BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP005458.3| Oryza sativa (japonica cultivar-group) geno... 460 e-127
gb|AACV01014361.1| Oryza sativa (japonica cultivar-group) c... 460 e-127
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 460 e-127
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 460 e-127
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 460 e-127
dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA... 149 2e-033
ref|NT_107109.1| Oryza sativa (japonica cultivar-group) gen... 149 2e-033
dbj|AP005471.2| Oryza sativa (japonica cultivar-group) geno... 149 2e-033
gb|AACV01014367.1| Oryza sativa (japonica cultivar-group) c... 149 2e-033
dbj|AP005422.3| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
gb|AACV01019784.1| Oryza sativa (japonica cultivar-group) c... 100 2e-018
ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA 100 2e-018
ref|NT_107082.1| Oryza sativa (japonica cultivar-group) 100 2e-018
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 100 2e-018
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 100 2e-018
dbj|AK110881.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
gb|AACV01020364.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromo... 86 3e-014
gb|AU033284.1|AU033284 AU033284 Rice shoot Oryza sativa (ja... 74 1e-010
dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC O... 54 9e-005
emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC O... 54 9e-005
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|AACV01022227.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
gb|AACV01023843.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|AC137931.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
gb|AC120886.2| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
ref|NT_107132.1| Oryza sativa (japonica cultivar-group) 44 0.088
gb|AACV01006417.1| Oryza sativa (japonica cultivar-group) c... 44 0.088
gb|AACV01010981.1| Oryza sativa (japonica cultivar-group) c... 44 0.088
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 44 0.088
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.088
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.088
gb|CB684513.1|CB684513 OSJNEf14B18.f OSJNEf Oryza sativa (j... 42 0.35
dbj|AK111566.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.35
dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.35
dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.35
gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbar... 42 0.35
gb|AACV01006202.1| Oryza sativa (japonica cultivar-group) c... 42 0.35
ref|NT_107191.1| Oryza sativa (japonica cultivar-group) 42 0.35
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0567G03
Length = 196834
Score = 460 bits (232), Expect = e-127
Identities = 396/451 (87%)
Strand = Plus / Minus
Query: 113 cgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgttgggcaccttgg 172
|||||||||||||||||||||| | |||||| ||||| || ||| | ||||| | || |
Sbjct: 107364 cgccggccatgagcgcggtggcggtggcgccgcaggagacggccgccttggggagctcgc 107305
Query: 173 cgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcggctcga 232
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 107304 tgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggaggtgcggctcga 107245
Query: 233 tatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgtccacc 292
| ||||||||||| |||||||| || |||||||||||||||||||||| | ||||||||
Sbjct: 107244 tgtggcagtggaacgcccacaccccggggttgtccgccacgaaccggatcgccgtccacc 107185
Query: 293 cgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagccgcgctt 352
||||||| ||||| ||||||||||||||||||||||||| | ||||| ||| |||
Sbjct: 107184 cgtacgggaagatcaccgccgtgttccgcagcggcgggtttctcaggttcagcgccgccg 107125
Query: 353 cgtcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggc 412
||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 107124 cgtcgccggcgtcgccccggaacgcgccgtcgccgtagcccagcacccagaagtcgtgcc 107065
Query: 413 cgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgttctgga 472
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 107064 cgtggaggtgccacgggtgcacctcgctgacgttccgcgccagcgcgttcgcgttctgga 107005
Query: 473 gcagcacgtcgacggtggtgttgtgcgccaggacgtacacgttgtcccccgccgtcgtgt 532
||| |||||| || || | ||||||||| || |||||||||||||| ||| |||| ||||
Sbjct: 107004 gcaccacgtccaccgtcgcgttgtgcgcgagcacgtacacgttgtcgcccaccgtggtgt 106945
Query: 533 tggggttcggcggcggcagcgtcacgtcgta 563
| ||||||| ||||||| || ||||||||||
Sbjct: 106944 tcgggttcgccggcggccgcatcacgtcgta 106914
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 164164 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 164105
