BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430806.2.1
(1380 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK058356.1| Oryza sativa (japonica cultivar-group) cDNA... 666 0.0
dbj|AK102880.1| Oryza sativa (japonica cultivar-group) cDNA... 666 0.0
ref|NM_185688.1| Oryza sativa (japonica cultivar-group), Oz... 666 0.0
ref|NM_185698.1| Oryza sativa (japonica cultivar-group), Oz... 666 0.0
gb|CB000293.1|CB000293 S345U_D08 Rice cold stress germinati... 650 0.0
gb|CB683276.1|CB683276 OSJNEf11H06.r OSJNEf Oryza sativa (j... 535 e-149
gb|AU029621.1|AU029621 AU029621 Rice panicle shorter than 3... 319 2e-084
gb|AU064550.1|AU064550 AU064550 Rice panicle shorter than 3... 218 6e-054
gb|D47620.1|D47620 RICS13223A Rice green shoot Oryza sativa... 210 1e-051
gb|AU082535.1|AU082535 AU082535 Rice panicle shorter than 3... 190 1e-045
gb|C28096.1|C28096 C28096 Rice callus cDNA Oryza sativa (ja... 178 5e-042
dbj|AP002069.2| Oryza sativa (japonica cultivar-group) geno... 159 5e-036
gb|AACV01013141.1| Oryza sativa (japonica cultivar-group) c... 159 5e-036
ref|NT_079872.2| Oryza sativa (japonica cultivar-group) 159 5e-036
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 159 5e-036
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 159 5e-036
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 159 5e-036
gb|D48811.1|D48811 RICS15223A Rice green shoot Oryza sativa... 135 7e-029
gb|CA998031.1|CA998031 S234D1_F11 Rice cold stress germinat... 96 6e-017
gb|AQ327314.1|AQ327314 nbxb0040B20r CUGI Rice BAC Library O... 92 1e-015
gb|AQ858216.1|AQ858216 nbeb0012O01f CUGI Rice BAC Library (... 92 1e-015
gb|AQ913272.1|AQ913272 nbeb0040L10f CUGI Rice BAC Library (... 70 4e-009
gb|C74877.1|C74877 C74877 Rice cDNA from immature leaf incl... 56 5e-005
gb|AU093420.1|AU093420 AU093420 Rice green shoot Oryza sati... 56 5e-005
dbj|AK069501.1| Oryza sativa (japonica cultivar-group) cDNA... 56 5e-005
ref|XM_482156.1| Oryza sativa (japonica cultivar-group), mRNA 56 5e-005
gb|CA999112.1|CA999112 S234N_G08 Rice cold stress germinati... 46 0.051
gb|CB670945.1|CB670945 OSJNEe04E13.f OSJNEe Oryza sativa (j... 46 0.051
gb|CB670946.1|CB670946 OSJNEe04E13.r OSJNEe Oryza sativa (j... 46 0.051
dbj|AK106258.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.20
gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNB... 44 0.20
gb|AACV01007778.1| Oryza sativa (japonica cultivar-group) c... 44 0.20
ref|XM_469521.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.20
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 44 0.20
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 44 0.20
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.20
>dbj|AK058356.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-E12, full
insert sequence
Length = 1366
Score = 666 bits (336), Expect = 0.0
Identities = 594/680 (87%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 460 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 519
Query: 555 tccgtggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtag 614
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 520 tccgtggctcatggatgccgagaggtgatgctctgaagaagcttgaggagaagggtgtgg 579
Query: 615 ctattcgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattg 674
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 580 tcattcgttttgtcattggtcggagtgcaaatcgaggtgatagcttggaccgcaacatcg 639
Query: 675 atgatgaaaatcggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcag 734
||||||||||||| | ||| || || ||||||||||||||||||||||| || |||||||
Sbjct: 640 atgatgaaaatcgtcggacgaaagatttcttgattcttgaaagtcatgaggaagctgcag 699
Query: 735 aagaattaccgagcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcag 794
| || ||||| ||||||| || ||||||||||||| ||| ||||||| ||||| ||||
Sbjct: 700 aggagttaccaagcaaagttaagtttttcttcagtgcagcaattgaagcttgggacgcag 759
Query: 795 aattttatgtcaaagttgaagataacattaatcttgacttagctgggttaattgagatgc 854
| || ||||| ||||| || || |||||||| |||||| | ||||| |||||||||||||
Sbjct: 760 agttctatgtgaaagtcgatgacaacattaaccttgacctggctggattaattgagatgc 819
Query: 855 tcgaaggccgtcgaggtagccaaggattgtacatgggttgtatgaaatcagggatggtca 914
| |||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 820 ttgaagcccgtcgaggtagccaaggactgtacatgggttgcatgaaatcaggaggtgttg 879
Query: 915 taagtgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaa 974
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 880 taagtgaagagggtcaacaatggtatgaacctgaatggtggaagtttggagattcaaaaa 939
Query: 975 cgtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctaca 1034
|||||||||| || ||||| ||| |||||||||||||||| || |||||||| |||||||
Sbjct: 940 cgtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctaca 999
Query: 1035 tcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcat 1094
| |||||||| ||||| || || ||||| ||||| || ||||| ||||||||||||||||
Sbjct: 1000 ttaacataaacagtgcatcgctacagagctatgcccatgatgacatatcagtaggttcat 1059
Query: 1095 ggatgatgggactgaatgcaacttacgtggatgatgaccggttgtgctgcagcagttcca 1154
|||||||||| |||||| | ||||| || ||||| ||||| ||||||||| ||||||| |
Sbjct: 1060 ggatgatggggctgaatactacttatgttgatgacgaccgtttgtgctgcggcagttcta 1119
Query: 1155 gacaagagaaaatctgttcc 1174
||||||||||| | ||||||
Sbjct: 1120 gacaagagaaagtatgttcc 1139
Score = 272 bits (137), Expect = 5e-070
Identities = 295/348 (84%), Gaps = 6/348 (1%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 80 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 139
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 140 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 199
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 200 cttcctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcagac 259
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctc 351
||| ||||||||| || ||||||||||||||||| || | ||||||||||| ||
Sbjct: 260 gcggatgatcctgtctggtctcctcgagaagagctccggcaatcttccgaaggtgctgtc 319
Query: 352 ggtggaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggc 411
||||||||||||||| ||||| || || |||| | ||||| ||||| |||| |||||
Sbjct: 320 ggtggaggacaagctgaggaatctaggatgcattggaattgggaggaagattgcggaggc 379
Query: 412 ggagatggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
|| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 380 agaaatggaccttacaaaggcgaagagcgaggggtatctgtgggggaa 427
>dbj|AK102880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112G20, full
insert sequence
Length = 1337
Score = 666 bits (336), Expect = 0.0
Identities = 594/680 (87%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 443 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 502
Query: 555 tccgtggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtag 614
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 503 tccgtggctcatggatgccgagaggtgatgctctgaagaagcttgaggagaagggtgtgg 562
Query: 615 ctattcgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattg 674
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 563 tcattcgttttgtcattggtcggagtgcaaatcgaggtgatagcttggaccgcaacatcg 622
Query: 675 atgatgaaaatcggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcag 734
||||||||||||| | ||| || || ||||||||||||||||||||||| || |||||||
Sbjct: 623 atgatgaaaatcgtcggacgaaagatttcttgattcttgaaagtcatgaggaagctgcag 682
Query: 735 aagaattaccgagcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcag 794
| || ||||| ||||||| || ||||||||||||| ||| ||||||| ||||| ||||
Sbjct: 683 aggagttaccaagcaaagttaagtttttcttcagtgcagcaattgaagcttgggacgcag 742
Query: 795 aattttatgtcaaagttgaagataacattaatcttgacttagctgggttaattgagatgc 854
| || ||||| ||||| || || |||||||| |||||| | ||||| |||||||||||||
Sbjct: 743 agttctatgtgaaagtcgatgacaacattaaccttgacctggctggattaattgagatgc 802
Query: 855 tcgaaggccgtcgaggtagccaaggattgtacatgggttgtatgaaatcagggatggtca 914
| |||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 803 ttgaagcccgtcgaggtagccaaggactgtacatgggttgcatgaaatcaggaggtgttg 862
