BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.2
(1155 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV733041.1|CV733041 FLO--07-M13.b1 Rice flower lambda ph... 369 2e-099
dbj|AK100191.1| Oryza sativa (japonica cultivar-group) cDNA... 361 6e-097
gb|AACV01013018.1| Oryza sativa (japonica cultivar-group) c... 361 6e-097
gb|AACV01013020.1| Oryza sativa (japonica cultivar-group) c... 361 6e-097
dbj|AP003487.2| Oryza sativa (japonica cultivar-group) geno... 361 6e-097
dbj|AP003767.3| Oryza sativa (japonica cultivar-group) geno... 361 6e-097
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 361 6e-097
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 361 6e-097
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 361 6e-097
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 361 6e-097
dbj|AK070509.1| Oryza sativa (japonica cultivar-group) cDNA... 335 3e-089
gb|C73240.1|C73240 C73240 Rice panicle at flowering stage O... 313 1e-082
gb|AU172672.1|AU172672 AU172672 Rice panicle at flowering s... 264 1e-067
dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA... 258 6e-066
ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA 258 6e-066
dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chro... 206 2e-050
dbj|AP004039.3| Oryza sativa (japonica cultivar-group) geno... 206 2e-050
gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) c... 206 2e-050
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 206 2e-050
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 206 2e-050
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 206 2e-050
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 206 2e-050
gb|CZ444110.1|CZ444110 UCDRdSpm486_3.1 UCD RdSpm Rice Inser... 113 2e-022
dbj|AK072583.1| Oryza sativa (japonica cultivar-group) cDNA... 107 1e-020
ref|NM_196827.1| Oryza sativa (japonica cultivar-group) put... 107 1e-020
dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chro... 101 8e-019
ref|NT_107232.1| Oryza sativa (japonica cultivar-group) 101 8e-019
dbj|AP003724.2| Oryza sativa (japonica cultivar-group) geno... 101 8e-019
gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A0... 96 5e-017
gb|AC025905.3| Oryza sativa (japonica cultivar-group) chrom... 96 5e-017
gb|AACV01021719.1| Oryza sativa (japonica cultivar-group) c... 96 5e-017
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 96 5e-017
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 96 5e-017
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 96 5e-017
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 96 5e-017
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 96 5e-017
gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) c... 94 2e-016
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 94 2e-016
gb|AZ135244.1|AZ135244 OSJNBb0115A18r CUGI Rice BAC Library... 60 3e-006
gb|AACV01008547.1| Oryza sativa (japonica cultivar-group) c... 60 3e-006
ref|XM_471234.1| Oryza sativa (japonica cultivar-group), p... 60 3e-006
ref|NT_107194.1| Oryza sativa (japonica cultivar-group) 60 3e-006
gb|CH401184.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 60 3e-006
emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromoso... 60 3e-006
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 60 3e-006
gb|AACV01014423.1| Oryza sativa (japonica cultivar-group) c... 58 1e-005
gb|AU070353.1|AU070353 AU070353 Rice green shoot Oryza sati... 56 4e-005
emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC O... 48 0.011
ref|NT_107134.1| Oryza sativa (japonica cultivar-group) 48 0.011
gb|AACV01010416.1| Oryza sativa (japonica cultivar-group) c... 48 0.011
gb|AACV01022341.1| Oryza sativa (japonica cultivar-group) c... 48 0.011
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromoso... 48 0.011
emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromoso... 48 0.011
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 48 0.011
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.011
dbj|AK072592.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.042
gb|AC136521.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.042
gb|AACV01011622.1| Oryza sativa (japonica cultivar-group) c... 46 0.042
ref|NT_107206.1| Oryza sativa (japonica cultivar-group) 46 0.042
gb|CH401204.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.042
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.042
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.042
gb|AQ865437.1|AQ865437 nbeb0025I06f CUGI Rice BAC Library (... 44 0.17
dbj|AB156340.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.17
>gb|CV733041.1|CV733041 FLO--07-M13.b1 Rice flower lambda phage cDNA library (FLO) Oryza
sativa (japonica cultivar-group) cDNA clone FLO--07-M13,
mRNA sequence
Length = 503
Score = 369 bits (186), Expect = 2e-099
Identities = 288/322 (89%)
Strand = Plus / Plus
Query: 492 tgccgcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatca 551
||||||||||| | | ||| ||||||||||| || ||||||||||||||||||||| |||
Sbjct: 175 tgccgcgctgcaggttcggattcttccacgtcgtcaacaacgactacacgcactggctca 234
Query: 552 tgtacgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcg 611
||||||||||||| |||||||||||||| || |||||||||||||| ||| | |||||||
Sbjct: 235 tgtacgccatcggtggcaacatgaacccgacgatcatcagccaggggaacaggttcatcg 294
Query: 612 cccccgacgaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggact 671
| ||||||||| ||||||||||||||||||||| ||||||||||||||||| | || |
Sbjct: 295 cgcccgacgacttgaacgccaaggaggtgaccaagagggagtacacgccgtacgacgagt 354
Query: 672 acaaggagtgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacg 731
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct: 355 acaaggagtgggtgtggaagtcgcagggcgacgtgatgatgaacggcgccttctttaacg 414
Query: 732 agtccggcggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacg 791
|||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||
Sbjct: 415 agtccggcggccagaacgagcgcagctacgaccagctcgacttcatccctgccaagcacg 474
Query: 792 gccgctacgtcggtcagctcac 813
|| |||||||| ||||||||
Sbjct: 475 gcaagtacgtcggccagctcac 496
Score = 119 bits (60), Expect = 4e-024
Identities = 135/160 (84%)
Strand = Plus / Plus
Query: 313 ctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgtgtccaacag 372
|||||||||||| || ||||||| || | ||| || || ||||||||| | |||||| |
Sbjct: 5 ctgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccatctccaacgg 64
Query: 373 ccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacagcccgcagga 432
|||||||||| | ||||||||||| ||||| ||||||||||||||| | | | |||||
Sbjct: 65 ccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcgacgcccagga 124
Query: 433 cgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
|| |||||||||| |||| |||||||||||||||||||||
Sbjct: 125 cgaggtgatgcagatcaccgtggcgttcaaccacttcggc 164
>dbj|AK100191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035P11, full
insert sequence
Length = 1659
Score = 361 bits (182), Expect = 6e-097
Identities = 287/322 (89%)
Strand = Plus / Plus
Query: 492 tgccgcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatca 551
||||||||||| | | ||| ||||||||||| || ||||||||||||||||||||| |||
Sbjct: 1141 tgccgcgctgcaggttcggattcttccacgtcgtcaacaacgactacacgcactggctca 1200
Query: 552 tgtacgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcg 611
||||||||||||| |||||||||||||| || |||||||||||||| ||| | |||||||
Sbjct: 1201 tgtacgccatcggtggcaacatgaacccgacgatcatcagccaggggaacaggttcatcg 1260
Query: 612 cccccgacgaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggact 671
| ||||||||| ||||||||||||||||||||| ||||||||||||||||| | || |
Sbjct: 1261 cgcccgacgacttgaacgccaaggaggtgaccaagagggagtacacgccgtacgacgagt 1320
Query: 672 acaaggagtgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacg 731
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||
Sbjct: 1321 acaaggagtgggtgtggaagtcgcagggcgacgtgatgatgaacggcgccttccttaacg 1380
Query: 732 agtccggcggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacg 791
|||||||||||||||||||||||| |||||| | ||||||||||||| ||||||||||
Sbjct: 1381 agtccggcggccagaacgagcgcagctacgaccagctcgacttcatccctgccaagcacg 1440
Query: 792 gccgctacgtcggtcagctcac 813
|| |||||||| ||||||||
Sbjct: 1441 gcaagtacgtcggccagctcac 1462
Score = 327 bits (165), Expect = 8e-087
Identities = 392/469 (83%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 662 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 721
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 722 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 781
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 782 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 841
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 842 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 901
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 902 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 961
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 962 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 1021
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||| ||||| |
Sbjct: 1022 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccggcaacagcga 1081
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 1082 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 1130
>gb|AACV01013018.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013018, whole
genome shotgun sequence
Length = 32067
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 12377 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 12436
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 12437 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 12496
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 12497 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 12556
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 12557 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 12616
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 12617 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 12676