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 164104 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 164045
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 164044 tgttccgcagcggcgggtc 164026
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 163983 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 163929
>gb|AACV01014361.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014361, whole
genome shotgun sequence
Length = 28349
Score = 460 bits (232), Expect = e-127
Identities = 396/451 (87%)
Strand = Plus / Minus
Query: 113 cgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgttgggcaccttgg 172
|||||||||||||||||||||| | |||||| ||||| || ||| | ||||| | || |
Sbjct: 24560 cgccggccatgagcgcggtggcggtggcgccgcaggagacggccgccttggggagctcgc 24501
Query: 173 cgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcggctcga 232
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 24500 tgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggaggtgcggctcga 24441
Query: 233 tatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgtccacc 292
| ||||||||||| |||||||| || |||||||||||||||||||||| | ||||||||
Sbjct: 24440 tgtggcagtggaacgcccacaccccggggttgtccgccacgaaccggatcgccgtccacc 24381
Query: 293 cgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagccgcgctt 352
||||||| ||||| ||||||||||||||||||||||||| | ||||| ||| |||
Sbjct: 24380 cgtacgggaagatcaccgccgtgttccgcagcggcgggtttctcaggttcagcgccgccg 24321
Query: 353 cgtcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggc 412
||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 24320 cgtcgccggcgtcgccccggaacgcgccgtcgccgtagcccagcacccagaagtcgtgcc 24261
Query: 413 cgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgttctgga 472
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 24260 cgtggaggtgccacgggtgcacctcgctgacgttccgcgccagcgcgttcgcgttctgga 24201
Query: 473 gcagcacgtcgacggtggtgttgtgcgccaggacgtacacgttgtcccccgccgtcgtgt 532
||| |||||| || || | ||||||||| || |||||||||||||| ||| |||| ||||
Sbjct: 24200 gcaccacgtccaccgtcgcgttgtgcgcgagcacgtacacgttgtcgcccaccgtggtgt 24141
Query: 533 tggggttcggcggcggcagcgtcacgtcgta 563
| ||||||| ||||||| || ||||||||||
Sbjct: 24140 tcgggttcgccggcggccgcatcacgtcgta 24110
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 460 bits (232), Expect = e-127
Identities = 396/451 (87%)
Strand = Plus / Minus
Query: 113 cgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgttgggcaccttgg 172
|||||||||||||||||||||| | |||||| ||||| || ||| | ||||| | || |
Sbjct: 2968015 cgccggccatgagcgcggtggcggtggcgccgcaggagacggccgccttggggagctcgc 2967956
Query: 173 cgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcggctcga 232
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2967955 tgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggaggtgcggctcga 2967896
Query: 233 tatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgtccacc 292
| ||||||||||| |||||||| || |||||||||||||||||||||| | ||||||||
Sbjct: 2967895 tgtggcagtggaacgcccacaccccggggttgtccgccacgaaccggatcgccgtccacc 2967836
Query: 293 cgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagccgcgctt 352
||||||| ||||| ||||||||||||||||||||||||| | ||||| ||| |||
Sbjct: 2967835 cgtacgggaagatcaccgccgtgttccgcagcggcgggtttctcaggttcagcgccgccg 2967776
Query: 353 cgtcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggc 412
||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 2967775 cgtcgccggcgtcgccccggaacgcgccgtcgccgtagcccagcacccagaagtcgtgcc 2967716
Query: 413 cgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgttctgga 472
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 2967715 cgtggaggtgccacgggtgcacctcgctgacgttccgcgccagcgcgttcgcgttctgga 2967656
Query: 473 gcagcacgtcgacggtggtgttgtgcgccaggacgtacacgttgtcccccgccgtcgtgt 532
||| |||||| || || | ||||||||| || |||||||||||||| ||| |||| ||||
Sbjct: 2967655 gcaccacgtccaccgtcgcgttgtgcgcgagcacgtacacgttgtcgcccaccgtggtgt 2967596
Query: 533 tggggttcggcggcggcagcgtcacgtcgta 563
| ||||||| ||||||| || ||||||||||
Sbjct: 2967595 tcgggttcgccggcggccgcatcacgtcgta 2967565
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 3018176 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 3018117
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 3018116 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 3018057
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 3018056 tgttccgcagcggcgggtc 3018038
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3017995 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 3017941
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 460 bits (232), Expect = e-127