Query: 915 taagtgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaa 974
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 863 taagtgaagagggtcaacaatggtatgaacctgaatggtggaagtttggagattcaaaaa 922
Query: 975 cgtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctaca 1034
|||||||||| || ||||| ||| |||||||||||||||| || |||||||| |||||||
Sbjct: 923 cgtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctaca 982
Query: 1035 tcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcat 1094
| |||||||| ||||| || || ||||| ||||| || ||||| ||||||||||||||||
Sbjct: 983 ttaacataaacagtgcatcgctacagagctatgcccatgatgacatatcagtaggttcat 1042
Query: 1095 ggatgatgggactgaatgcaacttacgtggatgatgaccggttgtgctgcagcagttcca 1154
|||||||||| |||||| | ||||| || ||||| ||||| ||||||||| ||||||| |
Sbjct: 1043 ggatgatggggctgaatactacttatgttgatgacgaccgtttgtgctgcggcagttcta 1102
Query: 1155 gacaagagaaaatctgttcc 1174
||||||||||| | ||||||
Sbjct: 1103 gacaagagaaagtatgttcc 1122
Score = 272 bits (137), Expect = 5e-070
Identities = 295/348 (84%), Gaps = 6/348 (1%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 63 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 122
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 123 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 182
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 183 cttcctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcagac 242
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctc 351
||| ||||||||| || ||||||||||||||||| || | ||||||||||| ||
Sbjct: 243 gcggatgatcctgtctggtctcctcgagaagagctccggcaatcttccgaaggtgctgtc 302
Query: 352 ggtggaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggc 411
||||||||||||||| ||||| || || |||| | ||||| ||||| |||| |||||
Sbjct: 303 ggtggaggacaagctgaggaatctaggatgcattggaattgggaggaagattgcggaggc 362
Query: 412 ggagatggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
|| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 363 agaaatggaccttacaaaggcgaagagcgaggggtatctgtgggggaa 410
>ref|NM_185688.1| Oryza sativa (japonica cultivar-group), Ozsa8039 predicted mRNA
Length = 1065
Score = 666 bits (336), Expect = 0.0
Identities = 594/680 (87%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 377 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 436
Query: 555 tccgtggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtag 614
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 437 tccgtggctcatggatgccgagaggtgatgctctgaagaagcttgaggagaagggtgtgg 496
Query: 615 ctattcgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattg 674
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 497 tcattcgttttgtcattggtcggagtgcaaatcgaggtgatagcttggaccgcaacatcg 556
Query: 675 atgatgaaaatcggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcag 734
||||||||||||| | ||| || || ||||||||||||||||||||||| || |||||||
Sbjct: 557 atgatgaaaatcgtcggacgaaagatttcttgattcttgaaagtcatgaggaagctgcag 616
Query: 735 aagaattaccgagcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcag 794
| || ||||| ||||||| || ||||||||||||| ||| ||||||| ||||| ||||
Sbjct: 617 aggagttaccaagcaaagttaagtttttcttcagtgcagcaattgaagcttgggacgcag 676
Query: 795 aattttatgtcaaagttgaagataacattaatcttgacttagctgggttaattgagatgc 854
| || ||||| ||||| || || |||||||| |||||| | ||||| |||||||||||||
Sbjct: 677 agttctatgtgaaagtcgatgacaacattaaccttgacctggctggattaattgagatgc 736
Query: 855 tcgaaggccgtcgaggtagccaaggattgtacatgggttgtatgaaatcagggatggtca 914
| |||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 737 ttgaagcccgtcgaggtagccaaggactgtacatgggttgcatgaaatcaggaggtgttg 796
Query: 915 taagtgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaa 974
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 797 taagtgaagagggtcaacaatggtatgaacctgaatggtggaagtttggagattcaaaaa 856
Query: 975 cgtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctaca 1034
|||||||||| || ||||| ||| |||||||||||||||| || |||||||| |||||||
Sbjct: 857 cgtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctaca 916
Query: 1035 tcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcat 1094
| |||||||| ||||| || || ||||| ||||| || ||||| ||||||||||||||||
Sbjct: 917 ttaacataaacagtgcatcgctacagagctatgcccatgatgacatatcagtaggttcat 976
Query: 1095 ggatgatgggactgaatgcaacttacgtggatgatgaccggttgtgctgcagcagttcca 1154
|||||||||| |||||| | ||||| || ||||| ||||| ||||||||| ||||||| |
Sbjct: 977 ggatgatggggctgaatactacttatgttgatgacgaccgtttgtgctgcggcagttcta 1036
Query: 1155 gacaagagaaaatctgttcc 1174
||||||||||| | ||||||
Sbjct: 1037 gacaagagaaagtatgttcc 1056
Score = 264 bits (133), Expect = 1e-067
Identities = 291/344 (84%), Gaps = 6/344 (1%)
Strand = Plus / Plus
Query: 122 atggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgccctcc 181
|||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |||||
Sbjct: 1 atggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctcctcc 60
Query: 182 tcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggccttc 235
||||| || ||| || |||||| ||||||| |||||||| |||||||||||||||
Sbjct: 61 tcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggccttc 120
Query: 236 ctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagacccgg 295
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 121 ctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcagacgcgg 180
Query: 296 gcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctcggtg 355
||||||||| || ||||||||||||||||| || | ||||||||||| ||||||
Sbjct: 181 atgatcctgtctggtctcctcgagaagagctccggcaatcttccgaaggtgctgtcggtg 240
Query: 356 gaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggcggag 415
||||||||||| ||||| || || |||| | ||||| ||||| |||| ||||| ||
Sbjct: 241 gaggacaagctgaggaatctaggatgcattggaattgggaggaagattgcggaggcagaa 300
Query: 416 atggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
|||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 301 atggaccttacaaaggcgaagagcgaggggtatctgtgggggaa 344
>ref|NM_185698.1| Oryza sativa (japonica cultivar-group), Ozsa8049 predicted mRNA
Length = 1065
Score = 666 bits (336), Expect = 0.0
Identities = 594/680 (87%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 377 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 436
Query: 555 tccgtggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtag 614
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 437 tccgtggctcatggatgccgagaggtgatgctctgaagaagcttgaggagaagggtgtgg 496
Query: 615 ctattcgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattg 674
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 497 tcattcgttttgtcattggtcggagtgcaaatcgaggtgatagcttggaccgcaacatcg 556
Query: 675 atgatgaaaatcggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcag 734
||||||||||||| | ||| || || ||||||||||||||||||||||| || |||||||
Sbjct: 557 atgatgaaaatcgtcggacgaaagatttcttgattcttgaaagtcatgaggaagctgcag 616
Query: 735 aagaattaccgagcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcag 794
| || ||||| ||||||| || ||||||||||||| ||| ||||||| ||||| ||||
Sbjct: 617 aggagttaccaagcaaagttaagtttttcttcagtgcagcaattgaagcttgggacgcag 676
Query: 795 aattttatgtcaaagttgaagataacattaatcttgacttagctgggttaattgagatgc 854
| || ||||| ||||| || || |||||||| |||||| | ||||| |||||||||||||
Sbjct: 677 agttctatgtgaaagtcgatgacaacattaaccttgacctggctggattaattgagatgc 736
Query: 855 tcgaaggccgtcgaggtagccaaggattgtacatgggttgtatgaaatcagggatggtca 914
| |||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 737 ttgaagcccgtcgaggtagccaaggactgtacatgggttgcatgaaatcaggaggtgttg 796
Query: 915 taagtgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaa 974
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 797 taagtgaagagggtcaacaatggtatgaacctgaatggtggaagtttggagattcaaaaa 856
Query: 975 cgtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctaca 1034
