BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK067760.1| Oryza sativa (japonica cultivar-group) cDNA... 400 e-109
gb|AACV01010539.1| Oryza sativa (japonica cultivar-group) c... 400 e-109
ref|XM_474034.1| Oryza sativa (japonica cultivar-group), p... 400 e-109
ref|NT_107200.1| Oryza sativa (japonica cultivar-group) 400 e-109
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 400 e-109
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 400 e-109
emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromoso... 400 e-109
emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromoso... 400 e-109
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 400 e-109
gb|CB673761.1|CB673761 OSJNEe08H08.f OSJNEe Oryza sativa (j... 230 6e-058
gb|CA999625.1|CA999625 S234K_B09 Rice cold stress germinati... 163 1e-037
gb|D24423.1|D24423 RICR1871A Rice root Oryza sativa (japoni... 84 8e-014
>dbj|AK067760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119I03, full
insert sequence
Length = 2377
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 1366 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 1307
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 1306 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 1247
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 1246 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 1187
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 1186 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 1127
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 1126 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 1067
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 1066 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 1007
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 1006 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 947
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 946 caaggcagtaaagcccctttggaagctcctcggcagcaatc 906
>gb|AACV01010539.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010539, whole
genome shotgun sequence
Length = 39866
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 3292 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 3233
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 3232 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 3173
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 3172 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 3113
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 3112 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 3053
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 3052 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 2993
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 2992 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 2933
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 2932 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 2873
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 2872 caaggcagtaaagcccctttggaagctcctcggcagcaatc 2832
>ref|XM_474034.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1671
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 1072 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 1013
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 1012 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 953
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 952 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 893
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 892 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 833
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 832 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 773
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 772 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 713
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 712 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 653
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 652 caaggcagtaaagcccctttggaagctcctcggcagcaatc 612
>ref|NT_107200.1| Oryza sativa (japonica cultivar-group)
Length = 1324591
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 1207377 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 1207318
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 1207317 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 1207258
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 1207257 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 1207198
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 1207197 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 1207138
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 1207137 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 1207078
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 1207077 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 1207018
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 1207017 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 1206958
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 1206957 caaggcagtaaagcccctttggaagctcctcggcagcaatc 1206917
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 10086135 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 10086076
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 10086075 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 10086016
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 10086015 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 10085956
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 10085955 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 10085896
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 10085895 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 10085836
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 10085835 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 10085776
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 10085775 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 10085716
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 10085715 caaggcagtaaagcccctttggaagctcctcggcagcaatc 10085675
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 29230234 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 29230175
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 29230174 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 29230115
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 29230114 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 29230055
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 29230054 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 29229995
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 29229994 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 29229935
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 29229934 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 29229875
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 29229874 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 29229815
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 29229814 caaggcagtaaagcccctttggaagctcctcggcagcaatc 29229774