Identities = 396/451 (87%)
Strand = Plus / Minus
Query: 113 cgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgttgggcaccttgg 172
|||||||||||||||||||||| | |||||| ||||| || ||| | ||||| | || |
Sbjct: 20666752 cgccggccatgagcgcggtggcggtggcgccgcaggagacggccgccttggggagctcgc 20666693
Query: 173 cgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcggctcga 232
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 20666692 tgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggaggtgcggctcga 20666633
Query: 233 tatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgtccacc 292
| ||||||||||| |||||||| || |||||||||||||||||||||| | ||||||||
Sbjct: 20666632 tgtggcagtggaacgcccacaccccggggttgtccgccacgaaccggatcgccgtccacc 20666573
Query: 293 cgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagccgcgctt 352
||||||| ||||| ||||||||||||||||||||||||| | ||||| ||| |||
Sbjct: 20666572 cgtacgggaagatcaccgccgtgttccgcagcggcgggtttctcaggttcagcgccgccg 20666513
Query: 353 cgtcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggc 412
||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 20666512 cgtcgccggcgtcgccccggaacgcgccgtcgccgtagcccagcacccagaagtcgtgcc 20666453
Query: 413 cgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgttctgga 472
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 20666452 cgtggaggtgccacgggtgcacctcgctgacgttccgcgccagcgcgttcgcgttctgga 20666393
Query: 473 gcagcacgtcgacggtggtgttgtgcgccaggacgtacacgttgtcccccgccgtcgtgt 532
||| |||||| || || | ||||||||| || |||||||||||||| ||| |||| ||||
Sbjct: 20666392 gcaccacgtccaccgtcgcgttgtgcgcgagcacgtacacgttgtcgcccaccgtggtgt 20666333
Query: 533 tggggttcggcggcggcagcgtcacgtcgta 563
| ||||||| ||||||| || ||||||||||
Sbjct: 20666332 tcgggttcgccggcggccgcatcacgtcgta 20666302
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 20716913 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 20716854
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 20716853 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 20716794
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 20716793 tgttccgcagcggcgggtc 20716775
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 20716732 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 20716678
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 460 bits (232), Expect = e-127
Identities = 396/451 (87%)
Strand = Plus / Minus
Query: 113 cgccggccatgagcgcggtggccgnggcgccacaggatacagcctcgttgggcaccttgg 172
|||||||||||||||||||||| | |||||| ||||| || ||| | ||||| | || |
Sbjct: 21550180 cgccggccatgagcgcggtggcggtggcgccgcaggagacggccgccttggggagctcgc 21550121
Query: 173 cgacgaggtcgacagcctcagcgaagatgacgcccatgcccatgtggaggtgcggctcga 232
|||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 21550120 tgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggaggtgcggctcga 21550061
Query: 233 tatggcagtggaaggcccacacgcccgggttgtccgccacgaaccggagcatcgtccacc 292
| ||||||||||| |||||||| || |||||||||||||||||||||| | ||||||||
Sbjct: 21550060 tgtggcagtggaacgcccacaccccggggttgtccgccacgaaccggatcgccgtccacc 21550001
Query: 293 cgtacggaaagatgaccgccgtgttccgcagcggcgggtcccggaggttgagccgcgctt 352
||||||| ||||| ||||||||||||||||||||||||| | ||||| ||| |||
Sbjct: 21550000 cgtacgggaagatcaccgccgtgttccgcagcggcgggtttctcaggttcagcgccgccg 21549941
Query: 353 cgtcggcggcgtccccgcggtacgcgccgtcgccgtagcccagcacccagaagtcgtggc 412
||||| ||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 21549940 cgtcgccggcgtcgccccggaacgcgccgtcgccgtagcccagcacccagaagtcgtgcc 21549881
Query: 413 cgtggaggtgccacgggtgcacctcgctgacgttgcgcgacagcgcgttggcgttctgga 472
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct: 21549880 cgtggaggtgccacgggtgcacctcgctgacgttccgcgccagcgcgttcgcgttctgga 21549821
Query: 473 gcagcacgtcgacggtggtgttgtgcgccaggacgtacacgttgtcccccgccgtcgtgt 532
||| |||||| || || | ||||||||| || |||||||||||||| ||| |||| ||||
Sbjct: 21549820 gcaccacgtccaccgtcgcgttgtgcgcgagcacgtacacgttgtcgcccaccgtggtgt 21549761
Query: 533 tggggttcggcggcggcagcgtcacgtcgta 563
| ||||||| ||||||| || ||||||||||
Sbjct: 21549760 tcgggttcgccggcggccgcatcacgtcgta 21549730
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 21606980 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 21606921
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 21606920 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 21606861
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 21606860 tgttccgcagcggcgggtc 21606842
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 21606799 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 21606745
>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full