|||||||||| || ||||| ||| |||||||||||||||| || |||||||| |||||||
Sbjct: 857 cgtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctaca 916
Query: 1035 tcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcat 1094
| |||||||| ||||| || || ||||| ||||| || ||||| ||||||||||||||||
Sbjct: 917 ttaacataaacagtgcatcgctacagagctatgcccatgatgacatatcagtaggttcat 976
Query: 1095 ggatgatgggactgaatgcaacttacgtggatgatgaccggttgtgctgcagcagttcca 1154
|||||||||| |||||| | ||||| || ||||| ||||| ||||||||| ||||||| |
Sbjct: 977 ggatgatggggctgaatactacttatgttgatgacgaccgtttgtgctgcggcagttcta 1036
Query: 1155 gacaagagaaaatctgttcc 1174
||||||||||| | ||||||
Sbjct: 1037 gacaagagaaagtatgttcc 1056
Score = 264 bits (133), Expect = 1e-067
Identities = 291/344 (84%), Gaps = 6/344 (1%)
Strand = Plus / Plus
Query: 122 atggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgccctcc 181
|||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |||||
Sbjct: 1 atggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctcctcc 60
Query: 182 tcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggccttc 235
||||| || ||| || |||||| ||||||| |||||||| |||||||||||||||
Sbjct: 61 tcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggccttc 120
Query: 236 ctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagacccgg 295
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 121 ctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcagacgcgg 180
Query: 296 gcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctcggtg 355
||||||||| || ||||||||||||||||| || | ||||||||||| ||||||
Sbjct: 181 atgatcctgtctggtctcctcgagaagagctccggcaatcttccgaaggtgctgtcggtg 240
Query: 356 gaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggcggag 415
||||||||||| ||||| || || |||| | ||||| ||||| |||| ||||| ||
Sbjct: 241 gaggacaagctgaggaatctaggatgcattggaattgggaggaagattgcggaggcagaa 300
Query: 416 atggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
|||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 301 atggaccttacaaaggcgaagagcgaggggtatctgtgggggaa 344
>gb|CB000293.1|CB000293 S345U_D08 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 863
Score = 650 bits (328), Expect = 0.0
Identities = 592/680 (87%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||| |||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 23 agctccttgctgttattggcttttacactggttttggttcccggctcaagaggaacacct 82
Query: 555 tccgtggctcctggatgccaagaggtgatgctctgaagaagcttgaggaaaagggtgtag 614
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 83 tccgtggctcatggatgccgagaggtgatgctctgaagaagcttgaggagaagggtgtgg 142
Query: 615 ctattcgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattg 674
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 143 tcattcgttttgtcattggtcggagtgcaaatcgaggtgatagcttggaccgcaacatcg 202
Query: 675 atgatgaaaatcggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcag 734
||||||||||||| | ||| || || ||||||||||||||||||||||| || |||||||
Sbjct: 203 atgatgaaaatcgtcggacgaaagatttcttgattcttgaaagtcatgaggaagctgcag 262
Query: 735 aagaattaccgagcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcag 794
| || ||||| ||||||| || ||||||||||||| ||| ||||||| ||||| ||||
Sbjct: 263 aggagttaccaagcaaagttaagtttttcttcagtgcagcaattgaagcttgggacgcag 322
Query: 795 aattttatgtcaaagttgaagataacattaatcttgacttagctgggttaattgagatgc 854
| || ||||| ||||| || || |||||||| |||||| | ||||| |||||||||||||
Sbjct: 323 agttctatgtgaaagtcgatgacaacattaaccttgacctggctggattaattgagatgc 382
Query: 855 tcgaaggccgtcgaggtagccaaggattgtacatgggttgtatgaaatcagggatggtca 914
| |||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct: 383 ttgaagcccgtcgaggtagccaaggactgtacatgggttgcatgaaatcaggaggtgttg 442
Query: 915 taagtgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaa 974
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 443 taagtgaagagggtcaacaatggtatgaacctgaatggtggaagtttggagattcaaaaa 502
Query: 975 cgtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctaca 1034
|||||||||| || ||||| ||| |||||||||||||||| || |||||||| |||||||
Sbjct: 503 cgtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctaca 562
Query: 1035 tcaacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcat 1094
| |||||||| ||||| || || ||||| ||||| || ||||| ||||||||||||||||
Sbjct: 563 ttaacataaacagtgcatcgctacagagctatgcccatgatgacatatcagtaggttcat 622
Query: 1095 ggatgatgggactgaatgcaacttacgtggatgatgaccggttgtgctgcagcagttcca 1154
|||||||||| |||||| | ||||| || ||||| ||||| ||||||||| ||||||| |
Sbjct: 623 ggatgatggggctgaatactacttatgttgatgacgaccgtttgtgctgcggcagttcta 682
Query: 1155 gacaagagaaaatctgttcc 1174
||||||||||| | ||||||
Sbjct: 683 gacaagagaaagtatgttcc 702
>gb|CB683276.1|CB683276 OSJNEf11H06.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf11H06 3', mRNA sequence
Length = 839
Score = 535 bits (270), Expect = e-149
Identities = 486/558 (87%)
Strand = Plus / Minus
Query: 617 attcgttttgttattggtcggagtgcaaatcgaggtgatagcttggaccgtaatattgat 676
||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||
Sbjct: 837 attcgttttgtcattggtcggagtgcaaatcgaggtgatagcttggaccgcaacatcgat 778
Query: 677 gatgaaaatcggcagacaaaggacttcttgattcttgaaagtcatgaagaggctgcagaa 736
||||||||||| | ||| || || ||||||||||||||||||||||| || ||||||||
Sbjct: 777 gatgaaaatcgtcggacgaaagatttcttgattcttgaaagtcatgaggaagctgcagag 718
Query: 737 gaattaccgagcaaagcaaaaattttcttcagtgctgcagttgaagcctgggatgcagaa 796
|| ||||| ||||||| || ||||||||||||| ||| ||||||| ||||| |||||
Sbjct: 717 gagttaccaagcaaagttaagtttttcttcagtgcagcaattgaagcttgggacgcagag 658
Query: 797 ttttatgtcaaagttgaagataacattaatcttgacttagctgggttaattgagatgctc 856
|| ||||| ||||| || || |||||||| |||||| | ||||| ||||||||||||||
Sbjct: 657 ttctatgtgaaagtcgatgacaacattaaccttgacctggctggattaattgagatgctt 598
Query: 857 gaaggccgtcgaggtagccaaggattgtacatgggttgtatgaaatcagggatggtcata 916
|||| ||||||||||||||||||| ||||||||||||| ||||||||||| || ||
Sbjct: 597 gaagcccgtcgaggtagccaaggactgtacatgggttgcatgaaatcaggaggtgttgta 538
Query: 917 agtgaagagggccaacaatggtatgaacctgagtggtggaaatttggagattcaaaaacg 976
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 537 agtgaagagggtcaacaatggtatgaacctgaatggtggaagtttggagattcaaaaacg 478
Query: 977 tattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacatc 1036
|||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 477 tattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacatt 418
Query: 1037 aacataaatagtgcgtcactgcagagttatgcacacgatgatatatcagtaggttcatgg 1096
|||||||| ||||| || || ||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 417 aacataaacagtgcatcgctacagagctatgcccatgatgacatatcagtaggttcatgg 358
Query: 1097 atgatgggactgaatgcaacttacgtggatgatgaccggttgtgctgcagcagttccaga 1156
|||||||| |||||| | ||||| || ||||| ||||| ||||||||| ||||||| |||
Sbjct: 357 atgatggggctgaatactacttatgttgatgacgaccgtttgtgctgcggcagttctaga 298
Query: 1157 caagagaaaatctgttcc 1174
||||||||| | ||||||
Sbjct: 297 caagagaaagtatgttcc 280
>gb|AU029621.1|AU029621 AU029621 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31157_6Z, mRNA sequence
Length = 717
Score = 319 bits (161), Expect = 2e-084
Identities = 344/401 (85%), Gaps = 3/401 (0%)
Strand = Plus / Plus
Query: 777 ttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgacttag 836
||||||| ||||| ||||| || ||||| ||||| || || |||||||| || ||| | |
Sbjct: 80 ttgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaacctggacctgg 139
Query: 837 ctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggttgt- 895
|||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct: 140 ctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggttgcc 199
Query: 896 atgaaatcagggatggtcataagtgaagagggccaacaatggtatgaacctgagtggtgg 955
||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 200 atgaaatcaggaggtgttgtaagtgaagagggtcaacaatggtatgaacctgaatggtgg 259
Query: 956 aaatttggagattcaaaaacgtattttcgacacgctt-ctggttctttgtttatcctctc 1014
