BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440716.2.1
(774 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB659466.1|CB659466 OSJNEc16H18.r OSJNEc Oryza sativa (j... 72 5e-010
gb|CB666604.1|CB666604 OSJNEd13J04.r OSJNEd Oryza sativa (j... 72 5e-010
dbj|AK109806.1| Oryza sativa (japonica cultivar-group) cDNA... 72 5e-010
gb|AACV01010151.1| Oryza sativa (japonica cultivar-group) c... 72 5e-010
ref|XM_473231.1| Oryza sativa (japonica cultivar-group), p... 72 5e-010
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 72 5e-010
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 72 5e-010
emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromoso... 72 5e-010
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 72 5e-010
dbj|AK063324.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
dbj|AP004727.2| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
dbj|AP003488.3| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|AACV01013318.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
ref|NT_079873.2| Oryza sativa (japonica cultivar-group) 64 1e-007
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 64 1e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 64 1e-007
gb|CB659047.1|CB659047 OSJNEc15K11.f OSJNEc Oryza sativa (j... 58 7e-006
dbj|AP004340.5| Oryza sativa (japonica cultivar-group) geno... 58 7e-006
gb|AACV01015535.1| Oryza sativa (japonica cultivar-group) c... 58 7e-006
ref|NM_186788.1| Oryza sativa (japonica cultivar-group), mRNA 58 7e-006
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 58 7e-006
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 58 7e-006
gb|CB659465.1|CB659465 OSJNEc16H18.f OSJNEc Oryza sativa (j... 52 5e-004
gb|CB647449.1|CB647449 OSJNEb10G04.r OSJNEb Oryza sativa (j... 50 0.002
gb|CB683255.1|CB683255 OSJNEf11G13.r OSJNEf Oryza sativa (j... 50 0.002
ref|NT_107075.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AACV01020393.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
dbj|AP006173.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|CB637106.1|CB637106 OSJNEa03E20.r OSJNEa Oryza sativa (j... 48 0.007
gb|CB645026.1|CB645026 OSJNEb06H20.r OSJNEb Oryza sativa (j... 48 0.007
dbj|AP004400.1| Oryza sativa (japonica cultivar-group) chro... 48 0.007
dbj|AK064324.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK065987.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK099344.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK101518.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK105785.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK105912.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK106005.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
dbj|AK119544.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.007
gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-grou... 48 0.007
dbj|AP005186.4| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|AC135568.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|AACV01016313.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01016342.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01021651.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|AACV01023276.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
ref|NM_196703.1| Oryza sativa (japonica cultivar-group) put... 48 0.007
ref|NT_080067.1| Oryza sativa (japonica cultivar-group) chr... 48 0.007
ref|XM_478277.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
ref|XM_478278.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
ref|XM_478346.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.007
ref|XM_506356.1| PREDICTED Oryza sativa (japonica cultivar-... 48 0.007
ref|XM_506362.1| PREDICTED Oryza sativa (japonica cultivar-... 48 0.007
ref|XM_506357.2| PREDICTED Oryza sativa (japonica cultivar-... 48 0.007
ref|XM_507364.1| PREDICTED Oryza sativa (japonica cultivar-... 48 0.007
dbj|AP005185.4| Oryza sativa (japonica cultivar-group) geno... 48 0.007
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 48 0.007
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CH401254.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 48 0.007
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|AQ688115.1|AQ688115 nbxb0077A12r CUGI Rice BAC Library O... 46 0.028
gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 ... 46 0.028
gb|AACV01008189.1| Oryza sativa (japonica cultivar-group) c... 46 0.028
ref|NM_185146.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.028
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 46 0.028
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.028
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.028
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.028
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.028
gb|AQ866659.1|AQ866659 nbeb0028P11f CUGI Rice BAC Library (... 44 0.11
gb|AZ047464.1|AZ047464 nbeb0094M23f CUGI Rice BAC Library (... 44 0.11
gb|AZ131490.1|AZ131490 OSJNBb0111A07f CUGI Rice BAC Library... 44 0.11
gb|C72832.1|C72832 C72832 Rice panicle at flowering stage O... 44 0.11
gb|AU182357.1|AU182357 AU182357 Rice panicle at flowering s... 44 0.11
gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 ... 44 0.11
dbj|AP004192.3| Oryza sativa (japonica cultivar-group) geno... 44 0.11
gb|AC144738.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|AACV01004995.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01008121.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01011010.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