insert sequence
Length = 2191
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1859 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 1800
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 1799 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 1740
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 1739 tgttccgcagcggcgggtc 1721
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 1624
>ref|NT_107109.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0062E01, complete sequence
Length = 161804
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 5911 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 5852
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 5851 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 5792
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 5791 tgttccgcagcggcgggtc 5773
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 5676
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0062E01
Length = 161804
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 5911 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 5852
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 5851 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 5792
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 5791 tgttccgcagcggcgggtc 5773
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5730 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 5676
>gb|AACV01014367.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014367, whole
genome shotgun sequence
Length = 15096
Score = 149 bits (75), Expect = 2e-033
Identities = 123/139 (88%)
Strand = Plus / Plus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 2887 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 2946
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacggaaagatgaccgccg 313
|||| | ||||| || |||||||| ||| ||||||||||| ||| |||| |||||||
Sbjct: 2947 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgtgcgggaagaccaccgccg 3006
Query: 314 tgttccgcagcggcgggtc 332
|||||||||||||||||||
Sbjct: 3007 tgttccgcagcggcgggtc 3025
Score = 101 bits (51), Expect = 4e-019
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3068 gccgtcgccgtagccgagcacccagaagtcgtggccgtggaggtgccacgggtgc 3122
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0441A12
Length = 185437
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| || ||||||||||||| || ||||| |||||| ||||||||||| |||||||
Sbjct: 81083 cgaagacgatgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccaca 81142
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||| |||||||||||| |||||||||| |||||||||| ||||
Sbjct: 81143 cgccggggttgtccgccctgaaccggagcgccgtccacccgaacgg 81188
Score = 97.6 bits (49), Expect = 7e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctc 437
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 81264 gccggcgccgtggccgagcacccagaagtcgtggccgtggaggtgccacgggtgcgtctc 81323
Query: 438 gctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|||| ||| || |||| ||||||||||||||||| |||||||||
Sbjct: 81324 gctgctgttcgccgccagcatgttggcgttctggagcacgacgtcgacg 81372
>gb|AACV01019784.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019784, whole
genome shotgun sequence
Length = 58582
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| || ||||||||||||| || ||||| |||||| ||||||||||| |||||||
Sbjct: 21381 cgaagacgatgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccaca 21322
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||| |||||||||||| |||||||||| |||||||||| ||||
Sbjct: 21321 cgccggggttgtccgccctgaaccggagcgccgtccacccgaacgg 21276
Score = 97.6 bits (49), Expect = 7e-018
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctc 437
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 21200 gccggcgccgtggccgagcacccagaagtcgtggccgtggaggtgccacgggtgcgtctc 21141
Query: 438 gctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|||| ||| || |||| ||||||||||||||||| |||||||||
Sbjct: 21140 gctgctgttcgccgccagcatgttggcgttctggagcacgacgtcgacg 21092
>ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1731
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| || ||||||||||||| || ||||| |||||| ||||||||||| |||||||
Sbjct: 1657 cgaagacgatgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccaca 1598
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||| |||||||||||| |||||||||| |||||||||| ||||
Sbjct: 1597 cgccggggttgtccgccctgaaccggagcgccgtccacccgaacgg 1552
Score = 97.6 bits (49), Expect = 7e-018
Identities = 94/109 (86%)
Strand = Plus / Minus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctc 437