|| |||||||||||||||||||||||||| || |||| | ||| | ||||||||||||||
Sbjct: 260 aagtttggagattcaaaaacgtattttcgccatgcttcccggtgccttgtttatcctctc 319
Query: 1015 aaaaaatttggctcgctacatcaacataaatagtgcgtcactgcagagttatg-cacacg 1073
|| |||||||| |||||||| |||||||| ||||| || || ||||| |||| | || |
Sbjct: 320 taacaatttggcacgctacattaacataaacagtgcatcgctacagagctatgccccatg 379
Query: 1074 atgatatatcagtaggttcatggatgatgggactgaatgcaacttacgtggatgatgacc 1133
|||| |||||||||||||||||||||||||| |||||| | ||||| || ||||| ||||
Sbjct: 380 atgacatatcagtaggttcatggatgatggggctgaatactacttatgttgatgacgacc 439
Query: 1134 ggttgtgctgcagcagttccagacaagagaaaatctgttcc 1174
| ||||||||| ||||||| |||||||||||| | ||||||
Sbjct: 440 gtttgtgctgcggcagttctagacaagagaaagtatgttcc 480
>gb|AU064550.1|AU064550 AU064550 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31975_1A, mRNA sequence
Length = 339
Score = 218 bits (110), Expect = 6e-054
Identities = 189/216 (87%), Gaps = 6/216 (2%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 49 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgnttcaagcccccctc 108
Query: 178 ctcctcctctg------cttcctccgccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| | | ||| |||||||| ||||||| |||||||| |||||||||||
Sbjct: 109 ctcctcctccgnctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 168
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 169 cttcctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcagac 228
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctc 327
||| ||||||||| || |||||||||||||||||
Sbjct: 229 gcggatgatcctgtctggtctcctcgagaagagctc 264
>gb|D47620.1|D47620 RICS13223A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 435
Score = 210 bits (106), Expect = 1e-051
Identities = 290/348 (83%), Gaps = 9/348 (2%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| |||||||| || |||| |||| |
Sbjct: 18 cgccatggagacgctggcgagcgccatgcggcgggagaaccg-cgtntcaagcccccctc 76
Query: 178 ctcctcctctgcttcctc------cgccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| | ||||||| ||||||| |||||||| |||||||||||
Sbjct: 77 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 136
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 137 cttcctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcaga- 195
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctc 351
| || ||||||||| || ||||||||||||||||| || | ||||| ||||| ||
Sbjct: 196 cgggatgatcctgtctggtctcctcgagaagagctccggcaatcttccgaa-gtgctgtc 254
Query: 352 ggtggaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggc 411
||||||||||||||| ||||| || || |||| | ||||| ||||| |||| |||||
Sbjct: 255 ggtggaggacaagctgaggaatctaggatgcattggaattgggaggaagattgcggaggc 314
Query: 412 ggagatggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
|| |||||||| || ||||| |||||||| ||||| |||||||||||
Sbjct: 315 agaaatggaccttacaaaggcgaagagcgaagggtatctgtgggggaa 362
>gb|AU082535.1|AU082535 AU082535 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E31157, mRNA sequence
Length = 436
Score = 190 bits (96), Expect = 1e-045
Identities = 287/345 (83%), Gaps = 10/345 (2%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||| || ||| |||| |
Sbjct: 18 cgccatggagacgctggcgagcgccatgcggcgggagaaccgcgtntc-aagcccccctc 76
Query: 178 ctcctcctc-tgct-----tcctccgccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| |||| ||| |||||||| ||||||| |||||||| |||||||||||
Sbjct: 77 ctcctcctcctgctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 136
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 137 cttcctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcaga- 195
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctctaccagcgtcccgaaggtgctctc 351
| || ||||||||| || ||||||||||||||||| || | ||||| ||||| ||
Sbjct: 196 cgggatgatcctgtctggtctcctcgagaagagctccggcaatcttccgaa-gtgctgtc 254
Query: 352 ggtggaggacaagcttaggaaccttgggtgcaaggcgattggaaggaaaattgttgaggc 411
||||||||||||||| ||||| || || |||| | ||||| ||||| |||| |||||
Sbjct: 255 ggtggaggacaagctgaggaatctaggatgcattggaattgggaggaagattgcggaggc 314
Query: 412 ggagatggacctgaccaaggccaagagcgaggggtacctgtgggg 456
|| |||||||| || || || || ||||| ||||| ||||||||
Sbjct: 315 agaaatggaccttacaaangcgaa-agcgangggtatctgtgggg 358
>gb|C28096.1|C28096 C28096 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C53956_1A, mRNA sequence
Length = 397
Score = 178 bits (90), Expect = 5e-042
Identities = 185/216 (85%), Gaps = 7/216 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| |||||||| || |||| |||| |
Sbjct: 14 cgccatggagacgctggcgagcgccatgcggcgggagaaccg-cgtntcaagcccccctc 72
Query: 178 ctcctcctctgcttcct------ccgccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| |||||||| ||||||| |||||||| |||||||||||
Sbjct: 73 ctcctcctccgcctccgnctccgccgccctctcctcggggagggtccccctcgtcatggc 132
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagac 291
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 133 cttcctctcctgcctcgcgtggctctacgtcgccggccggctgtggcaggacgcgcagac 192
Query: 292 ccgggcgatcctgtccggcctcctcgagaagagctc 327
| ||||||||| || |||||||||||||||||
Sbjct: 193 gggaatgatcctgtctggtctcctcgagaagagctc 228
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0015E04
Length = 152046
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 135813 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 135872
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 135873 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 135932
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 135933 cttcctctcctgcctcgcgtggctctacgtcgccggccg 135971
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 97757 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 97816
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 97817 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 97876
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 97877 cttcctctcctgcctcgcgtggctctacgtcgccggccg 97915
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 137518 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 137577
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 137578 tgcatgaaatcagg 137591
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 99462 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 99521
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 99522 tgcatgaaatcagg 99535
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 139277 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 139336
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 139337 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 139379
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 101221 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 101280
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 101281 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 101323
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 136454 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 136513
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 136514 tccgtggctcatggatgccgagaggt 136539
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 98398 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 98457
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 98458 tccgtggctcatggatgccgagaggt 98483
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 136911 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 136970
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 136971 gatttcttgattcttg 136986
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 98855 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 98914
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 98915 gatttcttgattcttg 98930
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 136719 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 136778
Query: 637 gag 639
|||
Sbjct: 136779 gag 136781