ref|XM_466915.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|XM_470006.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 44 0.11
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.11
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 44 0.11
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP004633.1| Oryza sativa (japonica cultivar-group) chro... 42 0.44
gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 ... 42 0.44
gb|AACV01006778.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
gb|AACV01013568.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
dbj|AP003540.2| Oryza sativa (japonica cultivar-group) geno... 42 0.44
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 42 0.44
gb|CH401210.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
>gb|CB659466.1|CB659466 OSJNEc16H18.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16H18 3', mRNA sequence
Length = 738
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 357 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 416
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 417 cccgagcacgtcgtcctgcggcgcccag 444
>gb|CB666604.1|CB666604 OSJNEd13J04.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd13J04 3', mRNA sequence
Length = 829
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 523 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 582
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 583 cccgagcacgtcgtcctgcggcgcccag 610
>dbj|AK109806.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F12, full
insert sequence
Length = 1692
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 1299 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 1240
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 1239 cccgagcacgtcgtcctgcggcgcccag 1212
>gb|AACV01010151.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010151, whole
genome shotgun sequence
Length = 32707
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 12678 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 12619
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 12618 cccgagcacgtcgtcctgcggcgcccag 12591
>ref|XM_473231.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1608
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 1302 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 1243
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 1242 cccgagcacgtcgtcctgcggcgcccag 1215
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 10989 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 11048
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 11049 cccgagcacgtcgtcctgcggcgcccag 11076
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 4080041 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 4080100
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 4080101 cccgagcacgtcgtcctgcggcgcccag 4080128
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 23224140 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 23224199
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 23224200 cccgagcacgtcgtcctgcggcgcccag 23224227
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10,
complete sequence
Length = 141545
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 10989 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 11048
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 11049 cccgagcacgtcgtcctgcggcgcccag 11076
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 71.9 bits (36), Expect = 5e-010
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 582 gatggcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtg 641
||||||||| |||||||||||||| ||| ||| |||||| | | |||||||||| |||
Sbjct: 26234412 gatggcctccacggtggagttccagccgcagtgcgtgaggtagcacccgacggccgcgtg 26234471
Query: 642 cgcgagcacctcctcctgcggcgcccag 669
| ||||||| || |||||||||||||||
Sbjct: 26234472 cccgagcacgtcgtcctgcggcgcccag 26234499
>dbj|AK063324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H05, full
insert sequence
Length = 1808
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 1204 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 1145
Query: 658 tgcg 661
||||
Sbjct: 1144 tgcg 1141
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0516A04
Length = 145107
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 11846 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 11787
Query: 658 tgcg 661
||||
Sbjct: 11786 tgcg 11783
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0436F11
Length = 165550
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 131589 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 131530
Query: 658 tgcg 661
||||
Sbjct: 131529 tgcg 131526
>gb|AACV01013318.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013318, whole
genome shotgun sequence
Length = 42824
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 40165 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 40224
Query: 658 tgcg 661
||||
Sbjct: 40225 tgcg 40228
>ref|NT_079873.2| Oryza sativa (japonica cultivar-group)
Length = 5116111
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 1909350 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 1909291
Query: 658 tgcg 661
||||
Sbjct: 1909290 tgcg 1909287
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 6139954 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 6139895
Query: 658 tgcg 661
||||
Sbjct: 6139894 tgcg 6139891