>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
complete sequence
Length = 159502
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 158484 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 158425
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 158424 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 158365
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 158364 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 158305
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 158304 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 158245
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 158244 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 158185
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 158184 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 158125
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 158124 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 158065
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 158064 caaggcagtaaagcccctttggaagctcctcggcagcaatc 158024
>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
complete sequence
Length = 123480
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 5696 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 5637
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 5636 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 5577
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 5576 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 5517
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 5516 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 5457
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 5456 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 5397
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 5396 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 5337
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 5336 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 5277
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 5276 caaggcagtaaagcccctttggaagctcctcggcagcaatc 5236
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 400 bits (202), Expect = e-109
Identities = 396/461 (85%)
Strand = Plus / Minus
Query: 1 actttgggttcctgaatttaattggtgttccacgactaccactgccagagaagtagaact 60
|||| |||||||||||||| | ||||||||||||| |||||||||||||||||||| | |
Sbjct: 32388895 acttagggttcctgaatttgactggtgttccacgattaccactgccagagaagtagtagt 32388836
Query: 61 tctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatgcattgagccagg 120
|||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||| |
Sbjct: 32388835 tctgggtggcagcatcctggagctgtttaagaacaggaacatacgatgaattgagccaag 32388776
Query: 121 taaagtcctccaccttttgtatctccacagtgacccctctgtagtcattcatgccaaacc 180
| || ||||| |||||||| |||||||||||| | |||||||| ||||||| | | ||||
Sbjct: 32388775 tgaaatcctctaccttttgaatctccacagtggctcctctgtaatcattcagggcgaacc 32388716
Query: 181 atgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcag 240
| ||| |||| |||||||| |||| ||| |||||||| ||||||||||||| ||| ||||
Sbjct: 32388715 acgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcag 32388656
Query: 241 ggtgcctcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctg 300
|| || | || |||| || |||||||| || ||||| |||||||||||||||||||| |
Sbjct: 32388655 ggcgcattgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccg 32388596
Query: 301 agaagacacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcc 360
|||| ||||| |||| || |||||||||||||| || |||||||| |||||||||||||
Sbjct: 32388595 agaaaacacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcc 32388536
Query: 361 tatccgaaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacac 420
| || | |||||||||||| ||||| | |||||||||| ||||||||||||||||| |
Sbjct: 32388535 tctcagtaaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactc 32388476
Query: 421 caaggcaataaagtccctttgggagctcctcagcagcaatc 461
||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 32388475 caaggcagtaaagcccctttggaagctcctcggcagcaatc 32388435
>gb|CB673761.1|CB673761 OSJNEe08H08.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08H08 5', mRNA sequence
Length = 748
Score = 230 bits (116), Expect = 6e-058
Identities = 235/275 (85%)
Strand = Plus / Minus
Query: 187 tcatcggagcatagttcaactcatcagtcactaagtgaaaaacaaccttgtcagggtgcc 246
|||| |||||||| |||| ||| |||||||| ||||||||||||| ||| |||||| ||
Sbjct: 744 tcatgggagcataattcacctcgtcagtcaccaagtgaaaaacaatcttttcagggcgca 685
Query: 247 tcgagtttatagccgtagaattaacaacaactgaaacagcaaggatgttgtctgagaaga 306
| || |||| || |||||||| || ||||| |||||||||||||||||||| ||||| |
Sbjct: 684 ttgaatttagagttgtagaattgacgacaacagaaacagcaaggatgttgtccgagaaaa 625
Query: 307 cacaaaaatgatagaggctgttatccctcagattgctctgcactgctgggctcctatccg 366
|||| |||| || |||||||||||||| || |||||||| |||||||||||||| || |
Sbjct: 624 cacagtaatggtaaaggctgttatcccttaggttgctctgtactgctgggctcctctcag 565
Query: 367 aaaacttcctctgaagctcgggactcttgaaccantccatggttaaccggacaccaaggc 426
|||||||||||| ||||| | |||||||||| ||||||||||||||||| |||||||
Sbjct: 564 taaacttcctctggagctcagttgtcttgaaccattccatggttaaccggactccaaggc 505
Query: 427 aataaagtccctttgggagctcctcagcagcaatc 461
| ||||| |||||||| |||||||| |||||||||
Sbjct: 504 agtaaagcccctttggaagctcctcggcagcaatc 470
>gb|CA999625.1|CA999625 S234K_B09 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 209
Score = 163 bits (82), Expect = 1e-037
Identities = 166/194 (85%)
Strand = Plus / Minus
Query: 49 agaagtagaacttctgtgtagcagcattctgtagctgtttaagaacgggaacatacgatg 108
|||||||| | ||||| || ||||||| ||| |||||||||||||| |||||||||||||
Sbjct: 209 agaagtagtagttctgggtggcagcatcctggagctgtttaagaacaggaacatacgatg 150
Query: 109 cattgagccaggtaaagtcctccaccttttgtatctccacagtgacccctctgtagtcat 168
||||||||| || || ||||| |||||||| |||||||||||| | |||||||| ||||
Sbjct: 149 aattgagccaagtgaaatcctctaccttttgaatctccacagtggctcctctgtaatcat 90
Query: 169 tcatgccaaaccatgccttcatcggagcatagttcaactcatcagtcactaagtgaaaaa 228
||| | | ||||| ||| |||| |||||||| |||| ||| |||||||| ||||||||||
Sbjct: 89 tcagggcgaaccacgccctcatgggagcataattcacctcgtcagtcaccaagtgaaaaa 30
Query: 229 caaccttgtcaggg 242
||| ||| ||||||
Sbjct: 29 caatcttttcaggg 16
>gb|D24423.1|D24423 RICR1871A Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R1871_1A, mRNA sequence
Length = 375
Score = 83.8 bits (42), Expect = 8e-014
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 391 tcttgaaccantccatggttaaccggacaccaaggcaataaagtccctttgggagctcct 450
|||||||| | ||||||||||||||||| | |||||| ||||| |||||||| |||||||
Sbjct: 357 tcttgaacnattccatggttaaccggactcnaaggcagtaaagcccctttggaagctcct 298
Query: 451 cagcagcaatc 461
| |||||||||
Sbjct: 297 cggcagcaatc 287
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 531,330
Number of Sequences: 438736
Number of extensions: 531330
Number of successful extensions: 9069
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9000
Number of HSP's gapped (non-prelim): 69
length of query: 515
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 494
effective length of database: 2,791,206,460
effective search space: 1378855991240
effective search space used: 1378855991240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)