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 98663 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 98722
Query: 637 gag 639
|||
Sbjct: 98723 gag 98725
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 138048 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 138096
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 99992 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 100040
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 137318 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 137377
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 137378 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 137437
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 99262 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 99321
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 99322 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 99381
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 138702 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 138761
Query: 1036 caacataaa 1044
||||||||
Sbjct: 138762 taacataaa 138770
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 100646 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 100705
Query: 1036 caacataaa 1044
||||||||
Sbjct: 100706 taacataaa 100714
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 136062 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 136116
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 98006 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 98060
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 136351 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 136410
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 136411 ctgtgggggaa 136421
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 98295 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 98354
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 98355 ctgtgggggaa 98365
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 136216 ccgaaggtgctgtcggtggaggacaagctgaggaa 136250
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 98160 ccgaaggtgctgtcggtggaggacaagctgaggaa 98194
>gb|AACV01013141.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013141, whole
genome shotgun sequence
Length = 21872
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Minus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 11988 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 11929
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 11928 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 11869
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 11868 cttcctctcctgcctcgcgtggctctacgtcgccggccg 11830
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Minus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 10283 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 10224
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 10223 tgcatgaaatcagg 10210
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Minus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 8524 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 8465
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 8464 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 8422
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 11347 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 11288
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 11287 tccgtggctcatggatgccgagaggt 11262
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Minus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 10890 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 10831
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 10830 gatttcttgattcttg 10815
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 11082 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 11023
Query: 637 gag 639
|||
Sbjct: 11022 gag 11020
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 9753 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 9705
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 10483 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 10424
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 10423 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 10364
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 9099 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 9040
Query: 1036 caacataaa 1044
||||||||
Sbjct: 9039 taacataaa 9031
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 11739 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 11685
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 11450 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 11391
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 11390 ctgtgggggaa 11380
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 11585 ccgaaggtgctgtcggtggaggacaagctgaggaa 11551
>ref|NT_079872.2| Oryza sativa (japonica cultivar-group)
Length = 1124013
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 965890 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 965949
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 965950 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 966009
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 966010 cttcctctcctgcctcgcgtggctctacgtcgccggccg 966048
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 927834 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 927893
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 927894 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 927953
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 927954 cttcctctcctgcctcgcgtggctctacgtcgccggccg 927992
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 967595 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 967654
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 967655 tgcatgaaatcagg 967668
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 929539 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 929598
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 929599 tgcatgaaatcagg 929612
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 969354 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 969413
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 969414 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 969456
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 931298 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 931357
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 931358 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 931400
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 966531 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 966590
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 966591 tccgtggctcatggatgccgagaggt 966616
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 928475 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 928534
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 928535 tccgtggctcatggatgccgagaggt 928560
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 966988 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 967047
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 967048 gatttcttgattcttg 967063
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 928932 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 928991
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 928992 gatttcttgattcttg 929007
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 966796 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 966855
Query: 637 gag 639
|||
Sbjct: 966856 gag 966858
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 928740 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 928799
Query: 637 gag 639
|||
Sbjct: 928800 gag 928802
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 968125 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 968173