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1476 gccggcgccgtggccgagcacccagaagtcgtggccgtggaggtgccacgggtgcgtctc 1417
Query: 438 gctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|||| ||| || |||| ||||||||||||||||| |||||||||
Sbjct: 1416 gctgctgttcgccgccagcatgttggcgttctggagcacgacgtcgacg 1368
>ref|NT_107082.1| Oryza sativa (japonica cultivar-group)
Length = 2185602
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| || ||||||||||||| || ||||| |||||| ||||||||||| |||||||
Sbjct: 610291 cgaagacgatgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccaca 610350
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||| |||||||||||| |||||||||| |||||||||| ||||
Sbjct: 610351 cgccggggttgtccgccctgaaccggagcgccgtccacccgaacgg 610396
Score = 97.6 bits (49), Expect = 7e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctc 437
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 610472 gccggcgccgtggccgagcacccagaagtcgtggccgtggaggtgccacgggtgcgtctc 610531
Query: 438 gctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|||| ||| || |||| ||||||||||||||||| |||||||||
Sbjct: 610532 gctgctgttcgccgccagcatgttggcgttctggagcacgacgtcgacg 610580
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| || ||||||||||||| || ||||| |||||| ||||||||||| |||||||
Sbjct: 1364615 cgaagacgatgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccaca 1364674
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||| |||||||||||| |||||||||| |||||||||| ||||
Sbjct: 1364675 cgccggggttgtccgccctgaaccggagcgccgtccacccgaacgg 1364720
Score = 97.6 bits (49), Expect = 7e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctc 437
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1364796 gccggcgccgtggccgagcacccagaagtcgtggccgtggaggtgccacgggtgcgtctc 1364855
Query: 438 gctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|||| ||| || |||| ||||||||||||||||| |||||||||
Sbjct: 1364856 gctgctgttcgccgccagcatgttggcgttctggagcacgacgtcgacg 1364904
Score = 85.7 bits (43), Expect = 3e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 8901705 tcgccgtagccgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 8901655
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| || ||||||||||||| || ||||| |||||| ||||||||||| |||||||
Sbjct: 10838426 cgaagacgatgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccaca 10838485
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||| |||||||||||| |||||||||| |||||||||| ||||
Sbjct: 10838486 cgccggggttgtccgccctgaaccggagcgccgtccacccgaacgg 10838531
Score = 97.6 bits (49), Expect = 7e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctc 437
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 10838607 gccggcgccgtggccgagcacccagaagtcgtggccgtggaggtgccacgggtgcgtctc 10838666
Query: 438 gctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|||| ||| || |||| ||||||||||||||||| |||||||||
Sbjct: 10838667 gctgctgttcgccgccagcatgttggcgttctggagcacgacgtcgacg 10838715
Score = 85.7 bits (43), Expect = 3e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 18375516 tcgccgtagccgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 18375466
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 99.6 bits (50), Expect = 2e-018
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccaca 253
|||||| || ||||||||||||| || ||||| |||||| ||||||||||| |||||||
Sbjct: 11976603 cgaagacgatgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccaca 11976662
Query: 254 cgcccgggttgtccgccacgaaccggagcatcgtccacccgtacgg 299
|||| |||||||||||| |||||||||| |||||||||| ||||
Sbjct: 11976663 cgccggggttgtccgccctgaaccggagcgccgtccacccgaacgg 11976708
Score = 97.6 bits (49), Expect = 7e-018
Identities = 94/109 (86%)
Strand = Plus / Plus
Query: 378 gccgtcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgcacctc 437
|||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 11976784 gccggcgccgtggccgagcacccagaagtcgtggccgtggaggtgccacgggtgcgtctc 11976843
Query: 438 gctgacgttgcgcgacagcgcgttggcgttctggagcagcacgtcgacg 486
|||| ||| || |||| ||||||||||||||||| |||||||||
Sbjct: 11976844 gctgctgttcgccgccagcatgttggcgttctggagcacgacgtcgacg 11976892
Score = 85.7 bits (43), Expect = 3e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 19369804 tcgccgtagccgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 19369754
>dbj|AK110881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G09, full
insert sequence
Length = 2047
Score = 85.7 bits (43), Expect = 3e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1578 tcgccgtagccgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 1528
>gb|AACV01020364.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020364, whole
