BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440450.2.1
(1291 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK073723.1| Oryza sativa (japonica cultivar-group) cDNA... 131 1e-027
ref|XM_466911.1| Oryza sativa (japonica cultivar-group), mRNA 131 1e-027
dbj|AP004192.3| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AACV01004992.1| Oryza sativa (japonica cultivar-group) c... 66 5e-008
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 66 5e-008
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 66 5e-008
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 66 5e-008
gb|AU090513.1|AU090513 AU090513 Rice root Oryza sativa (jap... 60 3e-006
>dbj|AK073723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061H13, full
insert sequence
Length = 1322
Score = 131 bits (66), Expect = 1e-027
Identities = 312/394 (79%)
Strand = Plus / Minus
Query: 659 agctccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtc 718
||||||| ||||| |||| |||||| ||||||||| |||| ||||||||||| ||
Sbjct: 670 agctccaagtgcacatgaacgcagtgaagaaagtgatgtgttacatcattgaagttggtt 611
Query: 719 acacgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgcca 778
| ||||| ||||| || ||||| || || ||||| |||||||||||||| | ||| |||
Sbjct: 610 atacgcctcacagagtaagcaaccacctgacgcttcccttgaaaaccttttagaccacca 551
Query: 779 atgactatgacatagttctcgttattagcatcagccatctccttagcatcggaagcctca 838
|||| || ||||||| | || | | |||||||||||||||| ||| | ||
Sbjct: 550 ttgacaataacatagtcaccattctgaatgtcagccatctccttagtatcagtgctatcg 491
Query: 839 ttttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatct 898
|||||||||||||||||| || | |||| ||||||||||||||||||||| |||||
Sbjct: 490 ttttcccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatcc 431
Query: 899 gtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctcaacg 958
|| || || |||| |||| || ||||||||| |||||||||| ||| |||||||| | |
Sbjct: 430 gtaacccgatcaagcttatttaacatgcgtcctacaagcctaaccgtggacacctccatg 371
Query: 959 ccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctgtttc 1018
|| |||| || ||||| ||| |||| || |||| || | |||||||||| |||| |||
Sbjct: 370 ccattgacagcaaaattcgacttgtcgtcgttggtctgggacgcgtccatgatctgcttc 311
Query: 1019 acggtgagcgggagcagcgtctgcgcgctccgac 1052
||||||||||||||||||| ||| ||| ||||||
Sbjct: 310 acggtgagcgggagcagcgcctgggcgttccgac 277
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 857 tgggtcatgaaaaacattcaagaccaagt 829
>ref|XM_466911.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1322
Score = 131 bits (66), Expect = 1e-027
Identities = 312/394 (79%)
Strand = Plus / Minus
Query: 659 agctccatatgcacctgaatgcagtgcagaaagtgacaggttatttcattgaagtttgtc 718
||||||| ||||| |||| |||||| ||||||||| |||| ||||||||||| ||
Sbjct: 670 agctccaagtgcacatgaacgcagtgaagaaagtgatgtgttacatcattgaagttggtt 611
Query: 719 acacgccgcacagcataggcaactacatggcgctttccttgaaaacctttcaaaccgcca 778
| ||||| ||||| || ||||| || || ||||| |||||||||||||| | ||| |||
Sbjct: 610 atacgcctcacagagtaagcaaccacctgacgcttcccttgaaaaccttttagaccacca 551
Query: 779 atgactatgacatagttctcgttattagcatcagccatctccttagcatcggaagcctca 838
|||| || ||||||| | || | | |||||||||||||||| ||| | ||
Sbjct: 550 ttgacaataacatagtcaccattctgaatgtcagccatctccttagtatcagtgctatcg 491
Query: 839 ttttcccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatct 898
|||||||||||||||||| || | |||| ||||||||||||||||||||| |||||
Sbjct: 490 ttttcccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatcc 431
Query: 899 gtgacacgctcaaccttacctagcatgcgtccaacaagcctaatcgtagacacctcaacg 958
|| || || |||| |||| || ||||||||| |||||||||| ||| |||||||| | |
Sbjct: 430 gtaacccgatcaagcttatttaacatgcgtcctacaagcctaaccgtggacacctccatg 371
Query: 959 ccgttgatggcgaaattagacctgtcaccgctggtttgcgccgcgtccatggtctgtttc 1018
|| |||| || ||||| ||| |||| || |||| || | |||||||||| |||| |||
Sbjct: 370 ccattgacagcaaaattcgacttgtcgtcgttggtctgggacgcgtccatgatctgcttc 311
Query: 1019 acggtgagcgggagcagcgtctgcgcgctccgac 1052
||||||||||||||||||| ||| ||| ||||||
Sbjct: 310 acggtgagcgggagcagcgcctgggcgttccgac 277
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 857 tgggtcatgaaaaacattcaagaccaagt 829
>dbj|AP004192.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1643_A10
Length = 130037
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1000 cgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgac 1052
|||||||||| |||| |||||||||||||||||||||| ||| ||| ||||||
Sbjct: 82088 cgcgtccatgatctgcttcacggtgagcgggagcagcgcctgggcgttccgac 82140
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 844 ccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtgac 903
||||||||||||| || | |||| ||||||||||||||||||||| ||||| || ||
Sbjct: 81508 ccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatccgtaac 81567
Query: 904 acgctcaaccttacctagcatgcgtccaacaagcctaa 941
|| |||| |||| || ||||||||| ||||||||||
Sbjct: 81568 ccgatcaagcttatttaacatgcgtcctacaagcctaa 81605
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 79813 tgggtcatgaaaaacattcaagaccaagt 79841
>gb|AACV01004992.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004992, whole
genome shotgun sequence
Length = 15905
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1000 cgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgac 1052
|||||||||| |||| |||||||||||||||||||||| ||| ||| ||||||