Query: 812 ac 813
||
Sbjct: 12677 ac 12678
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 11780 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 11839
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 11840 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 11899
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 11900 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 11959
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 11960 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 12019
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 12020 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 12079
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 12080 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 12139
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 12140 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 12199
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 12200 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 12248
Score = 264 bits (133), Expect = 1e-067
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||||| ||| |||| ||||||||||| ||| ||||| |||||| |||||||| |
Sbjct: 7650 atgcaggtaacgctggcattcaaccactttggcaaggggctcgtgcagaggatgccgagg 7709
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 7710 tgcaggtttggattcttccacatggtgaacaacgactacacgcactggctcatgtacgcc 7769
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||||||||||||| || |||||||||||||| ||| | |||| || ||||
Sbjct: 7770 atcggcggcaacatgaacccgacgatcatcagccaggggaacaggttcagggcaagcgac 7829
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| || |||||||||||||||| ||||||||||| ||| | || |||||||||
Sbjct: 7830 gacatgaagctcaaggaggtgaccaagagggagtacacgagctacgacgagtacaaggag 7889
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| || | | || ||||||||||||||||||||||||
Sbjct: 7890 tgggtgtggaagtcgcaggacgacctcttcctcaacggcgccttcttcaacgagtccggc 7949
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctac 799
|||| |||||||||| |||| || || ||||| |||||| ||||| | |||||||||||
Sbjct: 7950 ggccggaacgagcgccggtacaaccggctcgacctcatccaggccaggaacggccgctac 8009
Query: 800 gtcgg 804
|||||
Sbjct: 8010 gtcgg 8014
Score = 85.7 bits (43), Expect = 5e-014
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 7366 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 7425
Query: 304 catgtccagctgctccgacgggctgatcgac 334
|||||||| |||||||||||| || ||||||
Sbjct: 7426 catgtccaactgctccgacggcctcatcgac 7456
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 7130 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 7188
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 7189 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 7248
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 7249 gatcacggtgcag 7261
>gb|AACV01013020.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013020,
whole genome shotgun sequence
Length = 5783
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 334 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 393
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 394 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 453
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 454 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 513
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 514 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 573
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 574 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 633
Query: 812 ac 813
||
Sbjct: 634 ac 635
Score = 147 bits (74), Expect = 2e-032
Identities = 158/186 (84%)
Strand = Plus / Plus
Query: 287 tggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtgaacggg 346
|||||||||||||| |||||||||| |||||||||||| || ||||||| || | |||
Sbjct: 20 tggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgccgtcagcggc 79
Query: 347 tcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgctgttc 406
|| || ||||||||| | ||||| ||||||||||| | ||||||||||| ||||| |||
Sbjct: 80 tccaccgccatcaccatctccaaaggccacttcaccaagcacgaccacgtcatgctcttc 139
Query: 407 ggcgccagcaacgacagcccgcaggacgcggtgatgcaggtcacggtggcgttcaaccac 466
|||||||||||| | | | ||||||| |||||||||| |||| |||||||||||||||
Sbjct: 140 ggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcgttcaaccac 199
Query: 467 ttcggc 472
||||||
Sbjct: 200 ttcggc 205
>dbj|AP003487.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0007O20
Length = 147363
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 99719 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 99778
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 99779 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 99838
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 99839 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 99898
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 99899 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 99958
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 99959 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 100018
Query: 812 ac 813
||
Sbjct: 100019 ac 100020
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Minus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 57725 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 57666
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 57665 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 57606
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 57605 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 57546
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 57545 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 57486
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 57485 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 57426
Query: 812 ac 813
||
Sbjct: 57425 ac 57424
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 99122 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 99181
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 99182 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 99241
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 99242 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 99301
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 99302 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 99361
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 99362 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 99421
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 99422 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 99481
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 99482 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 99541
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 99542 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 99590
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Minus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 58322 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 58263
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 58262 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 58203
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 58202 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 58143
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 58142 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 58083
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 58082 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 58023
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 58022 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 57963
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 57962 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 57903
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 57902 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 57854
Score = 264 bits (133), Expect = 1e-067
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||||| ||| |||| ||||||||||| ||| ||||| |||||| |||||||| |
Sbjct: 94992 atgcaggtaacgctggcattcaaccactttggcaaggggctcgtgcagaggatgccgagg 95051
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 95052 tgcaggtttggattcttccacatggtgaacaacgactacacgcactggctcatgtacgcc 95111
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||||||||||||| || |||||||||||||| ||| | |||| || ||||
Sbjct: 95112 atcggcggcaacatgaacccgacgatcatcagccaggggaacaggttcagggcaagcgac 95171
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| || |||||||||||||||| ||||||||||| ||| | || |||||||||
Sbjct: 95172 gacatgaagctcaaggaggtgaccaagagggagtacacgagctacgacgagtacaaggag 95231
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| || | | || ||||||||||||||||||||||||
Sbjct: 95232 tgggtgtggaagtcgcaggacgacctcttcctcaacggcgccttcttcaacgagtccggc 95291
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctac 799
|||| |||||||||| |||| || || ||||| |||||| ||||| | |||||||||||
Sbjct: 95292 ggccggaacgagcgccggtacaaccggctcgacctcatccaggccaggaacggccgctac 95351
Query: 800 gtcgg 804
|||||
Sbjct: 95352 gtcgg 95356
Score = 85.7 bits (43), Expect = 5e-014
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 94708 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 94767
Query: 304 catgtccagctgctccgacgggctgatcgac 334
|||||||| |||||||||||| || ||||||
Sbjct: 94768 catgtccaactgctccgacggcctcatcgac 94798
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 94472 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 94530
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 94531 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 94590
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 94591 gatcacggtgcag 94603
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0036F10
Length = 149415
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 9376 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 9435
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 9436 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 9495
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 9496 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 9555
