228 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 28287
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 28288 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 28347
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 28348 gtggtgaagttgct 28361
Score = 44.1 bits (22), Expect = 0.092
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||| |||||||| ||||||||||||||
Sbjct: 32424 aaccttggcgtagtagtccttccagacgcg 32453
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 99.6 bits (50), Expect = 2e-018
Identities = 113/134 (84%)
Strand = Plus / Plus
Query: 300 ttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaacactg 359
|||||||| ||||| | ||| ||||| || |||||||||||||||||||| || || |||
Sbjct: 8464682 ttgatgtactgggacatccatttgaagccttcgccgtagcccatcttgcggacgacgctg 8464741
Query: 360 cacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgcccttcccg 419
|||||||| | ||| || ||||| || ||||||||| | ||||| || |||||||| |||
Sbjct: 8464742 cacatgaagatctccagaggccgcacgttggagtcggctaggttcacgttgcccttaccg 8464801
Query: 420 gttgtgaagttgct 433
|| |||||||||||
Sbjct: 8464802 gtggtgaagttgct 8464815
Score = 44.1 bits (22), Expect = 0.092
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 614 aacctttgcgtagtaatccttccagacgcg 643
|||||| |||||||| ||||||||||||||
Sbjct: 8468878 aaccttggcgtagtagtccttccagacgcg 8468907
>dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063C05, full
insert sequence
Length = 934
Score = 97.6 bits (49), Expect = 7e-018
Identities = 169/209 (80%)
Strand = Plus / Minus
Query: 294 ccctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaaca 353
|||||||||||||| | || ||||||||||| ||||| || |||||||||||||| ||
Sbjct: 713 ccctacttgatgtaccgtgacacccacttgaacccatccccatagcccatcttgcggacg 654
Query: 354 acactgcacatgaaaacctcaagtggccggacattggagtcgccaaggttgaccttgccc 413
| ||||||||||| ||||| || || || || ||||| ||||| ||| | ||| |||||
Sbjct: 653 atgctgcacatgaacacctccagggggcgaacgttggactcgccgaggctcaccctgccc 594
Query: 414 ttcccggttgtgaagttgctaaggcctaggtgataccgcagctcctcttcagaggcagca 473
|| ||||| ||||||||||| || || | ||| || || |||||||| || || || ||
Sbjct: 593 ttgccggtggtgaagttgctcagccccatgtggtagcggagctcctcctccgacgcggcg 534
Query: 474 tacgggatatcaatcttgttgccaaggat 502
|| ||||| || ||||||||||| |||||
Sbjct: 533 taggggatgtcgatcttgttgcccaggat 505
>gb|AU225884.1|AU225884 AU225884 Oryza sativa Koshihikari pistil Oryza sativa (japonica
cultivar-group) cDNA clone KP3-0927, mRNA sequence
Length = 384
Score = 93.7 bits (47), Expect = 1e-016
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 296 ctacttgatgtattgggagacccacttgaaaccatcgccgtagcccatcttgcgaacaac 355
|||||||||||| ||||||||||||||||| || || || |||||||||||||| |||||
Sbjct: 93 ctacttgatgtactgggagacccacttgaacccgtcaccatagcccatcttgcggacaac 34
Query: 356 actgcacatga 366
|||||||||||
Sbjct: 33 actgcacatga 23
Score = 48.1 bits (24), Expect = 0.006
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 53 caagtccttagtaaaggtcctacggaaaagcaaaagaatt 92
||||||||||||||| | |||| |||||||||||| ||||
Sbjct: 331 caagtccttagtaaacgccctatggaaaagcaaaaaaatt 292
>gb|CF279141.1|CF279141 14ETL--05-F10.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--05-F10, mRNA sequence
Length = 497
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 565 cagcaaatcgctccttatcatacgcatctaccaggtatactacagcatcaacctttgcgt 624
||||||| || ||||||||||| |||||||||| ||||| |||||||||||||| ||||
Sbjct: 497 cagcaaaacgttccttatcataagcatctaccaaatataccacagcatcaaccttggcgt 438
Query: 625 agtaatccttccagacgcg 643
|||| ||||||||||||||
Sbjct: 437 agtagtccttccagacgcg 419
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 835,980
Number of Sequences: 438736
Number of extensions: 835980
Number of successful extensions: 4878
Number of sequences better than 0.5: 97
Number of HSP's better than 0.5 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4527
Number of HSP's gapped (non-prelim): 349
length of query: 643
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 622
effective length of database: 2,791,206,460
effective search space: 1736130418120
effective search space used: 1736130418120
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)