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 930069 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 930117
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 967395 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 967454
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 967455 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 967514
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 929339 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 929398
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 929399 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 929458
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 968779 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 968838
Query: 1036 caacataaa 1044
||||||||
Sbjct: 968839 taacataaa 968847
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 930723 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 930782
Query: 1036 caacataaa 1044
||||||||
Sbjct: 930783 taacataaa 930791
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 966139 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 966193
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 928083 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 928137
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 966428 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 966487
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 966488 ctgtgggggaa 966498
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 928372 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 928431
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 928432 ctgtgggggaa 928442
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 966293 ccgaaggtgctgtcggtggaggacaagctgaggaa 966327
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 928237 ccgaaggtgctgtcggtggaggacaagctgaggaa 928271
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 3723877 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 3723936
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 3723937 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 3723996
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 3723997 cttcctctcctgcctcgcgtggctctacgtcgccggccg 3724035
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 3725582 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 3725641
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 3725642 tgcatgaaatcagg 3725655
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 3727341 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 3727400
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 3727401 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 3727443
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 3724518 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 3724577
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 3724578 tccgtggctcatggatgccgagaggt 3724603
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 3724975 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 3725034
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 3725035 gatttcttgattcttg 3725050
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 3724783 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 3724842
Query: 637 gag 639
|||
Sbjct: 3724843 gag 3724845
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 3726112 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 3726160
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 3725382 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 3725441
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 3725442 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 3725501
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 3726766 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 3726825
Query: 1036 caacataaa 1044
||||||||
Sbjct: 3726826 taacataaa 3726834
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 3724126 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 3724180
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 3724415 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 3724474
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 3724475 ctgtgggggaa 3724485
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 3724280 ccgaaggtgctgtcggtggaggacaagctgaggaa 3724314
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 3723877 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 3723936
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 3723937 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 3723996
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 3723997 cttcctctcctgcctcgcgtggctctacgtcgccggccg 3724035
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 3725582 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 3725641
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 3725642 tgcatgaaatcagg 3725655
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 3727341 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 3727400
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 3727401 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 3727443
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 3724518 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 3724577
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 3724578 tccgtggctcatggatgccgagaggt 3724603
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 3724975 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 3725034
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 3725035 gatttcttgattcttg 3725050
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 3724783 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 3724842
Query: 637 gag 639
|||
Sbjct: 3724843 gag 3724845
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 3726112 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 3726160
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 3725382 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 3725441
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 3725442 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 3725501
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 3726766 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 3726825
Query: 1036 caacataaa 1044
||||||||
Sbjct: 3726826 taacataaa 3726834
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 3724126 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 3724180
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 3724415 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 3724474
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 3724475 ctgtgggggaa 3724485
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 3724280 ccgaaggtgctgtcggtggaggacaagctgaggaa 3724314
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 3877859 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 3877918
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 3877919 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 3877978
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 3877979 cttcctctcctgcctcgcgtggctctacgtcgccggccg 3878017
Score = 159 bits (80), Expect = 5e-036
Identities = 139/159 (87%), Gaps = 6/159 (3%)
Strand = Plus / Plus
Query: 118 cgccatggagacgctggccagcgccatgcggcgcgagaaccgccggtccaaggccccgcc 177
|||||||||||||||||| |||||||||||||| ||||||||||| | |||| |||| |
Sbjct: 3839803 cgccatggagacgctggcgagcgccatgcggcgggagaaccgccgcttcaagcccccctc 3839862
Query: 178 ctcctcctctgcttcctcc------gccctcgcctcgggcagggtccctctcgtcatggc 231
||||||||| || ||| || |||||| ||||||| |||||||| |||||||||||
Sbjct: 3839863 ctcctcctccgcctccgcctccgccgccctctcctcggggagggtccccctcgtcatggc 3839922