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 9556 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 9615
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 9616 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 9675
Query: 812 ac 813
||
Sbjct: 9676 ac 9677
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 8779 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 8838
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 8839 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 8898
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 8899 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 8958
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 8959 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 9018
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 9019 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 9078
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 9079 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 9138
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 9139 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 9198
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 9199 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 9247
Score = 264 bits (133), Expect = 1e-067
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||||| ||| |||| ||||||||||| ||| ||||| |||||| |||||||| |
Sbjct: 4649 atgcaggtaacgctggcattcaaccactttggcaaggggctcgtgcagaggatgccgagg 4708
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 4709 tgcaggtttggattcttccacatggtgaacaacgactacacgcactggctcatgtacgcc 4768
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||||||||||||| || |||||||||||||| ||| | |||| || ||||
Sbjct: 4769 atcggcggcaacatgaacccgacgatcatcagccaggggaacaggttcagggcaagcgac 4828
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| || |||||||||||||||| ||||||||||| ||| | || |||||||||
Sbjct: 4829 gacatgaagctcaaggaggtgaccaagagggagtacacgagctacgacgagtacaaggag 4888
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| || | | || ||||||||||||||||||||||||
Sbjct: 4889 tgggtgtggaagtcgcaggacgacctcttcctcaacggcgccttcttcaacgagtccggc 4948
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctac 799
|||| |||||||||| |||| || || ||||| |||||| ||||| | |||||||||||
Sbjct: 4949 ggccggaacgagcgccggtacaaccggctcgacctcatccaggccaggaacggccgctac 5008
Query: 800 gtcgg 804
|||||
Sbjct: 5009 gtcgg 5013
Score = 85.7 bits (43), Expect = 5e-014
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 4365 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 4424
Query: 304 catgtccagctgctccgacgggctgatcgac 334
|||||||| |||||||||||| || ||||||
Sbjct: 4425 catgtccaactgctccgacggcctcatcgac 4455
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 4129 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 4187
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 4188 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 4247
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 4248 gatcacggtgcag 4260
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2341495 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2341554
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2341555 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2341614
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2341615 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2341674
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2341675 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2341734
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2341735 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2341794
Query: 812 ac 813
||
Sbjct: 2341795 ac 2341796
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Minus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2299501 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2299442
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2299441 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2299382
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2299381 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2299322
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2299321 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2299262
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2299261 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2299202
Query: 812 ac 813
||
Sbjct: 2299201 ac 2299200
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 2340898 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 2340957
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 2340958 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 2341017
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 2341018 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 2341077
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 2341078 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 2341137
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 2341138 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 2341197
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 2341198 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 2341257
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 2341258 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 2341317
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 2341318 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 2341366
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Minus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 2300098 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 2300039
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 2300038 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 2299979
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 2299978 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 2299919
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 2299918 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 2299859
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 2299858 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 2299799
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 2299798 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 2299739
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 2299738 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 2299679
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 2299678 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 2299630
Score = 264 bits (133), Expect = 1e-067
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||||| ||| |||| ||||||||||| ||| ||||| |||||| |||||||| |
Sbjct: 2336768 atgcaggtaacgctggcattcaaccactttggcaaggggctcgtgcagaggatgccgagg 2336827
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 2336828 tgcaggtttggattcttccacatggtgaacaacgactacacgcactggctcatgtacgcc 2336887
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||||||||||||| || |||||||||||||| ||| | |||| || ||||
Sbjct: 2336888 atcggcggcaacatgaacccgacgatcatcagccaggggaacaggttcagggcaagcgac 2336947
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| || |||||||||||||||| ||||||||||| ||| | || |||||||||
Sbjct: 2336948 gacatgaagctcaaggaggtgaccaagagggagtacacgagctacgacgagtacaaggag 2337007
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| || | | || ||||||||||||||||||||||||
Sbjct: 2337008 tgggtgtggaagtcgcaggacgacctcttcctcaacggcgccttcttcaacgagtccggc 2337067
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctac 799
|||| |||||||||| |||| || || ||||| |||||| ||||| | |||||||||||
Sbjct: 2337068 ggccggaacgagcgccggtacaaccggctcgacctcatccaggccaggaacggccgctac 2337127
Query: 800 gtcgg 804
|||||
Sbjct: 2337128 gtcgg 2337132
Score = 85.7 bits (43), Expect = 5e-014
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 2336484 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 2336543
Query: 304 catgtccagctgctccgacgggctgatcgac 334
|||||||| |||||||||||| || ||||||
Sbjct: 2336544 catgtccaactgctccgacggcctcatcgac 2336574
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 2336248 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 2336306
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 2336307 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 2336366
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 2336367 gatcacggtgcag 2336379
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2324147 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2324206
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2324207 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2324266
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2324267 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2324326
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2324327 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2324386
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2324387 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2324446
Query: 812 ac 813
||
Sbjct: 2324447 ac 2324448
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Minus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2285792 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2285733
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2285732 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2285673
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2285672 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2285613
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2285612 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2285553
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2285552 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2285493
Query: 812 ac 813
||
Sbjct: 2285492 ac 2285491
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Minus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 2286389 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 2286330