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 6139954 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 6139895
Query: 658 tgcg 661
||||
Sbjct: 6139894 tgcg 6139891
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 396 catcctctccttgatctcctc 416
|||||||||||||||||||||
Sbjct: 9688040 catcctctccttgatctcctc 9688060
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 598 gagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcctcc 657
|||||||| ||| |||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 6217770 gagttccacccgctgtgcgtgaggaacccgccgacggcgcggtgccggagcacctcctcc 6217711
Query: 658 tgcg 661
||||
Sbjct: 6217710 tgcg 6217707
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 396 catcctctccttgatctcctc 416
|||||||||||||||||||||
Sbjct: 9702877 catcctctccttgatctcctc 9702897
>gb|CB659047.1|CB659047 OSJNEc15K11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15K11 5', mRNA sequence
Length = 776
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 701 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 661
>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0523A04
Length = 149049
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 121095 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 121055
>gb|AACV01015535.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015535, whole
genome shotgun sequence
Length = 39781
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 11149 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 11109
>ref|NM_186788.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1440
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 1100 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 1060
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 7828169 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 7828129
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058 genomic
scaffold, whole genome shotgun sequence
Length = 3500188
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 1695986 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 1695946
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 7749611 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 7749571
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| |||||| | ||| ||||| ||||| | ||||||||| | |||||
Sbjct: 18353431 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgaggatctcct 18353490
Query: 656 cctgcggcgccc 667
|||||||||||
Sbjct: 18353491 tctgcggcgccc 18353502
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 17945810 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 17945767
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 58.0 bits (29), Expect = 7e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 634 gccgggtgcgcgagcacctcctcctgcggcgcccaggtgac 674
||||||||||| || ||||||||||||||||||||| ||||
Sbjct: 7872097 gccgggtgcgccaggacctcctcctgcggcgcccagctgac 7872057
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| |||||| | ||| ||||| ||||| | ||||||||| | |||||
Sbjct: 19401427 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgaggatctcct 19401486
Query: 656 cctgcggcgccc 667
|||||||||||
Sbjct: 19401487 tctgcggcgccc 19401498
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 18985498 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 18985455
>gb|CB659465.1|CB659465 OSJNEc16H18.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16H18 5', mRNA sequence
Length = 764
Score = 52.0 bits (26), Expect = 5e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 628 ccgacggccgggtgcgcgagcacctcctcctgcggcgcccag 669
|||||||||| |||| ||||||| || |||||||||||||||
Sbjct: 742 ccgacggccgcgtgcccgagcacgtcgtcctgcggcgcccag 701
>gb|CB647449.1|CB647449 OSJNEb10G04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10G04 3', mRNA sequence
Length = 772
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 465 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 524
Query: 646 agcacctcc 654
|||||||||
Sbjct: 525 agcacctcc 533
>gb|CB683255.1|CB683255 OSJNEf11G13.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11G13 3', mRNA sequence
Length = 772
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 464 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 523
Query: 646 agcacctcc 654
|||||||||
Sbjct: 524 agcacctcc 532
>ref|NT_107075.1| Oryza sativa (japonica cultivar-group)
Length = 389359
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 330029 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 329970
Query: 646 agcacctcc 654
|||||||||
Sbjct: 329969 agcacctcc 329961
>gb|AACV01020393.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020393, whole
genome shotgun sequence
Length = 17450
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 4238 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 4179
Query: 646 agcacctcc 654
|||||||||
Sbjct: 4178 agcacctcc 4170
>dbj|AP006173.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0217C03
Length = 58309
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 27633 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 27574
Query: 646 agcacctcc 654
|||||||||
Sbjct: 27573 agcacctcc 27565
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 9425360 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 9425301
Query: 646 agcacctcc 654
|||||||||
Sbjct: 9425300 agcacctcc 9425292
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 18899171 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 18899112
Query: 646 agcacctcc 654
|||||||||