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 3839923 cttcctctcctgcctcgcgtggctctacgtcgccggccg 3839961
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 3879564 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 3879623
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 3879624 tgcatgaaatcagg 3879637
Score = 107 bits (54), Expect = 2e-020
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 833 ttagctgggttaattgagatgctcgaaggccgtcgaggtagccaaggattgtacatgggt 892
|||||||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||
Sbjct: 3841508 ttagctggattaattgagatgcttgaagcccgtcgaggtagccaaggactgtacatgggt 3841567
Query: 893 tgtatgaaatcagg 906
|| |||||||||||
Sbjct: 3841568 tgcatgaaatcagg 3841581
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 3881323 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 3881382
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 3881383 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 3881425
Score = 101 bits (51), Expect = 1e-018
Identities = 90/103 (87%)
Strand = Plus / Plus
Query: 1058 cagagttatgcacacgatgatatatcagtaggttcatggatgatgggactgaatgcaact 1117
||||| ||||| || ||||| |||||||||||||||||||||||||| |||||| | |||
Sbjct: 3843267 cagagctatgcccatgatgacatatcagtaggttcatggatgatggggctgaatactact 3843326
Query: 1118 tacgtggatgatgaccggttgtgctgcagcagttccagacaag 1160
|| || ||||| ||||| ||||||||| ||||||| |||||||
Sbjct: 3843327 tatgttgatgacgaccgtttgtgctgcggcagttctagacaag 3843369
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 3878500 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 3878559
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 3878560 tccgtggctcatggatgccgagaggt 3878585
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 3840444 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 3840503
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 3840504 tccgtggctcatggatgccgagaggt 3840529
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 3878957 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 3879016
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 3879017 gatttcttgattcttg 3879032
Score = 87.7 bits (44), Expect = 1e-014
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 638 agtgcaaatcgaggtgatagcttggaccgtaatattgatgatgaaaatcggcagacaaag 697
||||||||||||||||||||||||||||| || || |||||||||||||| | ||| ||
Sbjct: 3840901 agtgcaaatcgaggtgatagcttggaccgcaacatcgatgatgaaaatcgtcggacgaaa 3840960
Query: 698 gacttcttgattcttg 713
|| |||||||||||||
Sbjct: 3840961 gatttcttgattcttg 3840976
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 3878765 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 3878824
Query: 637 gag 639
|||
Sbjct: 3878825 gag 3878827
Score = 85.7 bits (43), Expect = 6e-014
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 577 aggtgatgctctgaagaagcttgaggaaaagggtgtagctattcgttttgttattggtcg 636
||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||
Sbjct: 3840709 aggtgatgctctgaagaagcttgaggagaagggtgtggtcattcgttttgtcattggtcg 3840768
Query: 637 gag 639
|||
Sbjct: 3840769 gag 3840771
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 3880094 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 3880142
Score = 81.8 bits (41), Expect = 9e-013
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 929 caacaatggtatgaacctgagtggtggaaatttggagattcaaaaacgt 977
|||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 3842038 caacaatggtatgaacctgaatggtggaagtttggagattcaaaaacgt 3842086
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 3879364 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 3879423
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 3879424 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 3879483
Score = 79.8 bits (40), Expect = 4e-012
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 713 gaaagtcatgaagaggctgcagaagaattaccgagcaaagcaaaaattttcttcagtgct 772
||||||||||| || |||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 3841308 gaaagtcatgaggaagctgcagaggagttaccaagcaaagttaagtttttcttcagtgca 3841367
Query: 773 gcagttgaagcctgggatgcagaattttatgtcaaagttgaagataacattaatcttgac 832
||| ||||||| ||||| ||||| || ||||| ||||| || || |||||||| ||||||
Sbjct: 3841368 gcaattgaagcttgggacgcagagttctatgtgaaagtcgatgacaacattaaccttgac 3841427
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 3880748 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 3880807
Query: 1036 caacataaa 1044
||||||||
Sbjct: 3880808 taacataaa 3880816
Score = 73.8 bits (37), Expect = 2e-010
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 976 gtattttcgacacgcttctggttctttgtttatcctctcaaaaaatttggctcgctacat 1035
||||||||| || ||||| ||| |||||||||||||||| || |||||||| ||||||||
Sbjct: 3842692 gtattttcgccatgcttccggtgctttgtttatcctctctaacaatttggcacgctacat 3842751
Query: 1036 caacataaa 1044
||||||||
Sbjct: 3842752 taacataaa 3842760
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 3878108 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 3878162
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 3840052 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 3840106
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 3878397 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 3878456
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 3878457 ctgtgggggaa 3878467
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 3840341 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 3840400
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 3840401 ctgtgggggaa 3840411
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 3878262 ccgaaggtgctgtcggtggaggacaagctgaggaa 3878296
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 3840206 ccgaaggtgctgtcggtggaggacaagctgaggaa 3840240
>gb|D48811.1|D48811 RICS15223A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 288
Score = 135 bits (68), Expect = 7e-029
Identities = 131/151 (86%), Gaps = 2/151 (1%)
Strand = Plus / Plus
Query: 177 cctcctcctctgcttcctccgccctcgcctcgggcagggtccctctcgtcatggccttcc 236
|||||| ||| || ||| |||||||| ||||||| |||||||| |||||||| |||||||
Sbjct: 77 cctcctgctccgcctccgccgccctctcctcggggagggtccccctcgtcatngccttcc 136
Query: 237 tctcctgcctcgcctggctctacgtcgccggccgtttgtggcaggacgcgcagacccggg 296
||||||||||||| |||||||||||||||||||| ||| |||||||||||||| | |
Sbjct: 137 tctcctgcctcgcgtggctctacgtcgccggccg-ntgtngcaggacgcgcaga-cggan 194
Query: 297 cgatcctgtccggcctcctcgagaagagctc 327
||||||||| || |||||| ||||||||||
Sbjct: 195 tgatcctgtctggtctcctcnagaagagctc 225
>gb|CA998031.1|CA998031 S234D1_F11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 303
Score = 95.6 bits (48), Expect = 6e-017
Identities = 159/196 (81%)
Strand = Plus / Plus
Query: 264 ccggccgtttgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaaga 323
||||||| |||||||||||||||| || ||| ||||||||| || |||||||||||||
Sbjct: 1 ccggccggctgtggcaggacgcgcatacgcggatgatcctgtctggtctcctcgagaaga 60
Query: 324 gctctaccagcgtcccgaaggtgctctcggtggaggacaagcttaggaaccttgggtgca 383
|||| || | ||||||||||| || |||||||||||||| ||||| || || ||||
Sbjct: 61 gctccggcaatcttccgaaggtgctgtctgtggaggacaagctgaggaatctaggatgca 120
Query: 384 aggcgattggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgagg 443
| ||||| ||||| |||| ||||| | |||||||| || ||||| || |||||||
Sbjct: 121 ttggaattgggaggaagattgcggaggcacaaatggaccttacaaaggcgaatagcgagg 180
Query: 444 ggtacctgtgggggaa 459
|||| |||||||||||
Sbjct: 181 ggtatctgtgggggaa 196
Score = 69.9 bits (35), Expect = 4e-009
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| ||||||| |||| ||
Sbjct: 229 agctccttgctgttattggagtttacactggttttggttcccggctcaagaagaacacct 288
Query: 555 tccgtggctcctgga 569
|||||||||| ||||
Sbjct: 289 tccgtggctcatgga 303
>gb|AQ327314.1|AQ327314 nbxb0040B20r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0040B20r, DNA sequence
Length = 793