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 2286329 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 2286270
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 2286269 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 2286210
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 2286209 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 2286150
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 2286149 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 2286090
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 2286089 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 2286030
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 2286029 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 2285970
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 2285969 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 2285921
Score = 264 bits (133), Expect = 1e-067
Identities = 307/365 (84%)
Strand = Plus / Minus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||||| ||| |||| ||||||||||| ||| ||||| |||||| |||||||| |
Sbjct: 2290519 atgcaggtaacgctggcattcaaccactttggcaaggggctcgtgcagaggatgccgagg 2290460
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 2290459 tgcaggtttggattcttccacatggtgaacaacgactacacgcactggctcatgtacgcc 2290400
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||||||||||||| || |||||||||||||| ||| | |||| || ||||
Sbjct: 2290399 atcggcggcaacatgaacccgacgatcatcagccaggggaacaggttcagggcaagcgac 2290340
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| || |||||||||||||||| ||||||||||| ||| | || |||||||||
Sbjct: 2290339 gacatgaagctcaaggaggtgaccaagagggagtacacgagctacgacgagtacaaggag 2290280
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| || | | || ||||||||||||||||||||||||
Sbjct: 2290279 tgggtgtggaagtcgcaggacgacctcttcctcaacggcgccttcttcaacgagtccggc 2290220
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctac 799
|||| |||||||||| |||| || || ||||| |||||| ||||| | |||||||||||
Sbjct: 2290219 ggccggaacgagcgccggtacaaccggctcgacctcatccaggccaggaacggccgctac 2290160
Query: 800 gtcgg 804
|||||
Sbjct: 2290159 gtcgg 2290155
Score = 147 bits (74), Expect = 2e-032
Identities = 158/186 (84%)
Strand = Plus / Plus
Query: 287 tggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtgaacggg 346
|||||||||||||| |||||||||| |||||||||||| || ||||||| || | |||
Sbjct: 2323833 tggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgccgtcagcggc 2323892
Query: 347 tcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgctgttc 406
|| || ||||||||| | ||||| ||||||||||| | ||||||||||| ||||| |||
Sbjct: 2323893 tccaccgccatcaccatctccaaaggccacttcaccaagcacgaccacgtcatgctcttc 2323952
Query: 407 ggcgccagcaacgacagcccgcaggacgcggtgatgcaggtcacggtggcgttcaaccac 466
|||||||||||| | | | ||||||| |||||||||| |||| |||||||||||||||
Sbjct: 2323953 ggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcgttcaaccac 2324012
Query: 467 ttcggc 472
||||||
Sbjct: 2324013 ttcggc 2324018
Score = 85.7 bits (43), Expect = 5e-014
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 2290803 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 2290744
Query: 304 catgtccagctgctccgacgggctgatcgac 334
|||||||| |||||||||||| || ||||||
Sbjct: 2290743 catgtccaactgctccgacggcctcatcgac 2290713
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 2291039 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 2290981
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 2290980 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 2290921
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 2290920 gatcacggtgcag 2290908
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2324147 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2324206
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2324207 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2324266
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2324267 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2324326
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2324327 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2324386
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2324387 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2324446
Query: 812 ac 813
||
Sbjct: 2324447 ac 2324448
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Minus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2285792 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2285733
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2285732 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2285673
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2285672 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2285613
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2285612 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2285553
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2285552 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2285493
Query: 812 ac 813
||
Sbjct: 2285492 ac 2285491
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Minus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 2286389 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 2286330
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 2286329 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 2286270
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 2286269 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 2286210
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 2286209 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 2286150
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 2286149 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 2286090
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 2286089 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 2286030
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 2286029 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 2285970
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 2285969 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 2285921
Score = 264 bits (133), Expect = 1e-067
Identities = 307/365 (84%)
Strand = Plus / Minus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||||| ||| |||| ||||||||||| ||| ||||| |||||| |||||||| |
Sbjct: 2290519 atgcaggtaacgctggcattcaaccactttggcaaggggctcgtgcagaggatgccgagg 2290460
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 2290459 tgcaggtttggattcttccacatggtgaacaacgactacacgcactggctcatgtacgcc 2290400
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||||||||||||| || |||||||||||||| ||| | |||| || ||||
Sbjct: 2290399 atcggcggcaacatgaacccgacgatcatcagccaggggaacaggttcagggcaagcgac 2290340
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| || |||||||||||||||| ||||||||||| ||| | || |||||||||
Sbjct: 2290339 gacatgaagctcaaggaggtgaccaagagggagtacacgagctacgacgagtacaaggag 2290280
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| || | | || ||||||||||||||||||||||||
Sbjct: 2290279 tgggtgtggaagtcgcaggacgacctcttcctcaacggcgccttcttcaacgagtccggc 2290220
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctac 799
|||| |||||||||| |||| || || ||||| |||||| ||||| | |||||||||||
Sbjct: 2290219 ggccggaacgagcgccggtacaaccggctcgacctcatccaggccaggaacggccgctac 2290160
Query: 800 gtcgg 804
|||||
Sbjct: 2290159 gtcgg 2290155
Score = 147 bits (74), Expect = 2e-032
Identities = 158/186 (84%)
Strand = Plus / Plus
Query: 287 tggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtgaacggg 346
|||||||||||||| |||||||||| |||||||||||| || ||||||| || | |||
Sbjct: 2323833 tggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgccgtcagcggc 2323892
Query: 347 tcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgctgttc 406
|| || ||||||||| | ||||| ||||||||||| | ||||||||||| ||||| |||
Sbjct: 2323893 tccaccgccatcaccatctccaaaggccacttcaccaagcacgaccacgtcatgctcttc 2323952
Query: 407 ggcgccagcaacgacagcccgcaggacgcggtgatgcaggtcacggtggcgttcaaccac 466
|||||||||||| | | | ||||||| |||||||||| |||| |||||||||||||||
Sbjct: 2323953 ggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcgttcaaccac 2324012
Query: 467 ttcggc 472
||||||
Sbjct: 2324013 ttcggc 2324018
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||||||||||||||||||| ||||||| |||||||| || | || |
Sbjct: 21522323 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccatcggagggagcaag 21522382
Query: 575 aaccccaccatcatcagccaggg 597
|| || || ||||||||||||||
Sbjct: 21522383 aaaccgacgatcatcagccaggg 21522405
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||| ||||||||||||||| | |||||||||||||| || | || |
Sbjct: 21525738 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccatcggagggagcaag 21525797
Query: 575 aaccccaccatcatcagccagggcaaccg 603
||||| || ||||| |||||||| |||||
Sbjct: 21525798 aacccgacgatcattagccaggggaaccg 21525826
Score = 85.7 bits (43), Expect = 5e-014
Identities = 79/91 (86%)
Strand = Plus / Minus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 2290803 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 2290744
Query: 304 catgtccagctgctccgacgggctgatcgac 334
|||||||| |||||||||||| || ||||||
Sbjct: 2290743 catgtccaactgctccgacggcctcatcgac 2290713
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 21520836 acaagacgatcgacgggcggggagcgcaggtgc 21520868
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 2291039 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 2290981
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 2290980 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 2290921
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 2290920 gatcacggtgcag 2290908
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgg 477
|||||| |||| || || ||||||||||||||||||||
Sbjct: 21521201 atgcagatcaccgtcgctttcaaccacttcggccgcgg 21521238
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Plus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2377918 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2377977
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2377978 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2378037