genome shotgun sequence
Length = 66182
Score = 85.7 bits (43), Expect = 3e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 20961 tcgccgtagccgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 20911
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
OSJNBa0072P02, complete sequence
Length = 157488
Score = 85.7 bits (43), Expect = 3e-014
Identities = 49/51 (96%)
Strand = Plus / Minus
Query: 382 tcgccgtagcccagcacccagaagtcgtggccgtggaggtgccacgggtgc 432
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 89030 tcgccgtagccgagcacccagaagtcgtgcccgtggaggtgccacgggtgc 88980
>gb|AU033284.1|AU033284 AU033284 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6278_1A, mRNA sequence
Length = 407
Score = 73.8 bits (37), Expect = 1e-010
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 194 cgaagatgacgcccatgcccatgtggaggtgcggctcgatatggcagtggaa 245
|||||| ||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct: 307 cgaagacgacgcccatgcccatgttgaggtgcggctcgatgtngcagtggaa 358
>dbj|AK109523.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F06, full
insert sequence
Length = 1973
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 1708 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 1662
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 141089
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 109422 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 109468
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
chromosome 11 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 164143
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 102958 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 102912
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 437350 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 437304
>gb|AACV01022227.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022227, whole
genome shotgun sequence
Length = 20909
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 9452 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 9498
>gb|AACV01023843.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023843, whole
genome shotgun sequence
Length = 31145
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 20366 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 20412
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109
genomic scaffold, whole genome shotgun sequence
Length = 5753019
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 433225 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 433179
>gb|CH401257.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000094
genomic scaffold, whole genome shotgun sequence
Length = 4775249
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 78600 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 78554
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome
shotgun sequence
Length = 23730396
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 433225 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 433179
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome
shotgun sequence
Length = 22593549
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 380892 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 380846
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
complete sequence
Length = 28386948
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 395640 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 395594
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 344 gccgcgcttcgtcggcggcgtccccg 369
|||||||||||||| |||||||||||
Sbjct: 22901843 gccgcgcttcgtcgtcggcgtccccg 22901868
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
complete sequence
Length = 27566993
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 437350 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 437304
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 395640 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 395594
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 344 gccgcgcttcgtcggcggcgtccccg 369
|||||||||||||| |||||||||||
Sbjct: 23211753 gccgcgcttcgtcgtcggcgtccccg 23211778
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 54.0 bits (27), Expect = 9e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccggagcatcgtccacccgt 295
|||||| ||||||||||||||||||||||| | || || ||||||||
Sbjct: 437350 ccacacccccgggttgtccgccacgaaccgtatcaccgcccacccgt 437304
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0039F10, complete sequence
Length = 139714
Score = 44.1 bits (22), Expect = 0.088
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccg 278
|||||| || ||||||||||||||||||||