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 287 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 228
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 227 tccgtggctcatggatgccgagaggt 202
Score = 69.9 bits (35), Expect = 4e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 273 tgtggcaggacgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||||||||||||||| ||| ||||||||| || |||||||||||||||||
Sbjct: 679 tgtggcaggacgcgcagacgcggatgatcctgtctggtctcctcgagaagagctc 625
Score = 61.9 bits (31), Expect = 9e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 389 attggaaggaaaattgttgaggcggagatggacctgaccaaggccaagagcgaggggtac 448
||||| ||||| |||| ||||| || |||||||| || ||||| ||||||||||||||
Sbjct: 390 attgggaggaagattgcggaggcagaaatggaccttacaaaggcgaagagcgaggggtat 331
Query: 449 ctgtgggggaa 459
|||||||||||
Sbjct: 330 ctgtgggggaa 320
Score = 54.0 bits (27), Expect = 2e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 338 ccgaaggtgctctcggtggaggacaagcttaggaa 372
||||||||||| ||||||||||||||||| |||||
Sbjct: 525 ccgaaggtgctgtcggtggaggacaagctgaggaa 491
>gb|AQ858216.1|AQ858216 nbeb0012O01f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0012O01f, DNA sequence
Length = 718
Score = 91.7 bits (46), Expect = 1e-015
Identities = 76/86 (88%)
Strand = Plus / Plus
Query: 495 agcttcttgccgtcattggagtttacactgggtttggctcccgtctcaagaggaacgtct 554
|||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||| ||
Sbjct: 172 agctccttgctgttattggagtttacactggttttggttcccggctcaagaggaacacct 231
Query: 555 tccgtggctcctggatgccaagaggt 580
|||||||||| |||||||| ||||||
Sbjct: 232 tccgtggctcatggatgccgagaggt 257
Score = 56.0 bits (28), Expect = 5e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 416 atggacctgaccaaggccaagagcgaggggtacctgtgggggaa 459
|||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 96 atggaccttacaaaggcgaagagcgaggggtatctgtgggggaa 139
>gb|AQ913272.1|AQ913272 nbeb0040L10f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0040L10f, DNA sequence
Length = 408
Score = 69.9 bits (35), Expect = 4e-009
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 232 cttcctctcctgcctcgcctggctctacgtcgccggccg 270
|||||||||||||||||| ||||||||||||||||||||
Sbjct: 408 cttcctctcctgcctcgcgtggctctacgtcgccggccg 370
Score = 46.1 bits (23), Expect = 0.051
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 282 acgcgcagacccgggcgatcctgtccggcctcctcgagaagagctc 327
||||||| || ||| ||||||||| || |||||||||||||||||
Sbjct: 269 acgcgcanacgcggatgatcctgtctggtctcctcgagaagagctc 224
>gb|C74877.1|C74877 C74877 Rice cDNA from immature leaf including apical meristem Oryza
sativa (japonica cultivar-group) cDNA clone E60595_1A,
mRNA sequence
Length = 462
Score = 56.0 bits (28), Expect = 5e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 255 tctacgtcgccggccgtttgtggcaggacgcgcaga 290
||||||||||||||||| |||||||||| |||||||
Sbjct: 99 tctacgtcgccggccgtctgtggcaggatgcgcaga 134
>gb|AU093420.1|AU093420 AU093420 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S14109, mRNA sequence
Length = 456
Score = 56.0 bits (28), Expect = 5e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 255 tctacgtcgccggccgtttgtggcaggacgcgcaga 290
||||||||||||||||| |||||||||| |||||||
Sbjct: 122 tctacgtcgccggccgtctgtggcaggatgcgcaga 157
>dbj|AK069501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020A13, full
insert sequence
Length = 1777
Score = 56.0 bits (28), Expect = 5e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 255 tctacgtcgccggccgtttgtggcaggacgcgcaga 290
||||||||||||||||| |||||||||| |||||||
Sbjct: 453 tctacgtcgccggccgtctgtggcaggatgcgcaga 488
Score = 46.1 bits (23), Expect = 0.051
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 935 tggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttct 994
||||||||||| || |||||||||||||| ||| |||||||| || || || ||||||
Sbjct: 1136 tggtatgaaccagaatggtggaaatttggtgatgggaaaacgtacttccgccatgcttct 1195
Query: 995 ggt 997
|||
Sbjct: 1196 ggt 1198
>ref|XM_482156.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1777
Score = 56.0 bits (28), Expect = 5e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 255 tctacgtcgccggccgtttgtggcaggacgcgcaga 290
||||||||||||||||| |||||||||| |||||||
Sbjct: 453 tctacgtcgccggccgtctgtggcaggatgcgcaga 488
Score = 46.1 bits (23), Expect = 0.051
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 935 tggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttct 994
||||||||||| || |||||||||||||| ||| |||||||| || || || ||||||
Sbjct: 1136 tggtatgaaccagaatggtggaaatttggtgatgggaaaacgtacttccgccatgcttct 1195
Query: 995 ggt 997
|||
Sbjct: 1196 ggt 1198
>gb|CA999112.1|CA999112 S234N_G08 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 332
Score = 46.1 bits (23), Expect = 0.051
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 935 tggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttct 994
||||||||||| || |||||||||||||| ||| |||||||| || || || ||||||
Sbjct: 141 tggtatgaaccagaatggtggaaatttggtgatgggaaaacgtacttccgccatgcttct 200
Query: 995 ggt 997
|||
Sbjct: 201 ggt 203
>gb|CB670945.1|CB670945 OSJNEe04E13.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04E13 5', mRNA sequence
Length = 773
Score = 46.1 bits (23), Expect = 0.051
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 935 tggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttct 994
||||||||||| || |||||||||||||| ||| |||||||| || || || ||||||
Sbjct: 586 tggtatgaaccagaatggtggaaatttggtgatgggaaaacgtacttccgccatgcttct 527
Query: 995 ggt 997
|||
Sbjct: 526 ggt 524
>gb|CB670946.1|CB670946 OSJNEe04E13.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04E13 3', mRNA sequence
Length = 867
Score = 46.1 bits (23), Expect = 0.051
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 935 tggtatgaacctgagtggtggaaatttggagattcaaaaacgtattttcgacacgcttct 994
||||||||||| || |||||||||||||| ||| |||||||| || || || ||||||
Sbjct: 603 tggtatgaaccagaatggtggaaatttggtgatgggaaaacgtacttccgccatgcttct 544
Query: 995 ggt 997
|||
Sbjct: 543 ggt 541
>dbj|AK106258.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F02, full
insert sequence
Length = 1367
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 467 cctcctcctctgcttcctccgc 446
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
sequence
Length = 143681
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 69849 cctcctcctctgcttcctccgc 69828
>gb|AACV01007778.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007778, whole
genome shotgun sequence
Length = 38963
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 27898 cctcctcctctgcttcctccgc 27877
>ref|XM_469521.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 894
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 388 cctcctcctctgcttcctccgc 367
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 1780984 cctcctcctctgcttcctccgc 1780963
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 2261019 cctcctcctctgcttcctccgc 2260998
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 29527182 cctcctcctctgcttcctccgc 29527161
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 28567043 cctcctcctctgcttcctccgc 28567022
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 44.1 bits (22), Expect = 0.20
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 177 cctcctcctctgcttcctccgc 198
||||||||||||||||||||||
Sbjct: 28475719 cctcctcctctgcttcctccgc 28475698
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,174,225
Number of Sequences: 438736
Number of extensions: 2174225
Number of successful extensions: 14615
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14164
Number of HSP's gapped (non-prelim): 438
length of query: 1380
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 1359
effective length of database: 2,791,206,460
effective search space: 3793249579140
effective search space used: 3793249579140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)