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2378038 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2378097
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2378098 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2378157
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2378158 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2378217
Query: 812 ac 813
||
Sbjct: 2378218 ac 2378219
Score = 361 bits (182), Expect = 6e-097
Identities = 272/302 (90%)
Strand = Plus / Minus
Query: 512 ttcttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaac 571
||||||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 2335924 ttcttccacgtcgtcaacaacgactacacgcactggctcatgtacgccatcggtggcaac 2335865
Query: 572 atgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgcc 631
|||||||| || |||||||||||||| ||| | |||||||| ||||||||| ||||||
Sbjct: 2335864 atgaacccgacgatcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgcc 2335805
Query: 632 aaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggagtgggtgtggaag 691
||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 2335804 aaggaggtgaccaagagggagtacacgccgtacgacgagtacaaggagtgggtgtggaag 2335745
Query: 692 tcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggcggccagaacgag 751
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2335744 tcgcagggcgacgtgatgatgaacggcgccttctttaacgagtccggcggccagaacgag 2335685
Query: 752 cgcaagtacgacaggttcgacttcatcccggccaagcacggccgctacgtcggtcagctc 811
|||| |||||| | ||||||||||||| |||||||||||| |||||||| ||||||
Sbjct: 2335684 cgcagctacgaccagctcgacttcatccctgccaagcacggcaagtacgtcggccagctc 2335625
Query: 812 ac 813
||
Sbjct: 2335624 ac 2335623
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Plus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 2377321 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 2377380
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 2377381 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 2377440
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 2377441 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 2377500
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 2377501 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 2377560
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 2377561 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 2377620
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 2377621 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 2377680
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 2377681 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 2377740
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 2377741 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 2377789
Score = 335 bits (169), Expect = 3e-089
Identities = 393/469 (83%)
Strand = Plus / Minus
Query: 4 ggaccggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagct 63
|||||||||| |||||||||||||||||||||||||| | ||| |||| |||||||||||
Sbjct: 2336521 ggaccggccgatgtggatcgtgttcgcgcgcgacatgatcatccagctccggcaggagct 2336462
Query: 64 gatcgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgc 123
||||||||||||||||||||| |||||||| || ||||||||||||||||||| |||
Sbjct: 2336461 gatcgtgaaccacaacaagaccatcgacggccgtggcgcgcaggtgcacatcaccggcgc 2336402
Query: 124 gcagatcacgctgcagaacgtgcagaacgnnnncctgcacaacctgcacatccacgactc 183
||||||||||| ||| ||| ||| | | | | |||||| | ||||||||| ||||
Sbjct: 2336401 ccagatcacgctccagggcgtccagcatgtgatcatccacaacgtccacatccaccactc 2336342
Query: 184 caaggcgcactcgggcggcatgatccgcgactcgaagcggcactacgggctgcgcacgcg 243
| ||||| |||||||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 2336341 ggtgccgcacggcggcggcatgatccgcgactccaagcgccactacggcctccgcacgcg 2336282
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
||||||||||||||| ||||| | |||| ||| |||| | |||||||||||||| ||
Sbjct: 2336281 cagcgacggcgacggcatctccatcatgtcctcctccaacatctggatcgaccacgtctc 2336222
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || ||||||| || | ||| || || ||||||||| |
Sbjct: 2336221 catgtccaactgctccgacggcctcatcgacgccgtcagcggctccaccgccatcaccat 2336162
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||| |
Sbjct: 2336161 ctccaacggccacttcaccaagcacgaccacgtcatgctcttcggcgccagcaacagcga 2336102
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggc 472
| | ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct: 2336101 cgcccaggacgaggtgatgcagatcaccgtggcgttcaaccacttcggc 2336053
Score = 264 bits (133), Expect = 1e-067
Identities = 307/365 (84%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||||| ||| |||| ||||||||||| ||| ||||| |||||| |||||||| |
Sbjct: 2373191 atgcaggtaacgctggcattcaaccactttggcaaggggctcgtgcagaggatgccgagg 2373250
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 2373251 tgcaggtttggattcttccacatggtgaacaacgactacacgcactggctcatgtacgcc 2373310
Query: 560 atcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccccgac 619
|||||||||||||||||||| || |||||||||||||| ||| | |||| || ||||
Sbjct: 2373311 atcggcggcaacatgaacccgacgatcatcagccaggggaacaggttcagggcaagcgac 2373370
Query: 620 gaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggactacaaggag 679
||| || |||||||||||||||| ||||||||||| ||| | || |||||||||
Sbjct: 2373371 gacatgaagctcaaggaggtgaccaagagggagtacacgagctacgacgagtacaaggag 2373430
Query: 680 tgggtgtggaagtcgcagggcgacgtcatgatgaatggcgccttcttcaacgagtccggc 739
||||||||||||||||||| |||| || | | || ||||||||||||||||||||||||
Sbjct: 2373431 tgggtgtggaagtcgcaggacgacctcttcctcaacggcgccttcttcaacgagtccggc 2373490
Query: 740 ggccagaacgagcgcaagtacgacaggttcgacttcatcccggccaagcacggccgctac 799
|||| |||||||||| |||| || || ||||| |||||| ||||| | |||||||||||
Sbjct: 2373491 ggccggaacgagcgccggtacaaccggctcgacctcatccaggccaggaacggccgctac 2373550
Query: 800 gtcgg 804
|||||
Sbjct: 2373551 gtcgg 2373555
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||||||||||||||||||| ||||||| |||||||| || | || |
Sbjct: 22474689 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccatcggagggagcaag 22474748
Query: 575 aaccccaccatcatcagccaggg 597
||||| || ||||||||||||||
Sbjct: 22474749 aacccgacgatcatcagccaggg 22474771
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||| ||||||||||||||| | |||||||||||||| || | || |
Sbjct: 22478104 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccatcggagggagcaag 22478163
Query: 575 aaccccaccatcatcagccagggcaaccg 603
||||| || ||||| |||||||| |||||
Sbjct: 22478164 aacccgacgatcattagccaggggaaccg 22478192
Score = 85.7 bits (43), Expect = 5e-014
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 2372907 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 2372966
Query: 304 catgtccagctgctccgacgggctgatcgac 334
|||||||| |||||||||||| || ||||||
Sbjct: 2372967 catgtccaactgctccgacggcctcatcgac 2372997
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 22474136 acaagacgatcgacgggcggggagcgcaggtgc 22474168
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 2372671 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 2372729
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 2372730 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 2372789
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 2372790 gatcacggtgcag 2372802
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgg 477
|||||| |||| || || ||||||||||||||||||||
Sbjct: 22474501 atgcagatcaccgtcgctttcaaccacttcggccgcgg 22474538
>dbj|AK070509.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054E18, full
insert sequence
Length = 1870
Score = 335 bits (169), Expect = 3e-089
Identities = 463/561 (82%)
Strand = Plus / Plus
Query: 244 gagcgacggcgacggcgtctccgtgctgtcgtccagcaacgtgtggatcgaccacgtgtc 303
|||||||||||||||| ||||||| || ||||||||| | |||||||||||||| ||
Sbjct: 927 gagcgacggcgacggcatctccgtcatgggctccagcaacatctggatcgaccacgtctc 986
Query: 304 catgtccagctgctccgacgggctgatcgacgtggtgaacgggtcgacggccatcaccgt 363
|||||||| |||||||||||| || |||||| | |||| || || ||||||||| |
Sbjct: 987 catgtccaactgctccgacggcctcatcgacatcaccgacggctccaccgccatcaccat 1046
Query: 364 gtccaacagccacttcaccgaccacgaccacgtgatgctgttcggcgccagcaacgacag 423
|||||| |||||||||| | ||||| ||||||||||||||||| || || |||||
Sbjct: 1047 ctccaactcccacttcaccaagcacgatcacgtgatgctgttcggtgcacgcgacgactc 1106
Query: 424 cccgcaggacgcggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggt 483
||| ||||| | | |||||||| ||| |||| ||||||||||| ||| ||||| ||
Sbjct: 1107 gccgaaggacaagatcatgcaggtaacgctggcattcaaccactttggcaaggggctcgt 1166
Query: 484 gcagcggatgccgcgctgccgctacggcttcttccacgtggtgaacaacgactacacgca 543
|||| |||||||| | ||| | | || ||||||||| ||||||||||||||||||||||
Sbjct: 1167 gcagaggatgccgaggtgcaggtttggattcttccacatggtgaacaacgactacacgca 1226
Query: 544 ctggatcatgtacgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccg 603
|||| ||||||||||||||||||||||||||||||| || |||||||||||||| ||| |
Sbjct: 1227 ctggctcatgtacgccatcggcggcaacatgaacccgacgatcatcagccaggggaacag 1286
Query: 604 cttcatcgcccccgacgaccccaacgccaaggaggtgaccaagcgggagtacacgccgta 663
|||| || ||||||| || |||||||||||||||| ||||||||||| ||
Sbjct: 1287 gttcagggcaagcgacgacatgaagctcaaggaggtgaccaagagggagtacacgagcta 1346
Query: 664 caaggactacaaggagtgggtgtggaagtcgcagggcgacgtcatgatgaatggcgcctt 723
| | || |||||||||||||||||||||||||||| |||| || | | || ||||||||
Sbjct: 1347 cgacgagtacaaggagtgggtgtggaagtcgcaggacgacctcttcctcaacggcgcctt 1406
Query: 724 cttcaacgagtccggcggccagaacgagcgcaagtacgacaggttcgacttcatcccggc 783
|||||||||||||||||||| |||||||||| |||| || || ||||| |||||| |||
Sbjct: 1407 cttcaacgagtccggcggccggaacgagcgccggtacaaccggctcgacctcatccaggc 1466
Query: 784 caagcacggccgctacgtcgg 804
|| | ||||||||||||||||
Sbjct: 1467 caggaacggccgctacgtcgg 1487
Score = 58.0 bits (29), Expect = 1e-005
Identities = 109/133 (81%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 8 cggccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggca-ggagctgat 66
||||||||||||||||| |||||||| |||||||||| ||| || || |||||| ||
Sbjct: 691 cggccgctgtggatcgtcttcgcgcggagcatggtgatcaggct-cgccaaggagctcat 749