Sbjct: 74248 ccacaccccggggttgtccgccacgaaccg 74219
>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
OSJNBa0068E24, complete sequence
Length = 141492
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 344 gccgcgcttcgtcggcggcgtccccg 369
|||||||||||||| |||||||||||
Sbjct: 54350 gccgcgcttcgtcgtcggcgtccccg 54375
>ref|NT_107132.1| Oryza sativa (japonica cultivar-group)
Length = 2337234
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 344 gccgcgcttcgtcggcggcgtccccg 369
|||||||||||||| |||||||||||
Sbjct: 1559593 gccgcgcttcgtcgtcggcgtccccg 1559618
>gb|AACV01006417.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006417, whole
genome shotgun sequence
Length = 7888
Score = 44.1 bits (22), Expect = 0.088
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 249 ccacacgcccgggttgtccgccacgaaccg 278
|||||| || ||||||||||||||||||||
Sbjct: 5625 ccacaccccggggttgtccgccacgaaccg 5654
>gb|AACV01010981.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010981, whole
genome shotgun sequence
Length = 15525
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 344 gccgcgcttcgtcggcggcgtccccg 369
|||||||||||||| |||||||||||
Sbjct: 12590 gccgcgcttcgtcgtcggcgtccccg 12615
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 44.1 bits (22), Expect = 0.088
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccg 278
|||||| || ||||||||||||||||||||
Sbjct: 1761612 ccacaccccggggttgtccgccacgaaccg 1761583
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 344 gccgcgcttcgtcggcggcgtccccg 369
|||||||||||||| |||||||||||
Sbjct: 4151211 gccgcgcttcgtcgtcggcgtccccg 4151236
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 44.1 bits (22), Expect = 0.088
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccg 278
|||||| || ||||||||||||||||||||
Sbjct: 10499898 ccacaccccggggttgtccgccacgaaccg 10499869
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 7682453 cggcggcagcgtcacgtcgta 7682433
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 44.1 bits (22), Expect = 0.088
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 344 gccgcgcttcgtcggcggcgtccccg 369
|||||||||||||| |||||||||||
Sbjct: 4151211 gccgcgcttcgtcgtcggcgtccccg 4151236
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 44.1 bits (22), Expect = 0.088
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccg 278
|||||| || ||||||||||||||||||||
Sbjct: 10692260 ccacaccccggggttgtccgccacgaaccg 10692231
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 7874815 cggcggcagcgtcacgtcgta 7874795
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 44.1 bits (22), Expect = 0.088
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccg 278
|||||| || ||||||||||||||||||||
Sbjct: 10415796 ccacaccccggggttgtccgccacgaaccg 10415767
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 7655976 cggcggcagcgtcacgtcgta 7655956
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 44.1 bits (22), Expect = 0.088
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 249 ccacacgcccgggttgtccgccacgaaccg 278
|||||| || ||||||||||||||||||||
Sbjct: 10417695 ccacaccccggggttgtccgccacgaaccg 10417666
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 7658141 cggcggcagcgtcacgtcgta 7658121
>gb|CB684513.1|CB684513 OSJNEf14B18.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14B18 5', mRNA sequence
Length = 712
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 284 cggcggcagcgtcacgtcgta 304
>dbj|AK111566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074J05, full
insert sequence
Length = 1556
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 298 cggcggcagcgtcacgtcgta 318
>dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A11, full
insert sequence
Length = 2025
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 299 cggcggcagcgtcacgtcgta 319
>dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E03, full
insert sequence
Length = 2098
Score = 42.1 bits (21), Expect = 0.35
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 543 cggcggcagcgtcacgtcgta 563
|||||||||||||||||||||
Sbjct: 299 cggcggcagcgtcacgtcgta 319
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,034,985
Number of Sequences: 438736
Number of extensions: 1034985
Number of successful extensions: 33418
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31750
Number of HSP's gapped (non-prelim): 1645
length of query: 616
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 595
effective length of database: 2,791,206,460
effective search space: 1660767843700
effective search space used: 1660767843700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)