Sbjct: 10728 cgcgtccatgatctgcttcacggtgagcgggagcagcgcctgggcgttccgac 10780
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 844 ccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtgac 903
||||||||||||| || | |||| ||||||||||||||||||||| ||||| || ||
Sbjct: 10148 ccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatccgtaac 10207
Query: 904 acgctcaaccttacctagcatgcgtccaacaagcctaa 941
|| |||| |||| || ||||||||| ||||||||||
Sbjct: 10208 ccgatcaagcttatttaacatgcgtcctacaagcctaa 10245
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 8453 tgggtcatgaaaaacattcaagaccaagt 8481
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1000 cgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgac 1052
|||||||||| |||| |||||||||||||||||||||| ||| ||| ||||||
Sbjct: 591425 cgcgtccatgatctgcttcacggtgagcgggagcagcgcctgggcgttccgac 591477
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 844 ccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtgac 903
||||||||||||| || | |||| ||||||||||||||||||||| ||||| || ||
Sbjct: 590845 ccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatccgtaac 590904
Query: 904 acgctcaaccttacctagcatgcgtccaacaagcctaa 941
|| |||| |||| || ||||||||| ||||||||||
Sbjct: 590905 ccgatcaagcttatttaacatgcgtcctacaagcctaa 590942
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 589150 tgggtcatgaaaaacattcaagaccaagt 589178
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1000 cgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgac 1052
|||||||||| |||| |||||||||||||||||||||| ||| ||| ||||||
Sbjct: 11763301 cgcgtccatgatctgcttcacggtgagcgggagcagcgcctgggcgttccgac 11763353
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 844 ccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtgac 903
||||||||||||| || | |||| ||||||||||||||||||||| ||||| || ||
Sbjct: 11762721 ccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatccgtaac 11762780
Query: 904 acgctcaaccttacctagcatgcgtccaacaagcctaa 941
|| |||| |||| || ||||||||| ||||||||||
Sbjct: 11762781 ccgatcaagcttatttaacatgcgtcctacaagcctaa 11762818
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 11761026 tgggtcatgaaaaacattcaagaccaagt 11761054
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1000 cgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgac 1052
|||||||||| |||| |||||||||||||||||||||| ||| ||| ||||||
Sbjct: 25216365 cgcgtccatgatctgcttcacggtgagcgggagcagcgcctgggcgttccgac 25216417
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 844 ccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtgac 903
||||||||||||| || | |||| ||||||||||||||||||||| ||||| || ||
Sbjct: 25215785 ccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatccgtaac 25215844
Query: 904 acgctcaaccttacctagcatgcgtccaacaagcctaa 941
|| |||| |||| || ||||||||| ||||||||||
Sbjct: 25215845 ccgatcaagcttatttaacatgcgtcctacaagcctaa 25215882
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 25214090 tgggtcatgaaaaacattcaagaccaagt 25214118
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 65.9 bits (33), Expect = 5e-008
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1000 cgcgtccatggtctgtttcacggtgagcgggagcagcgtctgcgcgctccgac 1052
|||||||||| |||| |||||||||||||||||||||| ||| ||| ||||||
Sbjct: 25426426 cgcgtccatgatctgcttcacggtgagcgggagcagcgcctgggcgttccgac 25426478
Score = 60.0 bits (30), Expect = 3e-006
Identities = 81/98 (82%)
Strand = Plus / Plus
Query: 844 ccagcgattcacatctatcttgccagtaccatcatcaagagtgaatacaacatctgtgac 903
||||||||||||| || | |||| ||||||||||||||||||||| ||||| || ||
Sbjct: 25425846 ccagcgattcacaggtaccctgcctgtaccatcatcaagagtgaatgatacatccgtaac 25425905
Query: 904 acgctcaaccttacctagcatgcgtccaacaagcctaa 941
|| |||| |||| || ||||||||| ||||||||||
Sbjct: 25425906 ccgatcaagcttatttaacatgcgtcctacaagcctaa 25425943
Score = 50.1 bits (25), Expect = 0.003
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 532 tgggtcatgaaaaacactcaagaccaagt 560
|||||||||||||||| ||||||||||||
Sbjct: 25424151 tgggtcatgaaaaacattcaagaccaagt 25424179
>gb|AU090513.1|AU090513 AU090513 Rice root Oryza sativa (japonica cultivar-group) cDNA clone
R3913, mRNA sequence
Length = 421
Score = 60.0 bits (30), Expect = 3e-006
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1000 cgcgtccatggtctgtttcacggtgagcgggagcagcg 1037
|||||||||| |||| ||||||||||||||||||||||
Sbjct: 239 cgcgtccatgatctgcttcacggtgagcgggagcagcg 202
Score = 52.0 bits (26), Expect = 8e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 862 cttgccagtaccatcatcaagagtgaatacaacatctgtgacacgctcaaccttacctag 921
|||||| |||||||||||||||||| || |||||| | || || |||| |||| ||
Sbjct: 375 cttgcctntaccatcatcaagagtgattaaaacatcgttaacccgatcaagcttatttaa 316
Query: 922 catgcgtccaacaagcctaatcgtagacacctc 954
||||||||| | |||||||| ||| ||||||||
Sbjct: 315 catgcgtcctaaaagcctaaccgtggacacctc 283
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,588,786
Number of Sequences: 438736
Number of extensions: 1588786
Number of successful extensions: 8401
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8292
Number of HSP's gapped (non-prelim): 107
length of query: 1291
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1270
effective length of database: 2,791,206,460
effective search space: 3544832204200
effective search space used: 3544832204200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)