Query: 67 cgtgaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatcatgttcgcgca 126
||| | | | ||||||| |||||||| || ||||||||||||||| ||| ||||||
Sbjct: 750 cgtcaccagcgacaagaccatcgacggccgcggcgcgcaggtgcacgtcaccggcgcgca 809
Query: 127 gatcacgctgcag 139
||||||| |||||
Sbjct: 810 gatcacggtgcag 822
>gb|C73240.1|C73240 C73240 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3490_1A, mRNA sequence
Length = 405
Score = 313 bits (158), Expect = 1e-082
Identities = 286/324 (88%), Gaps = 5/324 (1%)
Strand = Plus / Plus
Query: 492 tgccgcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatca 551
||||||||||| | | ||| ||||||||||| || ||||||||||||||||||||| |||
Sbjct: 2 tgccgcgctgcaggttcggattcttccacgtcgtcaacaacgactacacgcactggctca 61
Query: 552 tgtacgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcg 611
||||||||||||| |||||||||||||| || |||||||||||||| ||| | |||||||
Sbjct: 62 tgtacgccatcggtggcaacatgaacccgacgatcatcagccaggggaacaggttcatcg 121
Query: 612 cccccgacgaccccaacgccaaggaggtgaccaagcgggagtacacgccgtacaaggact 671
| ||||||||| ||||||||||||||||||||| ||||||||||||||||| | || |
Sbjct: 122 cgcccgacgacttgaacgccaaggaggtgaccaagagggagtacacgccgtacgacgagt 181
Query: 672 acaaggagtgggtgtggaagtcgcagggcgacgt-catgatgaatggcgccttcttcaac 730
|||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||
Sbjct: 182 acaaggagtgggtgtggaagtcgcagggcg-cgtggatgatgaacggcgccttctttaac 240
Query: 731 gagtccggcggccagaacgagcgcaagtac-gacaggttcgacttcatcccggccaagca 789
||||||||||||||||||||||||| ||| ||| | |||| |||||||| ||||||||
Sbjct: 241 gagtccggcggccagaacgagcgca--tactgaccagctcganttcatccctgccaagca 298
Query: 790 cggccgctacgtcggtcagctcac 813
|||| |||||||| ||||||||
Sbjct: 299 cggcaagtacgtcggccagctcac 322
>gb|AU172672.1|AU172672 AU172672 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E3490, mRNA sequence
Length = 451
Score = 264 bits (133), Expect = 1e-067
Identities = 205/229 (89%)
Strand = Plus / Plus
Query: 585 tcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaaggaggtgacca 644
||||||||||||| ||| | |||||||| ||||||||| |||||||||||||||||||
Sbjct: 1 tcatcagccaggggaacaggttcatcgcgcccgacgacttgaacgccaaggaggtgacca 60
Query: 645 agcgggagtacacgccgtacaaggactacaaggagtgggtgtggaagtcgcagggcgacg 704
|| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 61 agagggagtacacgccgtacgacgagtacaaggagtgggtgtggaagtcgcagggcgacg 120
Query: 705 tcatgatgaatggcgccttcttcaacgagtccggcggccagaacgagcgcaagtacgaca 764
| |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 121 tgatgatgaacggcgccttctttaacgagtccggcggccagaacgagcgcagctacgacc 180
Query: 765 ggttcgacttcatcccggccaagcacggccgctacgtcggtcagctcac 813
| ||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct: 181 agctcgacttcatccctgccaagcacggcaagtacgtcggccagctcac 229
>dbj|AK101009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148H12, full
insert sequence
Length = 1825
Score = 258 bits (130), Expect = 6e-066
Identities = 283/334 (84%)
Strand = Plus / Plus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 934 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 993
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 994 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 1053
Query: 402 tgttcggcgccagcaacgacagcccgcaggacgcggtgatgcaggtcacggtggcgttca 461
|||||||||||||| || ||||||||| |||||||||| |||| ||||||||||
Sbjct: 1054 tgttcggcgccagcgactcgtacccgcaggataaggtgatgcagatcaccgtggcgttca 1113
Query: 462 accacttcggccgcgggctggtgcagcggatgccgcgctgccgctacggcttcttccacg 521
||||||||||||| ||||| ||||||||||||||||| ||||| | || ||||||||||
Sbjct: 1114 accacttcggccgtgggctcgtgcagcggatgccgcgatgccggtgggggttcttccacg 1173
Query: 522 tggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatgaacccca 581
| || ||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |
Sbjct: 1174 tcgtcaacaacgactacacgcactggctcatgtacgccatcggcggcggcatgagcccta 1233
Query: 582 ccatcatcagccagggcaaccgcttcatcgcccc 615
||||| |||||||||||||||| | |||||||||
Sbjct: 1234 ccatcctcagccagggcaaccgatacatcgcccc 1267
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 724 acaagaccatcgacggccgcggcgcgcaggtgcacatc 761
>ref|XM_464629.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1825
Score = 258 bits (130), Expect = 6e-066
Identities = 283/334 (84%)
Strand = Plus / Plus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 934 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 993
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 994 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 1053
Query: 402 tgttcggcgccagcaacgacagcccgcaggacgcggtgatgcaggtcacggtggcgttca 461
|||||||||||||| || ||||||||| |||||||||| |||| ||||||||||
Sbjct: 1054 tgttcggcgccagcgactcgtacccgcaggataaggtgatgcagatcaccgtggcgttca 1113
Query: 462 accacttcggccgcgggctggtgcagcggatgccgcgctgccgctacggcttcttccacg 521
||||||||||||| ||||| ||||||||||||||||| ||||| | || ||||||||||
Sbjct: 1114 accacttcggccgtgggctcgtgcagcggatgccgcgatgccggtgggggttcttccacg 1173
Query: 522 tggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatgaacccca 581
| || ||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |
Sbjct: 1174 tcgtcaacaacgactacacgcactggctcatgtacgccatcggcggcggcatgagcccta 1233
Query: 582 ccatcatcagccagggcaaccgcttcatcgcccc 615
||||| |||||||||||||||| | |||||||||
Sbjct: 1234 ccatcctcagccagggcaaccgatacatcgcccc 1267
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 724 acaagaccatcgacggccgcggcgcgcaggtgcacatc 761
>dbj|AP004780.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0542A02, ***
SEQUENCING IN PROGRESS ***
Length = 137445
Score = 206 bits (104), Expect = 2e-050
Identities = 161/180 (89%)
Strand = Plus / Plus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
|||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 126636 ggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgcc 126695
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
||| ||||| | || ||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 126696 gcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgta 126755
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccc 615
||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||||
Sbjct: 126756 cgccatcggcggcggcatgagccctaccatcctcagccagggcaaccgatacatcgcccc 126815
Score = 83.8 bits (42), Expect = 2e-013
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 126301 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 126360
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 126361 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 126420
Query: 402 tgttcggcgccagc 415
||||||||||||||
Sbjct: 126421 tgttcggcgccagc 126434
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 126091 acaagaccatcgacggccgcggcgcgcaggtgcacatc 126128
>dbj|AP004039.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1006_D05
Length = 128178
Score = 206 bits (104), Expect = 2e-050
Identities = 161/180 (89%)
Strand = Plus / Minus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
|||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 41664 ggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgcc 41605
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
||| ||||| | || ||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 41604 gcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgta 41545
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccc 615
||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||||
Sbjct: 41544 cgccatcggcggcggcatgagccctaccatcctcagccagggcaaccgatacatcgcccc 41485
Score = 83.8 bits (42), Expect = 2e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 41999 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 41940
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 41939 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 41880
Query: 402 tgttcggcgccagc 415
||||||||||||||
Sbjct: 41879 tgttcggcgccagc 41866
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 42209 acaagaccatcgacggccgcggcgcgcaggtgcacatc 42172
>gb|AACV01003607.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003607, whole
genome shotgun sequence
Length = 8977
Score = 206 bits (104), Expect = 2e-050
Identities = 161/180 (89%)
Strand = Plus / Plus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
|||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 7721 ggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgcc 7780
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
||| ||||| | || ||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 7781 gcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgta 7840
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccc 615
||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||||
Sbjct: 7841 cgccatcggcggcggcatgagccctaccatcctcagccagggcaaccgatacatcgcccc 7900
Score = 83.8 bits (42), Expect = 2e-013
Identities = 111/134 (82%)
Strand = Plus / Plus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 7386 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 7445
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 7446 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 7505
Query: 402 tgttcggcgccagc 415
||||||||||||||
Sbjct: 7506 tgttcggcgccagc 7519
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 7176 acaagaccatcgacggccgcggcgcgcaggtgcacatc 7213
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 206 bits (104), Expect = 2e-050
Identities = 161/180 (89%)
Strand = Plus / Minus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
|||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 430053 ggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgcc 429994
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
||| ||||| | || ||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 429993 gcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgta 429934
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccc 615
||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||||
Sbjct: 429933 cgccatcggcggcggcatgagccctaccatcctcagccagggcaaccgatacatcgcccc 429874