Sbjct: 18899111 agcacctcc 18899103
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 586 gcctcgacggtggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcg 645
|||||||||||||||||||| ||| ||| || | ||| | ||| ||||| | |||||||
Sbjct: 19920547 gcctcgacggtggagttccagccgcagtgcgtcacgaagcagcccacggcggcgtgcgcg 19920488
Query: 646 agcacctcc 654
|||||||||
Sbjct: 19920487 agcacctcc 19920479
>gb|CB637106.1|CB637106 OSJNEa03E20.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa03E20 3', mRNA sequence
Length = 608
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 531 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 574
>gb|CB645026.1|CB645026 OSJNEb06H20.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb06H20 3', mRNA sequence
Length = 809
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| |||||| | ||| ||||| ||||| | ||||||||| | |||||
Sbjct: 527 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgaggatctcct 586
Query: 656 cctgcggcgccc 667
|||||||||||
Sbjct: 587 tctgcggcgccc 598
>dbj|AP004400.1| Oryza sativa (japonica cultivar-group) chromosome 7 clone P0506H09,
*** SEQUENCING IN PROGRESS ***
Length = 146154
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 1497 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 1540
>dbj|AK064324.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-F04, full
insert sequence
Length = 1747
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 494 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 537
>dbj|AK065987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044P16, full
insert sequence
Length = 1599
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| |||||| | ||| ||||| ||||| | ||||||||| | |||||
Sbjct: 1119 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgaggatctcct 1060
Query: 656 cctgcggcgccc 667
|||||||||||
Sbjct: 1059 tctgcggcgccc 1048
>dbj|AK099344.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028A15, full
insert sequence
Length = 1640
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 392 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 435
>dbj|AK101518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046I03, full
insert sequence
Length = 1790
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 449 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 492
>dbj|AK105785.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G10, full
insert sequence
Length = 1709
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 1187 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 1144
>dbj|AK105912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G12, full
insert sequence
Length = 1645
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| |||||| | ||| ||||| ||||| | ||||||||| | |||||
Sbjct: 1165 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgaggatctcct 1106
Query: 656 cctgcggcgccc 667
|||||||||||
Sbjct: 1105 tctgcggcgccc 1094
>dbj|AK106005.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A05, full
insert sequence
Length = 1686
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 1157 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 1114
>dbj|AK119544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H01, full
insert sequence
Length = 1645
Score = 48.1 bits (24), Expect = 0.007
Identities = 60/72 (83%)
Strand = Plus / Minus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| |||||| | ||| ||||| ||||| | ||||||||| | |||||
Sbjct: 1165 tggagttccacccgcagtgggtcacgaacccgcccacggcggcgtgcgcgaggatctcct 1106
Query: 656 cctgcggcgccc 667
|||||||||||
Sbjct: 1105 tctgcggcgccc 1094
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18,
complete sequence
Length = 144720
Score = 48.1 bits (24), Expect = 0.007
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 596 tggagttccaaccgttgtgggtgaggaaaccgccgacggccgggtgcgcgagcacctcct 655
|||||||||| ||| ||| |||||||| || ||||||| ||||| ||||||||||||
Sbjct: 97583 tggagttccagccgcagtgcgtgaggaaggcggcgacggcggggtgggcgagcacctcca 97642
Query: 656 cctg 659
||||
Sbjct: 97643 cctg 97646
>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0430F03
Length = 183095
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 87483 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 87440
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08,
complete sequence
Length = 165440
Score = 48.1 bits (24), Expect = 0.007
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 341 cgtcgacgtcgacgccgatgccgatgcc 368
|||||||||||||| |||||||||||||
Sbjct: 156931 cgtcgacgtcgacgtcgatgccgatgcc 156958
>gb|AACV01016313.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016313, whole
genome shotgun sequence
Length = 27006
Score = 48.1 bits (24), Expect = 0.007
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 625 ccgccgacggccgggtgcgcgagcacctcctcctgcggcgccca 668
||||||| ||||||||| ||||| | ||||| ||||||||||||
Sbjct: 5842 ccgccgatggccgggtgggcgaggatctccttctgcggcgccca 5799
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,132,046
Number of Sequences: 438736
Number of extensions: 1132046
Number of successful extensions: 9596
Number of sequences better than 0.5: 112
Number of HSP's better than 0.5 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8739
Number of HSP's gapped (non-prelim): 857
length of query: 774
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 753
effective length of database: 2,791,206,460
effective search space: 2101778464380
effective search space used: 2101778464380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)