Score = 83.8 bits (42), Expect = 2e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 430388 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 430329
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 430328 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 430269
Query: 402 tgttcggcgccagc 415
||||||||||||||
Sbjct: 430268 tgttcggcgccagc 430255
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 430598 acaagaccatcgacggccgcggcgcgcaggtgcacatc 430561
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 206 bits (104), Expect = 2e-050
Identities = 161/180 (89%)
Strand = Plus / Minus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
|||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6517729 ggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgcc 6517670
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
||| ||||| | || ||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 6517669 gcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgta 6517610
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccc 615
||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||||
Sbjct: 6517609 cgccatcggcggcggcatgagccctaccatcctcagccagggcaaccgatacatcgcccc 6517550
Score = 83.8 bits (42), Expect = 2e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 6518064 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 6518005
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 6518004 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 6517945
Query: 402 tgttcggcgccagc 415
||||||||||||||
Sbjct: 6517944 tgttcggcgccagc 6517931
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 6518274 acaagaccatcgacggccgcggcgcgcaggtgcacatc 6518237
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 206 bits (104), Expect = 2e-050
Identities = 161/180 (89%)
Strand = Plus / Minus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
|||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6517729 ggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgcc 6517670
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
||| ||||| | || ||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 6517669 gcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgta 6517610
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccc 615
||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||||
Sbjct: 6517609 cgccatcggcggcggcatgagccctaccatcctcagccagggcaaccgatacatcgcccc 6517550
Score = 83.8 bits (42), Expect = 2e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 6518064 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 6518005
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 6518004 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 6517945
Query: 402 tgttcggcgccagc 415
||||||||||||||
Sbjct: 6517944 tgttcggcgccagc 6517931
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 6518274 acaagaccatcgacggccgcggcgcgcaggtgcacatc 6518237
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 206 bits (104), Expect = 2e-050
Identities = 161/180 (89%)
Strand = Plus / Minus
Query: 436 ggtgatgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgcc 495
|||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 6399671 ggtgatgcagatcaccgtggcgttcaaccacttcggccgtgggctcgtgcagcggatgcc 6399612
Query: 496 gcgctgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgta 555
||| ||||| | || ||||||||||| || ||||||||||||||||||||| |||||||
Sbjct: 6399611 gcgatgccggtgggggttcttccacgtcgtcaacaacgactacacgcactggctcatgta 6399552
Query: 556 cgccatcggcggcaacatgaaccccaccatcatcagccagggcaaccgcttcatcgcccc 615
||||||||||||| ||||| ||| |||||| |||||||||||||||| | |||||||||
Sbjct: 6399551 cgccatcggcggcggcatgagccctaccatcctcagccagggcaaccgatacatcgcccc 6399492
Score = 83.8 bits (42), Expect = 2e-013
Identities = 111/134 (82%)
Strand = Plus / Minus
Query: 282 acgtgtggatcgaccacgtgtccatgtccagctgctccgacgggctgatcgacgtggtga 341
|||||||| | |||||||| |||||||||| ||| |||||||| |||||||| |||
Sbjct: 6400006 acgtgtgggtggaccacgtctccatgtccatgtgcgaggacgggctcatcgacgtcgtgc 6399947
Query: 342 acgggtcgacggccatcaccgtgtccaacagccacttcaccgaccacgaccacgtgatgc 401
| || ||||||| | ||| | |||||||||||||||||| ||||| || |||| ||||
Sbjct: 6399946 agggctcgacgggggtgaccatctccaacagccacttcaccaaccacaacgacgtcatgc 6399887
Query: 402 tgttcggcgccagc 415
||||||||||||||
Sbjct: 6399886 tgttcggcgccagc 6399873
Score = 52.0 bits (26), Expect = 7e-004
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgcacatc 115
||||||| |||||||| || ||||||||||||||||||
Sbjct: 6400216 acaagaccatcgacggccgcggcgcgcaggtgcacatc 6400179
>gb|CZ444110.1|CZ444110 UCDRdSpm486_3.1 UCD RdSpm Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RdSpm486_3.1, DNA sequence
Length = 439
Score = 113 bits (57), Expect = 2e-022
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 527 aacaacgactacacgcactggatcatgtacgccatcggcggcaacatgaaccccaccatc 586
||||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||
Sbjct: 436 aacaacgactacacgcactggctcatgtacgccatcggcggcggcatgagccctaccatc 377
Query: 587 atcagccagggcaaccgcttcatcgcccc 615
|||||||||||||||| | |||||||||
Sbjct: 376 ctcagccagggcaaccgatacatcgcccc 348
>dbj|AK072583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132G06, full
insert sequence
Length = 2078
Score = 107 bits (54), Expect = 1e-020
Identities = 132/158 (83%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgggctggtgcagcggatgccgcgc 499
|||||| |||| || || |||||||||||||||||||| || || || | ||||| |
Sbjct: 1124 atgcagatcaccgtcgctttcaaccacttcggccgcggcctcgtccaaagaatgcccaga 1183
Query: 500 tgccgctacggcttcttccacgtggtgaacaacgactacacgcactggatcatgtacgcc 559
||||| | || || ||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 1184 tgccgatggggatttttccacgtggtgaacaacgactacacgcactggctcatgtatgcc 1243
Query: 560 atcggcggcaacatgaaccccaccatcatcagccaggg 597
||||| || | || |||||| || ||||||||||||||
Sbjct: 1244 atcggagggagcaagaacccgacgatcatcagccaggg 1281
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 759 acaagacgatcgacgggcggggagcgcaggtgc 791
>ref|NM_196827.1| Oryza sativa (japonica cultivar-group) putative pectate lyase
(OSJNBa0018F16.19), mRNA
Length = 1404
Score = 107 bits (54), Expect = 1e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 990 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 1049
Query: 637 ggtgaccaagcggg 650
|||||| |||||||
Sbjct: 1050 ggtgacgaagcggg 1063
>dbj|AP005708.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0507H07, ***
SEQUENCING IN PROGRESS ***
Length = 101786
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||||||||||||||||||| ||||||| |||||||| || | || |
Sbjct: 35331 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccatcggagggagcaag 35272
Query: 575 aaccccaccatcatcagccaggg 597
||||| || ||||||||||||||
Sbjct: 35271 aacccgacgatcatcagccaggg 35249
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||| ||||||||||||||| | |||||||||||||| || | || |
Sbjct: 31916 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccatcggagggagcaag 31857
Query: 575 aaccccaccatcatcagccagggcaaccg 603
||||| || ||||| |||||||| |||||
Sbjct: 31856 aacccgacgatcattagccaggggaaccg 31828
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 35884 acaagacgatcgacgggcggggagcgcaggtgc 35852
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgg 477
|||||| |||| || || ||||||||||||||||||||
Sbjct: 35519 atgcagatcaccgtcgctttcaaccacttcggccgcgg 35482
>ref|NT_107232.1| Oryza sativa (japonica cultivar-group)
Length = 367211
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||||||||||||||||||| ||||||| |||||||| || | || |
Sbjct: 332639 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccatcggagggagcaag 332698
Query: 575 aaccccaccatcatcagccaggg 597
||||| || ||||||||||||||
Sbjct: 332699 aacccgacgatcatcagccaggg 332721
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||| ||||||||||||||| | |||||||||||||| || | || |
Sbjct: 336054 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccatcggagggagcaag 336113
Query: 575 aaccccaccatcatcagccagggcaaccg 603
||||| || ||||| |||||||| |||||
Sbjct: 336114 aacccgacgatcattagccaggggaaccg 336142
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 332086 acaagacgatcgacgggcggggagcgcaggtgc 332118
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgg 477
|||||| |||| || || ||||||||||||||||||||
Sbjct: 332451 atgcagatcaccgtcgctttcaaccacttcggccgcgg 332488
>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0498C03
Length = 146394
Score = 101 bits (51), Expect = 8e-019
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||||||||||||||||||| ||||||| |||||||| || | || |
Sbjct: 111822 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccatcggagggagcaag 111881
Query: 575 aaccccaccatcatcagccaggg 597
||||| || ||||||||||||||
Sbjct: 111882 aacccgacgatcatcagccaggg 111904
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||| ||||||||||||||| | |||||||||||||| || | || |
Sbjct: 115237 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccatcggagggagcaag 115296
Query: 575 aaccccaccatcatcagccagggcaaccg 603
||||| || ||||| |||||||| |||||
Sbjct: 115297 aacccgacgatcattagccaggggaaccg 115325
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 111269 acaagacgatcgacgggcggggagcgcaggtgc 111301
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgg 477
|||||| |||| || || ||||||||||||||||||||
Sbjct: 111634 atgcagatcaccgtcgctttcaaccacttcggccgcgg 111671
>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete
sequence
Length = 117157
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 112428 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 112487
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 112488 ggtaagcaagcg 112499
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
complete sequence
Length = 179157
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 124537 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 124478
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 124477 ggtaagcaagcg 124466
>gb|AACV01021719.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg021719, whole
genome shotgun sequence
Length = 27956
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 11311 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 11252
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 11251 ggtaagcaagcg 11240
>ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 4809259
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 2977279 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 2977220
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 2977219 ggtaagcaagcg 2977208
>gb|CH401254.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000091 genomic
scaffold, whole genome shotgun sequence
Length = 10615099
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 4189207 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 4189148
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 4189147 ggtaagcaagcg 4189136
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 15055001 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 15054942
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 15054941 ggtaagcaagcg 15054930
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 16245648 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 16245589
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 16245588 ggtaagcaagcg 16245577
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 95.6 bits (48), Expect = 5e-017
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 577 ccccaccatcatcagccagggcaaccgcttcatcgcccccgacgaccccaacgccaagga 636
||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 16253889 ccccaccatcaacagccagggcaaccgctacatcgcccccgccgatcccaacgccaagga 16253830
Query: 637 ggtgaccaagcg 648
||| | ||||||
Sbjct: 16253829 ggtaagcaagcg 16253818
>gb|AACV01014424.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014424,
whole genome shotgun sequence
Length = 13752
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||||||||||||||||||| ||||||| |||||||| || | || |
Sbjct: 45 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccatcggagggagcaag 104
Query: 575 aaccccaccatcatcagccaggg 597
|| || || ||||||||||||||
Sbjct: 105 aaaccgacgatcatcagccaggg 127
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||| ||||||||||||||| | |||||||||||||| || | || |
Sbjct: 3460 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccatcggagggagcaag 3519
Query: 575 aaccccaccatcatcagccagggcaaccg 603
||||| || ||||| |||||||| |||||
Sbjct: 3520 aacccgacgatcattagccaggggaaccg 3548
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 93.7 bits (47), Expect = 2e-016
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||||||||||||||||||| ||||||| |||||||| || | || |
Sbjct: 3823586 ttccacgtggtgaacaacgactacacgcactggctcatgtatgccatcggagggagcaag 3823645
Query: 575 aaccccaccatcatcagccaggg 597
|| || || ||||||||||||||
Sbjct: 3823646 aaaccgacgatcatcagccaggg 3823668
Score = 89.7 bits (45), Expect = 3e-015
Identities = 78/89 (87%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactggatcatgtacgccatcggcggcaacatg 574
||||||||||||||||| ||||||||||||||| | |||||||||||||| || | || |
Sbjct: 3827001 ttccacgtggtgaacaatgactacacgcactggctgatgtacgccatcggagggagcaag 3827060
Query: 575 aaccccaccatcatcagccagggcaaccg 603
||||| || ||||| |||||||| |||||
Sbjct: 3827061 aacccgacgatcattagccaggggaaccg 3827089
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 3822099 acaagacgatcgacgggcggggagcgcaggtgc 3822131
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgg 477
|||||| |||| || || ||||||||||||||||||||
Sbjct: 3822464 atgcagatcaccgtcgctttcaaccacttcggccgcgg 3822501
>gb|AZ135244.1|AZ135244 OSJNBb0115A18r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0115A18r, DNA
sequence
Length = 589
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 263 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 322
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 323 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 368
>gb|AACV01008547.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008547, whole
genome shotgun sequence
Length = 35849
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 33070 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 33129
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 33130 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 33175
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||| ||||||||||| |||||||| ||||||
Sbjct: 34126 cttccatgtggtgaacaatgactacacccactgg 34159
>ref|XM_471234.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1419
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 567 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 626
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 627 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 672
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||| ||||||||||| |||||||| ||||||
Sbjct: 1074 cttccatgtggtgaacaatgactacacccactgg 1107
>ref|NT_107194.1| Oryza sativa (japonica cultivar-group)
Length = 2696338
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 2470728 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 2470787
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 2470788 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 2470833
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||| ||||||||||| |||||||| ||||||
Sbjct: 2471784 cttccatgtggtgaacaatgactacacccactgg 2471817
>gb|CH401184.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000021
genomic scaffold, whole genome shotgun sequence
Length = 2817894
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 668841 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 668900
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 668901 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 668946
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||| ||||||||||| |||||||| ||||||
Sbjct: 669897 cttccatgtggtgaacaatgactacacccactgg 669930
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 2154746 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 2154805
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 2154806 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 2154851
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 344 gggtcgacggccatcaccgtgtccaacagccacttc 379
||||||||||| ||||||||||| |||||| |||||
Sbjct: 26942081 gggtcgacggcgatcaccgtgtcgaacagctacttc 26942046
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||| ||||||||||| |||||||| ||||||
Sbjct: 2155802 cttccatgtggtgaacaatgactacacccactgg 2155835
>emb|AL731627.3|OSJN00272 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095E20,
complete sequence
Length = 138572
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 86780 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 86839
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 86840 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 86885
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||| ||||||||||| |||||||| ||||||
Sbjct: 87836 cttccatgtggtgaacaatgactacacccactgg 87869
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 60.0 bits (30), Expect = 3e-006
Identities = 87/106 (82%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 2470878 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 2470937
Query: 70 gaaccacaacaagacgatcgacgggcggggcgcgcaggtgcacatc 115
|||| | |||||| |||||||| || ||||| | |||||||||
Sbjct: 2470938 gaacagcttcaagaccatcgacggccgtggcgccaacgtgcacatc 2470983
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 344 gggtcgacggccatcaccgtgtccaacagccacttc 379
||||||||||| ||||||||||| |||||| |||||
Sbjct: 30024963 gggtcgacggcgatcaccgtgtcgaacagctacttc 30024928
Score = 44.1 bits (22), Expect = 0.17
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 514 cttccacgtggtgaacaacgactacacgcactgg 547
|||||| ||||||||||| |||||||| ||||||
Sbjct: 2471934 cttccatgtggtgaacaatgactacacccactgg 2471967
>gb|AACV01014423.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014423,
whole genome shotgun sequence
Length = 8187
Score = 58.0 bits (29), Expect = 1e-005
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 78 acaagacgatcgacgggcggggcgcgcaggtgc 110
|||||||||||||||||||||| ||||||||||
Sbjct: 443 acaagacgatcgacgggcggggagcgcaggtgc 411
Score = 44.1 bits (22), Expect = 0.17
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 440 atgcaggtcacggtggcgttcaaccacttcggccgcgg 477
|||||| |||| || || ||||||||||||||||||||
Sbjct: 78 atgcagatcaccgtcgctttcaaccacttcggccgcgg 41
>gb|AU070353.1|AU070353 AU070353 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S12346_8A, mRNA sequence
Length = 562
Score = 56.0 bits (28), Expect = 4e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 10 gccgctgtggatcgtgttcgcgcgcgacatggtgatcgagctgcggcaggagctgatcgt 69
||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| |
Sbjct: 93 gccgctgtggatcgtcttcaagcgcgacatggtgatcacgctcaagcaggagctgatcat 152
Query: 70 gaac 73
||||
Sbjct: 153 gaac 156
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
chromosome 11 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 125593
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 344 gggtcgacggccatcaccgtgtccaacagccacttc 379
||||||||||| ||||||||||| |||||| |||||
Sbjct: 23798 gggtcgacggcgatcaccgtgtcgaacagctacttc 23763
>ref|NT_107134.1| Oryza sativa (japonica cultivar-group)
Length = 568590
Score = 48.1 bits (24), Expect = 0.011
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 344 gggtcgacggccatcaccgtgtccaacagccacttc 379
||||||||||| ||||||||||| |||||| |||||
Sbjct: 198659 gggtcgacggcgatcaccgtgtcgaacagctacttc 198624
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,588,661
Number of Sequences: 438736
Number of extensions: 1588661
Number of successful extensions: 23160
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21689
Number of HSP's gapped (non-prelim): 1406
length of query: 1155
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1134
effective length of database: 2,791,206,460
effective search space: 3165228125640
effective search space used: 3165228125640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)